BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00027973
         (1013 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   489   e-136
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              486   e-135
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   486   e-135
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   485   e-135
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   469   e-130

>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  489 bits (1258), Expect = e-136
 Identities = 238/337 (70%), Positives = 274/337 (81%)
 Frame = +3

Query: 3    SDKEVVNLIDAGAEDDTVVNILRASMREADKQCENFRSSGMALRYLDKQFKTCEYPPEES 182
            SD+EVVNLID   ED T+VNIL AS+ EADK CE+FR    AL Y+D+  K C++PP+ES
Sbjct: 322  SDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQES 381

Query: 183  VKECIDKLLFPKLIGIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELASELLDR 362
            V+ECI+  LFP L G KQKARFL YMVKCLL ++ GRRK D RDDFRNKRLELA ELL+R
Sbjct: 382  VEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLER 441

Query: 363  ELRVHINHAKRRMVKVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSTGGWSHPYKRAE 542
            ELR HI HA+RRMVK MQRDL GDR +  IEHYLD SIITNGLSRAFSTG W HPYKR E
Sbjct: 442  ELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRME 501

Query: 543  KISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGENCG 722
            ++SGVVA L RTNPLQ  ++MR++RQ+V YTGK+G ARYPHPSHWGK+CF+STPDGENCG
Sbjct: 502  RVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCG 561

Query: 723  LIKNLASTGLVSTSILEPFIDKLLDSGMEELVDDTSTSLHGKNFIFLDGELVGVCQDSAS 902
            L+KNLAS GLVST IL+PF++ L   GM++LVDD STSLHGK  + LDGE VGVC+DSA 
Sbjct: 562  LVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSAL 621

Query: 903  FVAKLRSLRRRKEVPIQVEIKRDEKQAEVRIFCDAGR 1013
            FV+KLR  RRR EVP QVE+KRDE Q EVRIF D GR
Sbjct: 622  FVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGR 658


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  486 bits (1251), Expect = e-135
 Identities = 237/341 (69%), Positives = 280/341 (82%), Gaps = 4/341 (1%)
 Frame = +3

Query: 3    SDKEVVNLIDAGAEDDTVVNILRASMREADKQCEN----FRSSGMALRYLDKQFKTCEYP 170
            SDKEVV+LID   +D  + NIL AS+ EAD++ E     FR  G A+ ++DK  K+C++P
Sbjct: 341  SDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFP 400

Query: 171  PEESVKECIDKLLFPKLIGIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELASE 350
            P ES++ECI K LFP   G+KQKARFL YMVKCLL+AYTGRRK D RDDFRNKRLELA E
Sbjct: 401  PGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGE 460

Query: 351  LLDRELRVHINHAKRRMVKVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSTGGWSHPY 530
            LL+RELRVHI HA+RRMVK MQR+L GDR +  IE+YLD SIITNGLSRAFSTG WSHP+
Sbjct: 461  LLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPF 520

Query: 531  KRAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDG 710
            KR E+ISGVVA L RTNPLQ  ++MR+TRQ+V+YTGK+G ARYPHPSHWGK+CF+STPDG
Sbjct: 521  KRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDG 580

Query: 711  ENCGLIKNLASTGLVSTSILEPFIDKLLDSGMEELVDDTSTSLHGKNFIFLDGELVGVCQ 890
            ENCGL+KNLA TGLVST +L+P +DKL D GME+LVDDTST L GKN +FLDG+ VGVC+
Sbjct: 581  ENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCE 640

Query: 891  DSASFVAKLRSLRRRKEVPIQVEIKRDEKQAEVRIFCDAGR 1013
            D  SFV +LR+ RR KE+P QVEIKRDE+Q EVRIF DAGR
Sbjct: 641  DPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGR 681


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  486 bits (1251), Expect = e-135
 Identities = 237/341 (69%), Positives = 280/341 (82%), Gaps = 4/341 (1%)
 Frame = +3

Query: 3    SDKEVVNLIDAGAEDDTVVNILRASMREADKQCEN----FRSSGMALRYLDKQFKTCEYP 170
            SDKEVV+LID   +D  + NIL AS+ EAD++ E     FR  G A+ ++DK  K+C++P
Sbjct: 305  SDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFP 364

Query: 171  PEESVKECIDKLLFPKLIGIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELASE 350
            P ES++ECI K LFP   G+KQKARFL YMVKCLL+AYTGRRK D RDDFRNKRLELA E
Sbjct: 365  PGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGE 424

Query: 351  LLDRELRVHINHAKRRMVKVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSTGGWSHPY 530
            LL+RELRVHI HA+RRMVK MQR+L GDR +  IE+YLD SIITNGLSRAFSTG WSHP+
Sbjct: 425  LLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPF 484

