BLASTX nr result
ID: Angelica22_contig00024623
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Angelica22_contig00024623
(1750 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193469.2| DNA mismatch repair protein MSH4 [Arabidopsis t... 775 0.0
gb|AAT70180.1| MSH4 [Arabidopsis thaliana] 773 0.0
ref|XP_002870107.1| hypothetical protein ARALYDRAFT_493139 [Arab... 773 0.0
ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-... 759 0.0
ref|XP_003538746.1| PREDICTED: mutS protein homolog 4-like [Glyc... 759 0.0
>ref|NP_193469.2| DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
gi|395406788|sp|F4JP48.1|MSH4_ARATH RecName: Full=DNA
mismatch repair protein MSH4; Short=AtMSH4; AltName:
Full=MutS protein homolog 4 gi|332658482|gb|AEE83882.1|
DNA mismatch repair protein MSH4 [Arabidopsis thaliana]
Length = 792
Score = 775 bits (2001), Expect = 0.0
Identities = 392/563 (69%), Positives = 437/563 (77%)
Frame = +2
Query: 62 MEDDASEKSTFVVALIENRAKEVGVAAFDLRSASLHLSQYIETSRSYQNTKTLMHFYDPM 241
MEDD E+S+FV LIENRAKEVG+AAFDLRSASLHLSQYIETS SYQNTKTL+ FYDP
Sbjct: 1 MEDDGGERSSFVAGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPS 60
Query: 242 VIIVPPNKLAPDSMVGVSEFVDRFYSTTRKVVMMRGCFDDTTGAVMVKNLAAKEPSALGL 421
VIIVPPNKLA D MVGVSE VDR YST RKVV RGCFDDT GAV+++NLAA+EP ALGL
Sbjct: 61 VIIVPPNKLAADGMVGVSELVDRCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGL 120
Query: 422 DSYYKQYYLCLXXXXXTIKWIEAEKGIIITNHSLLVTFNGSYDHMNIDATSVHNLEIIEP 601
D+YYKQ+YL L TIKWIEAEKG+I+TNHSL VTFNGS+DHMNIDATSV NLE+I+P
Sbjct: 121 DTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDP 180
Query: 602 LQSTLWGTTNKKRSLFQXXXXXXXXXXXXXXXANLLQPLKDIETIKARLDCLDELMTNEQ 781
+ L GT+NKKRSLFQ ANLLQPLKDIETI RLDCLDELM+NEQ
Sbjct: 181 FHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQ 240
Query: 782 LFFGLSQALRKFPKETDRVLCHFCFKPKKVTKEVLGIDNARXXXXXXXXXXXXXXXXXXX 961
LFFGLSQ LRKFPKETDRVLCHFCFKPKKVT+ V+G +N R
Sbjct: 241 LFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRKSQNMISSIILLKTALDAL 300
Query: 962 XXXSSVLKDAKSFLLGNVYNSVCENEKYASIRKRIGEEIDEDVLHARVPFVARTQQCFAV 1141
+ VLKDAK FLL NVY SVCEN++YASIRK+IGE ID+DVLHARVPFVARTQQCFA+
Sbjct: 301 PILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQCFAL 360
Query: 1142 KAGIDGMLDIARRTFCDTSEGVLYDCXXXXXXXXXXXXXXXXXTKYTAIHSLANKYREEY 1321
KAGIDG LDIARRTFCDTSE AIH+LA+KYREE+
Sbjct: 361 KAGIDGFLDIARRTFCDTSE---------------------------AIHNLASKYREEF 393
Query: 1322 KLPNLKIPFNNRQGFYFSIPHKDVQGKLPSKFIQVVKHGNNIHCSTPELASLNVRNKSAA 1501
LPNLK+PFNNRQGF+F IP K+VQGKLP+KF QVVKHG NIHCS+ ELASLNVRNKSAA
Sbjct: 394 NLPNLKLPFNNRQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAA 453
