BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00006012
         (5350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              524   e-145
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   524   e-145
ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arab...   476   e-131
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   475   e-131
ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arab...   468   e-128

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  524 bits (1349), Expect = e-145
 Identities = 275/542 (50%), Positives = 361/542 (66%), Gaps = 1/542 (0%)
 Frame = -1

Query: 1930 PLLIQCRLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTKHSFNSLEVVAIS 1751
            PLLIQCRLFNNG AVKGTLL+NRKL   TIQIR SMIKVE D  L    + NS+E+   S
Sbjct: 388  PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTS 447

Query: 1750 RKPKRCTLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWNDRENV 1571
             +P+R  LSK LIALLS+GGVP ++F+N+L+ ALE+   +   + AAL+   ++ + ++ 
Sbjct: 448  NQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDD- 506

Query: 1570 DLMRRMLLSGIALDEPCLHNCLTHLASEAKQKLQRGKLPISESYYLMGTADPTGLLENDQ 1391
             ++ RM+LSGI +DEP LH+CL+ + +E ++ L+ GKLP+++ +YLMGTADPTG L++D+
Sbjct: 507  SIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDE 566

Query: 1390 VCVILGGGQVTGDVLVYRNPGLHFGDIHVLKATYVESITDVVGNAKYAIFFSVKGERSMA 1211
            VC+IL  GQV G VLVY++PGLHFGDIHVL ATYVE++ + VGNAKYAIFF +KG RS+A
Sbjct: 567  VCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLA 626

Query: 1210 SEIGDGDLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKVSEFSCEQLEQALMQQ 1031
             E+ + D DGDMYWVS+N +LL YF+AS PW R     H    + ++FS ++LE  L Q 
Sbjct: 627  DEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQL 686

Query: 1030 YLIIRNQXXXXXXXXXXXXXXXXXXXXNIAAAADSWLAFMDRLLILGDNNPCETEHMKKT 851
            +L  R Q                     I  AAD+WL FMDRLL L D+   E E +K+ 
Sbjct: 687  FLTTRFQTSSA-----------------IGMAADNWLVFMDRLLTLRDDCSDEKECLKRK 729

Query: 850  MLHLVDIYYSTLDAAKSGKKVDFPKELKAELFPHHMERTNMYASTSVLGLIYDAVEPRQT 671
            ML L DIYY  LDA KSG KV+  KELKAE FPH M R + Y STS+LG IYDAVE  Q 
Sbjct: 730  MLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQP 789

Query: 670  QTASTGDIWKRRNFKEAKVPFECLMLWKERYNDYRKEVCNAMKSDEFTRASIDI-IIQKY 494
            +  ST +IW+   F    VP  CL  WK+RY+ YR E+  A++    T+      +I KY
Sbjct: 790  ENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKY 849

Query: 493  KQMLYGAKELEQSKCEMNDIYDDALAIHHVVYDYANSVQDAGKCLFAWKVAGDALCKFHA 314
            KQ+LYGA E E+S   + DI+D+ALAI+HV Y++  +      C F W+VAG ALCK + 
Sbjct: 850  KQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYT 909

Query: 313  RK 308
             K
Sbjct: 910  VK 911



 Score =  285 bits (728), Expect = 1e-73
 Identities = 155/286 (54%), Positives = 202/286 (70%), Gaps = 8/286 (2%)
 Frame = -2

Query: 4878 AFLLLSYIGRNKIVDIMSLNEADKLVTLNDLPMETFEEYIWSNYGRRYLGEDSPDRINHQ 4699
            AFL+LSYIG  +  D++S   A++++ L +LPM  FE  +W+N GR+++ E+  DR    
Sbjct: 113  AFLILSYIGDKRPEDLLS---AEEILKLKNLPMGVFETEVWNNLGRKFIKEE--DRQRSF 167

Query: 4698 DWDSRKTHLFYCYVYQDGTYSFKGPYIDTTKTHLQRALGDENILIVRFYE-----CDINI 4534
            DWDS KTH+++C+V  DG+Y FKGPY++ T+THLQR LGDENIL+V+F E       +N 
Sbjct: 168  DWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNC 227

