BLASTX nr result
ID: Anemarrhena21_contig00058052
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00058052
(267 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 41 6e-10
emb|CAN63736.1| hypothetical protein VITISV_037249 [Vitis vinifera] 42 6e-10
ref|XP_008363252.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 37 6e-09
ref|XP_008461895.1| PREDICTED: uncharacterized protein LOC103500... 42 6e-09
ref|XP_008238300.1| PREDICTED: uncharacterized protein LOC103336... 39 1e-08
ref|XP_010520610.1| PREDICTED: uncharacterized protein LOC104799... 39 4e-08
gb|ABA96256.1| retrotransposon protein, putative, Ty1-copia subc... 40 5e-08
ref|XP_008388960.1| PREDICTED: DNA polymerase zeta catalytic sub... 37 1e-07
ref|XP_008387315.1| PREDICTED: uncharacterized protein LOC103449... 37 1e-07
ref|XP_008791387.1| PREDICTED: uncharacterized protein LOC103708... 37 2e-07
gb|AAV44166.1| putative polyprotein [Oryza sativa Japonica Group] 37 3e-07
emb|CAN63175.1| hypothetical protein VITISV_027195 [Vitis vinifera] 40 3e-07
emb|CAN76565.1| hypothetical protein VITISV_010942 [Vitis vinifera] 41 3e-07
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus] 38 6e-07
gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr... 39 6e-07
gb|ABI34306.1| Polyprotein, putative [Solanum demissum] 37 7e-07
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera] 37 8e-07
emb|CAN80619.1| hypothetical protein VITISV_005064 [Vitis vinifera] 37 8e-07
gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subc... 39 1e-06
gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-... 39 1e-06
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 41.2 bits (95), Expect(3) = 6e-10
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+IS+IRVL+A +I K VIH MDVKT F N +L E
Sbjct: 858 RISSIRVLLALASIHKLVIHQMDVKTTFLNGELEE 892
Score = 38.1 bits (87), Expect(3) = 6e-10
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KGF+QK +I +FD +APV +
Sbjct: 832 YKARLVAKGFTQKHNIDYFDTFAPVTR 858
Score = 30.0 bits (66), Expect(3) = 6e-10
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+PKG + I K IFK K P+ +IE
Sbjct: 804 VDLPKGAKPIGCKWIFKKKYHPDGSIE 830
>emb|CAN63736.1| hypothetical protein VITISV_037249 [Vitis vinifera]
Length = 839
Score = 41.6 bits (96), Expect(3) = 6e-10
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KGF QKES+ FFD Y+PV +
Sbjct: 542 YKARLVAKGFKQKESLDFFDTYSPVTR 568
Score = 38.5 bits (88), Expect(3) = 6e-10
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IRVLIA VA+ IH MDVKT F N +L E
Sbjct: 568 RITSIRVLIAIVALHNLEIHQMDVKTTFLNGELEE 602
Score = 29.3 bits (64), Expect(3) = 6e-10
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G + + K IFK K++P+ TI+
Sbjct: 514 VDLPPGNKHLGCKWIFKKKMKPDGTID 540
>ref|XP_008363252.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC103426950 [Malus domestica]
Length = 724
Score = 36.6 bits (83), Expect(3) = 6e-09
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KG+ QK + FFD Y+PV +
Sbjct: 57 YKARLVAKGYRQKHGLDFFDTYSPVTR 83
Score = 36.6 bits (83), Expect(3) = 6e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IR+LIA A+ IH MDVKT F N +L E
Sbjct: 83 RITSIRLLIAIAALHNMEIHQMDVKTAFLNGBLDE 117
Score = 32.7 bits (73), Expect(3) = 6e-09
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G + I +K IFK KL+P+ TI+
Sbjct: 29 VDLPPGNKPIGYKWIFKKKLKPDGTID 55
>ref|XP_008461895.1| PREDICTED: uncharacterized protein LOC103500390 [Cucumis melo]
Length = 610
