BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00002998
         (5002 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2034   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  1976   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   1972   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  1971   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1971   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2034 bits (5270), Expect = 0.0
 Identities = 1000/1070 (93%), Positives = 1045/1070 (97%)
 Frame = -1

Query: 3445 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 3266
            MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV
Sbjct: 466  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 525

Query: 3265 SPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAVLKPRPLW 3086
            SPQ+NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPA+LKPRPLW
Sbjct: 526  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLW 585

Query: 3085 TGKQVFNLIIPKQINLMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTG 2906
            TGKQVFNLIIPKQINL+R SAWH++ ETG ITPGDTQVRIEKGE++ GTLCKKTLG STG
Sbjct: 586  TGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTG 645

Query: 2905 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAK 2726
            SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETIS AK
Sbjct: 646  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAK 705

Query: 2725 NAVKELIRSAQDKDLEPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMV 2546
            N VKELIR+AQ++ LE EPGRTMMESFEN+VNQVLNKARDDAGSSA+KSLSESNNLKAMV
Sbjct: 706  NEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMV 765

Query: 2545 TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG 2366
            TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG
Sbjct: 766  TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG 825

Query: 2365 LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 2186
            LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL
Sbjct: 826  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 885

Query: 2185 YGEDGMDAVWIESQKLDSLKMKKNEFDKVFRYEIDDGHWNPSYMLTEHVEDLKTIREFRN 2006
            YGEDGMDAVWIE+QKLDSLKMKK EFD+VF+YEIDD +WNPSYML EHVEDLKTIREFRN
Sbjct: 886  YGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRN 945

Query: 2005 VFDAEVQKLEADRFQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEI 1826
            VFDAEVQKLEADRFQLGTEI TTGDN+WPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEI
Sbjct: 946  VFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEI 1005

Query: 1825 VEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVI 1646
            VEAVDKLQERLKVVPGDDL+SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAF+WVI
Sbjct: 1006 VEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVI 1065

Query: 1645 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1466
            GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN
Sbjct: 1066 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1125

Query: 1465 VAKKIKTPSLSVYLKPNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1286
            VAKKIKTPSLSVYLKP+VS +KE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED
Sbjct: 1126 VAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1185

Query: 1285 VDFVKSYYEMPDEEIDPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIF 1106
            VDFVKSYYEMPDEE+ P+KISPWLLR++LNREMM+DKKLSMADIAEKINLEFDDDLTCIF
Sbjct: 1186 VDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIF 1245

Query: 1105 NDDNADKLILRIRIMNDEAPKGDLQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 926
            NDDNA+KLILRIRIMNDEAPKG+LQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK
Sbjct: 1246 NDDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 1305

Query: 925  QQKTNRFDENNGFVTEPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVR 746
              K N+FDE+ GF  E EWMLDTEGVNLLAV+CHE+VDARRTTSNHLIEVIEVLGIEAVR
Sbjct: 1306 SGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVR 1365

Query: 745  RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 566
            RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET
Sbjct: 1366 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1425

Query: 565  VDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGL 386
            VDILLDAAVYAETD+LRGVTENIMLGQLAPIGTGDC+LYLN++MLQ AI++QLPSYMEGL
Sbjct: 1426 VDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGL 1485

Query: 385  DFGMTPARSPISGTPYHDGMMSPSYMLSPNLRMSPITDAQFSPYVGGMGF 236
            DFGMTP+RSPI+GTPYHDGMMSP+Y+LSPNLR+SPITDAQFSPYVGGM F
Sbjct: 1486 DFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535



 Score =  807 bits (2084), Expect = 0.0
 Identities = 393/423 (92%), Positives = 410/423 (96%)
 Frame = -3

Query: 4829 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4650
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 4649 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4470
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEED+K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 4469 FKQAQKIRNPKNRLKKILDSCKSKTKCEGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4290
            FKQAQKIRNPKNRLKKILD+CK+K+KCEGGDEI++Q+ D+DEPVKKSRGGCGAQQPK+TI
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 4289 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4110
            EGMKMIAEYKIQ+KKNDDPEQLPEPVERKQQLSAERVL+VLKRISDEDC+LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 4109 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3930
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 3929 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3750
            EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3749 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3570
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3569 EDG 3561
            EDG
Sbjct: 421  EDG 423


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 1976 bits (5118), Expect = 0.0
 Identities = 968/1070 (90%), Positives = 1030/1070 (96%)
 Frame = -1

