BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00019821
         (3423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1380   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1348   0.0  
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...  1344   0.0  
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1341   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1325   0.0  

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1380 bits (3573), Expect = 0.0
 Identities = 696/1008 (69%), Positives = 796/1008 (78%), Gaps = 21/1008 (2%)
 Frame = +1

Query: 145  ESPGVMLRNITRKLVYSSPRFSTSFKVQFSSLGNSTNYGFLGCSSSVLYDKVSNFRPFEI 324
            + P VM RNI ++ +  +PR      V   S   S  Y FLG S  +++ ++  F  FE 
Sbjct: 35   KKPTVMWRNIAKRAIPRAPRKC----VYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEP 90

Query: 325  DSCPKNGFLDKGF------------CGLPKDRIFSGNNVGFNGLFSKSYGSVAENVAVSS 468
             SC  +GF + GF             G P       N +GF+G   KSY SVAE  AVSS
Sbjct: 91   SSCSSSGFSEMGFRRIGEISSREDAVGRPSFGCLR-NQMGFSGFCPKSYASVAE--AVSS 147

Query: 469  TDCEDE---GNXXXXXXXXXXXXDXXXXXXXXXXXXKNEGGV---KYQKLRKRQVKIETE 630
            TD E++    +            +            K E G+   +Y +LR+RQVKIETE
Sbjct: 148  TDVEEDVSASDEIQELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETE 207

Query: 631  AWVQAVREYRNLLKEMCDRSLAPNLPYMKSLFLGWFEPLTNKINEDQEKCRAGKNKASYA 810
            AW  A +EY+ LL +MC++ LAPNLPYMKSLFLGWFEPL + I ++QE CR GKNKA+YA
Sbjct: 208  AWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYA 267

Query: 811  PYFDLLPADMMAVITXXXXXXXXXXXXXXXSARVVQAACAVGEAIEQEIRIHNFLEXXXX 990
            PYFD LPADMM+VIT               S RVVQAAC +G+AIEQE+RIHNFLE    
Sbjct: 268  PYFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKR 327

Query: 991  XXXXXXXXNDEEASDIASKEDGKLRQTVTNLIKKQKQQTVRAIIKGQDPTKPWTPDAKAK 1170
                     +    D    E  KLR+ VTNL+KKQK    R I+KG D +KPW P+AKAK
Sbjct: 328  KKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAK 387

Query: 1171 VGSRLIELLLQTAYIQPPPD-QLAEGPPDIRPAFVHTFQSVTES--KETKRYGVIQCDPV 1341
            VGSRLIELL+QTAYIQPP D QLA+ PPDIRPAFVHTF++V     K  +R+GVI+CDP+
Sbjct: 388  VGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPL 447

Query: 1342 IRSGLDKTVRHMVIPYMPMLVPPTKWTGYDKGAYLFLPSYVMRIRGARQQREALKRAPKN 1521
            ++ GL++T RHMVIPY+PMLVPP KWTGYDKGA+LFLPSYVMR  GARQQREA+KRAP+N
Sbjct: 448  VKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRN 507

Query: 1522 QLDFVFEALNTLGNTKWRVHKTVLNVVDRIWNSGGRLADLVDRDDLPLPEQPDTEDEAVL 1701
            QL+ VFEALNTLGNTKWR++K + +VVDRIW  GG LADLVDR+D+PLPE+PDTEDEA L
Sbjct: 508  QLEPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQL 567

Query: 1702 KQWKWKIKRVNKENRERHSQRCDIELKLSVARKLKDEEGFFYPHNLDFRGRAYPIHPHLN 1881
            ++WKWK+K V K N ERHSQRCDIELKL+VARK+KDE+GFFYPHNLDFRGRAYP+HP+LN
Sbjct: 568  RKWKWKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLN 627

Query: 1882 HLGSDVCRGILEFAEGQPLGKSGLHWLKIHLANLYAGGVDKLSHNGRIAFTESHLDDIFD 2061
            HLGSD+CRGILEFAEG+PLG SGLHWLKIHLANL+AGGVDKLSH GRI FTE+HLDDIFD
Sbjct: 628  HLGSDLCRGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFD 687

