BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica22_contig00002237
         (3963 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1678   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1675   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1669   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1656   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1655   0.0  

>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1678 bits (4346), Expect = 0.0
 Identities = 808/1203 (67%), Positives = 975/1203 (81%), Gaps = 5/1203 (0%)
 Frame = +2

Query: 155  MGSEESERGVVVTQISVGGFDDSMTAKTLLDYFEENVGIVWRCRLKTSSTPFEAYPEFAI 334
            M +E S +  VVTQ+SVGGFD  +TAK LL+Y +  +G+VWRCRLKTS TP E+YP F I
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 335  -DTTKLKRLNSYDNVIPHAFVHFAIPDAARSALDAAGRGELILEYNPLKISLGPENPRRM 511
             D TK++R   Y  V+PHAFVHFA+P +A  A++A+GR EL L    LK+SLGP+NP  +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 512  NQSRRNKEPFKFPNVGIEIGSWVSKDKFFVGWRGPPTGVDFLVDPFDGTCKFVFTMDTAF 691
            NQ RR   PFK  +VG EIG+ VS+D+FFVGWRGPP+GVDFLVDPFDGTCKF F+ +TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 692  SFLGMRNHAVIKCNFKVEFLVRDIQWMKSYSDTSHLIILLYLESSPKLYYRTADDDIEES 871
            S      HAVIKC+FKVEFLVRDI  +  Y++TS L++LL L S+P ++YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 872  VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILVQPRHGLKLRKAMQYLREQRVSI---R 1042
            VPFD+LDDDDPWIRTTDFTASGAIGRC+ YR+ + PRHG KLRKA++YL+E+RV +    
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 1043 DLQTQLTIQGEPDFGMPVADPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNL 1222
            + + ++ I  EPDFGMP++DP FCIH KEGI F+ LFLVNAV+HKGIF+Q+ LS+ FF+L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 1223 LKSQKEEVNIAALKHICSTKRPYFNACERLKNVQDWLLKNPKLLRT-RELDDIVEVRRLI 1399
            L++Q  EVN++ALKHIC+ +RP FNA  RLK VQ+WLLKNP L +  ++L D+VE+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1400 ITPTRAYCLPPEVELSNRVLRHYKSVADRFLRVTFMDDGMQILNKNVVTYYPAPIVRDIT 1579
            ITPT+AYCLPPEVELSNRVLR YK VADRFLRVTFMD+G+Q +N NV+ YY APIVRDIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 1580 SNVNAQKTAVFKRVKDITSDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVLDVLS 1759
            SN   QKT +FKRV+ I ++GF+LCGR+YSFLAFSANQLRD+SAWFF+ ++N SVLDV S
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1760 WMGRFFNKNVAKCAARMGLCFSSTYATVDVPHDNVDFELADIMRNNYDFSDGIGKISHDL 1939
            WMG+F N+N+AKCAARMG CFSSTYAT++VP + V+ +L DI RN Y FSDGIG I+ DL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 1940 AIEVAQRLQLNVSPPCAYQIRFGGCKGVVACWPASKSGIHLSLRPSMNKFVSNHTILEIC 2119
            A EVA++L+L++ PPCAYQIR+ GCKGVVACWP    G+ LSLRPSMNKF SNHT LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2120 SWTRFQPGFLNRQIITLLSALNVSDNVFWNMQESMISKLNQMLESVDIAFDVVTSSCAEE 2299
            SWTRFQPGFLNRQIITLLS LNV D VFW MQE+M+SKLNQM  + D+AFDV+T+SCA++
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 2300 GNTAAIMLSAGFKPRNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILE 2479
            GN AAIMLSAGFKP  EPHLRGMLT +RAAQ  DLREK RI+V SGRWLMGCLDEL +LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 2480 QGQCFVQVSNPSLENCFVKHGSEFSETKRDLQVIKGLVAVAKNPCLHPGDVRILEAVDVP 2659
            QGQCF+QVSN SLE CF+KHG++FSE +++LQVIKG V +AKNPCLHPGDVR+LEAVDVP
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 2660 SLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPGKASWTAMNYAPAEAK 2839
             LHHLYDCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDE LIPP K SW  M Y  AEAK
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 2840 ESLRDVKLKDVSDFFARNMVNESLGTICNAHVVHADSSDYGAMDENCXXXXXXXXXXXXF 3019
               R V  +D+ +FFA+NMVN++LG ICNAHVVHAD S+YGA D+NC            F
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 3020 PKTGKFVNMPSHLKPKLYPDFMGKEDFQSYKSTKVLGRLYRKIKDNYDIDLSDSMEINFL 3199
            PKTGK V+MP +LKPK+YPDFMGKE++QSYKS K+LGRLYR+IKD YD D++ S E+N +
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 3200 PREIPYDTDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKEEEVVSGHIWSMPKNS 3379
            P +IPYD+DLE  G++ +I+DAW  KCSYD QLN LL QYKV +EEEVV+GHIWSMPK S
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 3380 SKKQGELKERLKNAYNALKKEFRRVFEHMHAGFDDLSNDEKNAAYEHKASAWYQVTYRPE 3559
            S+KQGELK+RLK++YN+LKKEFR++FE M   F+ L + EKN  YE KASAWYQV Y P 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 3560 WVTMSLDLQDPDANGKETVMLSFPWIAADYLARIKIRRGEMKDASTQPNKPINSLARYLS 3739
            WV  SL+LQDPD  G  +VMLSF WIAADYLARIKIR  E  +  +   KP+NSLA+YL+
Sbjct: 1141 WVKKSLELQDPDGAG-TSVMLSFAWIAADYLARIKIRHRETGNVDSA--KPVNSLAKYLA 1197