Query: 3445 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 3266
            MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV
Sbjct: 466  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 525

Query: 3265 SPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAVLKPRPLW 3086
            SPQ+NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPA+LKPRPLW
Sbjct: 526  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLW 585

Query: 3085 TGKQVFNLIIPKQINLMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTG 2906
            TGKQVFNLIIPKQINL+R +AWH+D E G ITPGDT VRIEKGE+++GT+CKKTLG STG
Sbjct: 586  TGKQVFNLIIPKQINLIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTG 645

Query: 2905 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAK 2726
            SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETIS AK
Sbjct: 646  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAK 705

Query: 2725 NAVKELIRSAQDKDLEPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMV 2546
            NAVKELIR AQ+K+LEP+PGRTMMESFEN+VNQVLN+ARDDAGSSA+KSLSESNNLKAMV
Sbjct: 706  NAVKELIRKAQNKELEPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMV 765

Query: 2545 TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG 2366
            TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG
Sbjct: 766  TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG 825

Query: 2365 LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 2186
            LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL
Sbjct: 826  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 885

Query: 2185 YGEDGMDAVWIESQKLDSLKMKKNEFDKVFRYEIDDGHWNPSYMLTEHVEDLKTIREFRN 2006
            YGEDGMDAVWIESQKLDSLKMKK+EFD+VF+YE+DD +WNP+YM  +H++DLK IRE R+
Sbjct: 886  YGEDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRD 945

Query: 2005 VFDAEVQKLEADRFQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEI 1826
            VFDAEVQKLEADR+QLGTEI TTGD++WP+PVNL+RLIWNAQKTFKVD RRPSD+HPME 
Sbjct: 946  VFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEA 1005

Query: 1825 VEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVI 1646
            VEAVDKLQERLKVVPGDD +S+EAQKNATLFF ILLRST ASKRVL++YRLTREAFDWVI
Sbjct: 1006 VEAVDKLQERLKVVPGDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVI 1065

Query: 1645 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1466
            GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN
Sbjct: 1066 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1125

Query: 1465 VAKKIKTPSLSVYLKPNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1286
            VAKKIKTPSLS++L P  + +KE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED
Sbjct: 1126 VAKKIKTPSLSIFLIPECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1185

Query: 1285 VDFVKSYYEMPDEEIDPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIF 1106
            VDFVKSYYEMPDEEI P+KISPWLLR++LNREMM+DKKL+MADIAEKINLEFDDDLTCIF
Sbjct: 1186 VDFVKSYYEMPDEEISPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIF 1245

Query: 1105 NDDNADKLILRIRIMNDEAPKGDLQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 926
            NDDNA+KLILRIRIMNDEAPKG+L DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK
Sbjct: 1246 NDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 1305

Query: 925  QQKTNRFDENNGFVTEPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVR 746
            Q K ++FDEN GF T  EWMLDTEGVNLLAV+C+E VDARRTTSNHLIEVIEVLGIEAVR
Sbjct: 1306 QSKVSKFDENEGFKTIEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVR 1365

Query: 745  RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 566
            RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEET
Sbjct: 1366 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEET 1425

Query: 565  VDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGL 386
            VDILLDAAVYAE DYLRGVTENIMLGQLAPIGTGDC+LYLN+ ML+ AI++QLPSYM+GL
Sbjct: 1426 VDILLDAAVYAEADYLRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGL 1485

Query: 385  DFGMTPARSPISGTPYHDGMMSPSYMLSPNLRMSPITDAQFSPYVGGMGF 236
            DFGMTPARSP+S TPYHDGMMSPSY+LSP+LR+SP TDAQFSPYV GM F
Sbjct: 1486 DFGMTPARSPVSVTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535



 Score =  781 bits (2018), Expect = 0.0
 Identities = 383/423 (90%), Positives = 398/423 (94%)
 Frame = -3

Query: 4829 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4650
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IE  ETTERGKPKP GLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 4649 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4470
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEED+K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 4469 FKQAQKIRNPKNRLKKILDSCKSKTKCEGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4290
            FKQA KI+NPKNRLKKILD+CK+KTKCEGGD+ID  SQDTDEPVKKSRGGCGAQQP++TI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180

Query: 4289 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4110
            EGMKMIAEYK Q+KKNDD EQLPEPVERKQ L+AERVL VLKRISD+DC LLG NPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240

Query: 4109 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3930
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+KQE+ GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300