Score = 41.6 bits (96), Expect(3) = 6e-09
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I+ IRVLIA VAI +IH +DVKTVF N DL E
Sbjct: 569 KITTIRVLIALVAIHSLLIHQIDVKTVFLNGDLEE 603
Score = 33.9 bits (76), Expect(3) = 6e-09
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCKSVT 94
YK R VV G++QK+ I +FD Y+ V K T
Sbjct: 543 YKIRLVVVGYTQKQGIDYFDTYSSVTKITT 572
Score = 30.4 bits (67), Expect(3) = 6e-09
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G++ I K IF+ K++PN +IE
Sbjct: 515 VDLPMGSKPIKCKWIFERKIKPNGSIE 541
>ref|XP_008238300.1| PREDICTED: uncharacterized protein LOC103336939 [Prunus mume]
Length = 753
Score = 38.5 bits (88), Expect(3) = 1e-08
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KG+ QKE + FFD Y+PV +
Sbjct: 606 YKARLVAKGYRQKEGLDFFDTYSPVMR 632
Score = 35.4 bits (80), Expect(3) = 1e-08
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -3
Query: 109 LQISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
++I++IR+LIA AI IH MDVK F N DL E
Sbjct: 631 MRITSIRMLIAIAAIYNMEIHQMDVKIEFLNGDLEE 666
Score = 30.8 bits (68), Expect(3) = 1e-08
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
V++P G + I +K IFK KL+P+ TI+
Sbjct: 578 VNLPPGNKPIGYKWIFKKKLKPDGTID 604
>ref|XP_010520610.1| PREDICTED: uncharacterized protein LOC104799668 [Tarenaya
hassleriana]
Length = 310
Score = 38.9 bits (89), Expect(3) = 4e-08
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR VVKGF Q+E + +FD Y+PV +
Sbjct: 204 YKARLVVKGFRQREGLDYFDTYSPVSR 230
Score = 37.4 bits (85), Expect(3) = 4e-08
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IRVLIA + + IH MDVKT F N DL E
Sbjct: 230 RITSIRVLIALAVVYELQIHQMDVKTAFLNGDLEE 264
Score = 26.9 bits (58), Expect(3) = 4e-08
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G + + K IFK KL+ + TI+
Sbjct: 176 VDLPPGNKPLGSKWIFKRKLKDDGTID 202
>gb|ABA96256.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 506
Score = 40.0 bits (92), Expect(3) = 5e-08
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCKSVT 94
YKAR V KG++QKE FFDIY+PV + T
Sbjct: 100 YKARLVPKGYTQKEGEDFFDIYSPVARLTT 129
Score = 33.5 bits (75), Expect(3) = 5e-08
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+++ IRVL+A A ++H MDVKT F N +L E
Sbjct: 126 RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEE 160
Score = 29.3 bits (64), Expect(3) = 5e-08
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
V+ P G + I K +FK K RPN TIE
Sbjct: 72 VERPYGCKPIGCKWVFKKKFRPNGTIE 98
>ref|XP_008388960.1| PREDICTED: DNA polymerase zeta catalytic subunit-like [Malus
domestica]
Length = 2068
Score = 37.4 bits (85), Expect(3) = 1e-07
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IR LIA A+ F IH MDVKT F N +L E
Sbjct: 1999 RITSIRTLIAIAAVYNFDIHQMDVKTAFLNGELDE 2033
Score = 35.8 bits (81), Expect(3) = 1e-07
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
+KAR V KG+ QKE + +FD Y+PV +
Sbjct: 1973 FKARLVAKGYHQKEGLDYFDTYSPVSR 1999
Score = 28.5 bits (62), Expect(3) = 1e-07
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G++ I K IFK KL+ + TI+
Sbjct: 1945 VDLPPGSKPIGHKWIFKKKLKADGTID 1971
>ref|XP_008387315.1| PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]
Length = 2699
Score = 37.4 bits (85), Expect(3) = 1e-07
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IR LIA A+ F IH MDVKT F N +L E
Sbjct: 2332 RITSIRTLIAIAAVYNFDIHQMDVKTAFLNGELDE 2366
Score = 35.8 bits (81), Expect(3) = 1e-07
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
+KAR V KG+ QKE + +FD Y+PV +