Query: 3740 GKI 3748
             ++
Sbjct: 1198 DRM 1200


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1675 bits (4337), Expect = 0.0
 Identities = 827/1202 (68%), Positives = 972/1202 (80%), Gaps = 4/1202 (0%)
 Frame = +2

Query: 155  MGSEESERGVVVTQISVGGFDDSMTAKTLLDYFEENVGIVWRCRLKTSSTPFEAYPEFAI 334
            M SE SE+ +VVTQIS+GGFD  +TA  L  Y E+ +G V RCRLKTSSTP E+YP+F I
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 335  -DTTKLKRLNSYDNVIPHAFVHFAIPDAARSALDAAGRGELILEYNPLKISLGPENPRRM 511
             DT K++R   Y  V PHAFVHF  P+AA  ALDAAG+ EL L   PLK+SLGPE P  +
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 512  NQSRRNKEPFKFPNVGIEIGSWVSKDKFFVGWRGPPTGVDFLVDPFDGTCKFVFTMDTAF 691
            NQ RR   PFKFP+V +EIG  VS+D++F GWRGP +GVDFLVDPFDGTCKF+FT DTAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 692  SFLGMRNHAVIKCNFKVEFLVRDIQWMKSYSDTSHLIILLYLESSPKLYYRTADDDIEES 871
            SF GM  HAVIKCNFKVEFLVR+I  ++   D S LI+LL L SSP +YYRTADDDIEE+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 872  VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILVQPRHGLKLRKAMQYLREQRVSIRD-- 1045
            VPFD+LDDDDPWIRTTDFT SGAIGRCN YRI + PR+G KL+KAM YLR +RV++ +  
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 1046 LQTQLTIQGEPDFGMPVADPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLL 1225
             + QL ++ EPDFG+P++DP FCI  KEGI+F+ +FLVNAV+HKGI +Q+ LSD+FF+LL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 1226 KSQKEEVNIAALKHICSTKRPYFNACERLKNVQDWLLKNPKLLRT-RELDDIVEVRRLII 1402
            +SQ++++NIAALKHICS + P F+A +RLK V  WLLKNPKLL++ +ELDDIVEVRRL+I
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 1403 TPTRAYCLPPEVELSNRVLRHYKSVADRFLRVTFMDDGMQILNKNVVTYYPAPIVRDITS 1582
            TP++AYCLPPEVELSNRVLR+YK V+DRFLRVTFMD+GMQ +N NV+ YY APIV+ ITS
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 1583 NVNAQKTAVFKRVKDITSDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVLDVLSW 1762
            N   QKT VFKRVK I +DGF+LCGRKYSFLAFS+NQLRDRSAWFFA D+ TSV  + SW
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 1763 MGRFFNKNVAKCAARMGLCFSSTYATVDVPHDNVDFELADIMRNNYDFSDGIGKISHDLA 1942
            MG+F N+NVAKCAARMG CFSSTYATV+VP   V  EL DI RN YDFSDGIGKI  DLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 1943 IEVAQRLQLNVSPPCAYQIRFGGCKGVVACWPASKSGIHLSLRPSMNKFVSNHTILEICS 2122
            +EVA++L+L    P AYQIR+ GCKGVVACWP+   GI LS RPSMNKF+S+HTILEICS
Sbjct: 600  MEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658