Query: 4533 S-DYSAMCTKIAKRGILVGLRLYRHFGFKDGGREEKKKNPFLSSVKFYFVRMESIAPSDK 4357
            S D +A   KIA+ GI VGLR YR F FKDGG+EEKKKNP  SSVK YFV MES A    
Sbjct: 228  STDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP-TSSVKCYFVFMESSA---- 282

Query: 4356 NATYILANKTIREARCLFMHIHMTSSMAKYASRFSLILSKTIKLQVDLDSVLIEVIDDIP 4177
                 L+ KT+ EARC+FMH HM SS+AKY +RFSLILSKT+KL VDL +V I+ IDD P
Sbjct: 283  -----LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEP 337

Query: 4176 CRDHNGDVF--EDGERLIHTDGTGYIAEDLAMKCPKDIFSAKYVKD 4045
             RD +G V   ED + LI TDGTG+I+EDLA++CP ++   KY+ +
Sbjct: 338  GRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNN 383


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  524 bits (1349), Expect = e-145
 Identities = 275/542 (50%), Positives = 361/542 (66%), Gaps = 1/542 (0%)
 Frame = -1

Query: 1930 PLLIQCRLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTKHSFNSLEVVAIS 1751
            PLLIQCRLFNNG AVKGTLL+NRKL   TIQIR SMIKVE D  L    + NS+E+   S
Sbjct: 402  PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTS 461

Query: 1750 RKPKRCTLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWNDRENV 1571
             +P+R  LSK LIALLS+GGVP ++F+N+L+ ALE+   +   + AAL+   ++ + ++ 
Sbjct: 462  NQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDD- 520

Query: 1570 DLMRRMLLSGIALDEPCLHNCLTHLASEAKQKLQRGKLPISESYYLMGTADPTGLLENDQ 1391
             ++ RM+LSGI +DEP LH+CL+ + +E ++ L+ GKLP+++ +YLMGTADPTG L++D+
Sbjct: 521  SIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDE 580

Query: 1390 VCVILGGGQVTGDVLVYRNPGLHFGDIHVLKATYVESITDVVGNAKYAIFFSVKGERSMA 1211
            VC+IL  GQV G VLVY++PGLHFGDIHVL ATYVE++ + VGNAKYAIFF +KG RS+A
Sbjct: 581  VCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLA 640

Query: 1210 SEIGDGDLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKVSEFSCEQLEQALMQQ 1031
             E+ + D DGDMYWVS+N +LL YF+AS PW R     H    + ++FS ++LE  L Q 
Sbjct: 641  DEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQL 700

Query: 1030 YLIIRNQXXXXXXXXXXXXXXXXXXXXNIAAAADSWLAFMDRLLILGDNNPCETEHMKKT 851
            +L  R Q                     I  AAD+WL FMDRLL L D+   E E +K+ 
Sbjct: 701  FLTTRFQTSSA-----------------IGMAADNWLVFMDRLLTLRDDCSDEKECLKRK 743

Query: 850  MLHLVDIYYSTLDAAKSGKKVDFPKELKAELFPHHMERTNMYASTSVLGLIYDAVEPRQT 671
            ML L DIYY  LDA KSG KV+  KELKAE FPH M R + Y STS+LG IYDAVE  Q 
Sbjct: 744  MLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQP 803

Query: 670  QTASTGDIWKRRNFKEAKVPFECLMLWKERYNDYRKEVCNAMKSDEFTRASIDI-IIQKY 494
            +  ST +IW+   F    VP  CL  WK+RY+ YR E+  A++    T+      +I KY
Sbjct: 804  ENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKY 863

Query: 493  KQMLYGAKELEQSKCEMNDIYDDALAIHHVVYDYANSVQDAGKCLFAWKVAGDALCKFHA 314
            KQ+LYGA E E+S   + DI+D+ALAI+HV Y++  +      C F W+VAG ALCK + 
Sbjct: 864  KQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYT 923

Query: 313  RK 308
             K
Sbjct: 924  VK 925



 Score =  278 bits (710), Expect = 2e-71
 Identities = 156/299 (52%), Positives = 204/299 (68%), Gaps = 16/299 (5%)
 Frame = -2

