BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00034986
         (1150 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   410   e-112
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   409   e-112
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              394   e-107
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   387   e-105
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   376   e-102

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  410 bits (1055), Expect = e-112
 Identities = 211/386 (54%), Positives = 265/386 (68%), Gaps = 6/386 (1%)
 Frame = +3

Query: 9    MGGQPVGXXXXXXXXXXXXXXLDLPISALEASPLLNLKEILECGSNK--VNNTASLFFSK 182
            MGGQPVG              LD PIS LE SPLLNLK +LECG  K   + T SLF SK
Sbjct: 916  MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSK 975

Query: 183  KLGRWTHGFEYAALEVKSRLERLQFINIVSTVMIMFSPKNCNESHASPWVCHFHINKEMA 362
            KL +  HGFEY ALEVK+ LE+L F +IVSTVMI+FSP+N +++H SPWVCHFH+ +E+A
Sbjct: 976  KLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIA 1035

Query: 363  KRKQIEVQSIIEALYMKCNSTLVKSKVHLPDLQITCNEC----SEESIATICINVRMVGS 530
            K++ ++  SII+ALYMKCNS   +SK++LPDLQIT  +C     +E     CI V +V S
Sbjct: 1036 KKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIVNS 1095

Query: 531  NNNCSTQLETLEETVIPFLLQTVIKGSSNVKKVDILWKDXXXXXXXXXXXXGELYIRVLM 710
              +C  QL+T+ + VIPFLL  V+KG  +VKKVDILW D            G LY+RV +
Sbjct: 1096 KKSC-IQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSS-GRLYLRVYV 1153

Query: 711  SDTCDRSRFWTVLMNDCLQLMEMIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAISD 890
            S  C +  FW VLM+ CLQ+M+MIDW+RS+P++I       GID     F++ L SAISD
Sbjct: 1154 SGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISD 1213

Query: 891  TGRAVLPEHLYLVADCLSSTGEFVPLSANGLARQRKHTSVSSPFMQACFSSPADCFVNAG 1070
             G+ VLPEHL LVA CLS+TGEFV L+A G+ARQ++ TS+SSPFMQ CFSSP  CF+ AG
Sbjct: 1214 IGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAG 1273

Query: 1071 KMGTVDNLQGSLDSLAWGNSPSLGTG 1148
            K    DNL GSLD+LAWG  PS+G+G
Sbjct: 1274 KRAVADNLHGSLDALAWGKIPSVGSG 1299


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  409 bits (1052), Expect = e-112
 Identities = 205/386 (53%), Positives = 266/386 (68%), Gaps = 6/386 (1%)
 Frame = +3

Query: 9    MGGQPVGXXXXXXXXXXXXXXLDLPISALEASPLLNLKEILE--CGSNKVNNTASLFFSK 182
            +GG PVG              LD P+SALE+SPLLNLK+ILE   GS     TAS+F SK
Sbjct: 565  IGGHPVGSLAACAISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSK 624

Query: 183  KLGRWTHGFEYAALEVKSRLERLQFINIVSTVMIMFSPKNCNESHASPWVCHFHINKEMA 362
            +LGRW HGFEY ALEVK  LERL    +VSTVMI FSP+    +H  PWVCHFHI+KE  
Sbjct: 625  RLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENV 684

Query: 363  KRKQIEVQSIIEALYMKCNSTLVKSKVHLPDLQITCNECSEESI----ATICINVRMVGS 530
            K ++++++S+++AL M+  +   K+   LP+L ITC +CS   +    + ICI V +V +
Sbjct: 685  KTRRLKLRSVLDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEKSEICITVSVVET 744

Query: 531  NNNCSTQLETLEETVIPFLLQTVIKGSSNVKKVDILWKDXXXXXXXXXXXXGELYIRVLM 710
            + + S+ L+TL + VIPFLL+TVIKG S  KKVDILWK+            GELY++V M
Sbjct: 745  SKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFM 804

