BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00010315
         (3326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              902   0.0  
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   895   0.0  
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   785   0.0  
ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   741   0.0  
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   734   0.0  

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  902 bits (2331), Expect = 0.0
 Identities = 492/1041 (47%), Positives = 660/1041 (63%), Gaps = 3/1041 (0%)
 Frame = -2

Query: 3256 VQVPLPLRVERMIEKICFEQCQAPPDSDARKILASIGEENSIHMLTIISQRQIKTFSGFI 3077
            ++V LP  VE+M+++IC EQ Q PP++  R+ LAS+GEE+++ +L  IS  +I       
Sbjct: 1    MEVSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKI------- 53

Query: 3076 KYMLKDYKPKPPNSAFLTPQKRPPSSVSGTDGLICHSPFPKHLLRSPSSHSDKMVTPIAI 2897
                                                        R+ S+  + MV   A 
Sbjct: 54   --------------------------------------------RNLSALINYMVGKAAQ 69

Query: 2896 GGSPSTNVQTTSSPVPAHLSASPCSSLKNSYTPARMKLRFSPQFNTNRESTPTISKQWQI 2717
            G + S       SP P HL +SP S      TP + + + S             S Q   
Sbjct: 70   GDAAS------HSPTPKHLISSPSS------TPKKARRQAS-------------SPQLVA 104

Query: 2716 LFELEFRKIFLLLNYLGRKKLEDVVSEEDAYKIQQMKGYPMERFELHLWTMYGHSYFAGT 2537
            L ELEFRK FL+L+Y+G K+ ED++S E+  K+   K  PM  FE  +W   G  +    
Sbjct: 105  LGELEFRKAFLILSYIGDKRPEDLLSAEEILKL---KNLPMGVFETEVWNNLGRKFI--- 158

Query: 2536 ESTDRRKYLDWECGKTHHYHCHVWRDGSFSFKGPYXXXXXXXXXXXLGDENILIVKFEEQ 2357
            +  DR++  DW+  KTH YHCHV  DGS+ FKGPY           LGDENIL+VKF E 
Sbjct: 159  KEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAED 218

Query: 2356 ARGGSTI-IAGDHNAFYGKVAKEGILIGQRRYRFFVFKDGDRKGKKKSPITSDVKCYFIR 2180
                S++  + D NA Y K+A+EGI +G R+YRFFVFKDG ++ KKK+P TS VKCYF+ 
Sbjct: 219  VTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP-TSSVKCYFVF 277

Query: 2179 MELIAPCDVKDPFNLLNKTMHEARCLFMHLHTTPCMAKYASRCSLILSQTIKVEVNLDTV 2000
            ME  A         L  KT+HEARC+FMH H    +AKY +R SLILS+T+K++V+L TV
Sbjct: 278  MESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTV 328

Query: 1999 HIERIEDIPCQNENGINVFNEDGELLIHTDGTGFISEDLAMKCPRALLSARYRKNKQSEM 1820
            +I+RI+D P ++E+G  V++ED + LI TDGTGFISEDLA++CP  L   +Y  N  S+ 
Sbjct: 329  NIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSD- 387

Query: 1819 EDESLERKLTDTHVREPPLLMQCRLFYNGCAVKGTFLVNRKLPPGTIQIRPSMVKVEADP 1640
                             PLL+QCRLF NGCAVKGT L+NRKLPP TIQIRPSM+KVE DP
Sbjct: 388  -----------------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDP 430

Query: 1639 NFKGAMSVNSLEVVNISRKPGKSRLSKYLIALLYLGGVPEQFFLKILADALEDSQRLFSD 1460
                  +VNS+E+   S +P +S LSKYLIALL  GGVP ++F+ +L DALED+  + S 
Sbjct: 431  KLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSS 490

Query: 1459 KRSAVRASVNHATVDDNFTTARMLLSGVPLDEPCVQHRLYHLAFSERKGLREGRLPISES 1280
            KR+A+R S+    +DD+  T RM+LSG+P+DEP + H L  +   ERKGLR G+LP+++ 
Sbjct: 491  KRAALRVSLRFGEMDDSIVT-RMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDC 549

Query: 1279 YFLMGTADPTGLLNSDEVCIILDNGQISGKVLVYRYPGLHFGDIHVLNAVYLKELEDVVG 1100
            ++LMGTADPTG L SDEVCIILD+GQ+ G+VLVY++PGLHFGDIHVLNA Y++ LE+ VG
Sbjct: 550  FYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVG 609