Query: 2123 WTRFQPGFLNRQIITLLSALNVSDNVFWNMQESMISKLNQMLESVDIAFDVVTSSCAEEG 2302
            WTRFQPGFLNRQI+TLLSALNV D +FW MQESMISKLNQML   D+AFDV+ +SCAE+G
Sbjct: 659  WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718

Query: 2303 NTAAIMLSAGFKPRNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQ 2482
            NTAAIMLSAGFKP+ EPHL+GMLT IRAAQF  LREKARI+V SGRWLMGCLDEL +LEQ
Sbjct: 719  NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 2483 GQCFVQVSNPSLENCFVKHGSEFSETKRDLQVIKGLVAVAKNPCLHPGDVRILEAVDVPS 2662
            GQCF+QVS+PSLENCF+KHGS FS  K +L+VIKG+VA+AKNPCLHPGDVRILEAVD P 
Sbjct: 779  GQCFIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 2663 LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPGKASWTAMNYAPAEAKE 2842
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPP K SW  M Y  AEAK 
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 2843 SLRDVKLKDVSDFFARNMVNESLGTICNAHVVHADSSDYGAMDENCXXXXXXXXXXXXFP 3022
              R+V   D+ DFF +NMVNE+LG ICNAHVVHAD S+YGA+DE C            FP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 3023 KTGKFVNMPSHLKPKLYPDFMGKEDFQSYKSTKVLGRLYRKIKDNYDIDLSDSMEINFLP 3202
            KTGK V +P +LKPK+YPDFMGKE+FQ+Y+S K+LG++YR+IKD Y+ D+S+S E  F  
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 3203 REIPYDTDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKEEEVVSGHIWSMPKNSS 3382
             ++P+D DL  PGSA FINDAW  KCSYD QLN LLGQYKV +EEEVV+GH+WSMPK  S
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077

Query: 3383 KKQGELKERLKNAYNALKKEFRRVFEHMHAGFDDLSNDEKNAAYEHKASAWYQVTYRPEW 3562
            +KQGEL ERLK+AY++LKKEFR++FE M++ FD L++DEKN  YE KASAWYQVTY P W
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTW 1137

Query: 3563 VTMSLDLQDPDANGKETVMLSFPWIAADYLARIKIRRGEMKDASTQPNKPINSLARYLSG 3742
            V  SL+LQ+PD    E VMLSF WI ADYLARIKIRR      +   +KPINSLAR+L  
Sbjct: 1138 VKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRR--KGTGNVDSSKPINSLARFLVD 1195

Query: 3743 KI 3748
            +I
Sbjct: 1196 RI 1197


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1669 bits (4321), Expect = 0.0
 Identities = 810/1201 (67%), Positives = 959/1201 (79%), Gaps = 3/1201 (0%)
 Frame = +2