Query: 2062 SADKPLEGRRWWLKAEDPFQCLAVCINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA 2241
            SAD+PLEG+RWWL AEDPFQ LA CINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA
Sbjct: 688  SADRPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA 747

Query: 2242 LGRDKLGADAVNLIAGSEPADVYSGIAARVLKIVQDDAKKDPAIFPEALCARNLVNQVDR 2421
            LGRD+LGA AVNL+AG +PADVYSGIAARVL I++ DA+KDPAIFP+AL AR L+NQVDR
Sbjct: 748  LGRDQLGATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDR 807

Query: 2422 KLVKQTVMTSVYGVTYIGARDQIKKRLKERGSIADDAELFRAACYAAKVTLTALGEMFET 2601
            KLVKQTVMTSVYGVTYIGARDQIK+RLKER +IADD ELF AACYAAK+TLTALGEMF+ 
Sbjct: 808  KLVKQTVMTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEMFQA 867

Query: 2602 ARGIMGWLGDCAKIIASENQPVRWITPLGLPVVQPYRKFGRHHIKTSLQVLTLQRETEKV 2781
            AR IM WLGDCAKIIASENQPVRW TPLGLPVVQPYRK GRH IKTSLQVLTLQRETE +
Sbjct: 868  ARSIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETI 927

Query: 2782 MVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLSFAGVHDSYWTHACDVDEMNRILREK 2961
            MVKRQRTAFPPNFVHSLDGSHMMMTA+ACKKAGL+FAGVHDSYWTHACDVDEMNR+LREK
Sbjct: 928  MVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREK 987

Query: 2962 FVELYEKPILENLLEGFQKSFPALSFPPLPERGDFELKDVLESLYFFN 3105
            FV+LYE PILENLLE FQ+SFPAL FPPLPERGDF+L++VLES YFFN
Sbjct: 988  FVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1348 bits (3488), Expect = 0.0
 Identities = 691/1032 (66%), Positives = 799/1032 (77%), Gaps = 16/1032 (1%)
 Frame = +1

Query: 58   MFTTKPPISFVIKTTTFDQLSSDTHLVCEESPGVMLRNITRKLVYSSPRFSTSFKVQFSS 237
            M +TK PIS  IK   F    +   +    +  +M RNI ++L   +P+     K+ FSS
Sbjct: 1    MSSTKTPISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQ-----KLLFSS 55

Query: 238  LGNSTNYGFLGCSSSVLYDKVSNFRPFEIDSCPK--NGFLDKGFCGLPKDRIFSG----N 399
               +  Y FLG     ++   + FR     SC     GF + G   LP D   S     N
Sbjct: 56   --KNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEY-LPGDEFLSRPLIKN 112

Query: 400  NVGFNGLFSKSYGSVAENVAVSSTDCE------DEGNXXXXXXXXXXXXDXXXXXXXXXX 561
             V  N    KSY SVAE VAVSSTD E      DE +                       
Sbjct: 113  QVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRM 172

Query: 562  XXKNEGGVKYQKLRKRQVKIETEAWVQAVREYRNLLKEMCDRSLAPNLPYMKSLFLGWFE 741
                 G  KYQ L++RQVK+ETEAW QA +EY+ LL +MC++ LAPNLPY+KSLFLGWFE
Sbjct: 173  LTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFE 232

Query: 742  PLTNKINEDQEKCRAGKNKASYAPYFDLLPADMMAVITXXXXXXXXXXXXXXXSARVVQA 921
            PL +KI E+QE C  GK+KA+YA YF  LPADMMAVIT               +ARVVQA
Sbjct: 233  PLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQA 292

Query: 922  ACAVGEAIEQEIRIHNFLEXXXXXXXXXXXXNDEEASDIASKEDGKLRQTVTNLIKKQKQ 1101
            A  +G+AIEQE+RIHNFLE              +E  +  ++E  KLR+ VTNL+KKQK 
Sbjct: 293  ALVIGDAIEQEVRIHNFLEKTKKQKAEKD--KQKEDGEHVTQEQEKLRKKVTNLMKKQKL 350

