BLASTX nr result

ID: Angelica22_contig00024494 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00024494
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29999.3| unnamed protein product [Vitis vinifera]               62   5e-08
ref|XP_002275839.1| PREDICTED: gamma-tubulin complex component 3...    62   5e-08
ref|XP_004161669.1| PREDICTED: LOW QUALITY PROTEIN: gamma-tubuli...    59   3e-07
ref|XP_004144694.1| PREDICTED: gamma-tubulin complex component 3...    59   3e-07
ref|XP_003521223.1| PREDICTED: gamma-tubulin complex component 3...    56   4e-06

>emb|CBI29999.3| unnamed protein product [Vitis vinifera]
          Length = 777

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/64 (51%), Positives = 44/64 (68%)
 Frame = -3

Query: 193 QQDSKVLDLVQELVTRLLXXXXXXXXXXXXXTQSLKYALRILSSRMTPSIAVDEAAMADS 14
           +++ +V DL++ELV RLL              +SL+YA+RILSS MTPSIA D AA+A+S
Sbjct: 2   EEEHRVTDLIKELVLRLLSQNPQNPSSSIDTQKSLRYAIRILSSLMTPSIAPDSAAIAES 61

Query: 13  IKRQ 2
           IKRQ
Sbjct: 62  IKRQ 65


>ref|XP_002275839.1| PREDICTED: gamma-tubulin complex component 3 homolog [Vitis
           vinifera]
          Length = 854

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/64 (51%), Positives = 44/64 (68%)
 Frame = -3

Query: 193 QQDSKVLDLVQELVTRLLXXXXXXXXXXXXXTQSLKYALRILSSRMTPSIAVDEAAMADS 14
           +++ +V DL++ELV RLL              +SL+YA+RILSS MTPSIA D AA+A+S
Sbjct: 2   EEEHRVTDLIKELVLRLLSQNPQNPSSSIDTQKSLRYAIRILSSLMTPSIAPDSAAIAES 61

Query: 13  IKRQ 2
           IKRQ
Sbjct: 62  IKRQ 65


>ref|XP_004161669.1| PREDICTED: LOW QUALITY PROTEIN: gamma-tubulin complex component
           3-like [Cucumis sativus]
          Length = 846

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
 Frame = -3

Query: 199 MDQQDS-KVLDLVQELVTRLLXXXXXXXXXXXXXT--QSLKYALRILSSRMTPSIAVDEA 29
           M++ DS KVLDL+++LV RLL                +SL+YA+RIL+SRMTPSIA D A
Sbjct: 1   MEEDDSTKVLDLIKDLVLRLLSHNPTSNSSPTSSDFQKSLRYAIRILTSRMTPSIAPDAA 60

Query: 28  AMADSIKRQ 2
           A+A+SIKR+
Sbjct: 61  AIAESIKRR 69


>ref|XP_004144694.1| PREDICTED: gamma-tubulin complex component 3-like [Cucumis sativus]
          Length = 846

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
 Frame = -3

Query: 199 MDQQDS-KVLDLVQELVTRLLXXXXXXXXXXXXXT--QSLKYALRILSSRMTPSIAVDEA 29
           M++ DS KVLDL+++LV RLL                +SL+YA+RIL+SRMTPSIA D A
Sbjct: 1   MEEDDSTKVLDLIKDLVLRLLSHNPTSNSSPTSSDFQKSLRYAIRILTSRMTPSIAPDAA 60

Query: 28  AMADSIKRQ 2
           A+A+SIKR+
Sbjct: 61  AIAESIKRR 69


>ref|XP_003521223.1| PREDICTED: gamma-tubulin complex component 3 homolog [Glycine max]
          Length = 844

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
 Frame = -3

Query: 196 DQQDSKVLDLVQELVTRLLXXXXXXXXXXXXXTQ-----SLKYALRILSSRMTPSIAVDE 32
           ++   K+ DLV+ELV RLL                    SL+YALRILSSR+TPS+A D 
Sbjct: 5   EEDQQKLPDLVKELVHRLLSQNLPPNSPPLNPNSPEFRNSLRYALRILSSRLTPSVAPDA 64

Query: 31  AAMADSIKRQ 2
           AA+ADSIKR+
Sbjct: 65  AAIADSIKRR 74


Top