Query: 1099 NAKYGIFFSTKGQRSVASEIANGDFDGDMYWVSKNSQLLHYFKESVPWTHMHSSPNVIHR 920
            NAKY IFF  KG RS+A E+AN DFDGDMYWVS+N QLL YF+ S PW    S+ +V  +
Sbjct: 610  NAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSK 669

Query: 919  KPSDFSCDELEHQLFELFLNTRNQNIS-MGVAADSWMAFTDRFLTL-DDNSDEXXXXXXX 746
            +P+DFS DELEH+LF+LFL TR Q  S +G+AAD+W+ F DR LTL DD SDE       
Sbjct: 670  RPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRK 729

Query: 745  XXXLIDIYYDALDAPKTGKEVKVPKQYRADLYPHYMGKGDEYHSNSVLGKICDTVDTYKS 566
               L DIYYDALDAPK+G +V V K+ +A+ +PH+MG+   YHS S+LG+I D V++++ 
Sbjct: 730  MLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQP 789

Query: 565  ERMSANEIRKLPIFELVHIPDAKMEFWKEKYDNYRQDMSAALSSKYQSETNPADDVINKY 386
            E  S  EI +LP+F +  +P A +  WK++YD YR +M+AAL    +++   A +VINKY
Sbjct: 790  ENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKY 849

Query: 385  KEILYGAADSERRTRNMDDIHVDALALYHVCYDFARSKGDVSKCNFAWKIAAPALCNFHA 206
            K+ILYGAA+ E   RN++DI  +ALA+YHV Y+F  +   VS CNF W++A  ALC  + 
Sbjct: 850  KQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYT 909

Query: 205  VNSSERSVFSCLPSVLGELLN 143
            V   E+S+  C+PSVL ++ N
Sbjct: 910  VKLGEKSMV-CVPSVLRQVFN 929


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  895 bits (2314), Expect = 0.0
 Identities = 492/1049 (46%), Positives = 661/1049 (63%), Gaps = 11/1049 (1%)
 Frame = -2

Query: 3256 VQVPLPLRVERMIEKICFEQCQAPPDSDARKILASIGEENSIHMLTIISQRQIKTFSGFI 3077
            ++V LP  VE+M+++IC EQ Q PP++  R+ LAS+GEE+++ +L  IS  +I       
Sbjct: 1    MEVSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKI------- 53

Query: 3076 KYMLKDYKPKPPNSAFLTPQKRPPSSVSGTDGLICHSPFPKHLLRSPSSHSDKMVTPIAI 2897
                                                        R+ S+  + MV   A 
Sbjct: 54   --------------------------------------------RNLSALINYMVGKAAQ 69

Query: 2896 GGSPSTNVQTTSSPVPAHLSASPCSSLKNSYTPARMKLRFSPQFNTNRESTPTISKQWQI 2717
            G + S       SP P HL +SP S      TP + + + S             S Q   
Sbjct: 70   GDAAS------HSPTPKHLISSPSS------TPKKARRQAS-------------SPQLVA 104

Query: 2716 LFELEFRKIFLLLNYLGRKKLEDVVSEEDAYKIQQMKGYPMERFELHLWTMYGHSYFAGT 2537
            L ELEFRK FL+L+Y+G  + ED++S E+  K+   K  PM  FE  +W   G  +    
Sbjct: 105  LGELEFRKAFLILSYIGELRPEDLLSAEEILKL---KNLPMGVFETEVWNNLGRKFI--- 158

Query: 2536 ESTDRRKYLDWECGKTHHYHCHVWRDGSFSFK--------GPYXXXXXXXXXXXLGDENI 2381
            +  DR++  DW+  KTH YHCHV  DGS+ FK        GPY           LGDENI
Sbjct: 159  KEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENI 218

Query: 2380 LIVKFEEQARGGSTI-IAGDHNAFYGKVAKEGILIGQRRYRFFVFKDGDRKGKKKSPITS 2204
            L+VKF E     S++  + D NA Y K+A+EGI +G R+YRFFVFKDG ++ KKK+P TS
Sbjct: 219  LLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP-TS 277