Query: 4878 AFLLLSYIGRNKIVDIMSLNEADKLVTLNDLPMETFEEYIWSNYGRRYLGEDSPDRINHQ 4699
            AFL+LSYIG  +  D++S   A++++ L +LPM  FE  +W+N GR+++ E+  DR    
Sbjct: 113  AFLILSYIGELRPEDLLS---AEEILKLKNLPMGVFETEVWNNLGRKFIKEE--DRQRSF 167

Query: 4698 DWDSRKTHLFYCYVYQDGTYSFK--------GPYIDTTKTHLQRALGDENILIVRFYE-- 4549
            DWDS KTH+++C+V  DG+Y FK        GPY++ T+THLQR LGDENIL+V+F E  
Sbjct: 168  DWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAEDV 227

Query: 4548 ---CDINIS-DYSAMCTKIAKRGILVGLRLYRHFGFKDGGREEKKKNPFLSSVKFYFVRM 4381
                 +N S D +A   KIA+ GI VGLR YR F FKDGG+EEKKKNP  SSVK YFV M
Sbjct: 228  TDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP-TSSVKCYFVFM 286

Query: 4380 ESIAPSDKNATYILANKTIREARCLFMHIHMTSSMAKYASRFSLILSKTIKLQVDLDSVL 4201
            ES A         L+ KT+ EARC+FMH HM SS+AKY +RFSLILSKT+KL VDL +V 
Sbjct: 287  ESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVN 337

Query: 4200 IEVIDDIPCRDHNGDVF--EDGERLIHTDGTGYIAEDLAMKCPKDIFSAKYVKDQQFEV 4030
            I+ IDD P RD +G V   ED + LI TDGTG+I+EDLA++CP ++   KY+ +   +V
Sbjct: 338  IQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDV 396


>ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| RNA-dependent RNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 977

 Score =  476 bits (1224), Expect = e-131
 Identities = 258/547 (47%), Positives = 349/547 (63%), Gaps = 2/547 (0%)
 Frame = -1

Query: 1939 REPPLLIQCRLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTKHSFNSLEVV 1760
            ++PPLLIQ R+F +G AVKGT L+N+KL   T+Q+R SMIKV  D +L    +FN+LEVV
Sbjct: 434  QDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVV 493

Query: 1759 AISRKPKRCTLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWNDR 1580
              S  PKR  LSKNL+ALLS+GG+P +FFL+IL   LEE++ I  ++ AAL     + + 
Sbjct: 494  TTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEM 553

Query: 1579 ENVDLMRRMLLSGIALDEPCLHNCLTHLASEAKQKLQRGKLPISESYYLMGTADPTGLLE 1400
            ++ +  + M+L GI LDEP L N L+ L    K  L+ GKLP++ESYYLMGT DPTG L+
Sbjct: 554  DDQNAAQ-MILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALK 612

Query: 1399 NDQVCVILGGGQVTGDVLVYRNPGLHFGDIHVLKATYVESITDVVGNAKYAIFFSVKGER 1220
             D+VCVIL  GQ++G+VLVYRNPGLHFGDIH+LKATYV+++ + VGN+K+A+FF  KG R
Sbjct: 613  EDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPR 672

Query: 1219 SMASEIGDGDLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKV-SEFSCEQLEQA 1043
            S+  EI  GD DGDMY++S+NP+LL  F+ S PW    P       +  S+ S E+LE+ 
Sbjct: 673  SLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEE 732

Query: 1042 LMQQYLIIRNQXXXXXXXXXXXXXXXXXXXXNIAAAADSWLAFMDRLLILGDNNPCETEH 863
            L + +L                          I  AADSWL  MDR LILGD+   E   
Sbjct: 733  LFEMFL-----------------TAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAE 775

Query: 862  MKKTMLHLVDIYYSTLDAAKSGKKVDFPKELKAELFPHHMERTNMYASTSVLGLIYDAVE 683
            MKK ML L+DIYY  LDA K G KV  P +LK ++FPH+MER   + STS+LGLI+D V+
Sbjct: 776  MKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKKFQSTSILGLIFDFVK 835

Query: 682  PRQTQTAS-TGDIWKRRNFKEAKVPFECLMLWKERYNDYRKEVCNAMKSDEFTRASIDII 506
             + T+  S + +I K   F++  V    +   +  Y++YR E+  AMK+D+    S + +
Sbjct: 836  SQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKTDK--DESANEV 893