Query: 3929 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3750
            EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3749 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3570
            TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3569 EDG 3561
            +DG
Sbjct: 421  DDG 423


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 1972 bits (5108), Expect = 0.0
 Identities = 970/1071 (90%), Positives = 1026/1071 (95%), Gaps = 1/1071 (0%)
 Frame = -1

Query: 3445 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 3266
            MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV
Sbjct: 466  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 525

Query: 3265 SPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAVLKPRPLW 3086
            SPQANRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAPA+L+PRP+W
Sbjct: 526  SPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIW 585

Query: 3085 TGKQVFNLIIPKQINLMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTG 2906
            TGKQVFNLIIPK INL+R SAWHA+ E+G ITPGDT VRIEKGE+++GTLCKKTLG STG
Sbjct: 586  TGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTG 645

Query: 2905 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAK 2726
            SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETI TAK
Sbjct: 646  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAK 705

Query: 2725 NAVKELIRSAQDKDLEPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMV 2546
            N VKELI+ AQ+K+LEPEPGRTMMESFEN+VNQVLNKARDDAGSSA+KSLSESNNLKAMV
Sbjct: 706  NEVKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMV 765

Query: 2545 TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG 2366
            TAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRG
Sbjct: 766  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 825

Query: 2365 LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 2186
            LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL
Sbjct: 826  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 885

Query: 2185 YGEDGMDAVWIESQKLDSLKMKKNEFDKVFRYEIDDGHWNPSYMLTEHVEDLKTIREFRN 2006
            YGEDGMDAVWIESQKLDSLKMKK EFD VFRYE+DD +W P+YML +HV+DLKTIREFRN
Sbjct: 886  YGEDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRN 945

Query: 2005 VFDAEVQKLEADRFQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEI 1826
            VF+AEVQKLEADR QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFK+DLRRPSDMHPMEI
Sbjct: 946  VFEAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEI 1005

Query: 1825 VEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVI 1646
            VEA+DKLQERLKVVPGDD MS+EAQKNATLFFNILLRSTFASKRVLKEYRLT+E+F+WVI
Sbjct: 1006 VEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVI 1065

Query: 1645 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1466
            GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN
Sbjct: 1066 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1125

Query: 1465 VAKKIKTPSLSVYLKPNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1286
            VAKKIKTPSLSV+LKP VS  KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEED
Sbjct: 1126 VAKKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEED 1185

Query: 1285 VDFVKSYYEMPDEEIDPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIF 1106
            V+FV+SYYEMPDE+IDPDKISPWLLR++LNREMM+DKKLSMADIAEKIN EFDDDL+CIF
Sbjct: 1186 VEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIF 1245

Query: 1105 NDDNADKLILRIRIMNDEAPKGDLQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 926
            NDDNADKLILR+RI NDEAPKG++QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK
Sbjct: 1246 NDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIK 1305

Query: 925  QQKTNRFDENNGFVTEPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVR 746
              K N+FDE+ GF  + EWMLDTEGVNLLAV+CHE+VD+ RTTSNHLIEVIEVLGIEAVR
Sbjct: 1306 YGKVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVR 1365

Query: 745  RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 566
            RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEET
Sbjct: 1366 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEET 1425

Query: 565  VDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGL 386
            VDILLDAAVYAE+DYLRGVTENIMLGQLAPIGTG C LYLN++MLQQAI++QLPSY+EGL
Sbjct: 1426 VDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGL 1485

Query: 385  DFGMTPARSPISGTPYHD-GMMSPSYMLSPNLRMSPITDAQFSPYVGGMGF 236
            D+GMTPARSP+S TPY D GMMSP  MLSPN R SPITDAQFSPYVGGM F
Sbjct: 1486 DYGMTPARSPMSATPYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534



 Score =  747 bits (1929), Expect = 0.0
 Identities = 368/424 (86%), Positives = 392/424 (92%), Gaps = 1/424 (0%)
 Frame = -3

Query: 4829 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4650
            MD RFP+SPAEVAKV++VQFGILSPDEIRQMSVV IEH ET ERGK KP GLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60

Query: 4649 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4470
            DRK+KC+TCMA MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEE+ K
Sbjct: 61   DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEETK 120

Query: 4469 FKQAQKIRNPKNRLKKILDSCKSKTKCEGGDEIDSQSQ-DTDEPVKKSRGGCGAQQPKIT 4293
            FKQA KIRNPK+RL++I D+CKSK  C GGDE+D Q Q DTDEPVKK R GCGAQQP IT
Sbjct: 121  FKQALKIRNPKHRLRRIYDACKSKKICAGGDELDVQDQQDTDEPVKK-RSGCGAQQPNIT 179