Query: 2203 DVKCYFIRMELIAPCDVKDPFNLLNKTMHEARCLFMHLHTTPCMAKYASRCSLILSQTIK 2024
             VKCYF+ ME  A         L  KT+HEARC+FMH H    +AKY +R SLILS+T+K
Sbjct: 278  SVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVK 328

Query: 2023 VEVNLDTVHIERIEDIPCQNENGINVFNEDGELLIHTDGTGFISEDLAMKCPRALLSARY 1844
            ++V+L TV+I+RI+D P ++E+G  V++ED + LI TDGTGFISEDLA++CP  L   +Y
Sbjct: 329  LDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKY 388

Query: 1843 RKNKQSEMEDESLERKLTDTHVREPPLLMQCRLFYNGCAVKGTFLVNRKLPPGTIQIRPS 1664
              N  S++ D               PLL+QCRLF NGCAVKGT L+NRKLPP TIQIRPS
Sbjct: 389  MNNGNSDVCDSRY------------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPS 436

Query: 1663 MVKVEADPNFKGAMSVNSLEVVNISRKPGKSRLSKYLIALLYLGGVPEQFFLKILADALE 1484
            M+KVE DP      +VNS+E+   S +P +S LSKYLIALL  GGVP ++F+ +L DALE
Sbjct: 437  MIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALE 496

Query: 1483 DSQRLFSDKRSAVRASVNHATVDDNFTTARMLLSGVPLDEPCVQHRLYHLAFSERKGLRE 1304
            D+  + S KR+A+R S+    +DD+  T RM+LSG+P+DEP + H L  +   ERKGLR 
Sbjct: 497  DAPSVQSSKRAALRVSLRFGEMDDSIVT-RMILSGIPIDEPFLHHCLSFMVNEERKGLRV 555

Query: 1303 GRLPISESYFLMGTADPTGLLNSDEVCIILDNGQISGKVLVYRYPGLHFGDIHVLNAVYL 1124
            G+LP+++ ++LMGTADPTG L SDEVCIILD+GQ+ G+VLVY++PGLHFGDIHVLNA Y+
Sbjct: 556  GKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYV 615

Query: 1123 KELEDVVGNAKYGIFFSTKGQRSVASEIANGDFDGDMYWVSKNSQLLHYFKESVPWTHMH 944
            + LE+ VGNAKY IFF  KG RS+A E+AN DFDGDMYWVS+N QLL YF+ S PW    
Sbjct: 616  EALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKR 675

Query: 943  SSPNVIHRKPSDFSCDELEHQLFELFLNTRNQNIS-MGVAADSWMAFTDRFLTL-DDNSD 770
            S+ +V  ++P+DFS DELEH+LF+LFL TR Q  S +G+AAD+W+ F DR LTL DD SD
Sbjct: 676  STRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSD 735

Query: 769  EXXXXXXXXXXLIDIYYDALDAPKTGKEVKVPKQYRADLYPHYMGKGDEYHSNSVLGKIC 590
            E          L DIYYDALDAPK+G +V V K+ +A+ +PH+MG+   YHS S+LG+I 
Sbjct: 736  EKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYHSTSILGQIY 795

Query: 589  DTVDTYKSERMSANEIRKLPIFELVHIPDAKMEFWKEKYDNYRQDMSAALSSKYQSETNP 410
            D V++++ E  S  EI +LP+F +  +P A +  WK++YD YR +M+AAL    +++   
Sbjct: 796  DAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEY 855

Query: 409  ADDVINKYKEILYGAADSERRTRNMDDIHVDALALYHVCYDFARSKGDVSKCNFAWKIAA 230
            A +VINKYK+ILYGAA+ E   RN++DI  +ALA+YHV Y+F  +   VS CNF W++A 
Sbjct: 856  AAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAG 915

Query: 229  PALCNFHAVNSSERSVFSCLPSVLGELLN 143
             ALC  + V   E+S+  C+PSVL ++ N
Sbjct: 916  RALCKLYTVKLGEKSMV-CVPSVLRQVFN 943


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  785 bits (2027), Expect = 0.0
 Identities = 475/1056 (44%), Positives = 653/1056 (61%), Gaps = 20/1056 (1%)
 Frame = -2

Query: 3256 VQVPLPLRVERMIEKICFEQCQAPPDSDARKILASIGEENSIHMLTIISQRQIKTFSGFI 3077
            ++V LP  VE+ +  IC    Q  PD++  + LAS+GE  ++  L  IS   ++  SGFI
Sbjct: 56   LEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFI 115