Query: 505  IQKYKQMLYGAKELEQSKCEMNDIYDDALAIHHVVYDYANSVQDAGKCLFAWKVAGDALC 326
            IQ+YKQ  YGA   E SK  + ++Y  ALA++ +VYDYA       KC F WKVAG  LC
Sbjct: 894  IQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHA-GVSKCRFVWKVAGPVLC 952

Query: 325  KFHARKE 305
            +F+  K+
Sbjct: 953  RFYLNKK 959



 Score =  226 bits (577), Expect = 4e-56
 Identities = 126/293 (43%), Positives = 175/293 (59%), Gaps = 12/293 (4%)
 Frame = -2

Query: 4875 FLLLSYIGRNKIVDIMSLNEADKLVTLNDLPMETFEEYIWSNYGRRYLGEDSPDRINHQD 4696
            FLLLSYI    +  +++   AD++    DLPM  +E  +W   GR Y  +     +    
Sbjct: 143  FLLLSYIPGQHVGQVIT---ADEIRLWKDLPMVEYEAAVWDRLGRHYCPQKDRRMLQ--- 196

Query: 4695 WDSRKTHLFYCYVYQDGTYSFK------GPYIDTTKTHLQRALGDENILIVRFYECDINI 4534
            WDS KTH + C V  +G+Y+FK      GP ++ T THL + LGD+N+L V+F +   + 
Sbjct: 197  WDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSS 256

Query: 4533 SDYSA----MCTKIAKRGILVGLRLYRHFGFKDGGREEKKKNPFLSSVKFYFVRMESIAP 4366
            S YS         IAK GI++GLR Y+ F FKDGG+EEKKK+     VK YF+R +S A 
Sbjct: 257  STYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAF 316

Query: 4365 SDKNATYILANKTIREARCLFMHIHMTSSMAKYASRFSLILSKTIKLQVDLDSVLIEVID 4186
             D    YIL  K+I EAR  FMH+H   ++A Y +RFSLILSKT  L+VD+  +  + ID
Sbjct: 317  YDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQID 376

Query: 4185 DIPCRDHNG-DVFEDGER-LIHTDGTGYIAEDLAMKCPKDIFSAKYVKDQQFE 4033
            DI C D +G DV +  ++  IH+DGTGYI+EDLA  CP +IF  K ++ +  +
Sbjct: 377  DIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQ 429


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  475 bits (1223), Expect = e-131
 Identities = 257/547 (46%), Positives = 349/547 (63%), Gaps = 2/547 (0%)
 Frame = -1

Query: 1939 REPPLLIQCRLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTKHSFNSLEVV 1760
            ++PPLLIQ R+F +G AVKGT L+N+KL   T+Q+R SMIKV  D +L    +FN+LEVV
Sbjct: 438  QDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVV 497

Query: 1759 AISRKPKRCTLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWNDR 1580
              S  P+R  LSKNL+ALLS+GG+P +FFL+IL   LEE++ I  ++ AAL     + + 
Sbjct: 498  TTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEM 557

Query: 1579 ENVDLMRRMLLSGIALDEPCLHNCLTHLASEAKQKLQRGKLPISESYYLMGTADPTGLLE 1400
            ++ +  + M+L GI LDEP L N L+ L    K  L+ G+LP++ESYYLMGT DPTG L+
Sbjct: 558  DDQNAAQ-MILVGIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELK 616

Query: 1399 NDQVCVILGGGQVTGDVLVYRNPGLHFGDIHVLKATYVESITDVVGNAKYAIFFSVKGER 1220
             D+VCVIL  GQ++G+VLVYRNPGLHFGDIH+LKATYV+++ + VGN+KYA+FF  KG R
Sbjct: 617  EDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPR 676

Query: 1219 SMASEIGDGDLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKV-SEFSCEQLEQA 1043
            S+  EI  GD DGDMY++S+NP+LL +F+ S PW    P       +  S+ S E+LE+ 
Sbjct: 677  SLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEE 736

