BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00004019
         (3880 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55141.1|PHYA_PETCR RecName: Full=Phytochrome A gi|556667|emb...  2076   0.0  
sp|P33530.1|PHYA1_TOBAC RecName: Full=Phytochrome A1 gi|297478|e...  1729   0.0  
ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera] g...  1724   0.0  
gb|ACC60969.1| phytochrome A [Vitis riparia]                         1719   0.0  
ref|NP_001234490.1| alternative transcript type 3 [Solanum lycop...  1714   0.0  

>sp|P55141.1|PHYA_PETCR RecName: Full=Phytochrome A gi|556667|emb|CAA53165.1| phytochrome A
            [Petroselinum crispum]
          Length = 1129

 Score = 2076 bits (5380), Expect = 0.0
 Identities = 1045/1116 (93%), Positives = 1069/1116 (95%)
 Frame = -2

Query: 3591 GRANQNARVVLTTLDAKIHADFEESGNSFDYSSSVRLTSEVGENLLIQSNKLTNAYLHHI 3412
            GRANQNARVVLTTLDAKIHADFEESGNSFDYSSSVR+TS VGEN  IQSNKLT AYLHHI
Sbjct: 14   GRANQNARVVLTTLDAKIHADFEESGNSFDYSSSVRVTSAVGENSSIQSNKLTTAYLHHI 73

Query: 3411 QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFT 3232
            QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFT
Sbjct: 74   QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFT 133

Query: 3231 APSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMTA 3052
            APSAAALQKAVGF DINLLNPILVHCKTSGKP+YAIAHRVTGSLIIDFEPVKPYEVPMTA
Sbjct: 134  APSAAALQKAVGFTDINLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEVPMTA 193

Query: 3051 AGALQSYKLASKAVNRLQALPGGSMERLCDTIVHEVFELTGYDRVMAYKFHDDDHGEVTA 2872
            AGALQSYKLASKAVNRLQALPGGSMERLCDT+V EVFELTGYDRVMAYKFHDDDHGEVTA
Sbjct: 194  AGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVTA 253

Query: 2871 EVTKPGLEPYLGLHYPATDVPQAARFLFLKNKVRMICDCRAKHVAVLQDEKLSFELTLCG 2692
            EVTKPGLEPY GLHYPATDVPQAARFLFLKNKVRMICDCRA    VLQDEKL FELTLCG
Sbjct: 254  EVTKPGLEPYFGLHYPATDVPQAARFLFLKNKVRMICDCRANSAPVLQDEKLPFELTLCG 313

Query: 2691 STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTSP 2512
            STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTSP
Sbjct: 314  STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTSP 373

Query: 2511 RFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQS 2332
            RFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQS
Sbjct: 374  RFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQS 433

Query: 2331 PNMMDLVKCDGAALLFKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGFP 2152
            PNMMDLVKCDGAALL+KNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAG+P
Sbjct: 434  PNMMDLVKCDGAALLYKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGYP 493

Query: 2151 GALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSFKA 1972
            GALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAK EPDE  DGRKMHPRSSFKA
Sbjct: 494  GALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKAEPDENHDGRKMHPRSSFKA 553

Query: 1971 FLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKAVVPEGDEIRSNTDVIHTKLNDLKI 1792
            FLEVVKTRS+TWK+FEMDAIHSLQLILRKALS EKAV  +GDEIRSNTDVIHTKLNDLKI
Sbjct: 554  FLEVVKTRSTTWKEFEMDAIHSLQLILRKALSVEKAVAAQGDEIRSNTDVIHTKLNDLKI 613

Query: 1791 EGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLTLV 1612
            EGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLTLV
Sbjct: 614  EGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLTLV 673

Query: 1611 EDSSVDTVEKMLAFALQGKEEQGIQFEFKTHGSREDLAPITLVVNACASRGLHDNVVGVC 1432
            EDSSV TV  +LA ALQGKEEQGI FEFKT+GSRED  PIT+VVNACA+RGLHDNVVGVC
Sbjct: 674  EDSSVGTVVFLLALALQGKEEQGIPFEFKTYGSREDSVPITVVVNACATRGLHDNVVGVC 733

Query: 1431 FIAQDVTTQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWR 1252
            F+AQDVT+QKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWR
Sbjct: 734  FVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWR 793