Query: 1102 QTVRAIIKGQDPTKPWTPDAKAKVGSRLIELLLQTAYIQPPPDQLAEGPPDIRPAFVHTF 1281
            + V  I++ QD +KPW  DA+AKVGSRLI+LLLQTAYIQPP +QLA  PPDIRPAFVH+ 
Sbjct: 351  RAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSV 410

Query: 1282 QSVTESKETK----RYGVIQCDPVIRSGLDKTVRHMVIPYMPMLVPPTKWTGYDKGAYLF 1449
            ++V  +KETK    RYG+IQCD ++  GL++T RHMVIPYMPMLVPP KWTGYDKG +L+
Sbjct: 411  RTV--AKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLY 468

Query: 1450 LPSYVMRIRGARQQREALKRAPKNQLDFVFEALNTLGNTKWRVHKTVLNVVDRIWNSGGR 1629
            LPSYVMR  GARQQREA+KRA +NQL  VFEAL+TLGNTKWR++K VL+VVDRIW  GGR
Sbjct: 469  LPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGR 528

Query: 1630 LADLVDRDDLPLPEQPDTEDEAVLKQWKWKIKRVNKENRERHSQRCDIELKLSVARKLKD 1809
            LADLVDRDD PLPE+PDTEDEA+  +W+WK+K V KENRERHSQRCDIELKL+VARK+KD
Sbjct: 529  LADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKD 588

Query: 1810 EEGFFYPHNLDFRGRAYPIHPHLNHLGSDVCRGILEFAEGQPLGKSGLHWLKIHLANLYA 1989
            EE FFYPHN+DFRGRAYP+HPHLNHLGSD+CRG+LEFAEG+PLG+SGL WLKIHLANL+A
Sbjct: 589  EESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFA 648

Query: 1990 GGVDKLSHNGRIAFTESHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLSEALRSSS 2169
            GGV+KLS  GRI FTE+H+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINLSEA+RSSS
Sbjct: 649  GGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSS 708

Query: 2170 PETTISHIPVHQDGSCNGLQHYAALGRDKLGADAVNLIAGSEPADVYSGIAARVLKIVQD 2349
            PET++SHIPVHQDGSCNGLQHYAALGRDKLGA AVNL+AG +PADVYSGIAARVL I++ 
Sbjct: 709  PETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKR 768

Query: 2350 DAKKDPAIFPEALCARNLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGSIADD 2529
            DA++DPA FP+A+ AR LVNQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKERG+IADD
Sbjct: 769  DAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADD 828

Query: 2530 AELFRAACYAAKVTLTALGEMFETARGIMGWLGDCAKIIASENQPVRWITPLGLPVVQPY 2709
            +ELF AACYAAKVTLTALGEMFE AR IM WLG+CAKIIASEN+PVRW TPLGLPVVQPY
Sbjct: 829  SELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPY 888

Query: 2710 RKFGRHHIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLSF 2889
            RK GRH IKTSLQ+LTLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVAC++AGL+F
Sbjct: 889  RKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNF 948

Query: 2890 AGVHDSYWTHACDVDEMNRILREKFVELYEKPILENLLEGFQKSFPALSFPPLPERGDFE 3069
            AGVHDSYWTHACDVD++NRILREKFVELYE PILE LLE FQ S+P L FPPLPERGDF+
Sbjct: 949  AGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFD 1008

Query: 3070 LKDVLESLYFFN 3105
            ++DVLES YFFN
Sbjct: 1009 MRDVLESPYFFN 1020


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1344 bits (3479), Expect = 0.0
 Identities = 689/1032 (66%), Positives = 798/1032 (77%), Gaps = 16/1032 (1%)
 Frame = +1

Query: 58   MFTTKPPISFVIKTTTFDQLSSDTHLVCEESPGVMLRNITRKLVYSSPRFSTSFKVQFSS 237
            M +TK PIS  IK   F    +   +    +  +M RNI ++L   +P+     K+ FSS
Sbjct: 1    MSSTKTPISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQ-----KLLFSS 55