Query: 711  SDTCDRSRFWTVLMNDCLQLMEMIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAISD 890
            S++CDR +FW  L++ CLQ+ ++IDW+RSYP+D+   T A GID A   F+ KL SA+S+
Sbjct: 805  SESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSE 864

Query: 891  TGRAVLPEHLYLVADCLSSTGEFVPLSANGLARQRKHTSVSSPFMQACFSSPADCFVNAG 1070
            TG+ +LPEHL L AD L++TGEFVPLSA GL  QRK   V SPFMQACF++P D FV A 
Sbjct: 865  TGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAA 924

Query: 1071 KMGTVDNLQGSLDSLAWGNSPSLGTG 1148
            KMG  D+LQGSL+SLAWG +PS+GTG
Sbjct: 925  KMGLSDDLQGSLESLAWGKTPSIGTG 950


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  394 bits (1011), Expect = e-107
 Identities = 205/386 (53%), Positives = 260/386 (67%), Gaps = 6/386 (1%)
 Frame = +3

Query: 9    MGGQPVGXXXXXXXXXXXXXXLDLPISALEASPLLNLKEILECGSNK--VNNTASLFFSK 182
            MGGQPVG              LD PIS LE SPLLNLK +LECG  K   + T SLF SK
Sbjct: 785  MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSK 844

Query: 183  KLGRWTHGFEYAALEVKSRLERLQFINIVSTVMIMFSPKNCNESHASPWVCHFHINKEMA 362
            KL +  HGFEY ALEVK+ LE+L F +IVSTVMI+FSP+N +++H SPWVCHFH+ +E+A
Sbjct: 845  KLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIA 904

Query: 363  KRKQIEVQSIIEALYMKCNSTLVKSKVHLPDLQITCNEC----SEESIATICINVRMVGS 530
            K++ ++  SII+ALYMKCNS   +SK++LPDLQIT  +C     +E     CI V +V S
Sbjct: 905  KKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIVNS 964

Query: 531  NNNCSTQLETLEETVIPFLLQTVIKGSSNVKKVDILWKDXXXXXXXXXXXXGELYIRVLM 710
              +C  QL+T+ + VIPFLL  V+KG   +K  D+L               G LY+RV +
Sbjct: 965  KKSC-IQLDTVRDLVIPFLLGAVVKGCC-IKNSDVLKSSS-----------GRLYLRVYV 1011

Query: 711  SDTCDRSRFWTVLMNDCLQLMEMIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAISD 890
            S  C +  FW VLM+ CLQ+M+MIDW+RS+P++I       GID     F++ L SAISD
Sbjct: 1012 SGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISD 1071

Query: 891  TGRAVLPEHLYLVADCLSSTGEFVPLSANGLARQRKHTSVSSPFMQACFSSPADCFVNAG 1070
             G+ VLPEHL LVA CLS+TGEFV L+A G+ARQ++ TS+SSPFMQ CFSSP  CF+ AG
Sbjct: 1072 IGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAG 1131

Query: 1071 KMGTVDNLQGSLDSLAWGNSPSLGTG 1148
            K    DNL GSLD+LAWG  PS+G+G
Sbjct: 1132 KRAVADNLHGSLDALAWGKIPSVGSG 1157


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  387 bits (995), Expect = e-105
 Identities = 199/387 (51%), Positives = 259/387 (66%), Gaps = 7/387 (1%)
 Frame = +3

Query: 9    MGGQPVGXXXXXXXXXXXXXXLDLPISALEASPLLNLKEILECG--SNKVNNTASLFFSK 182
            + G+PVG              LD PIS LE SPLLNLK +LECG   N  + T SLF S+
Sbjct: 931  IAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLSE 990

Query: 183  KLGRWTHGFEYAALEVKSRLERLQFINIVSTVMIMFSPKNCNESHASPWVCHFHINKEMA 362
            KLGR  HGFEYAALEV++ LERL F +IVS V I+FSP++    H SPWVCHFH+ KE+ 
Sbjct: 991  KLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEIV 1050