Query: 1251 REDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQASEKICFSFFARDGKYV 1072
            REDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQ SEKICFSFFA DGKYV
Sbjct: 794  REDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQISEKICFSFFATDGKYV 853

Query: 1071 ECLLCASKKLDGQGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQAKN 892
            ECLLCASKKL G+GTVTGIFCF           LHIQRLTEQTA+KRLKTL+YLRRQAKN
Sbjct: 854  ECLLCASKKLHGEGTVTGIFCFLQLASQELQQALHIQRLTEQTAMKRLKTLSYLRRQAKN 913

Query: 891  PLCGINFIREKLEVIGLGEEQTKLLRTSVHCQRQLNKILDDTDLDSFIDGYLDLEMSEFR 712
            PLCGINF+REKLE IG+GEEQTKL RTSVHCQR +NKILDDTDLDS IDGYLDLEMSEFR
Sbjct: 914  PLCGINFVREKLEEIGMGEEQTKLFRTSVHCQRHVNKILDDTDLDSIIDGYLDLEMSEFR 973

Query: 711  LHDVYVASRSQVLMRSNEKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLTPV 532
            LHDVYVASRSQV MRSN KAIQVVDNFSEEMMSETLYGDSLRLQ+VLADFMSVCVNLTPV
Sbjct: 974  LHDVYVASRSQVSMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQKVLADFMSVCVNLTPV 1033

Query: 531  GGHLGISVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLLIS 352
            GGHLGISVTLT+DNLGQSVQLVHLEFRITH GAGVPE+ +SQMFGSDSETSEEGISLLIS
Sbjct: 1034 GGHLGISVTLTEDNLGQSVQLVHLEFRITHTGAGVPEEAVSQMFGSDSETSEEGISLLIS 1093

Query: 351  RKLVKLMNGDVHYLREAGKSTFIITVELAAASKRES 244
            RKLVKLMNGDVHYLREAGKSTFIITVELAAASKRES
Sbjct: 1094 RKLVKLMNGDVHYLREAGKSTFIITVELAAASKRES 1129


>sp|P33530.1|PHYA1_TOBAC RecName: Full=Phytochrome A1 gi|297478|emb|CAA47284.1| type-A
            phytochrome [Nicotiana tabacum]
          Length = 1124

 Score = 1729 bits (4478), Expect = 0.0
 Identities = 851/1114 (76%), Positives = 973/1114 (87%), Gaps = 2/1114 (0%)
 Frame = -2

Query: 3588 RANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRLTSEVGENLLIQSNKLTNAYLHHI 3412
            R+  +AR++  TT+DAK+HADFEESG+SFDYSSSVR+TS  G+    +S+++T AYL+ I
Sbjct: 15   RSKHSARIIAQTTIDAKLHADFEESGDSFDYSSSVRVTSVAGDERKPKSDRVTTAYLNQI 74

Query: 3411 QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFT 3232
            QKGK IQP GCLLA+DEK+FK++A+SENAPEMLTMVSHAVPSVGE P LGIGTD+RTIFT
Sbjct: 75   QKGKFIQPFGCLLALDEKTFKVIAFSENAPEMLTMVSHAVPSVGELPALGIGTDIRTIFT 134

Query: 3231 APSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMTA 3052
             PSAAALQKA+GF +++LLNP+LVHCKTSGKPYYAI HRVTGSLIIDFEPVKPYEVPMTA
Sbjct: 135  GPSAAALQKALGFGEVSLLNPVLVHCKTSGKPYYAIVHRVTGSLIIDFEPVKPYEVPMTA 194

Query: 3051 AGALQSYKLASKAVNRLQALPGGSMERLCDTIVHEVFELTGYDRVMAYKFHDDDHGEVTA 2872
            AGALQSYKLA+KA+ RLQALP GSMERLCDT+V EVFELTGYDRVM YKFHDDDHGEV A
Sbjct: 195  AGALQSYKLAAKAITRLQALPSGSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVVA 254

Query: 2871 EVTKPGLEPYLGLHYPATDVPQAARFLFLKNKVRMICDCRAKHVAVLQDEKLSFELTLCG 2692
            E+TKPGL+PYLGLHYPATD+PQAARFLF+KNKVRMICDCRAKHV V+QDEKL F+LTLCG
Sbjct: 255  EITKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCG 314