Query: 155  MGSEESERGVVVTQISVGGFDDSMTAKTLLDYFEENVGIVWRCRLKTSSTPFEAYPEFAI 334
            M +E S +  VVTQ+S+GGFD  +TAK LL+Y E  +G+VWRCRLKTS TP E+YP F I
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 335  -DTTKLKRLNSYDNVIPHAFVHFAIPDAARSALDAAGRGELILEYNPLKISLGPENPRRM 511
             D TK+ R   Y  V PHAFVHFA+P +A  A+DAA R EL L    LK SLGPENP  +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 512  NQSRRNKEPFKFPNVGIEIGSWVSKDKFFVGWRGPPTGVDFLVDPFDGTCKFVFTMDTAF 691
            NQ RR   PFK   VG+EIG+ VS+D+FFVGWRGPPTGVDFLVDPFDGTC+F F+ +TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 692  SFLGMRNHAVIKCNFKVEFLVRDIQWMKSYSDTSHLIILLYLESSPKLYYRTADDDIEES 871
            SF     HAVIKC+FKVEFLVRDI  +K Y++TS L++LL L S+P+++YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 872  VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILVQPRHGLKLRKAMQYLREQRVSIRDLQ 1051
            VPFD+LDDDDPWIRTTDFTASGAIGRC+ YR+ + PRHG KLRKA+ +L+E+RV    L+
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 1052 TQLTIQGEPDFGMPVADPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLLKS 1231
              + I+ EPDFGMP+ DP FCIH KEGI F  LFLVNAV+HKGIF+Q+ LS+ FF+LL++
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 1232 QKEEVNIAALKHICSTKRPYFNACERLKNVQDWLLKNPKLLRT-RELDDIVEVRRLIITP 1408
            Q  EVN+AALKHI   +RP F+A ++LK  Q+WLLKNPK  +  ++LDDI E+RRL+ITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 1409 TRAYCLPPEVELSNRVLRHYKSVADRFLRVTFMDDGMQILNKNVVTYYPAPIVRDITSNV 1588
            T+AYCLPPEVELSNRVLR YK VADRFLRVTFMD+G+Q +N N + Y+ APIVR ITS  
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 1589 NAQKTAVFKRVKDITSDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVLDVLSWMG 1768
              QKT +FKRV+ I ++GF+LCGR+YSFLAFS+NQLRDRSAWFFA D+N +V+ + SWMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 1769 RFFNKNVAKCAARMGLCFSSTYATVDVPHDNVDFELADIMRNNYDFSDGIGKISHDLAIE 1948
            +F NKN+AKCAARMG CFSSTYAT++VP + V+ +L DI RN YDFSDGIG I+ DLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 1949 VAQRLQLNVSPPCAYQIRFGGCKGVVACWPASKSGIHLSLRPSMNKFVSNHTILEICSWT 2128
            VA++L+ +  PPCAYQIR+ GCKGVVACWP    GI LSLR SMNKF SNHTILEICSWT
Sbjct: 601  VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660

Query: 2129 RFQPGFLNRQIITLLSALNVSDNVFWNMQESMISKLNQMLESVDIAFDVVTSSCAEEGNT 2308
            RFQPGFLNRQIITLLSALNV D VFW MQE M+SKLNQML   D+AFDV+T+SCAE+GN 
Sbjct: 661  RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720

Query: 2309 AAIMLSAGFKPRNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQGQ 2488
            AAIMLSAGFKP+ EPHLRGMLT +RAAQ   LREKARI+V SGRWLMGCLDEL +LEQGQ
Sbjct: 721  AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780

Query: 2489 CFVQVSNPSLENCFVKHGSEFSETKRDLQVIKGLVAVAKNPCLHPGDVRILEAVDVPSLH 2668
            CF+QVSN  LENCFVKHGS+FSETK++LQV+KG V +AKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840

Query: 2669 HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPGKASWTAMNYAPAEAKESL 2848
            HLYDCLVFPQKG+RPH NEASGSDLDGDLYFVTWDE LIPP K SW  M Y  AEAK+  
Sbjct: 841  HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900

Query: 2849 RDVKLKDVSDFFARNMVNESLGTICNAHVVHADSSDYGAMDENCXXXXXXXXXXXXFPKT 3028
            R V  +D+ +FFA+NM NE+LG ICNAHVV AD S+YGA+DE C            FPKT
Sbjct: 901  RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960

Query: 3029 GKFVNMPSHLKPKLYPDFMGKEDFQSYKSTKVLGRLYRKIKDNY-DIDLSDSMEINFLPR 3205
            GK V+MPS LKPK+YPDFMGKE+ QSYKS K+LGRLYR+IKD Y D D++ S E+NF+  
Sbjct: 961  GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRG 1020