Query: 238  LGNSTNYGFLGCSSSVLYDKVSNFRPFEIDSCPK--NGFLDKGFCGLPKDRIFSG----N 399
               +  Y FLG     ++   + FR     SC     GF + G   LP D   S     N
Sbjct: 56   --KNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEY-LPGDEFLSRPLIKN 112

Query: 400  NVGFNGLFSKSYGSVAENVAVSSTDCE------DEGNXXXXXXXXXXXXDXXXXXXXXXX 561
             V  N    KSY SVAE VAVSSTD E      DE +                       
Sbjct: 113  QVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRM 172

Query: 562  XXKNEGGVKYQKLRKRQVKIETEAWVQAVREYRNLLKEMCDRSLAPNLPYMKSLFLGWFE 741
                 G  KYQ L++RQVK+ETEAW QA +EY+ LL +MC++ LAPNLPY+KSLFLGWFE
Sbjct: 173  LTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFE 232

Query: 742  PLTNKINEDQEKCRAGKNKASYAPYFDLLPADMMAVITXXXXXXXXXXXXXXXSARVVQA 921
            PL +KI E+QE C  GK+KA+YA YF  LPADMMAVIT               +ARVVQA
Sbjct: 233  PLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQA 292

Query: 922  ACAVGEAIEQEIRIHNFLEXXXXXXXXXXXXNDEEASDIASKEDGKLRQTVTNLIKKQKQ 1101
            A  +G+AIEQE+RIHNFLE              +E  +  ++E  KLR+ VTNL+KKQK 
Sbjct: 293  ALVIGDAIEQEVRIHNFLEKTKKQKAEKD--KQKEDGEHVTQEQEKLRKKVTNLMKKQKL 350

Query: 1102 QTVRAIIKGQDPTKPWTPDAKAKVGSRLIELLLQTAYIQPPPDQLAEGPPDIRPAFVHTF 1281
            + V  I++ QD +KPW  DA+AKVGSRLI+LLLQTAYIQPP +QLA  PPDI PAFVH+ 
Sbjct: 351  RAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSV 410

Query: 1282 QSVTESKETK----RYGVIQCDPVIRSGLDKTVRHMVIPYMPMLVPPTKWTGYDKGAYLF 1449
            ++V  +KETK    RYG+IQCD ++  GL++T RHMVIPYMPMLVPP KWTGYDKG +L+
Sbjct: 411  RTV--AKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLY 468

Query: 1450 LPSYVMRIRGARQQREALKRAPKNQLDFVFEALNTLGNTKWRVHKTVLNVVDRIWNSGGR 1629
            LPSYVMR  GARQQREA+KRA +NQL  VFEAL+TLGNTKWR++K VL+VVDRIW  GGR
Sbjct: 469  LPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGR 528

Query: 1630 LADLVDRDDLPLPEQPDTEDEAVLKQWKWKIKRVNKENRERHSQRCDIELKLSVARKLKD 1809
            LADLVDRDD PLPE+PDTEDEA+L +W+WK+K V KENRERHSQRCDIELKL+VARK+KD
Sbjct: 529  LADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKD 588

Query: 1810 EEGFFYPHNLDFRGRAYPIHPHLNHLGSDVCRGILEFAEGQPLGKSGLHWLKIHLANLYA 1989
            EE FFYPHN+DFRGRAYP+HPHLNHLGSD+CRG+LEFAEG+PLG+SGL WLKIHLANL+A
Sbjct: 589  EESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFA 648

Query: 1990 GGVDKLSHNGRIAFTESHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLSEALRSSS 2169
            GGV+KLS  GRI FTE+H+DDIFDS+DKPLEGRRWWL AEDPFQCLAVCINLSEA+RSSS
Sbjct: 649  GGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSS 708

