BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00020654
         (642 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   361   6e-98
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   359   2e-97
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh...   358   5e-97
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   356   2e-96
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   350   1e-94

>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  361 bits (927), Expect = 6e-98
 Identities = 176/217 (81%), Positives = 199/217 (91%), Gaps = 4/217 (1%)
 Frame = +3

Query: 3    YQSQKHSHQAIGFSTTNPSIRVDTNTHQLYYPQRPLFRTMLSECLGKAENSK----MLPK 170
            YQS+KHS QAIGFST NP+ RVDTNTHQLYYPQRPLFRTML++ LGK + ++    MLP+
Sbjct: 754  YQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPR 813

Query: 171  PEFYNGQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQK 350
            PE++NGQCAIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEH+RSYKA+V+NKEA  KK K
Sbjct: 814  PEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLK 873

Query: 351  IEDAINFGKIPSKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGM 530
            IED++NFGK  SKIGRVDSLD+DGFPFIGANLQ+GDI+IGK +ESG D SVKLKHTE+GM
Sbjct: 874  IEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGM 933

Query: 531  VQKVILSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 641
            VQKV+LS+NDEGKNFAVVSLRQVRSPCLGDKFSSMHG
Sbjct: 934  VQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHG 970


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  359 bits (922), Expect = 2e-97
 Identities = 172/217 (79%), Positives = 199/217 (91%), Gaps = 4/217 (1%)
 Frame = +3

Query: 3    YQSQKHSHQAIGFSTTNPSIRVDTNTHQLYYPQRPLFRTMLSECLGKAE----NSKMLPK 170
            YQS+KHS QA+GF+TTNP+IRVDTNTHQLYYPQRPLFRTM+S+CLGK      ++ ++P+
Sbjct: 561  YQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPR 620

Query: 171  PEFYNGQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQK 350
             E++NGQCAIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKADV+NKE+  KK K
Sbjct: 621  AEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKESVGKKPK 680

Query: 351  IEDAINFGKIPSKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGM 530
             ED++NFGK+ SKIGRVDSLD+DGFPFIGANLQ GDIV+G+ AESG D S+KLKHTE+GM
Sbjct: 681  FEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGM 740

Query: 531  VQKVILSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 641
            VQKV+LS+NDEGKNFAVVSLRQVR+PCLGDKFSSMHG
Sbjct: 741  VQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHG 777


>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score =  358 bits (919), Expect = 5e-97
 Identities = 173/217 (79%), Positives = 196/217 (90%), Gaps = 4/217 (1%)
 Frame = +3

Query: 3    YQSQKHSHQAIGFSTTNPSIRVDTNTHQLYYPQRPLFRTMLSECLGKAENSK----MLPK 170
            YQS+KHS QAIGFSTTNPSIRVDTN+H LYYPQRP+F TMLS+ LGK++ S     MLP 
Sbjct: 363  YQSEKHSQQAIGFSTTNPSIRVDTNSHNLYYPQRPIFGTMLSDSLGKSKYSSHHKGMLPH 422

Query: 171  PEFYNGQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQK 350
            PEF+NGQCAIVAVNVHLGYNQEDS+VMNR+S+ERGMFR+EH+RSYKA+V+N +AP KK K
Sbjct: 423  PEFFNGQCAIVAVNVHLGYNQEDSIVMNRASMERGMFRTEHVRSYKAEVDNSDAPGKKLK 482

Query: 351  IEDAINFGKIPSKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGM 530
             +D ++FGK  SKIGRVDSLD+DGFPFIGANLQTGDIVIGKHA SGVD S+KLKHTE+GM
Sbjct: 483  PDDLVDFGKTESKIGRVDSLDDDGFPFIGANLQTGDIVIGKHAASGVDHSIKLKHTERGM 542

Query: 531  VQKVILSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 641
            VQKV+LSSND+GKNF VVSLRQVRSPCLGDKFSSMHG
Sbjct: 543  VQKVVLSSNDDGKNFGVVSLRQVRSPCLGDKFSSMHG 579


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  356 bits (913), Expect = 2e-96
 Identities = 175/217 (80%), Positives = 197/217 (90%), Gaps = 4/217 (1%)
 Frame = +3

Query: 3    YQSQKHSHQAIGFSTTNPSIRVDTNTHQLYYPQRPLFRTMLSECLGKAENSK----MLPK 170
            YQ+QKHS QAIGF TTNP+IRVDT +HQLYYPQRPLFRT+ S+CLGK  +++    ++PK
Sbjct: 745  YQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPK 804

Query: 171  PEFYNGQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQK 350
            PE YNGQ AIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKADV+NKE   K++K
Sbjct: 805  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRK 864

Query: 351  IEDAINFGKIPSKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGM 530
             +D +NFGKIPSKIGRVDSLD+DGFPFIGANLQ+GDIVIG+ AESG D S+KLKHTE+GM
Sbjct: 865  YDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGM 924

Query: 531  VQKVILSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 641
            VQKV+LSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG
Sbjct: 925  VQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 961


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  350 bits (898), Expect = 1e-94
 Identities = 174/213 (81%), Positives = 193/213 (90%)
 Frame = +3

Query: 3    YQSQKHSHQAIGFSTTNPSIRVDTNTHQLYYPQRPLFRTMLSECLGKAENSKMLPKPEFY 182
            YQ+QKHS QAIGFSTTNP+IRVDT +HQL+YPQRPLFRTM+S+CL       +LPKPE +
Sbjct: 713  YQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCL-------VLPKPELF 765

Query: 183  NGQCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQKIEDA 362
            NGQ AIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKA+V+NKE   K++K ED+
Sbjct: 766  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDS 825

Query: 363  INFGKIPSKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKV 542
            I FGKI SKIGRVDSLD+DGFPFIGAN+Q+GDIVIGK AESG D SVKLKHTE+GMVQKV
Sbjct: 826  ITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKV 885

Query: 543  ILSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 641
            +LSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG
Sbjct: 886  VLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 918