BLASTX nr result
ID: Anemarrhena21_contig00060616
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00060616
(229 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFB73912.1| polyprotein [Citrus sinensis] 74 4e-26
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 70 9e-25
gb|AFB73911.1| polyprotein [Citrus sinensis] 71 1e-24
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 71 2e-24
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 71 2e-24
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 71 2e-24
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 69 9e-24
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 68 2e-22
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 48 1e-11
ref|XP_010244415.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 52 1e-11
emb|CAN66588.1| hypothetical protein VITISV_017097 [Vitis vinifera] 51 2e-11
ref|XP_009768624.1| PREDICTED: uncharacterized protein LOC104219... 52 3e-11
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 50 4e-11
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 48 4e-11
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 48 4e-11
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 48 4e-11
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 49 7e-11
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 48 7e-11
gb|AAF65309.1|AF229252_1 reverse transcriptase [Picea glauca] 49 7e-11
ref|WP_044908961.1| hypothetical protein, partial [[Clostridium]... 48 7e-11
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 73.9 bits (180), Expect(2) = 4e-26
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D NNRKIWLSQKNYLKKIL+RFNMQDCK ISTPLP+N
Sbjct: 1033 DRNNRKIWLSQKNYLKKILRRFNMQDCKSISTPLPVN 1069
Score = 70.9 bits (172), Expect(2) = 4e-26
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LVAGPN D I +LKAQLAREFEMKDLGP NKILGMQIHR +
Sbjct: 994 LVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDR 1034
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 70.5 bits (171), Expect(2) = 9e-25
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LVAGPN D I +LKAQLAREFEMKDLGP NKILGMQIHR +
Sbjct: 983 LVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDR 1023
Score = 69.7 bits (169), Expect(2) = 9e-25
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D NRKIWLSQKNYLKKIL RF+MQDCK ISTPLPIN
Sbjct: 1022 DRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPIN 1058
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 70.9 bits (172), Expect(2) = 1e-24
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LVAGPN D I +LKAQLAREFEMKDLGP NKILGMQIHR +
Sbjct: 994 LVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDR 1034
Score = 68.6 bits (166), Expect(2) = 1e-24
Identities = 31/37 (83%), Positives = 33/37 (89%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D NN KIWLSQKNYLKKIL+RFNMQDCK IST LP+N
Sbjct: 1033 DRNNMKIWLSQKNYLKKILRRFNMQDCKSISTSLPVN 1069
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 71.2 bits (173), Expect(2) = 2e-24
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D +RKIWLSQKNYL+K+L+RFNMQDCKPISTPLP+N
Sbjct: 1029 DRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVN 1065
Score = 67.8 bits (164), Expect(2) = 2e-24
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LV GPN D + +LKAQLAREF+MKDLGP NKILGMQIHR +
Sbjct: 990 LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 71.2 bits (173), Expect(2) = 2e-24
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D +RKIWLSQKNYL+K+L+RFNMQDCKPISTPLP+N
Sbjct: 1029 DRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVN 1065
Score = 67.8 bits (164), Expect(2) = 2e-24
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LV GPN D + +LKAQLAREF+MKDLGP NKILGMQIHR +
