BLASTX nr result
ID: Angelica22_contig00030349
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica22_contig00030349
(1905 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 66 3e-21
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 66 3e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 66 1e-19
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 64 1e-19
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 62 2e-17
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 65.9 bits (159), Expect(3) = 3e-21
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = +1
Query: 481 SSLGFVKALYPSRIWGLLPLISKKLNAQLCTPLVRKSVLELENGRADFSASLGGSNFLNL 660
++ GF +P R GL PL+ +KL PL+ K L + + + G + ++
Sbjct: 611 AAYGFPAGTFPIRYLGL-PLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISS 669
Query: 661 *SRAIQGYWAMYLFLPKGVLKKIPSLLANFLWGGT*LLQLNTKFLGL-IAVFQCKGGLGI 837
+ +W LPKG +KKI SL + FLW G+ + ++K + + + +GGLG
Sbjct: 670 VIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGF 729
Query: 838 RDLTQWNQASILHQIWRFIHPTNSSLCLQW 927
R +WN+ +L IW + ++SL QW
Sbjct: 730 RSFGEWNKTLLLRLIW-VLFDRDTSLWAQW 758
Score = 44.3 bits (103), Expect(3) = 3e-21
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +2
Query: 290 LDIYHLIFADDVSLFCQGDMNSVSAIMEGVNQFSGISGLHLNQSKCSMF 436
L I HL+FADDV +F G +S+ I E ++ F+ SGL +N+ K +F
Sbjct: 550 LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF 598
Score = 40.0 bits (92), Expect(3) = 3e-21
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 147 GFFWRKSGIRLGDPMSPYLLVIAMEVLT 230
GFF G+R GDP+SPYL V+AMEV +
Sbjct: 502 GFFRSTKGLRQGDPLSPYLFVLAMEVFS 529
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 65.9 bits (159), Expect(3) = 3e-21
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = +1
Query: 481 SSLGFVKALYPSRIWGLLPLISKKLNAQLCTPLVRKSVLELENGRADFSASLGGSNFLNL 660
++ GF +P R GL PL+ +KL PL+ K L + + + G + ++
Sbjct: 611 AAYGFPAGTFPIRYLGL-PLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISS 669
Query: 661 *SRAIQGYWAMYLFLPKGVLKKIPSLLANFLWGGT*LLQLNTKFLGL-IAVFQCKGGLGI 837
+ +W LPKG +KKI SL + FLW G+ + ++K + + + +GGLG
Sbjct: 670 VIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGF 729
Query: 838 RDLTQWNQASILHQIWRFIHPTNSSLCLQW 927
R +WN+ +L IW + ++SL QW
Sbjct: 730 RSFGEWNKTLLLRLIW-VLFDRDTSLWAQW 758
Score = 44.3 bits (103), Expect(3) = 3e-21
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +2
Query: 290 LDIYHLIFADDVSLFCQGDMNSVSAIMEGVNQFSGISGLHLNQSKCSMF 436
L I HL+FADDV +F G +S+ I E ++ F+ SGL +N+ K +F
Sbjct: 550 LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF 598
Score = 40.0 bits (92), Expect(3) = 3e-21
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +3
Query: 147 GFFWRKSGIRLGDPMSPYLLVIAMEVLT 230
GFF G+R GDP+SPYL V+AMEV +
Sbjct: 502 GFFRSTKGLRQGDPLSPYLFVLAMEVFS 529
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 65.9 bits (159), Expect(2) = 1e-19
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Frame = +1
Query: 475 IYSSLGFVKALYPSRIWGLLPLISKKLNAQLCTPLVRKSVLELENGRADFSASLGGSNFL 654
I S+ F P R GL PL++K++ +PL+ K ++ + A + G +
Sbjct: 329 ILSAFPFASGQLPVRYLGL-PLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALI 387
Query: 655 NL*SRAIQGYWAMYLFLPKGVLKKIPSLLANFLWGGT*LLQLNTKFLGLIAVFQCK---- 822
N ++ +W LP G +K+I L + FLW G +LN K + CK
Sbjct: 388 NSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGP---ELNPKKAKITWTSLCKLKQE 444
Query: 823 GGLGIRDLTQWNQASILHQIWRFIHPTNSSLCLQWFEWT 939
GGLGI+ L + N+ S L IWR + SSL + W WT
Sbjct: 445 GGLGIKSLLEANKVSCLKLIWRLV-SRQSSLWVNWV-WT 481
Score = 58.9 bits (141), Expect(2) = 1e-19
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Frame = +2
Query: 56 EMDIIKAFDTLNWSFLFNTKEHMGFPVKF---VRLFLEEIWY*TG*SHVTLPACHSHGG- 223