Query: 1502 GECYIRTEFCLEELMDAIRKEVSAXXXXXXXXXXXDMIVNSFANMISTKPVDRYTRPQFT 1681
GEC+IRTE CLE LMDAIR+++SA DMIVNSFA+ ISTKPVDRY+RP+ T
Sbjct: 454 GECFIRTETCLEALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELT 513
Query: 1682 DDGPLAIDAGRHPILESVHNEFI 1750
D GPLAIDAGRHPILES+HN+F+
Sbjct: 514 DSGPLAIDAGRHPILESIHNDFV 536
>gb|AAT70180.1| MSH4 [Arabidopsis thaliana]
Length = 792
Score = 773 bits (1997), Expect = 0.0
Identities = 391/563 (69%), Positives = 437/563 (77%)
Frame = +2
Query: 62 MEDDASEKSTFVVALIENRAKEVGVAAFDLRSASLHLSQYIETSRSYQNTKTLMHFYDPM 241
MEDD E+S+FV LIENRAKEVG+AAFDLRSASLHLSQYIETS SYQNTKTL+ FYDP
Sbjct: 1 MEDDGGERSSFVAGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPS 60
Query: 242 VIIVPPNKLAPDSMVGVSEFVDRFYSTTRKVVMMRGCFDDTTGAVMVKNLAAKEPSALGL 421
VIIVPPNKLA D MVGVSE VDR YST RKVV RGCFDDT GAV+++NLAA+EP ALGL
Sbjct: 61 VIIVPPNKLAADGMVGVSELVDRCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGL 120
Query: 422 DSYYKQYYLCLXXXXXTIKWIEAEKGIIITNHSLLVTFNGSYDHMNIDATSVHNLEIIEP 601
D+YYKQ+YL L TIKWIEAEKG+I+TNHSL VTFNGS+DHMNIDATSV NLE+I+P
Sbjct: 121 DTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDP 180
Query: 602 LQSTLWGTTNKKRSLFQXXXXXXXXXXXXXXXANLLQPLKDIETIKARLDCLDELMTNEQ 781
+ L GT+NKKRSLFQ ANLLQPLKDIETI RLDCLDELM+NEQ
Sbjct: 181 FHNALLGTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQ 240
Query: 782 LFFGLSQALRKFPKETDRVLCHFCFKPKKVTKEVLGIDNARXXXXXXXXXXXXXXXXXXX 961
LFFGLSQ LRKFP+ETDRVLCHFCFKPKKVT+ V+G +N R
Sbjct: 241 LFFGLSQVLRKFPEETDRVLCHFCFKPKKVTEAVIGFENTRKSQNMISSIILLKTALDAL 300
Query: 962 XXXSSVLKDAKSFLLGNVYNSVCENEKYASIRKRIGEEIDEDVLHARVPFVARTQQCFAV 1141
+ VLKDAK FLL NVY SVCEN++YASIRK+IGE ID+DVLHARVPFVARTQQCFA+
Sbjct: 301 PILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQCFAL 360
Query: 1142 KAGIDGMLDIARRTFCDTSEGVLYDCXXXXXXXXXXXXXXXXXTKYTAIHSLANKYREEY 1321
KAGIDG LDIARRTFCDTSE AIH+LA+KYREE+
Sbjct: 361 KAGIDGFLDIARRTFCDTSE---------------------------AIHNLASKYREEF 393
Query: 1322 KLPNLKIPFNNRQGFYFSIPHKDVQGKLPSKFIQVVKHGNNIHCSTPELASLNVRNKSAA 1501
LPNLK+PFNNRQGF+F IP K+VQGKLP+KF QVVKHG NIHCS+ ELASLNVRNKSAA
Sbjct: 394 NLPNLKLPFNNRQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAA 453
Query: 1502 GECYIRTEFCLEELMDAIRKEVSAXXXXXXXXXXXDMIVNSFANMISTKPVDRYTRPQFT 1681
GEC+IRTE CLE LMDAIR+++SA DMIVNSFA+ ISTKPVDRY+RP+ T
Sbjct: 454 GECFIRTETCLEALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELT 513
Query: 1682 DDGPLAIDAGRHPILESVHNEFI 1750
D GPLAIDAGRHPILES+HN+F+
Sbjct: 514 DSGPLAIDAGRHPILESIHNDFV 536
>ref|XP_002870107.1| hypothetical protein ARALYDRAFT_493139 [Arabidopsis lyrata subsp.