Query: 2170 PETTISHIPVHQDGSCNGLQHYAALGRDKLGADAVNLIAGSEPADVYSGIAARVLKIVQD 2349
            PET++SHIPVHQDGSCNGLQHYAALGRDKLGA AVNL+AG +PA+ YSGIAARVL I++ 
Sbjct: 709  PETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIMKR 768

Query: 2350 DAKKDPAIFPEALCARNLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGSIADD 2529
            DA++DPA FP+A+ AR LVNQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKERG+IADD
Sbjct: 769  DAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADD 828

Query: 2530 AELFRAACYAAKVTLTALGEMFETARGIMGWLGDCAKIIASENQPVRWITPLGLPVVQPY 2709
            +ELF AACYAAKVTLTALGEMFE AR IM WLG+CAKIIASEN+PVRW TPLGLPVVQPY
Sbjct: 829  SELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPY 888

Query: 2710 RKFGRHHIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLSF 2889
            RK GRH IKTSLQ+LTLQRETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVAC++AGL+F
Sbjct: 889  RKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNF 948

Query: 2890 AGVHDSYWTHACDVDEMNRILREKFVELYEKPILENLLEGFQKSFPALSFPPLPERGDFE 3069
            AGVHDSYWTHACDVD++NRILREKFVELYE PILE LLE FQ S+P L FPPLPERGDF+
Sbjct: 949  AGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFD 1008

Query: 3070 LKDVLESLYFFN 3105
            ++DVLES YFFN
Sbjct: 1009 MRDVLESPYFFN 1020


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 1341 bits (3471), Expect = 0.0
 Identities = 690/1033 (66%), Positives = 800/1033 (77%), Gaps = 17/1033 (1%)
 Frame = +1

Query: 58   MFTTKPPISFVIKTTTFDQLSSDTHLVCEESPGVMLRNITRKLVYSSPRFSTSFKVQFSS 237
            M +TK PIS  IK   F    +   +    +  +M RNI ++L   +P+     K+ FSS
Sbjct: 1    MSSTKTPISLTIKLNQFTDKPTGLDINRYHNSPIMWRNIIKQLSSRTPQ-----KLLFSS 55

Query: 238  LGNSTNYGFLGCSSSVLYDKVSNFRPFEIDSCPK--NGFLDKGFCGLPKDRIFSG----N 399
               +  Y FLG     ++   + FR     SC     GF + G   LP D   S     N
Sbjct: 56   --KNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQNLGEY-LPGDEFLSRPLLKN 112

Query: 400  NVGFNGLFS-KSYGSVAENVAVSSTDCEDEGNXXXXXXXXXXXXDXXXXXXXXXXXXKNE 576
             V  N     KSY SVAE VAVSSTD E++ +                         K  
Sbjct: 113  QVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFAFRRRKQR 172

Query: 577  ------GGVKYQKLRKRQVKIETEAWVQAVREYRNLLKEMCDRSLAPNLPYMKSLFLGWF 738
                  G  KYQ L++RQVK+ETEAW QA +EY+ LL +MC++ LAPNLPY+KSLFLGWF
Sbjct: 173  MLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 232

Query: 739  EPLTNKINEDQEKCRAGKNKASYAPYFDLLPADMMAVITXXXXXXXXXXXXXXXSARVVQ 918
            EPL +KI E+QE C  GK+KA+YA Y   LPADMMAVIT               +ARVVQ
Sbjct: 233  EPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQ 292

Query: 919  AACAVGEAIEQEIRIHNFLEXXXXXXXXXXXXNDEEASDIASKEDGKLRQTVTNLIKKQK 1098
            AA  +G+AIEQE+RIHNFLE              +E  +  ++E  KLR+ VTNL+KKQK
Sbjct: 293  AALVIGDAIEQEVRIHNFLEKTKKQKAEKD--KQKEDGEHVTQEQEKLRKKVTNLMKKQK 350

Query: 1099 QQTVRAIIKGQDPTKPWTPDAKAKVGSRLIELLLQTAYIQPPPDQLAEGPPDIRPAFVHT 1278
             + V  I++ QD +KPW  DAKAKVGSRLIELLLQTAYIQPP +QLA  PPDIRPAF+H+
Sbjct: 351  LRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHS 410