Query: 3076 KYML-KDYKPKPPNSAF-LTPQKRPPSSVSGTDGLICHSPFPKHLLRSPSSHSDKMVTPI 2903
             +++ KD    P N    ++P + P SS             P   L+SPS+ S      +
Sbjct: 116  LHLVRKDSCASPQNKMVRVSPHQSPSSSC------------PVSQLQSPSTCS------V 157

Query: 2902 AIGGSPSTNVQTTSSPVPAHLSASPCSSLKNSYTPARMKLRFSPQFNTNRESTPTISKQW 2723
            ++  SPST    +   +    +AS         TP +     S  F+++      IS Q+
Sbjct: 158  SLHQSPSTFSVCSGQGLGTAENAS-----LQPPTPEK-----SGSFSSSVLDRARIS-QF 206

Query: 2722 QILFELEFRKIFLLLNYLGRKKLEDVVSEEDAYKIQQMKGYPMERFELHLWTMYGHSYFA 2543
              L ELEFRKI LL      KK           +   + G  +ER     W  +      
Sbjct: 207  VALGELEFRKITLL------KK-----------RPWLLYGNQVER-----WLGWELVSVT 244

Query: 2542 GTESTDRR--KYLDWECGKTHHYHCHVWRDGSFSFKGPYXXXXXXXXXXXLGDENILIVK 2369
             +ES      +Y+DW+  KTH YHCHV  DGS  FKGP+           LGD+N+L+VK
Sbjct: 245  HSESLPSYLVQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVK 304

Query: 2368 F-EEQARGGSTIIAGDHNAFYGKVAKEGILIGQRRYRFFVFKDGDRKGKKKSPITSDVKC 2192
            F E+++    +  +G     Y K+A++GIL+G RRY FFVFKDG ++ KKK+P TS VKC
Sbjct: 305  FAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKC 364

Query: 2191 YFIRMELIAPCDVKDPFNLLNKTMHEARCLFMHLHTTPCMAKYASRCSLILSQTIKVEVN 2012
            YF+RME  A  D  +P+ L N+T+ EAR LFMH H    +A Y +R SLILS+TI ++++
Sbjct: 365  YFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKID 424

Query: 2011 LDTVHIERIEDIPCQNENGINVFNEDGELLIHTDGTGFISEDLAMKCPRALLSARYRKNK 1832
            L TV+++RI DIPC++  G NV   DG+ LIHTDGTGFISEDLA++CP  +   + + + 
Sbjct: 425  LSTVNVQRIGDIPCKDIYG-NVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDA 483

Query: 1831 QSE-----------MEDESLERKLTDTHVREPPLLMQCRLFYNGCAVKGTFLVNRKLPPG 1685
              +            ++++L+  L    +REPPLL+Q RLFYNG AVKGTFL+N++LPP 
Sbjct: 484  DLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQFRLFYNGLAVKGTFLLNKQLPPR 543

Query: 1684 TIQIRPSMVKVEADPNFKGAMSVNSLEVVNISRKPGKSRLSKYLIALLYLGGVPEQFFLK 1505
            TIQIR SM+KVE DP+ +   + NSLE+V  S  P ++ LS+ LIALL  GGVP ++F+ 
Sbjct: 544  TIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMN 603

Query: 1504 ILADALEDSQRLFSDKRSAVRASVNHATVDDNFTTARMLLSGVPLDEPCVQHRLYHLAFS 1325
            IL DAL+D Q +FS KR+A+R S+N+  +DD F  ARM+L+G+PLDE  +Q+RL  L   
Sbjct: 604  ILVDALKDVQGVFSSKRAALRVSINNGEMDD-FLVARMILAGIPLDESYLQYRLSVLLKE 662

Query: 1324 ERKGLREGRLPISESYFLMGTADPTGLLNSDEVCIILDNGQISGKVLVYRYPGLHFGDIH 1145
            E+K L+ GRL + E Y+LMGT DPT  L S EVC+IL NGQI+GKVLVYR PGLHFGDIH
Sbjct: 663  EKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHFGDIH 722