Sbjct: 2306 FKARLVAKGYRQKEGLDYFDTYSPVSR 2332
Score = 28.1 bits (61), Expect(3) = 1e-07
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G++ I K IFK KL+ + TI+
Sbjct: 2278 VDLPLGSKPIGHKWIFKKKLKADGTID 2304
>ref|XP_008791387.1| PREDICTED: uncharacterized protein LOC103708304 [Phoenix
dactylifera]
Length = 1278
Score = 37.0 bits (84), Expect(3) = 2e-07
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+IS+IR LI+ +I F IH MDVKT F NE L E
Sbjct: 401 RISSIRTLISLASICDFKIHQMDVKTAFLNEILEE 435
Score = 36.2 bits (82), Expect(3) = 2e-07
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KGF Q + I +FD YAP+ +
Sbjct: 375 YKARLVAKGFRQSKGIDYFDTYAPMAR 401
Score = 27.7 bits (60), Expect(3) = 2e-07
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P ++ I K IFK KLRP+ +I+
Sbjct: 347 VDLPSCSKPIGCKWIFKKKLRPDGSID 373
>gb|AAV44166.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1342
Score = 37.4 bits (85), Expect(3) = 3e-07
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCKSVT 94
YK R V KG++QKE FFD Y+PV + T
Sbjct: 936 YKVRLVAKGYTQKEGEDFFDTYSPVARLTT 965
Score = 33.5 bits (75), Expect(3) = 3e-07
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+++ IRVL+A A ++H MDVKT F N +L E
Sbjct: 962 RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEE 996
Score = 29.3 bits (64), Expect(3) = 3e-07
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
V+ P G + + K +FK KLRP+ TIE
Sbjct: 908 VECPYGCKPVGCKWVFKKKLRPDGTIE 934
>emb|CAN63175.1| hypothetical protein VITISV_027195 [Vitis vinifera]
Length = 338
Score = 40.0 bits (92), Expect(3) = 3e-07
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KGF QKE + FFD Y+PV +
Sbjct: 153 YKARLVAKGFKQKEGLDFFDTYSPVTR 179
Score = 32.0 bits (71), Expect(3) = 3e-07
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IR LIA + IH MD KT F N +L E
Sbjct: 179 RITSIRXLIARTTLHNLKIHQMDAKTTFLNGELEE 213
Score = 28.1 bits (61), Expect(3) = 3e-07
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
+D+P G + + K IFK K++P+ TI+
Sbjct: 125 MDLPPGNKPLGCKWIFKKKMKPDGTID 151
>emb|CAN76565.1| hypothetical protein VITISV_010942 [Vitis vinifera]
Length = 839
Score = 40.8 bits (94), Expect(2) = 3e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IRVLIA VA+ F IH MDVKT F N +L E
Sbjct: 518 RITSIRVLIAIVALHNFEIHQMDVKTTFLNGELEE 552
Score = 40.0 bits (92), Expect(2) = 3e-07
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KGF QKE + FFD Y+PV +
Sbjct: 492 YKARLVAKGFKQKEDLDFFDTYSPVTR 518
>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 38.1 bits (87), Expect(3) = 6e-07
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KG+ Q+E + +FD YAPV +
Sbjct: 911 YKARLVAKGYRQREGVDYFDTYAPVAR 937
Score = 34.7 bits (78), Expect(3) = 6e-07
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I +IR LIA A+K IH MDVKT F N L E
Sbjct: 937 RIGSIRTLIAVSALKGLYIHQMDVKTAFLNGYLNE 971
Score = 26.2 bits (56), Expect(3) = 6e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 263 DVPKGTRLISFK*IFKGKLRPNSTI 189
D+PKG + I K IFK K P+ +I
Sbjct: 884 DLPKGKKPIGSKWIFKRKYHPDGSI 908
>gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1034
Score = 38.9 bits (89), Expect(3) = 6e-07
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
+KAR VV+GF QKE I +FD YAPV +
Sbjct: 821 FKARLVVQGFRQKEGIDYFDTYAPVVR 847
Score = 35.8 bits (81), Expect(3) = 6e-07
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -3
Query: 109 LQISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
++IS+IR+LI +I VIH MDVKT F N L E