Query: 1279 FQSVTESKETK----RYGVIQCDPVIRSGLDKTVRHMVIPYMPMLVPPTKWTGYDKGAYL 1446
             ++V  +KETK    RYG+IQCD ++  GL++T RHMVIPYMPMLVPP KWTGYDKG +L
Sbjct: 411  VRTV--AKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHL 468

Query: 1447 FLPSYVMRIRGARQQREALKRAPKNQLDFVFEALNTLGNTKWRVHKTVLNVVDRIWNSGG 1626
            +LPSYVMR  GARQQREA+KRA +NQL  VFEAL+TLG+TKWR++K VL+V+DRIW  GG
Sbjct: 469  YLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGG 528

Query: 1627 RLADLVDRDDLPLPEQPDTEDEAVLKQWKWKIKRVNKENRERHSQRCDIELKLSVARKLK 1806
            RLADLVDRDD PLPE+PDTEDEA+  +W+WK+K V KENRERHSQRCDIELKL+VARK+K
Sbjct: 529  RLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMK 588

Query: 1807 DEEGFFYPHNLDFRGRAYPIHPHLNHLGSDVCRGILEFAEGQPLGKSGLHWLKIHLANLY 1986
            DEEGFFYPHN+DFRGRAYP+HPHLNHLGSD+CRG+L FAEG+PLG+SGL WLKIHLANL+
Sbjct: 589  DEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLF 648

Query: 1987 AGGVDKLSHNGRIAFTESHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLSEALRSS 2166
            AGGV+KLS  GRIAFTE+H+DDIFDSADKPLEGRRWWL AEDPFQCLAVCINLSEA+RSS
Sbjct: 649  AGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSS 708

Query: 2167 SPETTISHIPVHQDGSCNGLQHYAALGRDKLGADAVNLIAGSEPADVYSGIAARVLKIVQ 2346
            SPET+ISHIPVHQDGSCNGLQHYAALGRD+LGA AVNL+AG +PADVYSGIAARVL I++
Sbjct: 709  SPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMK 768

Query: 2347 DDAKKDPAIFPEALCARNLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGSIAD 2526
             DA++DPA FP+A+ AR LVNQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKERG+IAD
Sbjct: 769  RDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIAD 828

Query: 2527 DAELFRAACYAAKVTLTALGEMFETARGIMGWLGDCAKIIASENQPVRWITPLGLPVVQP 2706
            D+ELF AACYAAKVTLTALGEMFE AR IM WLG+CAKIIASEN+PVRW TPLGLPVVQP
Sbjct: 829  DSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQP 888

Query: 2707 YRKFGRHHIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLS 2886
            YRK GRH IKTSLQ+LTLQ+ETEKVMVKRQRTAFPPNF+HSLDGSHMMMTAVAC++AGL+
Sbjct: 889  YRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLN 948

Query: 2887 FAGVHDSYWTHACDVDEMNRILREKFVELYEKPILENLLEGFQKSFPALSFPPLPERGDF 3066
            FAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLE FQ S+P L FPPLPERGDF
Sbjct: 949  FAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDF 1008

Query: 3067 ELKDVLESLYFFN 3105
            +L+DVLES YFFN
Sbjct: 1009 DLRDVLESPYFFN 1021


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1325 bits (3430), Expect = 0.0
 Identities = 644/848 (75%), Positives = 730/848 (86%), Gaps = 5/848 (0%)
 Frame = +1

Query: 577  GGV---KYQKLRKRQVKIETEAWVQAVREYRNLLKEMCDRSLAPNLPYMKSLFLGWFEPL 747
            GGV   K+  LR+RQ+K+ETEAW +A +EYR LL +MC++ LAPNLPY+KSLFLGWFEPL
Sbjct: 133  GGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPL 192

Query: 748  TNKINEDQEKCRAGKNKASYAPYFDLLPADMMAVITXXXXXXXXXXXXXXXSARVVQAAC 927
             + I  +Q+ C+ GKN+A+YAPYFD LPADMMAVIT               SARVVQAAC
Sbjct: 193  RDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAAC 252

