BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00005988
         (331 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   146   1e-33
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   143   1e-32
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              136   2e-30
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   136   2e-30
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   136   2e-30

>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  146 bits (369), Expect = 1e-33
 Identities = 64/99 (64%), Positives = 84/99 (84%)
 Frame = +1

Query: 1   IGEITVQPGYDPSKKGDGDWRYASLKFGKVKLDPPTFFTGEKFSTDNAIDFVDFYPRHAR 180
           +GEI V+PGYDPSK+GDGDW++AS+KFGKV L+ P F+ GEKFS     +++D  PRHAR
Sbjct: 100 VGEIHVEPGYDPSKRGDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHAR 159

Query: 181 LQNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKEQYVDK 297
           LQNMTYS+++ VE H+QVYT+K+VRSDKFKTG +++VDK
Sbjct: 160 LQNMTYSARIMVETHVQVYTKKLVRSDKFKTGVDRFVDK 198


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  143 bits (361), Expect = 1e-32
 Identities = 66/109 (60%), Positives = 88/109 (80%)
 Frame = +1

Query: 1   IGEITVQPGYDPSKKGDGDWRYASLKFGKVKLDPPTFFTGEKFSTDNAIDFVDFYPRHAR 180
           +GEI V+PGYDPSKKG+GDW++AS+KFGKV LD P F+ GEKFS  N  ++++ +PRHAR
Sbjct: 108 VGEIHVEPGYDPSKKGEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRHAR 167

Query: 181 LQNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKEQYVDKAVCKEIREEI 327
           LQNMTYS+++ VE H  V+T+K+VRSDKFKTG EQ+VDK    E + ++
Sbjct: 168 LQNMTYSARIIVETH--VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDV 214


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  136 bits (342), Expect = 2e-30
 Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
 Frame = +1

Query: 4   GEITVQPGYDPSKKGDGDWRYASLKFGKVKLDPPTFFTGEKFSTDNAIDFVDFYPRHARL 183
           GEI V+PGYDPSK+G+GDWRYAS++FGKV L+ P  + GE    ++    ++F PRHARL
Sbjct: 123 GEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGESDGKES----LNFLPRHARL 178

Query: 184 QNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKE-QYVDKAVCKEIREEI 327
           QNMTYSS+MK +VH QVYTQK+VRSDK+KTGK+ +YV+K V  E   +I
Sbjct: 179 QNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDI 227


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  136 bits (342), Expect = 2e-30
 Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
 Frame = +1

Query: 4   GEITVQPGYDPSKKGDGDWRYASLKFGKVKLDPPTFFTGEKFSTDNAIDFVDFYPRHARL 183
           GEI V+PGYDPSK+G+GDWRYAS++FGKV L+ P  + GE    ++    ++F PRHARL
Sbjct: 87  GEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGESDGKES----LNFLPRHARL 142

Query: 184 QNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKE-QYVDKAVCKEIREEI 327
           QNMTYSS+MK +VH QVYTQK+VRSDK+KTGK+ +YV+K V  E   +I
Sbjct: 143 QNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDI 191


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
           gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
           subunit, putative [Ricinus communis]
          Length = 1203

 Score =  136 bits (342), Expect = 2e-30
 Identities = 66/100 (66%), Positives = 79/100 (79%)
 Frame = +1

Query: 4   GEITVQPGYDPSKKGDGDWRYASLKFGKVKLDPPTFFTGEKFSTDNAIDFVDFYPRHARL 183
           GE+ V+PGYDPSKKG+ +WRYAS+KFGKV L+ PTF++G         D     PRHARL
Sbjct: 100 GELVVEPGYDPSKKGENEWRYASVKFGKVALEKPTFWSGA--------DEHKMLPRHARL 151

Query: 184 QNMTYSSKMKVEVHLQVYTQKMVRSDKFKTGKEQYVDKAV 303
           QNMTYSSKMKV V ++VYT+K+VRSDKFKTGK+QYVDK V
Sbjct: 152 QNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKDQYVDKEV 191