Query: 3206 EIPYDTDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKEEEVVSGHIWSMPKNSSK 3385
            +IPYD DLE  G+  FI+DAW  KCSYD QLN LL QYKV +EEEVV+GH+WSMPK SS+
Sbjct: 1021 DIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080

Query: 3386 KQGELKERLKNAYNALKKEFRRVFEHMHAGFDDLSNDEKNAAYEHKASAWYQVTYRPEWV 3565
            KQG+LKERLK++YN LK+EFR+VFE M   F  L +DEKN  YE KASAWYQVTY P W+
Sbjct: 1081 KQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWI 1140

Query: 3566 TMSLDLQDPDANGKETVMLSFPWIAADYLARIKIRRGEMKDASTQPNKPINSLARYLSGK 3745
              SL+LQD D  G  +VMLSF WIAADYLARIKIR   + +  +   KP+NSLA+YL+ +
Sbjct: 1141 QKSLELQDSDGAG-ISVMLSFAWIAADYLARIKIRHSRIGNVDSA--KPVNSLAKYLADR 1197

Query: 3746 I 3748
            +
Sbjct: 1198 M 1198


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1656 bits (4288), Expect = 0.0
 Identities = 821/1202 (68%), Positives = 956/1202 (79%), Gaps = 4/1202 (0%)
 Frame = +2

Query: 155  MGSEESERGVVVTQISVGGFDDSMTAKTLLDYFEENVGIVWRCRLKTSSTPFEAYPEFAI 334
            MGSE SE+ +VVTQISVGGFD+ + AK L +Y EE VG VWRCRLK SSTP ++YP + I
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 335  DTTKLKRLNSYDNVIPHAFVHFAIPDAARSALDAAGRGELILEYNPLKISLGPENPRRMN 514
            D  +++R+N+Y+ V+PHAFVHFA  ++A+ AL AAG  EL+L   PL +SLGPENP R+N
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 515  QSRRNKEPFKFPNVGIEIGSWVSKDKFFVGWRGPPTGVDFLVDPFDGTCKFVFTMDTAFS 694
            Q RR   PFKF +V +E+G  VSK  F VGWRGP TGVDFLVDPF+GTCK +FT DT FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 695  FLGMRNHAVIKCNFKVEFLVRDIQWMKSYSDTSHLIILLYLESSPKLYYRTADDDIEESV 874
            F G   HA+IKCNFK+EFLVR+I  +K   D   L+ILL L SSP ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 875  PFDILDDDDPWIRTTDFTASGAIGRCNIYRILVQPRHGLKLRKAMQYLREQRVSIRDL-- 1048
             FD+LDDDD WIRTTD T SGAIGRCN YRI ++PR+G    KAM Y    RV + ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1049 QTQLTIQGEPDFGMPVADPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLLK 1228
            +  L ++ EPDFG+ ++DP FC    EGI+FK LFL NAVLHKGI +Q+ + ++FF LL+
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 1229 SQKEEVNIAALKHICSTKRPYFNACERLKNVQDWLLKNPKLL-RTRELDDIVEVRRLIIT 1405
            S +EEVN+AALKH+ S K P  +A ++L  +Q WLLKNPKLL RT ELDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1406 PTRAYCLPPEVELSNRVLRHYKSVADRFLRVTFMDDGMQILNKNVVTYYPAPIVRDITSN 1585
            PT+AYCLPP VELSNRVLR+YK VADRFLRVTFMD+GM+ LN+NV+TYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1586 VNAQKTAVFKRVKDITSDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVLDVLSWM 1765
             N Q+TA+F+RVK I S GFHLCGRKYSFLAFSANQLRDRSAWFFA D    V  ++SWM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1766 GRFFNKNVAKCAARMGLCFSSTYATVDVPHDNVDFELADIMRNNYDFSDGIGKISHDLAI 1945
            GRF N+NVAKCAARMG CFSSTYATV+VP   V+ EL DI RN Y FSDGIG IS DLAI
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1946 EVAQRLQLNVSPPCAYQIRFGGCKGVVACWPASKSGIHLSLRPSMNKFVSNHTILEICSW 2125
            EVA++L L+V+PP AYQIR+ GCKGVVACWP    GI LSLRPSM KF SNHTILEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2126 TRFQPGFLNRQIITLLSALNVSDNVFWNMQESMISKLNQMLESVDIAFDVVTSSCAEEGN 2305
            TRFQPGFLNRQI+TLLS+L+V D +FW MQ+ MI+ L++ML   D+AFDV+T+SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2306 TAAIMLSAGFKPRNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQG 2485
            TAA+MLSAGFKP++EPHLRGML+SIRA+Q GDLR KARI+V SGRWLMGCLDEL  LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2486 QCFVQVSNPSLENCFVKHGSEFSETKRDLQVIKGLVAVAKNPCLHPGDVRILEAVDVPSL 2665
            QCF+QVS+PSLENCFVKHGS+FS+ K++LQV+KGLV +AKNPCLHPGDVRILEAVDVPSL
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2666 HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPGKASWTAMNYAPAEAKES 2845
             HLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE +IPP K SW  MNY PAE K+ 
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 2846 LRDVKLKDVSDFFARNMVNESLGTICNAHVVHADSSDYGAMDENCXXXXXXXXXXXXFPK 3025
             R V   D+ DFF++NMV ESLG ICNAHVVHAD S++GA+DE C            FPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3026 TGKFVNMPSHLKPKLYPDFMGKEDFQSYKSTKVLGRLYRKIKDNYDIDLSDSMEINFLPR 3205
            TGK V MP  LKPK+YPDFMGKE+FQSYKS K+LG+LYR++KD  D +   S  +  +P+
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3206 EIPYDTDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKEEEVVSGHIWSMPKNSSK 3385
            +IPYDT LE  GS TFI+DAW  KCSYD QLN LLGQYKVN+EEEVV+GHIWSMPK S+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3386 KQGELKERLKNAYNALKKEFRRVFEHMHAGFDDLSNDEKNAAYEHKASAWYQVTYRPEWV 3565
            KQGELKERLK+AYN L+KEFR VFE M   FD L +DEKN  YE KASAWYQVTY P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3566 TMSLDLQDPDANGKETVMLSFPWIAADYLARIKIR-RGEMKDASTQPNKPINSLARYLSG 3742
              SL+LQ PDA    TVMLSF WIAADYLARIKIR RG     ST   KPINSL RYL+ 
Sbjct: 1140 ARSLELQIPDA-VSSTVMLSFAWIAADYLARIKIRHRGLPYSDST---KPINSLGRYLAD 1195