Query: 1144 VLNAVYLKELEDVVGNAKYGIFFSTKGQRSVASEIANGDFDGDMYWVSKNSQLLHYFKES 965
            VL A Y+++L  VVGNAKY IFFS+KG RSVA EIA GDFDGDMYWVS+NSQLL YF+  
Sbjct: 723  VLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPC 782

Query: 964  VPWTHMHSSPNVIHRKPSDFSCDELEHQLFELFLNTRNQ-NISMGVAADSWMAFTDRFLT 788
             PW    S+  V ++KP +FS DELE++LF+LFL+TR Q + +  VAAD+W+A  D+FL 
Sbjct: 783  EPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLM 842

Query: 787  L-DDNSDEXXXXXXXXXXLIDIYYDALDAPKT-GKEVKVPKQYRADLYPHYMGKG-DEYH 617
            L ++  +E          LI+IYYDALDAPK  GK+++VPK  +A   PH+M +G + Y 
Sbjct: 843  LGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYV 902

Query: 616  SNSVLGKICDTVDTYKSERMSANEIRKLPIFELVHIPDAKMEFWKEKYDNYRQDMSAALS 437
            S S+LG+I DT + Y+ E +   E++KLP FE   +P+     WK  Y+ YR+DM  A+ 
Sbjct: 903  STSILGQIFDTANMYQ-EEVPNIEVQKLPCFE-EELPEYIFMKWKFLYELYRKDMVDAMQ 960

Query: 436  SKYQSETNPADDVINKYKEILYGAADSERRTRNMDDIHVDALALYHVCYDFARSKGDVSK 257
                ++   A+  I KYKEILYGA + E   R+ ++++ +ALA+Y V YD A S+  V  
Sbjct: 961  LDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIYQVTYDHAMSR-SVRN 1019

Query: 256  CNFAWKIAAPALCNFHAVNSSERSVFSCLPSVLGEL 149
            C FAWK+A  AL   +A+  SERS F CLPSV+ E+
Sbjct: 1020 CGFAWKVAGSALFKLYAIKHSERS-FHCLPSVMREI 1054


>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 953

 Score =  741 bits (1913), Expect = 0.0
 Identities = 420/911 (46%), Positives = 576/911 (63%), Gaps = 23/911 (2%)
 Frame = -2

Query: 2812 NSYTPARMKLRFS------PQFNTNRESTPTISKQWQILFELEFRKIFLLLNYLGRKKLE 2651
            N     R++L F+       Q +  R   PT S     L ELEFRK FL+L+Y+GR+ LE
Sbjct: 54   NKIAATRIRLSFAGFPSTRQQTSPTRPPRPTPSSLLHALGELEFRKAFLILSYIGRESLE 113

Query: 2650 DVVSEEDAYKIQQMKGYPMERFELHLWTMYGHSYFAGTESTDRRKYLDWECGKTHHYHCH 2471
            + +++    KI+ +K  PM +FE  +W  +G            R+ ++W  G+TH Y C 
Sbjct: 114  NCITDA---KIRSLKDLPMAKFEKTIWEDFGEKCIYDQSD---RQLVNWNSGRTHVYQCF 167

Query: 2470 VWRDGSFSFKGPYXXXXXXXXXXXLGDENILIVKFEEQARGGS-TIIAGDHNAFYGKVAK 2294
            V+ DG+  FKGP            LGD+N+L+VKF E   G +    A + NA YGK  K
Sbjct: 168  VFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNFRTHAEEANALYGKFGK 227

Query: 2293 EGILIGQRRYRFFVFKDGDRKGKKKSPITSDVKCYFIRMELIAPCDVKDPFNLLNKTMHE 2114
            EGI +G R YRFFVFKDG  + K+K P +S VKCYF+RM+     D    + L NKT+ E
Sbjct: 228  EGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGCSADEGADYILSNKTVSE 287

Query: 2113 ARCLFMHLHTT-PCMAKYASRCSLILSQTIKVEVNLDTVHIERIEDIPCQNENGINVFNE 1937
            AR LFMH H   P + KY +R SLILS+T+K+ ++L TV +++I D  C++ NG N+  +
Sbjct: 288  ARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQKIPDEYCKDANG-NIMVD 346

Query: 1936 DGELLIHTDGTGFISEDLAMKCPRALLSARYRKNK-------QSEMEDESL---ERKLTD 1787
            + +  I TDGTGFIS DLA+ CP  +      +N          E+ED S    E +   
Sbjct: 347  NEKPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLS 406