Query: 2691 STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRN-SVKSKKLWGLVVCHNTS 2515
            STLRAPH CHLQYMENM+SIASLVMAVV+ND DE  ESSD   S K K+LWGLVVCHNT+
Sbjct: 315  STLRAPHYCHLQYMENMSSIASLVMAVVVNDGDEEGESSDSTQSQKRKRLWGLVVCHNTT 374

Query: 2514 PRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQ 2335
            PRFVPFPLRYACEFLAQVFAIHV+KELELE+QI+EKNILRTQTLLCD+LMR APLGIVSQ
Sbjct: 375  PRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRVAPLGIVSQ 434

Query: 2334 SPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGF 2155
            SPN+MDLVKCDGAALL+KNK++RLG TPSD+QL DIVSWL+EYHTDSTGLSTDSLYDAGF
Sbjct: 435  SPNIMDLVKCDGAALLYKNKIHRLGMTPSDFQLHDIVSWLSEYHTDSTGLSTDSLYDAGF 494

Query: 2154 PGALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSFK 1975
            PGALALGDVVCGMA V+I+    LFW+RSH A  +RWGGAKHEP EKDDGRKMHPRSSFK
Sbjct: 495  PGALALGDVVCGMAAVRISDKGWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFK 554

Query: 1974 AFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKAVVPEGDEIRSNTDVIHTKLNDLK 1795
            AFLEVVKTRS  WKD+EMDAIHSLQLILR A  D        D + SNT++IHTKLNDLK
Sbjct: 555  AFLEVVKTRSVPWKDYEMDAIHSLQLILRNASKD-------ADAMDSNTNIIHTKLNDLK 607

Query: 1794 IEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLTL 1615
            I+G+QELEAVT+EMVRLIETA+VPIFAVD D  +NGWNTKIAELTGLPVD+A+G HLLTL
Sbjct: 608  IDGLQELEAVTAEMVRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLLTL 667

Query: 1614 VEDSSVDTVEKMLAFALQGKEEQGIQFEFKTHGSREDLAPITLVVNACASRGLHDNVVGV 1435
            VEDSSVDTV KML  ALQGKEE+ ++FE KTHG   D +PI+L+VNACASR + D+VVGV
Sbjct: 668  VEDSSVDTVSKMLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDSVVGV 727

Query: 1434 CFIAQDVTTQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGW 1255
            CFIAQD+T QK IMDKFTRI+GDY+AI+QNP+PLIPPIFGTD+FGWCSEWN AMT+L+GW
Sbjct: 728  CFIAQDITGQKNIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGW 787

Query: 1254 RREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQASEKICFSFFARDGKY 1075
            RR+DV++KMLLGE+FG Q +CC LK++EAFVN GVVLNNA+TGQ   KI F FFAR+GKY
Sbjct: 788  RRDDVIDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFARNGKY 847

Query: 1074 VECLLCASKKLDGQGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQAK 895
            VECLLC SK+LD +G VTG+FCF           LHIQRL+EQTA+KRLK LAY+RRQ +
Sbjct: 848  VECLLCVSKRLDREGAVTGLFCFLQLASHELQQALHIQRLSEQTALKRLKVLAYIRRQIR 907

Query: 894  NPLCGINFIREKLEVIGLGEEQTKLLRTSVHCQRQLNKILDDTDLDSFIDGYLDLEMSEF 715
            NPL GI F R+ LE   LGEEQ  +LRTS  CQRQLNKILDDTDLDS IDGYLDLEM EF
Sbjct: 908  NPLSGIIFSRKMLEGTNLGEEQKNILRTSSQCQRQLNKILDDTDLDSIIDGYLDLEMLEF 967

Query: 714  RLHDVYVASRSQVLMRSNEKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLTP 535
            +LH+V VAS SQ++M+SN K I +V++  E++++ETLYGDS RLQQVLA+F+ VCVN TP
Sbjct: 968  KLHEVLVASISQIMMKSNGKNIMIVNDMVEDLLNETLYGDSPRLQQVLANFLLVCVNSTP 1027

Query: 534  VGGHLGISVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLLI 355
             GG L IS TLTKD +G+SVQL  LE RI+H G GVPE+LLSQMFG+++E SEEGISLLI
Sbjct: 1028 SGGQLSISGTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGISLLI 1087

