BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00027931
         (249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001031614.1| CTC-interacting domain 12 protein [Arabidops...    60   2e-07
ref|NP_192799.1| CTC-interacting domain 12 protein [Arabidopsis ...    60   2e-07
dbj|BAH56954.1| AT4G10610 [Arabidopsis thaliana]                       60   2e-07
gb|AAA86641.1| RNA-binding protein [Arabidopsis thaliana]              59   5e-07
ref|XP_002872527.1| RNA-binding protein 37 [Arabidopsis lyrata s...    58   9e-07

>ref|NP_001031614.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
           gi|332657508|gb|AEE82908.1| CTC-interacting domain 12
           protein [Arabidopsis thaliana]
          Length = 326

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -2

Query: 242 NIVRPVLPN-SGPYFAYLADGNTLVPTNSPVAAGGNFARQIIGSSHGKGRENDRTITAQR 66
           ++ +PV+   +G +FA   +   +   N PV   G+F R+      GK R N RT  AQR
Sbjct: 87  SLTKPVVNGFNGGFFA--VNNGFVAAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQR 144

Query: 65  EDVIRRTVFVPDIENQVTEEQ 3
           E++IRRTV+V DI+ QVTEEQ
Sbjct: 145 EEIIRRTVYVSDIDQQVTEEQ 165


>ref|NP_192799.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
           gi|4115925|gb|AAD03436.1| contains similarity to RNA
           recognition motifs (Pfam: PF00076, Score=5.5e-23, N=2)
           [Arabidopsis thaliana] gi|4539439|emb|CAB40027.1|
           RNA-binding protein [Arabidopsis thaliana]
           gi|4959384|gb|AAD34325.1| RNA-binding protein
           [Arabidopsis thaliana] gi|7267758|emb|CAB78184.1|
           RNA-binding protein [Arabidopsis thaliana]
           gi|14517528|gb|AAK62654.1| AT4g10610/T4F9_70
           [Arabidopsis thaliana] gi|18700204|gb|AAL77712.1|
           AT4g10610/T4F9_70 [Arabidopsis thaliana]
           gi|21592407|gb|AAM64358.1| RNA-binding protein
           [Arabidopsis thaliana] gi|332657507|gb|AEE82907.1|
           CTC-interacting domain 12 protein [Arabidopsis thaliana]
          Length = 336

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -2

Query: 242 NIVRPVLPN-SGPYFAYLADGNTLVPTNSPVAAGGNFARQIIGSSHGKGRENDRTITAQR 66
           ++ +PV+   +G +FA   +   +   N PV   G+F R+      GK R N RT  AQR
Sbjct: 87  SLTKPVVNGFNGGFFA--VNNGFVAAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQR 144

Query: 65  EDVIRRTVFVPDIENQVTEEQ 3
           E++IRRTV+V DI+ QVTEEQ
Sbjct: 145 EEIIRRTVYVSDIDQQVTEEQ 165


>dbj|BAH56954.1| AT4G10610 [Arabidopsis thaliana]
          Length = 206

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -2

Query: 242 NIVRPVLPN-SGPYFAYLADGNTLVPTNSPVAAGGNFARQIIGSSHGKGRENDRTITAQR 66
           ++ +PV+   +G +FA   +   +   N PV   G+F R+      GK R N RT  AQR
Sbjct: 87  SLTKPVVNGFNGGFFA--VNNGFVAAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQR 144

Query: 65  EDVIRRTVFVPDIENQVTEEQ 3
           E++IRRTV+V DI+ QVTEEQ
Sbjct: 145 EEIIRRTVYVSDIDQQVTEEQ 165


>gb|AAA86641.1| RNA-binding protein [Arabidopsis thaliana]
          Length = 336

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = -2

Query: 242 NIVRPVLPN-SGPYFAYLADGNTLVPTNSPVAAGGNFARQIIGSSHGKGRENDRTITAQR 66
           ++ +PV+   +G +FA   +   +   N PV   G+F R+      GK R N RT  AQR
Sbjct: 87  SLTKPVVNGFNGGFFA--VNNGFVAAGNFPVNEDGSFRRKKSFGQQGKRRMNPRTSLAQR 144

Query: 65  EDVIRRTVFVPDIENQVTEEQ 3
           E++IRRTV+V DI  QVTEEQ
Sbjct: 145 EEIIRRTVYVSDIYQQVTEEQ 165


>ref|XP_002872527.1| RNA-binding protein 37 [Arabidopsis lyrata subsp. lyrata]
           gi|297318364|gb|EFH48786.1| RNA-binding protein 37
           [Arabidopsis lyrata subsp. lyrata]
          Length = 336

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/54 (55%), Positives = 35/54 (64%)
 Frame = -2

Query: 164 NSPVAAGGNFARQIIGSSHGKGRENDRTITAQREDVIRRTVFVPDIENQVTEEQ 3
           N PV   G F R+      GK R N RT  AQRE++IRRTV+V DI+ QVTEEQ
Sbjct: 112 NFPVNEDGGFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQ 165