Query: 1042 LMQQYLIIRNQXXXXXXXXXXXXXXXXXXXXNIAAAADSWLAFMDRLLILGDNNPCETEH 863
            L + +L                          I  AADSWL  MDRLLILGD    E   
Sbjct: 737  LFEMFL-----------------KAGFHASNVIGIAADSWLTIMDRLLILGDERAEEKAE 779

Query: 862  MKKTMLHLVDIYYSTLDAAKSGKKVDFPKELKAELFPHHMERTNMYASTSVLGLIYDAVE 683
            MKK ML L+DIYY  LDA K G KV  P EL+ ++FPH+MER   + STS+LGLIYD V+
Sbjct: 780  MKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKKFKSTSILGLIYDFVK 839

Query: 682  PRQTQTAS-TGDIWKRRNFKEAKVPFECLMLWKERYNDYRKEVCNAMKSDEFTRASIDII 506
             + T+  + + +I K   F++  V    +   +  Y++YR E+  AMK+D+    S + +
Sbjct: 840  SQTTEEPTPSSEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEMTQAMKTDK--DESANEV 897

Query: 505  IQKYKQMLYGAKELEQSKCEMNDIYDDALAIHHVVYDYANSVQDAGKCLFAWKVAGDALC 326
            IQ+YKQ  YGA   E SK  + ++Y  AL ++ +VYDYA       KC F WKVAG  LC
Sbjct: 898  IQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHA-GVSKCGFVWKVAGPVLC 956

Query: 325  KFHARKE 305
            +F+  K+
Sbjct: 957  RFYLMKK 963



 Score =  244 bits (623), Expect = 2e-61
 Identities = 130/288 (45%), Positives = 178/288 (61%), Gaps = 6/288 (2%)
 Frame = -2

Query: 4878 AFLLLSYIGRNKIVDIMSLNEADKLVTLNDLPMETFEEYIWSNYGRRYLGEDSPDRINHQ 4699
            AFLLLSYI   ++  + +   AD++    DLPM  +E  +W   GRRY  +     +   
Sbjct: 152  AFLLLSYIPGQQLGQVTT---ADEIRLWKDLPMVAYEAAVWDRLGRRYCPQTDRRMLQ-- 206

Query: 4698 DWDSRKTHLFYCYVYQDGTYSFKGPYIDTTKTHLQRALGDENILIVRFYECDINISDYSA 4519
             WDS KTH + C+V  DG+Y+FKGP ++ T THL + LGDEN+L V+F +   N S YS 
Sbjct: 207  -WDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFADVPKNSSTYSN 265

Query: 4518 ----MCTKIAKRGILVGLRLYRHFGFKDGGREEKKKNPFLSSVKFYFVRMESIAPSDKNA 4351
                   +IAK GI++GLR Y+ F FKDGG+EEKKK+     VK YF+R +S A  D   
Sbjct: 266  DRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTASCDMEN 325

Query: 4350 TYILANKTIREARCLFMHIHMTSSMAKYASRFSLILSKTIKLQVDLDSVLIEVIDDIPCR 4171
             YI   K+I EAR  FMH+H   ++A Y +RFSLILSKT  L+VD+  +  + IDDI C 
Sbjct: 326  PYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCH 385

Query: 4170 DHNG-DVFEDGER-LIHTDGTGYIAEDLAMKCPKDIFSAKYVKDQQFE 4033
            D +G DV +  ++  IH+DGTGYI+EDLA  CP +IF  K ++ +  +
Sbjct: 386  DQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSENIQ 433


>ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| RNA-dependent RNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 992

 Score =  468 bits (1203), Expect = e-128
 Identities = 260/558 (46%), Positives = 343/558 (61%), Gaps = 5/558 (0%)
 Frame = -1

Query: 1939 REPPLLIQCRLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTKHSFNSLEVV 1760
            +EPPLLIQ R+F NG AVKGT L N+KL   T+Q+R SMIKV  D TL    +FNSLEVV
Sbjct: 447  QEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVV 506

Query: 1759 AISRKPKRCTLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWNDR 1580
              S  P++  LS+NL+ALLS+GGVP DFFLNIL   LEE++ I     AA +    + D 
Sbjct: 507  TTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDD 566