Query: 354  SRKLVKLMNGDVHYLREAGKSTFIITVELAAASK 253
            SRKLVKLMNG+V YLREAG+STFII+VELA A+K
Sbjct: 1088 SRKLVKLMNGEVQYLREAGRSTFIISVELAVATK 1121


>ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera]
            gi|147838424|emb|CAN76586.1| hypothetical protein
            VITISV_020287 [Vitis vinifera]
            gi|183239014|gb|ACC60965.1| phytochrome A [Vitis
            vinifera] gi|296089871|emb|CBI39690.3| unnamed protein
            product [Vitis vinifera]
          Length = 1124

 Score = 1724 bits (4465), Expect = 0.0
 Identities = 850/1116 (76%), Positives = 969/1116 (86%), Gaps = 2/1116 (0%)
 Frame = -2

Query: 3591 GRANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRLTSEVGENLLIQSNKLTNAYLHH 3415
            GR+  +AR++  TT+DAK+HADFEESG+SFDYSSSVR T   G+    +S+K+T AYLHH
Sbjct: 14   GRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQP-RSDKVTTAYLHH 72

Query: 3414 IQKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF 3235
            IQKGKLIQP G LLA+DEK+FK++AYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF
Sbjct: 73   IQKGKLIQPFGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF 132

Query: 3234 TAPSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMT 3055
            + PSA+AL KA+GF +++LLNPILVHCKTSGKP+YAI HRVTGSLIIDFEPVKPYEVPMT
Sbjct: 133  SGPSASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMT 192

Query: 3054 AAGALQSYKLASKAVNRLQALPGGSMERLCDTIVHEVFELTGYDRVMAYKFHDDDHGEVT 2875
            AAGALQSYKLA+KA+ RLQ+LP GS+ERLCDT+V EVFELTGYDRVMAYKFHDDDHGEV 
Sbjct: 193  AAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVV 252

Query: 2874 AEVTKPGLEPYLGLHYPATDVPQAARFLFLKNKVRMICDCRAKHVAVLQDEKLSFELTLC 2695
            +E+TKPGLEPYLGLHYPATD+PQAARFLF+KNKVRMICDCRAKH+ VLQDEKL F+LTLC
Sbjct: 253  SEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLC 312

Query: 2694 GSTLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSV-KSKKLWGLVVCHNT 2518
            GSTLRAPHSCH+QYMENMNSIASLVMAVV+ND DE  ESS+     K K+LWGLVVCH+T
Sbjct: 313  GSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHT 372

Query: 2517 SPRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVS 2338
            +PRFVPFPLRYACEFLAQVFAIHV+KELELE+QI+EKNILRTQTLLCD+LMRDAPLGIVS
Sbjct: 373  TPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVS 432

Query: 2337 QSPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAG 2158
            QSPN+MDLVKCDGAALL+KNKV+RLG TPSD+QL DI SWL+EYH DSTGLSTDSLYDAG
Sbjct: 433  QSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAG 492

Query: 2157 FPGALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSF 1978
            +PGALALGD VCGMA VKITS D LFWFRSH A  +RWGGAKHEP EKDDGRKMHPRSSF
Sbjct: 493  YPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSF 552

Query: 1977 KAFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKAVVPEGDEIRSNTDVIHTKLNDL 1798
            KAFLEVVKTRS  WKD+EMDAIHSLQLILR A  D +A+         NT+ IHTKLNDL
Sbjct: 553  KAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAM-------DVNTNAIHTKLNDL 605

Query: 1797 KIEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLT 1618
            KIEG+QELEAVTSEMVRLIETA+VPI AVD D +VNGWNTKI+ELT LPVD+A+G HLLT
Sbjct: 606  KIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLT 665

Query: 1617 LVEDSSVDTVEKMLAFALQGKEEQGIQFEFKTHGSREDLAPITLVVNACASRGLHDNVVG 1438
            LVEDSS DTV+KML  ALQG+EEQ +QFE KTHGS+ D  PI+LVVNACASR LH+NVVG
Sbjct: 666  LVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHENVVG 725

Query: 1437 VCFIAQDVTTQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSG 1258
            VCF+AQD+T+QKT+MDKFTRI+GDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AM +LSG
Sbjct: 726  VCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSG 785

Query: 1257 WRREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQASEKICFSFFARDGK 1078
            W RE+VM+KMLLGE+FG   +CC LK++EAFV LG+VLN+ +TG+ SEK+ F FF++ GK
Sbjct: 786  WNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGK 845

Query: 1077 YVECLLCASKKLDGQGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQA 898
            YVECLL  SKKLD +G VTG+FCF           LHIQRL+EQTA+KRLK LAY++RQ 
Sbjct: 846  YVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQI 905

Query: 897  KNPLCGINFIREKLEVIGLGEEQTKLLRTSVHCQRQLNKILDDTDLDSFIDGYLDLEMSE 718
            KNPL GI F R+ +E   LGEEQ ++L TS  CQRQL+KILDD DLDS I+GYLDLEM E
Sbjct: 906  KNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVE 965

Query: 717  FRLHDVYVASRSQVLMRSNEKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLT 538
            F L +V VAS SQV+++SN K IQ+V++  E +M+ETLYGD LRLQQVLADF+ + VN T
Sbjct: 966  FTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFT 1025

Query: 537  PVGGHLGISVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLL 358
            P GG L ++ +L KD LG+SV LVHLE RITHAG GVPE LL+QMFG++ + SEEGISLL
Sbjct: 1026 PGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLL 1085

Query: 357  ISRKLVKLMNGDVHYLREAGKSTFIITVELAAASKR 250
            ISRKLVKLMNGDV YLREAGKSTFII++ELAAA K+
Sbjct: 1086 ISRKLVKLMNGDVQYLREAGKSTFIISIELAAARKK 1121


>gb|ACC60969.1| phytochrome A [Vitis riparia]
          Length = 1124

 Score = 1719 bits (4453), Expect = 0.0
 Identities = 848/1116 (75%), Positives = 968/1116 (86%), Gaps = 2/1116 (0%)
 Frame = -2

Query: 3591 GRANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRLTSEVGENLLIQSNKLTNAYLHH 3415
            GR+  +AR++  TT+DAK+HADFEESG+SFDYSSSVR T   G+    +S+K+T AYLHH
Sbjct: 14   GRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQP-RSDKVTTAYLHH 72

Query: 3414 IQKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF 3235
            IQKGKLIQP G LLA+D+K+FK++AYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF
Sbjct: 73   IQKGKLIQPFGSLLALDDKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF 132

Query: 3234 TAPSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMT 3055
            + PSA+AL KA+GF +++LLNPILVHCKTSGKP+YAI HRVTGSLIIDFEPVKPYEVPMT
Sbjct: 133  SGPSASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMT 192

Query: 3054 AAGALQSYKLASKAVNRLQALPGGSMERLCDTIVHEVFELTGYDRVMAYKFHDDDHGEVT 2875
            AAGALQSYKLA+KA+ RLQ+LP GS+ERLCDT+V EVFELTGYDRVMAYKFHDDDHGEV 
Sbjct: 193  AAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVV 252

Query: 2874 AEVTKPGLEPYLGLHYPATDVPQAARFLFLKNKVRMICDCRAKHVAVLQDEKLSFELTLC 2695
            +E+TKPGLEPYLGLHYPATD+PQAARFLF+KNKVRMICDCRAKH+ VLQDEKL F+LTLC
Sbjct: 253  SEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLC 312

Query: 2694 GSTLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSV-KSKKLWGLVVCHNT 2518
            GSTLRAPHSCH+QYMENMNSIASLVMAVV+ND DE  ESS+     K K+LWGLVVCH+T
Sbjct: 313  GSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHT 372

Query: 2517 SPRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVS 2338
            +PRFVPFPLRYACEFLAQVFAIHV+KELELE+QI+EKNILRTQTLLCD+LMRDAPLGIVS
Sbjct: 373  TPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVS 432

Query: 2337 QSPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAG 2158
            QSPN+MDLVKCDGAALL+KNKV+RLG TPSD+QL DI SWL+EYH DSTGLSTDSLYDAG
Sbjct: 433  QSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAG 492

Query: 2157 FPGALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSF 1978
            +PGALALGD VCGMA VKITS D LFWFRSH A  +RWGGAKHEP EKDDGRKMHPRSSF
Sbjct: 493  YPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSF 552

Query: 1977 KAFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKAVVPEGDEIRSNTDVIHTKLNDL 1798
            KAFLEVVKTRS  WKD+EMDAIHSLQLILR A  D +A+         NT+ IHTKLNDL
Sbjct: 553  KAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAM-------DVNTNAIHTKLNDL 605