Sbjct: 990 LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 71.2 bits (173), Expect(2) = 2e-24
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D +RKIWLSQKNYL+K+L+RFNMQDCKPISTPLP+N
Sbjct: 1029 DRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVN 1065
Score = 67.8 bits (164), Expect(2) = 2e-24
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LV GPN D + +LKAQLAREF+MKDLGP NKILGMQIHR +
Sbjct: 990 LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 68.9 bits (167), Expect(2) = 9e-24
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D + KIWLSQKNYL+K+L+RFNMQDCKPISTPLP+N
Sbjct: 1029 DRKDMKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVN 1065
Score = 67.8 bits (164), Expect(2) = 9e-24
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LV GPN D + +LKAQLAREF+MKDLGP NKILGMQIHR +
Sbjct: 990 LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 67.8 bits (164), Expect(2) = 2e-22
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LV GPN D + +LKAQLAREF+MKDLGP NKILGMQIHR +
Sbjct: 990 LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
Score = 64.7 bits (156), Expect(2) = 2e-22
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPIN 3
D +RKIWLSQKNYL+K+L+RFNMQD PISTPLP+N
Sbjct: 1029 DRKDRKIWLSQKNYLQKVLRRFNMQDYNPISTPLPVN 1065
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 48.1 bits (113), Expect(2) = 1e-11
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = -3
Query: 98 KIWLSQKNYLKKILQRFNMQDCKPISTPL 12
K++LSQK Y++K+L+RFNM D KP+STPL
Sbjct: 1269 KLYLSQKGYIEKVLRRFNMHDAKPVSTPL 1297
Score = 47.4 bits (111), Expect(2) = 1e-11
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + IA LKAQL+ EFEMKDLG KILGM+I R +
Sbjct: 1225 LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKR 1265
>ref|XP_010244415.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104588258
[Nelumbo nucifera]
Length = 2014
Score = 52.0 bits (123), Expect(2) = 1e-11
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLP 9
D N K++LSQ+NY++K+L RF M D KP+STPLP
Sbjct: 1182 DCENGKLFLSQQNYIEKVLDRFGMSDAKPVSTPLP 1216
Score = 43.5 bits (101), Expect(2) = 1e-11
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQI 118
L+A N I LK L EFEMK+LGPT KILGM+I
Sbjct: 1143 LIASKNKSKIVKLKFLLNSEFEMKNLGPTKKILGMEI 1179
>emb|CAN66588.1| hypothetical protein VITISV_017097 [Vitis vinifera]
Length = 815
Score = 51.2 bits (121), Expect(2) = 2e-11
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPL 12
D +R++WLSQ +Y+K++L+RFNM D KP+STPL
Sbjct: 581 DRASRRLWLSQHSYVKRVLERFNMDDAKPLSTPL 614
Score = 43.9 bits (102), Expect(2) = 2e-11
Identities = 20/41 (48%), Positives = 31/41 (75%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + + +LK+ L++EF++KDLG T KILGM+IHR +
Sbjct: 542 LIAAKSMFEVNNLKSLLSKEFDIKDLGATKKILGMEIHRDR 582
>ref|XP_009768624.1| PREDICTED: uncharacterized protein LOC104219626 [Nicotiana
sylvestris]
Length = 419
Score = 52.0 bits (123), Expect(2) = 3e-11
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -2
Query: 213 NNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
N IA LK QL++ F MKDLGPT KILG+QIHRH+
Sbjct: 36 NKSRIAVLKKQLSKSFAMKDLGPTKKILGIQIHRHR 71
Score = 42.7 bits (99), Expect(2) = 3e-11
Identities = 16/32 (50%), Positives = 27/32 (84%)
Frame = -3
Query: 107 NNRKIWLSQKNYLKKILQRFNMQDCKPISTPL 12
+ +++++SQK Y++K+L+RFNM D K +STPL
Sbjct: 72 DRKELFMSQKQYIEKVLKRFNMTDAKVVSTPL 103
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 50.4 bits (119), Expect(2) = 4e-11
Identities = 23/40 (57%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Frame = -3
Query: 128 GCKFT-DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPL 12
G K T D N+ ++LSQ++Y+KK+LQRFNM D KP+STP+