++DI KAFD++ W FL NT E + FP F ++L + + + S G
Sbjct: 170 KIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGL 229
Query: 224 -------PY----CVH*KS------TASSSFKHHWGTRLLDIYHLIFADDVSLFCQGDMN 352
PY C++ S + +H + L + HL FADD+ +F G
Sbjct: 230 RQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQR 289
Query: 353 SVSAIMEGVNQFSGISGLHLNQSKCSMFLS 442
SV ++ +F+G SGLH++ K +++L+
Sbjct: 290 SVEGVINIFKEFAGKSGLHISLEKSTLYLA 319
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 64.3 bits (155), Expect(2) = 1e-19
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Frame = +1
Query: 475 IYSSLGFVKALYPSRIWGLLPLISKKLNAQLCTPLVRKSVLELENGRADFSASLGGSNFL 654
I S+ F P R G PL++K++ +PL+ K ++ + A + G +
Sbjct: 898 ILSAFPFASGQLPVRYLGF-PLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALI 956
Query: 655 NL*SRAIQGYWAMYLFLPKGVLKKIPSLLANFLWGGT*LLQLNTKFLGLIAVFQCK---- 822
N ++ +W LP G +K+I L + FLW G +LN K + CK
Sbjct: 957 NSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGP---ELNPKKAKITWTSLCKLKQE 1013
Query: 823 GGLGIRDLTQWNQASILHQIWRFIHPTNSSLCLQWFEWT 939
GGLGI+ L + N+ S L IWR + SSL + W WT
Sbjct: 1014 GGLGIKSLLEANKVSCLKLIWRLV-SRQSSLWVNWV-WT 1050
Score = 60.1 bits (144), Expect(2) = 1e-19
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Frame = +2
Query: 56 EMDIIKAFDTLNWSFLFNTKEHMGFPVKF---VRLFLEEIWY*TG*SHVTLPACHSHGG- 223
++DI KAFD++ W FL NT E + FP KF ++L + + + S G
Sbjct: 739 KIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGL 798
Query: 224 -------PY----CVH*KS------TASSSFKHHWGTRLLDIYHLIFADDVSLFCQGDMN 352
PY C++ S + +H + L + HL FADD+ +F G
Sbjct: 799 RQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQR 858
Query: 353 SVSAIMEGVNQFSGISGLHLNQSKCSMFLSIV 448
SV ++ F+G SGLH++ K +++L+ V
Sbjct: 859 SVEGVINIFKDFAGKSGLHISLEKSTLYLAEV 890
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 61.6 bits (148), Expect(2) = 2e-17
Identities = 75/304 (24%), Positives = 114/304 (37%), Gaps = 21/304 (6%)
Frame = +3
Query: 489 GFCEGSLPITYMGITTPYL*KT*CPTLHSFSS*ICVRIGKWTCRFLSIAGRLQLLKSVIP 668
GF GSLP+ Y+G+ T I R W R LS AGR+QLL SVI
Sbjct: 651 GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEK-ITARFNSWVVRLLSFAGRVQLLASVIS 709
Query: 669 SYTRILGYVPLSP*RCLKKDPELAC*LSLGWNLTSAAQHKVSWADCCIP-------MQRW 827
+ P C+KK L + KV+W+ C+P ++R+
Sbjct: 710 GIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRF 769
Query: 828 --SGHS*FNSVESSLYPTSNLEIYTSYKLISLPSVV*V--DHEFPFSSWCVS*ILKARDL 995
S + + + L+ S +K SL E P SW +L+ R +
Sbjct: 770 AVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVV 829
Query: 996 ARAHIRYAVGSNSDFLLWHDPWSN-SEFIDFIASFXXXXXXXXXXXXXXXXMHGSVWNPS 1172
A IR VG+ D W D W+ I F+ + W+ +
Sbjct: 830 AERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIA 889
Query: 1173 SFNHDLPIELHHLLLDTQVLQN--DLISWDGQREANI------SSMWHSIR-ASAVTPGL 1325
D + LH L + + + DL S+D + + ++ W ++R +SA P
Sbjct: 890 DPRSDQALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWA 949
Query: 1326 NAVW 1337
AVW
Sbjct: 950 RAVW 953
Score = 55.5 bits (132), Expect(2) = 2e-17
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Frame = +2
Query: 56 EMDIIKAFDTLNWSFLFNTKEHMGFPVKFVRLFLEEIWY*TG*SHVTLPACHSHG----- 220
++D+ KAFD++ W F+ + + P KF LE + + S + HS G
Sbjct: 488 KVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECL---STASFSVILNGHSAGHFWSS 544
Query: 221 ---------GPYC----------VH*KSTASSSFKHHWGTRLLDIYHLIFADDVSLFCQG 343
PY + S +H T L+I HL+FADDV +F G
Sbjct: 545 KGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDG 604
Query: 344 DMNSVSAIMEGVNQFSGISGLHLNQSKCSMF---LSIVQADVIA 466
+S+ I+E + F+G SGL +N +K ++ LS ++D +A
Sbjct: 605 KSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMA 648