Sbjct: 846 VRISSIRLLIGLASIHNLVIHQMDVKTAFLNGVLEE 881
Score = 24.3 bits (51), Expect(3) = 6e-07
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 263 DVPKGTRLISFK*IFKGKLRPNSTIE 186
D+P G + ++ K IFK K++ + TI+
Sbjct: 794 DLPPGCKPLACKWIFKKKIKVDGTID 819
>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
Length = 1691
Score = 37.4 bits (85), Expect(3) = 7e-07
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IR+LIA AI IH MDVKT F N DL E
Sbjct: 873 RITSIRLLIAMAAIFDLQIHQMDVKTAFLNGDLNE 907
Score = 35.4 bits (80), Expect(3) = 7e-07
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KGF Q E + FFD ++PV +
Sbjct: 847 YKARLVAKGFKQLEGLEFFDTFSPVTR 873
Score = 25.8 bits (55), Expect(3) = 7e-07
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G + I K + + KL+P+ +I+
Sbjct: 819 VDLPPGCKTIGCKWVLRKKLKPDGSID 845
>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 36.6 bits (83), Expect(3) = 8e-07
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+I++IR+++A A++ IH MDVKT F N DL E
Sbjct: 686 RINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDE 720
Score = 36.2 bits (82), Expect(3) = 8e-07
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V+KG+ Q E + +FD Y+PV +
Sbjct: 660 YKARLVIKGYRQTEGLDYFDTYSPVTR 686
Score = 25.8 bits (55), Expect(3) = 8e-07
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIEYTRQDMWLK 159
VD+P G + +S K IFK K++ + +I+ + + +K
Sbjct: 632 VDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIK 667
>emb|CAN80619.1| hypothetical protein VITISV_005064 [Vitis vinifera]
Length = 965
Score = 37.4 bits (85), Expect(3) = 8e-07
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
++++IRVLIA +I VIH MDVK F N DL E
Sbjct: 606 RLASIRVLIALASIHNLVIHQMDVKIAFLNGDLEE 640
Score = 30.8 bits (68), Expect(3) = 8e-07
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 266 VDVPKGTRLISFK*IFKGKLRPNSTIE 186
VD+P G + I K IFK KL+ N +IE
Sbjct: 552 VDLPPGVKTIGCKWIFKSKLKQNGSIE 578
Score = 30.4 bits (67), Expect(3) = 8e-07
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCK 103
YKAR V KGF Q+ + +F+ +A V +
Sbjct: 580 YKARLVAKGFKQRNEVDYFNTFAHVTR 606
>gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1397
Score = 38.5 bits (88), Expect(3) = 1e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCKSVT 94
YKAR V KG++QKE FFD Y+PV + T
Sbjct: 931 YKARFVGKGYTQKEGEDFFDTYSPVARLTT 960
Score = 32.3 bits (72), Expect(3) = 1e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+++ IRVL++ A ++H MDVKT F N +L E
Sbjct: 957 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDE 991
Score = 27.3 bits (59), Expect(3) = 1e-06
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 257 PKGTRLISFK*IFKGKLRPNSTIE 186
P G + + K +FK KLRP+ TIE
Sbjct: 906 PYGCKPVGCKWVFKKKLRPDGTIE 929
>gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1393
Score = 38.5 bits (88), Expect(3) = 1e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1
Query: 183 YKARHVVKGFSQKESIGFFDIYAPVCKSVT 94
YKAR V KG++QKE FFD Y+PV + T
Sbjct: 931 YKARFVGKGYTQKEGEDFFDTYSPVARLTT 960
Score = 32.3 bits (72), Expect(3) = 1e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 106 QISNIRVLIA*VAIKKFVIH*MDVKTVFFNEDLTE 2
+++ IRVL++ A ++H MDVKT F N +L E
Sbjct: 957 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDE 991
Score = 27.3 bits (59), Expect(3) = 1e-06
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 257 PKGTRLISFK*IFKGKLRPNSTIE 186
P G + + K +FK KLRP+ TIE
Sbjct: 906 PYGCKPVGCKWVFKKKLRPDGTIE 929