Query: 4292 IEGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKYA 4113
            ++GMKM+AE+K  KKK+DD +QLPEPVERKQ LSAERVL+VLKRISDEDC+LLGLNPKYA
Sbjct: 180  VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 239

Query: 4112 RPDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHII 3933
            RPDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLRKQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHII 299

Query: 3932 SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3753
            +EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3752 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3573
            RTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3572 REDG 3561
            REDG
Sbjct: 420  REDG 423


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 1971 bits (5105), Expect = 0.0
 Identities = 966/1070 (90%), Positives = 1027/1070 (95%)
 Frame = -1

Query: 3445 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 3266
            MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV
Sbjct: 466  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 525

Query: 3265 SPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAVLKPRPLW 3086
            SPQ+NRPVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPA+LKP+PLW
Sbjct: 526  SPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLW 585

Query: 3085 TGKQVFNLIIPKQINLMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTG 2906
            TGKQVFNLIIPKQINL R SAWH++ ETGHITPGDT VRIEKGE+++GTLCKK LG STG
Sbjct: 586  TGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTG 645

Query: 2905 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAK 2726
            SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATMEKINETIS AK
Sbjct: 646  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAK 705

Query: 2725 NAVKELIRSAQDKDLEPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMV 2546
            N VK LI+ AQ++ LEPEPGRTMM+SFENKVNQVLNKARDDAGSSA+KSLSESNNLKAMV
Sbjct: 706  NEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMV 765

Query: 2545 TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG 2366
            TAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRG
Sbjct: 766  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRG 825

Query: 2365 LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 2186
            LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL
Sbjct: 826  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 885

Query: 2185 YGEDGMDAVWIESQKLDSLKMKKNEFDKVFRYEIDDGHWNPSYMLTEHVEDLKTIREFRN 2006
            YGEDGMDAVWIESQKLDSLKMKK EF+++FRYE +D +W P+YML EHVEDLKTIREFRN
Sbjct: 886  YGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRN 945

Query: 2005 VFDAEVQKLEADRFQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEI 1826
            VF+AEVQKLEADR+QLGTEI TTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEI
Sbjct: 946  VFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEI 1005

Query: 1825 VEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVI 1646
            VEA+DKLQERLKVVPG+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVI
Sbjct: 1006 VEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVI 1065

Query: 1645 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1466
            GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN
Sbjct: 1066 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1125

Query: 1465 VAKKIKTPSLSVYLKPNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1286
            VAK+IKTPSLSVYLKP  + +KE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED
Sbjct: 1126 VAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1185

Query: 1285 VDFVKSYYEMPDEEIDPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIF 1106
            +DFVKSYYEMPDEEI P+KISPWLLR++LNREMM+DKKLSMA+IAEKINLEFDDDLTCIF
Sbjct: 1186 IDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIF 1245

Query: 1105 NDDNADKLILRIRIMNDEAPKGDLQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 926
            NDDNA+KLILRIRIMNDEAPKG+L DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK
Sbjct: 1246 NDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 1305

Query: 925  QQKTNRFDENNGFVTEPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVR 746
              K N+FDEN GF  E EWMLDTEGVNLLAV+ HE+VDARRTTSNHLIEVIEVLGIEAVR
Sbjct: 1306 CGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVR 1365

Query: 745  RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 566
            RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET
Sbjct: 1366 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1425

Query: 565  VDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGL 386
            VDILLDAAVYAETD+LRGVTENIMLGQLAPIGTG C+LYLN++ML+ AI++QLPSY++GL
Sbjct: 1426 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1485

Query: 385  DFGMTPARSPISGTPYHDGMMSPSYMLSPNLRMSPITDAQFSPYVGGMGF 236
            DFGMTP+RSPISGTPYH+GMMSP+Y+LSPNLR+SPI+DAQFSPYVGGM F
Sbjct: 1486 DFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535



 Score =  777 bits (2007), Expect = 0.0
 Identities = 377/423 (89%), Positives = 400/423 (94%)
 Frame = -3