Sbjct: 952 GMKITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPI 991
Score = 43.5 bits (101), Expect(2) = 4e-11
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + + I LK QL+ EF+MKDLG KILGM+I R +
Sbjct: 919 LIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMKITRDR 959
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 48.1 bits (113), Expect(2) = 4e-11
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = -3
Query: 98 KIWLSQKNYLKKILQRFNMQDCKPISTPL 12
K++LSQK Y++K+L+RFNM D KP+STPL
Sbjct: 1034 KLYLSQKGYIEKVLRRFNMHDAKPVSTPL 1062
Score = 45.8 bits (107), Expect(2) = 4e-11
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + I LKAQL+ EFEMKDLG KILGM+I R +
Sbjct: 990 LIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRER 1030
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 48.1 bits (113), Expect(2) = 4e-11
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = -3
Query: 98 KIWLSQKNYLKKILQRFNMQDCKPISTPL 12
K++LSQK Y++K+L+RFNM D KP+STPL
Sbjct: 941 KLYLSQKGYIEKVLRRFNMHDAKPVSTPL 969
Score = 45.8 bits (107), Expect(2) = 4e-11
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + I LKAQL+ EFEMKDLG KILGM+I R +
Sbjct: 897 LIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRER 937
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 48.1 bits (113), Expect(2) = 4e-11
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = -3
Query: 98 KIWLSQKNYLKKILQRFNMQDCKPISTPL 12
K++LSQK Y++K+L+RFNM D KP+STPL
Sbjct: 804 KLYLSQKGYIEKVLRRFNMHDAKPVSTPL 832
Score = 45.8 bits (107), Expect(2) = 4e-11
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + I LKAQL+ EFEMKDLG KILGM+I R +
Sbjct: 760 LIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRER 800
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 49.3 bits (116), Expect(2) = 7e-11
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPL 12
D N+ ++LSQ++Y+KK+LQRFNM D KP+STP+
Sbjct: 1047 DRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPI 1080
Score = 43.9 bits (102), Expect(2) = 7e-11
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + + I LK QL+ EF+MKDLG KILGM+I R +
Sbjct: 1008 LIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDR 1048
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 48.1 bits (113), Expect(2) = 7e-11
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = -3
Query: 98 KIWLSQKNYLKKILQRFNMQDCKPISTPL 12
K++LSQK Y++K+L+RFNM D KP+STPL
Sbjct: 868 KLYLSQKGYIEKVLRRFNMHDAKPVSTPL 896
Score = 45.1 bits (105), Expect(2) = 7e-11
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+A + IA LKAQL+ EFEMKDLG KILG++I + +
Sbjct: 824 LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGIEITKER 864
>gb|AAF65309.1|AF229252_1 reverse transcriptase [Picea glauca]
Length = 542
Score = 48.5 bits (114), Expect(2) = 7e-11
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLPI 6
D NRK+WL+Q+ Y++ ILQRFN+ KP+ P+PI
Sbjct: 311 DRANRKLWLNQRKYVETILQRFNIHGSKPVKVPIPI 346
Score = 44.7 bits (104), Expect(2) = 7e-11
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
L+ G N D I ++K+QL+ +F+MKDLG N ILGM I R +
Sbjct: 272 LLVGNNMDVIKEVKSQLSSKFDMKDLGAANFILGMDIKRDR 312
>ref|WP_044908961.1| hypothetical protein, partial [[Clostridium] innocuum]
Length = 312
Score = 47.8 bits (112), Expect(2) = 7e-11
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = -3
Query: 113 DINNRKIWLSQKNYLKKILQRFNMQDCKPISTPLP 9
D NRK+ LSQ +Y++K+LQRF+M++ K +STPLP
Sbjct: 223 DRKNRKLSLSQADYIEKVLQRFSMENAKAVSTPLP 257
Score = 45.4 bits (106), Expect(2) = 7e-11
Identities = 24/41 (58%), Positives = 28/41 (68%)
Frame = -2
Query: 228 LVAGPNNDCIADLKAQLAREFEMKDLGPTNKILGMQIHRHK 106
LVAG N D I LK QLA+ F MKDLG +ILGM+I R +
Sbjct: 184 LVAGSNMDHIKGLKQQLAKSFAMKDLGAEKQILGMKICRDR 224