Query: 1786 THVREPPLLMQCRLFYNGCAVKGTFLVNRKLPPGTIQIRPSMVKVEADPNFKGAMSVNSL 1607
            TH  EPPLL+QCRLF+ G A+KGT LVNRKLPP TIQ+RPSM+KVE DP+     S+NSL
Sbjct: 407  TH--EPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPSVH-MQSINSL 463

Query: 1606 EVVNISRKPGKSRLSKYLIALLYLGGVPEQFFLKILADALEDSQRLFSDKRSAVRASVNH 1427
            EVV  S KP +  LSK+LIALL  GGVP +FF+ +L   +ED+  ++S+KRSA+RAS+N 
Sbjct: 464  EVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINC 523

Query: 1426 ATVDDNFTTARMLLSGVPLDEPCVQHRLYHLAFSERKGLREGRLPISESYFLMGTADPTG 1247
               D+ +  A M+L G+PLDEP ++H L   A  E+K LR G+L + + ++LMGT DPTG
Sbjct: 524  GEKDE-YNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTG 582

Query: 1246 LLNSDEVCIILDNGQISGKVLVYRYPGLHFGDIHVLNAVYLKELEDVVGNAKYGIFFSTK 1067
             L  ++VCII +N QI G VLVYR PGLHFGDIH ++A Y+KELE  VG++KYGIFF   
Sbjct: 583  HLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRV 642

Query: 1066 GQRSVASEIANGDFDGDMYWVSKNSQLLHYFKESVPWTHMHSSPNVIHRKPSDFSCDELE 887
            G RSVA EIA GDFDGD YWVS + QLL YF++  PW       +   +KPS+FS +ELE
Sbjct: 643  GTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEELE 702

Query: 886  HQLFELFLNTRNQ-NISMGVAADSWMAFTDRFLTLDD--NSDEXXXXXXXXXXLIDIYYD 716
             +LF LFL TR Q + +MG++ +SWMA  DR LTL++  N +E          LIDIYY+
Sbjct: 703  EELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYE 762

Query: 715  ALDAPKTGKEVKVPKQYRADLYPHYMGKGDEYHSNSVLGKICDTVDTYKSERMSANEIRK 536
            ALDAPK+G++V+VP    A+L+PHYM K   + S S+LG I D V+ +    M   EI K
Sbjct: 763  ALDAPKSGRKVQVPNDLIAELFPHYMEKDKSFTSTSILGLIYDEVEIWLENDM-VGEIWK 821

Query: 535  LPIFELVHIPDAKMEFWKEKYDNYRQDMSAALSSKYQSETN-PADDVINKYKEILYG-AA 362
            LP F+ V +P + +E WK KY+ YR+DM+ AL+ K +S+++  A +V  KYKE  YG   
Sbjct: 822  LPCFD-VEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTL 880

Query: 361  DSERRTRNMDDIHVDALALYHVCYDFARSKGDVSKCNFAWKIAAPALCNFHAVNSSERSV 182
            + E   +++ DI  +ALA+Y+V Y++A  K +V +C FAWKIA  AL   + +  +E+++
Sbjct: 881  EMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIKQNEKAL 940

Query: 181  FSCLPSVLGEL 149
             +C PSV+ E+
Sbjct: 941  -NCDPSVVREI 950


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  734 bits (1894), Expect = 0.0
 Identities = 385/860 (44%), Positives = 555/860 (64%), Gaps = 4/860 (0%)
 Frame = -2

Query: 2716 LFELEFRKIFLLLNYLGRKKLEDVVSEEDAYKIQQMKGYPMERFELHLWTMYGHSYFAGT 2537
            L ELEF+K FLLL+Y+  ++L  V + ++   I+  K  PM  +E  +W   G  Y   T
Sbjct: 144  LGELEFKKAFLLLSYIPGQQLGQVTTADE---IRLWKDLPMVAYEAAVWDRLGRRYCPQT 200

Query: 2536 ESTDRRKYLDWECGKTHHYHCHVWRDGSFSFKGPYXXXXXXXXXXXLGDENILIVKFEEQ 2357
            +    R+ L W+ GKTH+Y CHV  DGS++FKGP            LGDEN+L VKF + 
Sbjct: 201  D----RRMLQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFADV 256