Query: 928  AVGEAIEQEIRIHNFLEXXXXXXXXXXXXNDEEASDIASKEDGKLRQTVTNLIKKQKQQT 1107
             +GEAIE E+RI  F+E            N +  S+  +KE  KLR+ V+ L+KKQK Q 
Sbjct: 253  HIGEAIEHEVRIQRFMEKTKKKSASSN--NPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQ 310

Query: 1108 VRAIIKGQDPTKPWTPDAKAKVGSRLIELLLQTAYIQPPPDQLAEGPPDIRPAFVHTFQS 1287
            VR I+K QD +KPW  DA  KVGSRLIELL++TAYIQPP DQL +GPPDIRPAFVHT ++
Sbjct: 311  VRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKT 370

Query: 1288 VTES--KETKRYGVIQCDPVIRSGLDKTVRHMVIPYMPMLVPPTKWTGYDKGAYLFLPSY 1461
            V +   K T+RYGVI+CDP++R GL+KT RHMVIPYMPMLVPP  WTGYDKGAYLFLPSY
Sbjct: 371  VIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSY 430

Query: 1462 VMRIRGARQQREALKRAPKNQLDFVFEALNTLGNTKWRVHKTVLNVVDRIWNSGGRLADL 1641
            VMRI GARQQREA+KRAP+  L+  FEALNTLGNTKWR++K VL V+DRIW SGGRLADL
Sbjct: 431  VMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADL 490

Query: 1642 VDRDDLPLPEQPDTEDEAVLKQWKWKIKRVNKENRERHSQRCDIELKLSVARKLKDEEGF 1821
            VDR+D+PLPE+PDTEDEA +++WKWK++ V KEN ERHSQRCDIELKL+VARK+KDE+GF
Sbjct: 491  VDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGF 550

Query: 1822 FYPHNLDFRGRAYPIHPHLNHLGSDVCRGILEFAEGQPLGKSGLHWLKIHLANLYAGGVD 2001
            FYPHNLDFRGRAYP+HP+LNHLGSD+CRGILEFAEG+PLGKSGL WLKIHLAN+YAGGVD
Sbjct: 551  FYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVD 610

Query: 2002 KLSHNGRIAFTESHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLSEALRSSSPETT 2181
            KLS+ GR+AFTE+HL+DIFDSAD+PLEGRRWWL AEDPFQCLA CINLSEALRSSSPETT
Sbjct: 611  KLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETT 670

Query: 2182 ISHIPVHQDGSCNGLQHYAALGRDKLGADAVNLIAGSEPADVYSGIAARVLKIVQDDAKK 2361
            ISH+PVHQDGSCNGLQHYAALGRDKLGA AVNL+AG +PADVYSGIAARVL I+Q DA+K
Sbjct: 671  ISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQK 730

Query: 2362 DPAIFPEALCARNLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGSIADDAELF 2541
            DPA  P AL AR L++QVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER +IAD+ E+F
Sbjct: 731  DPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVF 790

Query: 2542 RAACYAAKVTLTALGEMFETARGIMGWLGDCAKIIASENQPVRWITPLGLPVVQPYRKFG 2721
             A+CYAAK TLTALGEMFE AR IM WLGDCAK+IASEN PVRW TPLGLPVVQPYRK G
Sbjct: 791  SASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLG 850

Query: 2722 RHHIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLSFAGVH 2901
            RH IKTSLQVL+LQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC+KAGL+FAGVH
Sbjct: 851  RHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVH 910

Query: 2902 DSYWTHACDVDEMNRILREKFVELYEKPILENLLEGFQKSFPALSFPPLPERGDFELKDV 3081
            DSYWTHACDVDEMNRILREKFVELY  PILENLLEGFQKSFP L+FPPLPERGDF+L++V
Sbjct: 911  DSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREV 970

Query: 3082 LESLYFFN 3105
            LES YFFN
Sbjct: 971  LESPYFFN 978