BLASTX nr result
ID: Anemarrhena21_contig00044546
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00044546
(267 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimi... 65 1e-08
gb|AEX94816.1| RNA polymerase beta' subunit (chloroplast) [Aspar... 65 2e-08
gb|AEX94815.1| RNA polymerase beta' subunit (chloroplast) [Aspar... 65 2e-08
gb|AEX94801.1| RNA polymerase beta' subunit (chloroplast) [Anema... 65 2e-08
ref|YP_003540921.1| DNA-directed RNA polymerase beta' chain [Pho... 64 3e-08
gb|AGE93274.1| RNA polymerase beta' subunit [Chamaedorea seifrizii] 64 3e-08
gb|AEZ49474.1| RNA polymerase beta'' subunit, partial [Chamaedor... 64 3e-08
gb|AKF00915.1| RNA polymerase beta' subunit (chloroplast) [Areca... 64 4e-08
gb|AKF01597.1| RNA polymerase beta' subunit (chloroplast) [Heter... 64 5e-08
gb|AKF01287.1| RNA polymerase beta' subunit (chloroplast) [Dicty... 64 5e-08
gb|AKF01065.1| RNA polymerase beta' subunit (chloroplast) [Bactr... 64 5e-08
gb|AKF00632.1| RNA polymerase beta' subunit (chloroplast) [Reinh... 64 5e-08
gb|AKF00566.1| RNA polymerase beta' subunit (chloroplast) [Reinh... 64 5e-08
gb|AKF00428.1| RNA polymerase beta' subunit (chloroplast) [Reinh... 64 5e-08
gb|AKF00162.1| RNA polymerase beta' subunit (chloroplast) [Pelag... 64 5e-08
ref|YP_007475779.1| RNA polymerase beta' subunit [Pseudophoenix ... 64 5e-08
ref|YP_006073094.1| RNA polymerase beta' subunit (chloroplast) [... 64 5e-08
gb|AEZ49495.1| RNA polymerase beta'' subunit, partial [Ravenea h... 64 5e-08
gb|ABU85372.1| RNA polymerase beta subunit [Elaeis oleifera] 64 5e-08
gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii] 63 7e-08
>gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimia altissima]
Length = 1386
Score = 65.5 bits (158), Expect = 1e-08
Identities = 41/84 (48%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKKR--------REQIDLYL 81
EIPIN LRRNSIFAYFDDP+YRRK GIT G VDSIVKK +E Y
Sbjct: 599 EIPINGILRRNSIFAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKYQ 658
Query: 80 QRLAYVTFTKATCHSFPLASFILI 9
R+ F H P +S I++
Sbjct: 659 MRVDRFFFIPEEVHILPGSSSIMV 682
>gb|AEX94816.1| RNA polymerase beta' subunit (chloroplast) [Asparagus asparagoides]
Length = 1389
Score = 65.1 bits (157), Expect = 2e-08
Identities = 40/84 (47%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKKR--------REQIDLYL 81
EIPIN LRRNSI AYFDDP+YRRK GIT G VDSIVKK +E Y
Sbjct: 601 EIPINGILRRNSIIAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKYQ 660
Query: 80 QRLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 661 MKVDRFFFIPEEVHILPGSSFIMV 684
>gb|AEX94815.1| RNA polymerase beta' subunit (chloroplast) [Asparagus officinalis]
gi|374413193|gb|AEZ49471.1| RNA polymerase beta''
subunit, partial [Asparagus officinalis]
Length = 1389
Score = 65.1 bits (157), Expect = 2e-08
Identities = 40/84 (47%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKKR--------REQIDLYL 81
EIPIN LRRNSI AYFDDP+YRRK GIT G VDSIVKK +E Y
Sbjct: 601 EIPINGILRRNSIIAYFDDPRYRRKSSGITKYGTVEVDSIVKKEDLIEYRGAKEFSPKYQ 660
Query: 80 QRLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 661 MKVDRFFFIPEEVHILPGSSFIMV 684
>gb|AEX94801.1| RNA polymerase beta' subunit (chloroplast) [Anemarrhena
asphodeloides]
Length = 1384
Score = 65.1 bits (157), Expect = 2e-08
Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 11/84 (13%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGIT---NMGVDSIVKKR--------REQIDLYL 81
EIPIN LRRNSI AYFDDP+YRRKG GIT +GVDSIVKK +E Y
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRKGSGITKYGTVGVDSIVKKEDLIEYRGAKEFSPKYQ 658
Query: 80 QRLAYVTFTKATCHSFPLASFILI 9
++ F H P +S I++
Sbjct: 659 MKVDRFFFIPEEVHILPGSSSIMV 682
>ref|YP_003540921.1| DNA-directed RNA polymerase beta' chain [Phoenix dactylifera]
gi|290790908|gb|ADD63163.1| DNA-directed RNA polymerase
beta' chain (chloroplast) [Phoenix dactylifera]
gi|294620567|gb|ADF28136.1| DNA-directed RNA polymerase
beta' chain (chloroplast) [Phoenix dactylifera]