Query: 2356 ARGGSTIIAGDHNAFYGKVAKEGILIGQRRYRFFVFKDGDRKGKKKSPITSDVKCYFIRM 2177
             +  ST  + D    Y ++AK GI+IG RRY+FFVFKDG ++ KKK   T  VKCYFIR 
Sbjct: 257  PKNSSTY-SNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRT 315

Query: 2176 ELIAPCDVKDPFNLLNKTMHEARCLFMHLHTTPCMAKYASRCSLILSQTIKVEVNLDTVH 1997
            +  A CD+++P+    K++HEAR  FMH+H  P +A Y +R SLILS+T  +EV++  + 
Sbjct: 316  DSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGIT 375

Query: 1996 IERIEDIPCQNENGINVFNEDGELLIHTDGTGFISEDLAMKCPRALLSARYRKNKQSEME 1817
             + I+DI C +++G +V +++ +  IH+DGTG+ISEDLA  CP  +   +  +++     
Sbjct: 376  FDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSEN---- 431

Query: 1816 DESLERKLTDTHVREPPLLMQCRLFYNGCAVKGTFLVNRKLPPGTIQIRPSMVKVEADPN 1637
                   + +   ++PPLL+Q R+FY+G AVKGTFL+N+KL P T+Q+RPSM+KV  DP+
Sbjct: 432  -------IQEACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPS 484

Query: 1636 FKGAMSVNSLEVVNISRKPGKSRLSKYLIALLYLGGVPEQFFLKILADALEDSQRLFSDK 1457
                 + N+LEVV  S  P +++LSK L+ALL  GG+P +FFL IL + LE+S+ +F +K
Sbjct: 485  LSNFSTFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNK 544

Query: 1456 RSAVRASVNHATVDDNFTTARMLLSGVPLDEPCVQHRLYHLAFSERKGLREGRLPISESY 1277
             +A+  ++N+  +DD    A+M+L G+PLDEP +++ L  L  +E+  L+ GRLP++ESY
Sbjct: 545  HAALNVALNYGEMDDQ-NAAQMILVGIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESY 603

Query: 1276 FLMGTADPTGLLNSDEVCIILDNGQISGKVLVYRYPGLHFGDIHVLNAVYLKELEDVVGN 1097
            +LMGT DPTG L  DEVC+IL++GQISG+VLVYR PGLHFGDIH+L A Y+K LE+ VGN
Sbjct: 604  YLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGN 663

Query: 1096 AKYGIFFSTKGQRSVASEIANGDFDGDMYWVSKNSQLLHYFKESVPWTHM-HSSPNVIHR 920
            +KY +FF  KG RS+  EIA GDFDGDMY++S+N +LL +FK S PW  +   S +   R
Sbjct: 664  SKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGR 723

Query: 919  KPSDFSCDELEHQLFELFLNTR-NQNISMGVAADSWMAFTDRFLTL-DDNSDEXXXXXXX 746
             PS  S +ELE +LFE+FL    + +  +G+AADSW+   DR L L D+ ++E       
Sbjct: 724  APSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKK 783

Query: 745  XXXLIDIYYDALDAPKTGKEVKVPKQYRADLYPHYMGKGDEYHSNSVLGKICDTVDTYKS 566
               LIDIYYDALDAPK G +V +P + R D++PHYM +  ++ S S+LG I D V +  +
Sbjct: 784  MLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKKFKSTSILGLIYDFVKSQTT 843

Query: 565  ERMS-ANEIRKLPIFELVHIPDAKMEFWKEKYDNYRQDMSAALSSKYQSETNPADDVINK 389
            E  + ++EI KLP FE   + +  ME  +  YDNYR +M+ A+ +    +   A++VI +
Sbjct: 844  EEPTPSSEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEMTQAMKT---DKDESANEVIQR 900

Query: 388  YKEILYGAADSERRTRNMDDIHVDALALYHVCYDFARSKGDVSKCNFAWKIAAPALCNFH 209
            YK+  YGAA  E   +++++++  AL LY + YD+A   G VSKC F WK+A P LC F+
Sbjct: 901  YKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAG-VSKCGFVWKVAGPVLCRFY 959

Query: 208  AVNSSERSVFSCLPSVLGEL 149
             +   +     C PSVL EL
Sbjct: 960  LMKKMQEKSLVCAPSVLKEL 979