BLASTX nr result

ID: Angelica22_contig00032944 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00032944
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309525.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08
ref|XP_002324748.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-08
gb|ABK92961.1| unknown [Populus trichocarpa]                           62   4e-08
ref|NP_179571.1| zinc finger CCCH domain-containing protein 20 [...    60   1e-07
ref|XP_004157905.1| PREDICTED: zinc finger CCCH domain-containin...    60   2e-07

>ref|XP_002309525.1| predicted protein [Populus trichocarpa] gi|222855501|gb|EEE93048.1|
           predicted protein [Populus trichocarpa]
          Length = 390

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +2

Query: 173 DDYDIPMDAYTSDSFRIYVFKVKRCARAKSHDWTEC 280
           D+ D+P+DA++ D FR+Y FKVKRCAR +SHDWTEC
Sbjct: 69  DELDLPVDAFSCDHFRMYEFKVKRCARGRSHDWTEC 104


>ref|XP_002324748.1| predicted protein [Populus trichocarpa] gi|222866182|gb|EEF03313.1|
           predicted protein [Populus trichocarpa]
          Length = 197

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 23/36 (63%), Positives = 31/36 (86%)
 Frame = +2

Query: 173 DDYDIPMDAYTSDSFRIYVFKVKRCARAKSHDWTEC 280
           D+ D+P+DA++ D FR+YVFKV+RC R +SHDWTEC
Sbjct: 67  DELDLPVDAFSCDHFRMYVFKVRRCGRGRSHDWTEC 102


>gb|ABK92961.1| unknown [Populus trichocarpa]
          Length = 384

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 23/36 (63%), Positives = 31/36 (86%)
 Frame = +2

Query: 173 DDYDIPMDAYTSDSFRIYVFKVKRCARAKSHDWTEC 280
           D+ D+P+DA++ D FR+YVFKV+RC R +SHDWTEC
Sbjct: 67  DELDLPVDAFSCDHFRMYVFKVRRCGRGRSHDWTEC 102


>ref|NP_179571.1| zinc finger CCCH domain-containing protein 20 [Arabidopsis
           thaliana] gi|75220226|sp|O82199.1|C3H20_ARATH RecName:
           Full=Zinc finger CCCH domain-containing protein 20;
           Short=AtC3H20 gi|3687237|gb|AAC62135.1| putative
           CCCH-type zinc finger protein [Arabidopsis thaliana]
           gi|21536515|gb|AAM60847.1| putative CCCH-type zinc
           finger protein [Arabidopsis thaliana]
           gi|22531114|gb|AAM97061.1| putative CCCH-type zinc
           finger protein [Arabidopsis thaliana]
           gi|25083840|gb|AAN72125.1| putative CCCH-type zinc
           finger protein [Arabidopsis thaliana]
           gi|330251835|gb|AEC06929.1| zinc finger CCCH
           domain-containing protein 20 [Arabidopsis thaliana]
          Length = 359

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 182 DIPMDAYTSDSFRIYVFKVKRCARAKSHDWTEC 280
           D P+DAYT D FR+Y FKV+RCAR +SHDWTEC
Sbjct: 68  DSPIDAYTCDHFRMYEFKVRRCARGRSHDWTEC 100


>ref|XP_004157905.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like
           isoform 2 [Cucumis sativus]
          Length = 378

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2

Query: 176 DYDIPMDAYTSDSFRIYVFKVKRCARAKSHDWTEC 280
           + D P+DAY+SD FR+Y FK+K+C R +SHDWTEC
Sbjct: 69  EIDSPLDAYSSDQFRMYEFKIKKCTRGRSHDWTEC 103


Top