lyrata] gi|297315943|gb|EFH46366.1| hypothetical protein
ARALYDRAFT_493139 [Arabidopsis lyrata subsp. lyrata]
Length = 792
Score = 773 bits (1996), Expect = 0.0
Identities = 390/563 (69%), Positives = 437/563 (77%)
Frame = +2
Query: 62 MEDDASEKSTFVVALIENRAKEVGVAAFDLRSASLHLSQYIETSRSYQNTKTLMHFYDPM 241
MEDD E+S+FV LIENRAKEVG+AAFDLRSASLHLSQYIETS SYQNTKTL+ FYDP
Sbjct: 1 MEDDGGERSSFVAGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPS 60
Query: 242 VIIVPPNKLAPDSMVGVSEFVDRFYSTTRKVVMMRGCFDDTTGAVMVKNLAAKEPSALGL 421
VIIVPPNKLA D MVGVSE VDR YST RKVV RGCFDDT GAV+++NLAA+EP ALGL
Sbjct: 61 VIIVPPNKLAADGMVGVSELVDRCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGL 120
Query: 422 DSYYKQYYLCLXXXXXTIKWIEAEKGIIITNHSLLVTFNGSYDHMNIDATSVHNLEIIEP 601
D+YYKQ+YL L TIKWIEAEKG+I+TNHSL +TFNGS+DHMNIDATSV NLEII+P
Sbjct: 121 DTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLTITFNGSFDHMNIDATSVENLEIIDP 180
Query: 602 LQSTLWGTTNKKRSLFQXXXXXXXXXXXXXXXANLLQPLKDIETIKARLDCLDELMTNEQ 781
+ L GT+NKKRSLFQ ANLLQPLKDIETI RLDCLDELM+NEQ
Sbjct: 181 FHNALLGTSNKKRSLFQMFKTTKTVGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQ 240
Query: 782 LFFGLSQALRKFPKETDRVLCHFCFKPKKVTKEVLGIDNARXXXXXXXXXXXXXXXXXXX 961
LFFGLSQ LRKFP+ETDRVLCHFCFKPKKVT+ V+G +N R
Sbjct: 241 LFFGLSQVLRKFPQETDRVLCHFCFKPKKVTEAVIGFENTRRSQNMISSIILLKTALDAL 300
Query: 962 XXXSSVLKDAKSFLLGNVYNSVCENEKYASIRKRIGEEIDEDVLHARVPFVARTQQCFAV 1141
+ VLKDAK FLL NVY SVCEN++YASIRK+IGE ID+DVLHARVPFVARTQQCFA+
Sbjct: 301 PLLAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDDVLHARVPFVARTQQCFAL 360
Query: 1142 KAGIDGMLDIARRTFCDTSEGVLYDCXXXXXXXXXXXXXXXXXTKYTAIHSLANKYREEY 1321
KAGIDG LDIARRTFCDTSE AIH+LA+KYREE+
Sbjct: 361 KAGIDGFLDIARRTFCDTSE---------------------------AIHNLASKYREEF 393
Query: 1322 KLPNLKIPFNNRQGFYFSIPHKDVQGKLPSKFIQVVKHGNNIHCSTPELASLNVRNKSAA 1501
LPNLK+PFNNRQGF+F IP K+VQGKLP+KF QVVKHG NIHCS+ ELASLNVRNKSAA
Sbjct: 394 NLPNLKLPFNNRQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAA 453
Query: 1502 GECYIRTEFCLEELMDAIRKEVSAXXXXXXXXXXXDMIVNSFANMISTKPVDRYTRPQFT 1681
GEC+IRTE CLE LMDAIR+++SA DMIVNSFA+ ISTKPVDRY+RP+ T
Sbjct: 454 GECFIRTETCLEALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELT 513
Query: 1682 DDGPLAIDAGRHPILESVHNEFI 1750