Query: 1579 ENVDLMRRMLLSGIALDEPCLHNCLTHLASEAKQKLQRGKLPISESYYLMGTADPTGLLE 1400
            +       M+L GI LDEP L + L++L    +  L+ G+ PI ESYY+MGT DPTG L+
Sbjct: 567  QYT---ADMILVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELK 623

Query: 1399 NDQVCVILGGGQVTGDVLVYRNPGLHFGDIHVLKATYVESITDVVGNAKYAIFFSVKGER 1220
             +++CVIL  GQ++GDVLVYRNPGLHFGDIHVLKATYV+++ D VGNAK+A+FF  KG R
Sbjct: 624  ENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPR 683

Query: 1219 SMASEIGDGDLDGDMYWVSQNPKLLGYFQASPPW-KRTYPVPHGLQSKVSEFSCEQLEQA 1043
            S+  EI  GD DGDMY++S+NPKLL +F+ S PW   + P       K SE S E+LE+ 
Sbjct: 684  SLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEE 743

Query: 1042 LMQQYLIIRNQXXXXXXXXXXXXXXXXXXXXNIAAAADSWLAFMDRLLILGDNNPCETEH 863
            L + +L  R                       I  AAD WL  MD  L LGD +  E   
Sbjct: 744  LFKMFLKAR-----------------FCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYE 786

Query: 862  MKKTMLHLVDIYYSTLDAAKSGKKVDFPKELKAELFPHHMER--TNMYASTSVLGLIYDA 689
             KK +L L+DIYY  LDA K G KVD P +L+ + FPH+MER     + STS+LGLI+D 
Sbjct: 787  RKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDT 846

Query: 688  VEPRQTQTASTGDIWKRRNFKEAKVPFECLMLWKERYNDYRKEVCNA-MKSDEFTRASI- 515
            V+    +     +I K   F++  VP   +  +   Y +YR E+  A M++D+  R  + 
Sbjct: 847  VDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLT 906

Query: 514  DIIIQKYKQMLYGAKELEQSKCEMNDIYDDALAIHHVVYDYANSVQDAGKCLFAWKVAGD 335
            + +IQ+YKQ  YGA   E S   + ++Y  ALA+++VVYDYA   +   KC FAW VAG 
Sbjct: 907  NEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQ-EGVAKCTFAWNVAGP 965

Query: 334  ALCKFHARKET*ELLVLS 281
             LCKF+ +K   + +V S
Sbjct: 966  VLCKFYLKKTKDKSVVAS 983



 Score =  233 bits (593), Expect = 6e-58
 Identities = 128/287 (44%), Positives = 176/287 (61%), Gaps = 5/287 (1%)
 Frame = -2

Query: 4878 AFLLLSYIGRNKIVDIMSLNEADKLVTLNDLPMETFEEYIWSNYGRRYLGEDSPDRINHQ 4699
            AFLLLSYIG   +V+   +   D++    DLPM ++E  +W+  G+RY      +R    
Sbjct: 151  AFLLLSYIGGESLVE--EVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPK--ERRRPL 206

Query: 4698 DWDSRKTHLFYCYVYQDGTYSFKGPYIDTTKTHLQRALGDENILIVRFYEC---DINISD 4528
            + DS  TH + C+V  DG+Y FKG  ++ T THL + LGD+N+L V+F +    +   +D
Sbjct: 207  EGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVLGVETYCND 266

Query: 4527 YSAMCTKIAKRGILVGLRLYRHFGFKDGGREEKKKNPFLSSVKFYFVRMESIAPSDKNAT 4348
              +    IAK GI+VGLR YR F FKDGG+EEKKK+     VK YF+R +S A  D    
Sbjct: 267  LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326

Query: 4347 YILANKTIREARCLFMHIHMTSSMAKYASRFSLILSKTIKLQVDLDSVLIEVIDDIPCRD 4168
            YI A K++ EAR  FMH++  SS+  Y SRFSLILSKT  L+VD+  +  E IDDI C D
Sbjct: 327  YIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHD 386

Query: 4167 HNG-DVFE-DGERLIHTDGTGYIAEDLAMKCPKDIFSAKYVKDQQFE 4033
             +  DV + +G+  IH+DGTGYI+EDLA  CP +IF  K ++    +
Sbjct: 387  QDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQ 433