Query: 3743 KI 3748
            KI
Sbjct: 1196 KI 1197


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1655 bits (4287), Expect = 0.0
 Identities = 808/1206 (66%), Positives = 954/1206 (79%), Gaps = 8/1206 (0%)
 Frame = +2

Query: 155  MGSEESERGVVVTQISVGGFDDSMTAKTLLDYFEENVGIVWRCRLKTSSTPFEAYPEFAI 334
            M ++  E+  VVTQ+S GGFD  +TA+ L+ Y +  +G VWRCRLKTS TP E+YP F I
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 335  -DTTKLKRLNSYDNVIPHAFVHFAIPDAARSALDAAGRGELILEYNPLKISLGPENPRRM 511
             DT  ++R+++Y  V PHAFVHFA PD+A  A +AAG  EL     P+K+SLGPENP  +
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 512  NQSRRNKEPFKFPNVGIEIGSWVSKDKFFVGWRGPPTGVDFLVDPFDGTCKFVFTMDTAF 691
            NQ RR   PFK  +V +EIG+ VS+D+F VGWRGPP+GVDFLVDPFDG CKF FT DTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 692  SFLGMRNHAVIKCNFKVEFLVRDIQWMKSYSDTSHLIILLYLESSPKLYYRTADDDIEES 871
            SF G   HAVI+C+FK+EFLVRDI  +K Y+DTS L+ILL L S+P ++YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 872  VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILVQPRHGLKLRKAMQYLREQRVSIRDLQ 1051
            VPFD+LDDDDPWIRTTDFT SGAIGRCN YR+ + PRHG KL++A+ +LRE+RV    L+
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 1052 TQLTIQGEPDFGMPVADPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLLKS 1231
              L +  EP++ MP++DP FCIH +EG++F  +FLVNAV+HKGIF+Q+ LSD FF+LL++
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 1232 QKEEVNIAALKHICSTKRPYFNACERLKNVQDWLLKNPKLLRT-RELDDIVEVRRLIITP 1408
            Q  +VNIAAL+HICS K P F+A +RLK VQ WLLKNPKL R+ ++LDDIVE+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 1409 TRAYCLPPEVELSNRVLRHYKSVADRFLRVTFMDDGMQILNKNVVTYYPAPIVRDITSNV 1588
            TRAYCLPPEVELSNRVLR YK +AD+FLRVTFMD+G+Q +N N +TYY APIVRDITSN 
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 1589 NAQKTAVFKRVKDITSDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVLDVLSWMG 1768
             +QKT +FKRVK I +DGF+LCGRKYSFLAFS+NQLRDRSAWFFA D  TSV  + +WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 1769 RFFNKNVAKCAARMGLCFSSTYATVDVPHDNVDFELADIMRNNYDFSDGIGKISHDLAIE 1948
            +F N+N+AKCAARMG CFSSTYATV+VP      +L DI RNNY FSDGIG I+ DLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 1949 VAQRLQLNVSPPCAYQIRFGGCKGVVACWPASKSGIHLSLRPSMNKFVSNHTILEICSWT 2128
            VA++L+L V+PPCAYQIR+ GCKGVVACWPA   GI LSLR SMNKF SNHT LEICSWT
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660