Query: 531  KRAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDG 710
            KR E+ISGVVA L RTNPLQ  ++MR+TRQ+V+YTGK+G ARYPHPSHWGK+CF+STPDG
Sbjct: 485  KRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDG 544

Query: 711  ENCGLIKNLASTGLVSTSILEPFIDKLLDSGMEELVDDTSTSLHGKNFIFLDGELVGVCQ 890
            ENCGL+KNLA TGLVST +L+P +DKL D GME+LVDDTST L GKN +FLDG+ VGVC+
Sbjct: 545  ENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCE 604

Query: 891  DSASFVAKLRSLRRRKEVPIQVEIKRDEKQAEVRIFCDAGR 1013
            D  SFV +LR+ RR KE+P QVEIKRDE+Q EVRIF DAGR
Sbjct: 605  DPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGR 645


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  485 bits (1249), Expect = e-135
 Identities = 237/337 (70%), Positives = 277/337 (82%)
 Frame = +3

Query: 3    SDKEVVNLIDAGAEDDTVVNILRASMREADKQCENFRSSGMALRYLDKQFKTCEYPPEES 182
            SDKEVVNLID   ED  +VN+L AS+ +AD+ C+ FR    A+  + K+ + C++PP+ES
Sbjct: 129  SDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENCKFPPQES 188

Query: 183  VKECIDKLLFPKLIGIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELASELLDR 362
            ++  +   LFP L G +QKARFL YMVKCLL+AYTGRRK D RDDFRNKRLELA ELL+R
Sbjct: 189  IEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLELAGELLER 248

Query: 363  ELRVHINHAKRRMVKVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSTGGWSHPYKRAE 542
            ELRVH+ HA+RRMVK MQRDL G+R ++ IEHYLD SIITNGLSRAFSTG WSHPYK+ E
Sbjct: 249  ELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSHPYKKME 308

Query: 543  KISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGENCG 722
            +ISGVVA L RTNPLQ+I++MR+TRQ+V YTGK+G ARYPHPSHWGKICF+STPDGENCG
Sbjct: 309  RISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGENCG 368

Query: 723  LIKNLASTGLVSTSILEPFIDKLLDSGMEELVDDTSTSLHGKNFIFLDGELVGVCQDSAS 902
            L+KNLA TGLVST+I E F+DKLLDSGME+LVDDTST L GK  +FLDG  VGVC DS S
Sbjct: 369  LVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNWVGVCGDSVS 428

Query: 903  FVAKLRSLRRRKEVPIQVEIKRDEKQAEVRIFCDAGR 1013
            FVA LR  RRRKEVP QVEIKRDE+  EVR+F DAGR
Sbjct: 429  FVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGR 465


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  469 bits (1206), Expect = e-130
 Identities = 229/364 (62%), Positives = 279/364 (76%), Gaps = 27/364 (7%)
 Frame = +3

Query: 3    SDKEVVNLIDAGAEDDTVVNILRASMREADKQCENFRSSGMALRYLDKQFKTCEYPPEES 182
            SD+EVV+LID   +D  ++NIL AS+ +ADK CE+FR    AL Y+D+  K+C++PP+ES
Sbjct: 328  SDREVVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLVKSCKFPPQES 387

Query: 183  VKECIDKLLFPKLIGIKQKARFLAYMVKCLLKAYTGRRKFDCRDDFRNKRLELASELLDR 362
            V+ECI + LFP L G+KQKARFL YMVKCLL +Y GRRK D RDDFRNKRL+LA ELL+R
Sbjct: 388  VEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLER 447

Query: 363  ELRVHINHAKRRMVKVMQRDLDGDRTMNRIEHYLDCSIITNGLSRAFSTGGWSHPYKRAE 542
            ELRVH+ HA+RRMVK +QRDL GDR +  IEHYLD SIITNGLSRAFSTG W HPYKR E
Sbjct: 448  ELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRME 507

Query: 543  KISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGENCG 722
            ++SGVVA L RTNPLQ  +++R+TRQ+V YTGK+G ARYPHPSHWGK+CF+STPDGENCG
Sbjct: 508  RVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCG 567

Query: 723  LIKNLASTGLVSTSILEPFIDKLLDSGMEELVDDTSTSLHGKNFIFLDGELVGVCQDSAS 902
            L+KNLAS GLVST++L+P ++ L   GM++LVDD++TSLHGK  + LDG+ VGVC+DSA 
Sbjct: 568  LVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSAL 627

Query: 903  FVAKLRSLRRRKEVP---------------------------IQVEIKRDEKQAEVRIFC 1001
            FV+KLR  RRR EVP                            QVE+KRDE+Q EVRIF 
Sbjct: 628  FVSKLRRQRRRNEVPHQLAHTLAIPPGICYLLPTHVPVTLTEAQVEVKRDEQQDEVRIFS 687

Query: 1002 DAGR 1013
            DAGR
Sbjct: 688  DAGR 691