BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00009175
         (1035 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   327   3e-87
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   324   2e-86
gb|AFK38034.1| unknown [Lotus japonicus]                              318   1e-84
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   315   1e-83
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   315   1e-83

>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  327 bits (838), Expect = 3e-87
 Identities = 163/194 (84%), Positives = 180/194 (92%)
 Frame = +2

Query: 74  MAMTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTK 253
           M +TEEEI RL RIRKTV+QML DRGY VGD E ++T+ QF  +YG+NMKREDLVI+KTK
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 254 KNDPSDQIYVFYPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIAEISSK 433
           +ND SDQIYVF+PEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS+K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 434 FNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVKETQLPRIQLTDPVARYYG 613
           F+LEVFQEAELLVNIKEHVLVPEHQVL+ +EKKTLLERYTVKETQLPRIQ+TDP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 614 LQRGQVVKIIRPSE 655
           L+RGQVVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  324 bits (831), Expect = 2e-86
 Identities = 160/194 (82%), Positives = 181/194 (93%)
 Frame = +2

Query: 74  MAMTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTK 253
           M+ +EEEI+RLFRIRKTV+QML DRGY VGD E  +TK+QF+ ++G+NMKREDLVI+K K
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 254 KNDPSDQIYVFYPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIAEISSK 433
           + D SDQIYVF+PEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS+K
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 434 FNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVKETQLPRIQLTDPVARYYG 613
           F+LEVFQEAELLVNIKEHVLVPEHQVLT +EKKTLLERYTVKETQLPRIQ++DP+ARY+G
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFG 180

Query: 614 LQRGQVVKIIRPSE 655
           L+RGQVVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score =  318 bits (815), Expect = 1e-84
 Identities = 156/194 (80%), Positives = 177/194 (91%)
 Frame = +2

Query: 74  MAMTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTK 253
           MA+TEE+I +L RIRKTV+QML DR YLVGD E  +++++F  +YGDNMKREDL I+KTK
Sbjct: 1   MALTEEDITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTK 60

Query: 254 KNDPSDQIYVFYPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIAEISSK 433
           K+ PSDQIYVF+P+EPKVGVKTMKTYTNRM SENVFRAILV Q NLTPFA+TCI+E+SSK
Sbjct: 61  KDGPSDQIYVFFPDEPKVGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSK 120

Query: 434 FNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVKETQLPRIQLTDPVARYYG 613
           F LEVFQEAELLVNIKEHVLVPEHQ+L + EKKTLLERYTVKETQLPRIQ+TDPVARYYG
Sbjct: 121 FQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLPRIQITDPVARYYG 180

Query: 614 LQRGQVVKIIRPSE 655
           L+RGQVVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  315 bits (807), Expect = 1e-83
 Identities = 152/192 (79%), Positives = 178/192 (92%)
 Frame = +2

Query: 80  MTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTKKN 259
           +TEEE+ RL+RI+KT++QML DRGY + D+E  +TK QF++++GDNMKREDLV  K K+N
Sbjct: 2   LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 61

Query: 260 DPSDQIYVFYPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIAEISSKFN 439
           D SDQ+Y+F+P+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCI+EISSKF+
Sbjct: 62  DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFH 121

Query: 440 LEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVKETQLPRIQLTDPVARYYGLQ 619
           LEVFQEAE+LVNIKEHVLVPEHQVLT +EKKTLLERYTVKETQLPRIQ+TDP+ARY+GL+
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLK 181

Query: 620 RGQVVKIIRPSE 655
           RGQVVKIIRPSE
Sbjct: 182 RGQVVKIIRPSE 193


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  315 bits (807), Expect = 1e-83
 Identities = 152/192 (79%), Positives = 178/192 (92%)
 Frame = +2

Query: 80  MTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTKKN 259
           +TEEEI RL+RI+KT++QML DRGY + D+E  +TK QF++++GDNMKREDLV  K K+N
Sbjct: 2   LTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRN 61

Query: 260 DPSDQIYVFYPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIAEISSKFN 439
           D SDQ+Y+F+P+E KVGVKTMK YTNRMKSENV+RAILVVQQNLTPFARTCI+EISSKF+
Sbjct: 62  DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFH 121

Query: 440 LEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVKETQLPRIQLTDPVARYYGLQ 619
           LEVFQEAE+LVNIKEHVLVPEHQVLT +EKKTLLERYTVKETQLPRIQ+TDP+ARY+GL+
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLK 181

Query: 620 RGQVVKIIRPSE 655
           RGQVVKIIRPSE
Sbjct: 182 RGQVVKIIRPSE 193