Query: 4829 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4650
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK +GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4649 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4470
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKIL DEED K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4469 FKQAQKIRNPKNRLKKILDSCKSKTKCEGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4290
            FKQA +I+NPKNRL+KILD+CK+KTKCEGGDEID Q QD+D+PVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 4289 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4110
            EGMKM AEYK Q+KKNDDPEQLPEPVERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 4109 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3930
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 3929 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3750
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3749 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3570
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3569 EDG 3561
            +DG
Sbjct: 421  DDG 423


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 1971 bits (5105), Expect = 0.0
 Identities = 966/1070 (90%), Positives = 1027/1070 (95%)
 Frame = -1

Query: 3445 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 3266
            MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV
Sbjct: 466  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 525

Query: 3265 SPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAVLKPRPLW 3086
            SPQ+NRPVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPA+LKP+PLW
Sbjct: 526  SPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLW 585

Query: 3085 TGKQVFNLIIPKQINLMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTG 2906
            TGKQVFNLIIPKQINL R SAWH++ ETGHITPGDT VRIEKGE+++GTLCKK LG STG
Sbjct: 586  TGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTG 645

Query: 2905 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAK 2726
            SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATMEKINETIS AK
Sbjct: 646  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAK 705

Query: 2725 NAVKELIRSAQDKDLEPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMV 2546
            N VK LI+ AQ++ LEPEPGRTMM+SFENKVNQVLNKARDDAGSSA+KSLSESNNLKAMV
Sbjct: 706  NEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMV 765

Query: 2545 TAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRG 2366
            TAGSKGSFINISQMTACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRG
Sbjct: 766  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRG 825

Query: 2365 LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 2186
            LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL
Sbjct: 826  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 885

Query: 2185 YGEDGMDAVWIESQKLDSLKMKKNEFDKVFRYEIDDGHWNPSYMLTEHVEDLKTIREFRN 2006
            YGEDGMDAVWIESQKLDSLKMKK EF+++FRYE +D +W P+YML EHVEDLKTIREFRN
Sbjct: 886  YGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRN 945

Query: 2005 VFDAEVQKLEADRFQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEI 1826
            VF+AEVQKLEADR+QLGTEI TTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEI
Sbjct: 946  VFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEI 1005

Query: 1825 VEAVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVI 1646
            VEA+DKLQERLKVVPG+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVI
Sbjct: 1006 VEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVI 1065

Query: 1645 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1466
            GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN
Sbjct: 1066 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1125

Query: 1465 VAKKIKTPSLSVYLKPNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1286
            VAK+IKTPSLSVYLKP  + +KE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED
Sbjct: 1126 VAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED 1185

Query: 1285 VDFVKSYYEMPDEEIDPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIF 1106
            +DFVKSYYEMPDEEI P+KISPWLLR++LNREMM+DKKLSMA+IAEKINLEFDDDLTCIF
Sbjct: 1186 IDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIF 1245

Query: 1105 NDDNADKLILRIRIMNDEAPKGDLQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 926
            NDDNA+KLILRIRIMNDEAPKG+L DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK
Sbjct: 1246 NDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK 1305

Query: 925  QQKTNRFDENNGFVTEPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVR 746
              K N+FDEN GF  E EWMLDTEGVNLLAV+ HE+VDARRTTSNHLIEVIEVLGIEAVR
Sbjct: 1306 CGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVR 1365

Query: 745  RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 566
            RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET
Sbjct: 1366 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1425

Query: 565  VDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGL 386
            VDILLDAAVYAETD+LRGVTENIMLGQLAPIGTG C+LYLN++ML+ AI++QLPSY++GL
Sbjct: 1426 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1485

Query: 385  DFGMTPARSPISGTPYHDGMMSPSYMLSPNLRMSPITDAQFSPYVGGMGF 236
            DFGMTP+RSPISGTPYH+GMMSP+Y+LSPNLR+SPI+DAQFSPYVGGM F
Sbjct: 1486 DFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535



 Score =  777 bits (2007), Expect = 0.0
 Identities = 377/423 (89%), Positives = 400/423 (94%)
 Frame = -3

Query: 4829 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4650
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK +GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4649 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4470
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKIL DEED K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4469 FKQAQKIRNPKNRLKKILDSCKSKTKCEGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4290
            FKQA +I+NPKNRL+KILD+CK+KTKCEGGDEID Q QD+D+PVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 4289 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKYAR 4110
            EGMKM AEYK Q+KKNDDPEQLPEPVERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 4109 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3930
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 3929 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3750
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3749 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3570
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3569 EDG 3561
            +DG
Sbjct: 421  DDG 423