Query: 363  KRKQIEVQSIIEALYMKCNSTLVKSKVHLPDLQITCNECS-----EESIATICINVRMVG 527
            K++ ++V  II+AL  +C     KSK   P +QIT   C+     +E   T CI V +V 
Sbjct: 1051 KKRSLKVHYIIDALEKQC-----KSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIVE 1105

Query: 528  SNNNCSTQLETLEETVIPFLLQTVIKGSSNVKKVDILWKDXXXXXXXXXXXXGELYIRVL 707
            ++ N   +LET+++ +IPFLL+TVIKG   ++KVDILW D            GEL++RV 
Sbjct: 1106 TSKNEFIELETIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVH 1165

Query: 708  MSDTCDRSRFWTVLMNDCLQLMEMIDWKRSYPEDIQAATSALGIDFAKTQFISKLASAIS 887
            MS   D++R W  LM+DCL +M++IDW RS+P++I     A GID     F++ L SA+S
Sbjct: 1166 MSRGSDKTRLWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMS 1225

Query: 888  DTGRAVLPEHLYLVADCLSSTGEFVPLSANGLARQRKHTSVSSPFMQACFSSPADCFVNA 1067
            D G+ VLPEHL LVA+CLS TGEFV L+A GL RQR+H SVS+PF+QACFS+P DCF+ A
Sbjct: 1226 DVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRA 1285

Query: 1068 GKMGTVDNLQGSLDSLAWGNSPSLGTG 1148
             K G VD+LQGS+D+LAWG  P++GTG
Sbjct: 1286 AKAGVVDDLQGSIDALAWGKVPAIGTG 1312


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  376 bits (965), Expect = e-102
 Identities = 202/409 (49%), Positives = 265/409 (64%), Gaps = 29/409 (7%)
 Frame = +3

Query: 9    MGGQPVGXXXXXXXXXXXXXXLDLPISALEASPLLNLKEILECGSNKV--NNTASLFFSK 182
            +GG+PVG              L  PIS LEASPLLNLK +LECGS K   + T SLF S+
Sbjct: 1045 IGGEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSE 1104

Query: 183  KLGRWTHGFEYAALEVKSRLERLQFINIVSTVMIMFSPKNCNESHASPWVCHFHINKEMA 362
            K+G+  +GFEYAALEVK+ LER  F NIVSTVMI+F+P++C++   SPWVCHFH++KE  
Sbjct: 1105 KIGKQRNGFEYAALEVKNYLERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENV 1164

Query: 363  KRKQIEVQSIIEALYMKCNSTLVKSKVHLPDLQI--------------TCNECSE----- 485
             R+++EV SII++LY + +S   +SKV LP L+I              TC++C +     
Sbjct: 1165 TRRKLEVHSIIDSLYQQYDSFRRESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANE 1224

Query: 486  --------ESIATICINVRMVGSNNNCSTQLETLEETVIPFLLQTVIKGSSNVKKVDILW 641
                    E     CI V +V  + N S QL+++ +++IPFLLQT IKG   +KKVDILW
Sbjct: 1225 GGETSVGNEKDGEDCITVAVVEDSKN-SVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILW 1283

Query: 642  KDXXXXXXXXXXXXGELYIRVLMSDTCDRSRFWTVLMNDCLQLMEMIDWKRSYPEDIQAA 821
            KD            GELY+RV MS   D   FW  L+N C ++M +IDW RS+P++I   
Sbjct: 1284 KDLPKVTKSYNGSAGELYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHF 1343

Query: 822  TSALGIDFAKTQFISKLASAISDTGRAVLPEHLYLVADCLSSTGEFVPLSANGLARQRKH 1001
             SA GID     +   L+SA SDTG+++LP+HL LVA+ LS++GEFV L+A G+ARQRKH
Sbjct: 1344 CSAFGIDAGWQHYFHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKH 1403

Query: 1002 TSVSSPFMQACFSSPADCFVNAGKMGTVDNLQGSLDSLAWGNSPSLGTG 1148
             SVSSPF+QACFS+P   F+ A K G VDNLQG+LD+LAWGN   +GTG
Sbjct: 1404 ASVSSPFVQACFSNPGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTG 1452