Query: 1797 KIEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLT 1618
            KIEG+QELEAVTSEMVRLIETA+VPI AVD D +VNGWNTKI+ELT LPVD+A+G HLLT
Sbjct: 606  KIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLT 665

Query: 1617 LVEDSSVDTVEKMLAFALQGKEEQGIQFEFKTHGSREDLAPITLVVNACASRGLHDNVVG 1438
            LVEDSS DTV+KML  ALQG+EEQ +QFE KTHGS+ D  PI+LVVNACASR L +NVVG
Sbjct: 666  LVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLDENVVG 725

Query: 1437 VCFIAQDVTTQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSG 1258
            VCF+AQD+T+QKT+MDKFTRI+GDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AM +LSG
Sbjct: 726  VCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSG 785

Query: 1257 WRREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQASEKICFSFFARDGK 1078
            W RE+VM+KMLLGE+FG   +CC LK++EAFV LG+VLN+ +TG+ SEK+ F FF++ GK
Sbjct: 786  WNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGK 845

Query: 1077 YVECLLCASKKLDGQGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQA 898
            YVECLL  SKKLD +G VTG+FCF           LHIQRL+EQTA+KRLK LAY++RQ 
Sbjct: 846  YVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQI 905

Query: 897  KNPLCGINFIREKLEVIGLGEEQTKLLRTSVHCQRQLNKILDDTDLDSFIDGYLDLEMSE 718
            KNPL GI F R+ +E   LGEEQ ++L TS  CQRQL+KILDD DLDS I+GYLDLEM E
Sbjct: 906  KNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVE 965

Query: 717  FRLHDVYVASRSQVLMRSNEKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLT 538
            F L +V VAS SQV+++SN K IQ+V++  E +M+ETLYGD LRLQQVLADF+ + VN T
Sbjct: 966  FTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFT 1025

Query: 537  PVGGHLGISVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLL 358
            P GG L ++ +L KD LG+SV LVHLE RITHAG GVPE LL+QMFG++ + SEEGISLL
Sbjct: 1026 PGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLL 1085

Query: 357  ISRKLVKLMNGDVHYLREAGKSTFIITVELAAASKR 250
            ISRKLVKLMNGDV YLREAGKSTFII++ELAAA K+
Sbjct: 1086 ISRKLVKLMNGDVQYLREAGKSTFIISIELAAARKK 1121


>ref|NP_001234490.1| alternative transcript type 3 [Solanum lycopersicum]
            gi|3492795|emb|CAA05086.1| phyA [Solanum lycopersicum]
            gi|3492797|emb|CAA05087.1| phyA [Solanum lycopersicum]
            gi|3492799|emb|CAA05088.1| phyA [Solanum lycopersicum]
            gi|3492801|emb|CAA05089.1| phyA [Solanum lycopersicum]
          Length = 1123

 Score = 1714 bits (4439), Expect = 0.0
 Identities = 842/1113 (75%), Positives = 964/1113 (86%), Gaps = 2/1113 (0%)
 Frame = -2

Query: 3588 RANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRLTSEVGENLLIQSNKLTNAYLHHI 3412
            R+  +AR+V  T++DAK+HADFEESG+SFDYSSSVR+TS  G+    +S+K+T AYLH I
Sbjct: 15   RSKHSARIVAQTSIDAKLHADFEESGDSFDYSSSVRVTSVAGDEEKPKSDKVTTAYLHQI 74

Query: 3411 QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFT 3232
            QKGK IQP GCLLA+DEK+ K++A+SENAPEMLTMVSHAVPSVGEHPVLGIGTD+RTIFT
Sbjct: 75   QKGKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGTDIRTIFT 134

Query: 3231 APSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMTA 3052
             PS AALQKA+GF +++LLNP+LVHCK SGKP+YAI HRVTGSLI+DFEPVKPYEVPMTA
Sbjct: 135  GPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLILDFEPVKPYEVPMTA 194

Query: 3051 AGALQSYKLASKAVNRLQALPGGSMERLCDTIVHEVFELTGYDRVMAYKFHDDDHGEVTA 2872
            AGALQSYKLA+KA+ RLQ+LP GSMERLCDT+V EVFELTGYDRVM YKFH+DDHGEV +
Sbjct: 195  AGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHEDDHGEVVS 254