Length = 1381
Score = 64.3 bits (155), Expect = 3e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKKR-------REQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK ++ L Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRGAKEFSLKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AGE93274.1| RNA polymerase beta' subunit [Chamaedorea seifrizii]
Length = 1371
Score = 64.3 bits (155), Expect = 3e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKKRR-------EQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKENLIEYRGAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++A F H P +SFI++
Sbjct: 655 KVARFFFILEEVHILPGSSFIMV 677
>gb|AEZ49474.1| RNA polymerase beta'' subunit, partial [Chamaedorea seifrizii]
Length = 1375
Score = 64.3 bits (155), Expect = 3e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKKRR-------EQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK ++ Q
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKENLIEYRGAKEFSPKYQ 658
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++A F H P +SFI++
Sbjct: 659 KVARFFFILEEVHILPGSSFIMV 681
>gb|AKF00915.1| RNA polymerase beta' subunit (chloroplast) [Areca vestiaria]
Length = 1371
Score = 63.9 bits (154), Expect = 4e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KIDRFFFILEEVHILPGSSFIMV 677
>gb|AKF01597.1| RNA polymerase beta' subunit (chloroplast) [Heterospathe
cagayanensis]
Length = 1371
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AKF01287.1| RNA polymerase beta' subunit (chloroplast) [Dictyosperma album]
Length = 1371
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AKF01065.1| RNA polymerase beta' subunit (chloroplast) [Bactris major]
Length = 1371
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AKF00632.1| RNA polymerase beta' subunit (chloroplast) [Reinhardtia simplex]
Length = 1371
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AKF00566.1| RNA polymerase beta' subunit (chloroplast) [Reinhardtia
paiewonskiana]
Length = 1371
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AKF00428.1| RNA polymerase beta' subunit (chloroplast) [Reinhardtia latisecta]
Length = 1371
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AKF00162.1| RNA polymerase beta' subunit (chloroplast) [Pelagodoxa henryana]
Length = 1366
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>ref|YP_007475779.1| RNA polymerase beta' subunit [Pseudophoenix vinifera]
gi|449326260|gb|AGE92844.1| RNA polymerase beta' subunit
[Pseudophoenix vinifera]
Length = 1376
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>ref|YP_006073094.1| RNA polymerase beta' subunit (chloroplast) [Elaeis guineensis]
gi|325305698|gb|ADZ10859.1| RNA polymerase beta' subunit
(chloroplast) [Elaeis guineensis]
Length = 1371
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 595 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 654
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 655 KVDRFFFILEEVHILPGSSFIMV 677
>gb|AEZ49495.1| RNA polymerase beta'' subunit, partial [Ravenea hildebrandtii]
Length = 1385
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 658
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 659 KVDRFFFILEEVHILPGSSFIMV 681
>gb|ABU85372.1| RNA polymerase beta subunit [Elaeis oleifera]
Length = 1375
Score = 63.5 bits (153), Expect = 5e-08
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK-------RREQIDLYLQ 78
EIPIN LRRNSI AYFDDP+YRR GIT G VDSI+KK R ++ Q
Sbjct: 599 EIPINGILRRNSILAYFDDPRYRRNSSGITKYGTIEVDSIIKKEDLIEYRRAKEFSPKYQ 658
Query: 77 RLAYVTFTKATCHSFPLASFILI 9
++ F H P +SFI++
Sbjct: 659 KVDRFFFILEEVHILPGSSFIMV 681
>gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii]
Length = 1386
Score = 63.2 bits (152), Expect = 7e-08
Identities = 33/43 (76%), Positives = 34/43 (79%), Gaps = 3/43 (6%)
Frame = -2
Query: 227 EIPINVFLRRNSIFAYFDDPQYRRKGLGITNMG---VDSIVKK 108
EIPIN LRRNSIFAYFDDP+YRRK GIT G VDSIVKK
Sbjct: 599 EIPINGILRRNSIFAYFDDPRYRRKSSGITKYGTVEVDSIVKK 641