D GPLAIDAGRHP+LES+HN+F+
Sbjct: 514 DSGPLAIDAGRHPLLESIHNDFV 536
>ref|XP_004169721.1| PREDICTED: DNA mismatch repair protein MSH4-like, partial [Cucumis
sativus]
Length = 770
Score = 759 bits (1961), Expect = 0.0
Identities = 384/541 (70%), Positives = 425/541 (78%)
Frame = +2
Query: 128 VGVAAFDLRSASLHLSQYIETSRSYQNTKTLMHFYDPMVIIVPPNKLAPDSMVGVSEFVD 307
VGVAAFDLRSASLHLSQYIETS SYQNTKTL+HFY+PMVI+V PNKLAPD MVGVS D
Sbjct: 1 VGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYEPMVILVSPNKLAPDGMVGVSVLAD 60
Query: 308 RFYSTTRKVVMMRGCFDDTTGAVMVKNLAAKEPSALGLDSYYKQYYLCLXXXXXTIKWIE 487
RF++T +KVVM R CFDDT GAV++KNLAAKEPSALGL++YYKQYYLCL +IKWIE
Sbjct: 61 RFFATVKKVVMARSCFDDTKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIE 120
Query: 488 AEKGIIITNHSLLVTFNGSYDHMNIDATSVHNLEIIEPLQSTLWGTTNKKRSLFQXXXXX 667
AEKG+I+TNHSLLVTFNGS DH++IDATSV NLEIIEPL S LWGT+NKKRSL+
Sbjct: 121 AEKGVIVTNHSLLVTFNGSSDHVSIDATSVQNLEIIEPLHSNLWGTSNKKRSLYNMLKTT 180
Query: 668 XXXXXXXXXXANLLQPLKDIETIKARLDCLDELMTNEQLFFGLSQALRKFPKETDRVLCH 847
ANLLQPLKDIETI ARLDCLDELM+NEQLFFGLSQALRKFPKETDRVLCH
Sbjct: 181 KTIGGSRLLRANLLQPLKDIETINARLDCLDELMSNEQLFFGLSQALRKFPKETDRVLCH 240
Query: 848 FCFKPKKVTKEVLGIDNARXXXXXXXXXXXXXXXXXXXXXXSSVLKDAKSFLLGNVYNSV 1027
FCFK KKVT EVL +A+ S VLK+AKSFLL N+Y S+
Sbjct: 241 FCFKQKKVTNEVLHPSDAKKSQNLISSIILLKTALEALPLLSKVLKEAKSFLLANIYKSI 300
Query: 1028 CENEKYASIRKRIGEEIDEDVLHARVPFVARTQQCFAVKAGIDGMLDIARRTFCDTSEGV 1207
CENEKY +IRKRIGE IDEDVLHARVPF+ARTQQCFAVKAGIDG+LDIARRTFCDTSE
Sbjct: 301 CENEKYTNIRKRIGEVIDEDVLHARVPFIARTQQCFAVKAGIDGLLDIARRTFCDTSE-- 358
Query: 1208 LYDCXXXXXXXXXXXXXXXXXTKYTAIHSLANKYREEYKLPNLKIPFNNRQGFYFSIPHK 1387
AIH+LANKYREEYKL NLK+PFNNRQGFY SIPHK
Sbjct: 359 -------------------------AIHNLANKYREEYKLSNLKLPFNNRQGFYLSIPHK 393
Query: 1388 DVQGKLPSKFIQVVKHGNNIHCSTPELASLNVRNKSAAGECYIRTEFCLEELMDAIRKEV 1567
DVQGKLP+KFIQV+KHGNNI CST ELASLNVRNKSAAGECYIRTE CLE L+DAIR++V
Sbjct: 394 DVQGKLPNKFIQVLKHGNNIRCSTLELASLNVRNKSAAGECYIRTEICLEGLVDAIREDV 453
Query: 1568 SAXXXXXXXXXXXDMIVNSFANMISTKPVDRYTRPQFTDDGPLAIDAGRHPILESVHNEF 1747
S DMIVNSFA+ ISTKPVDRYTRP FT++GP+AI+A RHPILES+HN+F
Sbjct: 454 SMLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPNFTENGPMAIEAARHPILESIHNDF 513
Query: 1748 I 1750