Query: 2871 EVTKPGLEPYLGLHYPATDVPQAARFLFLKNKVRMICDCRAKHVAVLQDEKLSFELTLCG 2692
            E+TKPGLEPYLGLHYPATD+PQAARFLF+KNKVRMICDCRAKHV V+QDEKL F+LTLCG
Sbjct: 255  EITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCG 314

Query: 2691 STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRN-SVKSKKLWGLVVCHNTS 2515
            STLRAPH CHLQYMENMNSIASLVMAVV+ND DE  ESSD + S K K+LWGLVVCHNT+
Sbjct: 315  STLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVCHNTT 374

Query: 2514 PRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQ 2335
            PRFVPFPLRYACEFLAQVFAIHV+KELELENQ +EKNILRTQTLLCD+LMRDAPLGIVSQ
Sbjct: 375  PRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQ 434

Query: 2334 SPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGF 2155
            SPN+MDLVKCDGAALL+KNK++RLG  PSD+QL+DIVSWL EYHTDSTGLSTDSLYDAGF
Sbjct: 435  SPNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLQDIVSWLCEYHTDSTGLSTDSLYDAGF 494

Query: 2154 PGALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSFK 1975
            PGALALGD VCGMA V+I+  D LFWFRSH A  +RWGGAKHEP EKDDGRKMHPRSSFK
Sbjct: 495  PGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFK 554

Query: 1974 AFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKAVVPEGDEIRSNTDVIHTKLNDLK 1795
            AFLEVVKTRS  WKD+EMDAIHSLQLILR A  D + V        SNT+ I+ KLNDLK
Sbjct: 555  AFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDAEVV-------NSNTNSIYKKLNDLK 607

Query: 1794 IEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLTL 1615
            I+G+QELE+VT+EMVRLIETA VPI AVD D  VNGWNTKIAELTGLPVD+A+GKHLLTL
Sbjct: 608  IDGMQELESVTAEMVRLIETALVPILAVDVDGQVNGWNTKIAELTGLPVDEAIGKHLLTL 667

Query: 1614 VEDSSVDTVEKMLAFALQGKEEQGIQFEFKTHGSREDLAPITLVVNACASRGLHDNVVGV 1435
            VEDSSVDTV KML  ALQGKEE+ ++FE KTHG   D +PI+L+VNACAS+ + DNVVGV
Sbjct: 668  VEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDVRDNVVGV 727

Query: 1434 CFIAQDVTTQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGW 1255
            CF+A D+T QK+IMDKFTRI+GDY+AI+QNP+PLIPPIFGTD+FGWCSEWN AMT+L+GW
Sbjct: 728  CFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTAMTKLTGW 787

Query: 1254 RREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQASEKICFSFFARDGKY 1075
            RR+DVM+KMLLGE+FG Q +CC LK++EAFVN GVVLNNA+TGQ SEKI F FFAR GKY
Sbjct: 788  RRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAITGQESEKIPFGFFARYGKY 847

Query: 1074 VECLLCASKKLDGQGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQAK 895
            VECLLC SK+LD +G VTG+FCF           L++QRL+EQTA+KRLK LAY+RRQ +
Sbjct: 848  VECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKVLAYIRRQIR 907

Query: 894  NPLCGINFIREKLEVIGLGEEQTKLLRTSVHCQRQLNKILDDTDLDSFIDGYLDLEMSEF 715
            NPL GI F R+ LE   LGEEQ  +L TS  CQRQLNKILDDTDLDS IDGYLDLEM EF
Sbjct: 908  NPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYLDLEMLEF 967

Query: 714  RLHDVYVASRSQVLMRSNEKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLTP 535
            +LH+V VAS SQV+M+SN K I + ++  E++++ETLYGDS RLQQVLA+F+ V VN TP
Sbjct: 968  KLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNATP 1027

Query: 534  VGGHLGISVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLLI 355
             GG L IS  LTKD +G+SVQL  LEFRI H G GVPE+LL QMFGS+++ SEEGISLL+
Sbjct: 1028 SGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADASEEGISLLV 1087

Query: 354  SRKLVKLMNGDVHYLREAGKSTFIITVELAAAS 256
            SRKLVKLMNG+V YLREAG+STFII+VELA A+
Sbjct: 1088 SRKLVKLMNGEVQYLREAGQSTFIISVELAVAT 1120