Query: 2129 RFQPGFLNRQIITLLSALNVSDNVFWNMQESMISKLNQMLESVDIAFDVVTSSCAEEGNT 2308
            RFQPGFLNRQIITLLS L+V D +FW MQ  M+SKLNQM    D+AFDVVT+SCAE+GNT
Sbjct: 661  RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720

Query: 2309 AAIMLSAGFKPRNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQGQ 2488
            AAIMLSAGF P+ EPHL GMLT IRAAQ   LREK RI+V SGRWLMGCLDEL +LE GQ
Sbjct: 721  AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780

Query: 2489 CFVQVSNPSLENCFVKHGSEFSETKRDLQVIKGLVAVAKNPCLHPGDVRILEAVDVPSLH 2668
            CF+QVSNPSLE+CF KHGS FSE+K+ LQV+KG V VAKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840

Query: 2669 HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPGKASWTAMNYAPAEAKESL 2848
            HL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE LIPP K SW  M Y  AEAK+  
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900

Query: 2849 RDVKLKDVSDFFARNMVNESLGTICNAHVVHADSSDYGAMDENCXXXXXXXXXXXXFPKT 3028
            R V  +D+ DFFA+NMVNE+LG ICNAHVVHAD S+YGA+DENC            FPKT
Sbjct: 901  RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 3029 GKFVNMPSHLKPKLYPDFMGKEDFQSYKSTKVLGRLYRKIKDNY------DIDLSDSMEI 3190
            GK V MP HLKPKLYPDFMGKED+QSY S K+LGRLYR++KD+Y      D D + S E+
Sbjct: 961  GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020

Query: 3191 NFLPREIPYDTDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKEEEVVSGHIWSMP 3370
            N +  +IPYD DLE  GS+ +I DAW  KCSYD QL  LL QYKV +EEEVV+GHIWSMP
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080

Query: 3371 KNSSKKQGELKERLKNAYNALKKEFRRVFEHMHAGFDDLSNDEKNAAYEHKASAWYQVTY 3550
            K +S+KQGELKERLK +Y++LKKEFR+VFE M + F+ L+ DEKN  YE KASAWYQV Y
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140

Query: 3551 RPEWVTMSLDLQDPDANGKETVMLSFPWIAADYLARIKIRRGEMKDASTQPNKPINSLAR 3730
             P+WV  S++LQ+PDA G  + MLSF WIAADYLARIKIR        T  +KP+NSL +
Sbjct: 1141 HPKWVNKSMELQEPDAAGCAS-MLSFAWIAADYLARIKIRCRGFDGVDT--SKPVNSLVK 1197

Query: 3731 YLSGKI 3748
            YL+ +I
Sbjct: 1198 YLADRI 1203