+
Sbjct: 514 V 514
>ref|XP_003538746.1| PREDICTED: mutS protein homolog 4-like [Glycine max]
Length = 794
Score = 759 bits (1961), Expect = 0.0
Identities = 381/563 (67%), Positives = 431/563 (76%)
Frame = +2
Query: 62 MEDDASEKSTFVVALIENRAKEVGVAAFDLRSASLHLSQYIETSRSYQNTKTLMHFYDPM 241
MEDD E S+FVV +IENRAKEVG+AAFDLRSASLHLSQYIETS SYQNTKTL+HFYDP+
Sbjct: 1 MEDDGGESSSFVVGIIENRAKEVGLAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPI 60
Query: 242 VIIVPPNKLAPDSMVGVSEFVDRFYSTTRKVVMMRGCFDDTTGAVMVKNLAAKEPSALGL 421
VII+PPNKLA +S GV+E VDRFY + ++V++ RGCFDDT GA+++KNLAAKEPSALGL
Sbjct: 61 VIIIPPNKLASNSTAGVTELVDRFYGSVKQVMLARGCFDDTKGAILIKNLAAKEPSALGL 120
Query: 422 DSYYKQYYLCLXXXXXTIKWIEAEKGIIITNHSLLVTFNGSYDHMNIDATSVHNLEIIEP 601
D+YYKQYYLCL T+KW EAEKG+++TNHSL VTFNGS+DHMNID+TS+ NLEIIEP
Sbjct: 121 DTYYKQYYLCLAAAAATLKWTEAEKGVVVTNHSLSVTFNGSFDHMNIDSTSIQNLEIIEP 180
Query: 602 LQSTLWGTTNKKRSLFQXXXXXXXXXXXXXXXANLLQPLKDIETIKARLDCLDELMTNEQ 781
STL GT+NKKRSLF ANLLQPLKDIETI ARLDCLDELM+NEQ
Sbjct: 181 FHSTLLGTSNKKRSLFHMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCLDELMSNEQ 240
Query: 782 LFFGLSQALRKFPKETDRVLCHFCFKPKKVTKEVLGIDNARXXXXXXXXXXXXXXXXXXX 961
LFFGL Q LRKFPKETDRVLCHFCFK KKVT E L +D A+
Sbjct: 241 LFFGLCQILRKFPKETDRVLCHFCFKAKKVTAEALAVDRAKKSQVLVSSVILLKTALDAL 300
Query: 962 XXXSSVLKDAKSFLLGNVYNSVCENEKYASIRKRIGEEIDEDVLHARVPFVARTQQCFAV 1141
S VLKD KS LL N+Y SVCENEKY IRKRIGE IDEDVLHARVPFVA TQQCFAV
Sbjct: 301 PLLSKVLKDVKSSLLSNIYKSVCENEKYDLIRKRIGEVIDEDVLHARVPFVACTQQCFAV 360
Query: 1142 KAGIDGMLDIARRTFCDTSEGVLYDCXXXXXXXXXXXXXXXXXTKYTAIHSLANKYREEY 1321
KAGIDG+LDI+RR FC+TSE AIH+LAN YRE++
Sbjct: 361 KAGIDGLLDISRRAFCETSE---------------------------AIHNLANNYREDF 393
Query: 1322 KLPNLKIPFNNRQGFYFSIPHKDVQGKLPSKFIQVVKHGNNIHCSTPELASLNVRNKSAA 1501
KLPNLK+ + NRQGF+F IP K++QGKLPSKFIQVVKHGNNI CS+ ELASLN RNKSAA
Sbjct: 394 KLPNLKLTYKNRQGFHFVIPQKNIQGKLPSKFIQVVKHGNNIRCSSLELASLNARNKSAA 453
Query: 1502 GECYIRTEFCLEELMDAIRKEVSAXXXXXXXXXXXDMIVNSFANMISTKPVDRYTRPQFT 1681
ECY RTE CLEELMD IR+ VS DMIVNSFA+MISTKPVDRYTRP+FT
Sbjct: 454 AECYTRTEVCLEELMDDIRENVSVLTLLAEVLCLLDMIVNSFAHMISTKPVDRYTRPEFT 513
Query: 1682 DDGPLAIDAGRHPILESVHNEFI 1750
++GPLAID+GRHPILES+HN+F+
Sbjct: 514 ENGPLAIDSGRHPILESIHNDFV 536