BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00040369
         (911 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein...    61   1e-24
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...    60   2e-23
ref|XP_008453742.1| PREDICTED: RNA polymerase-associated protein...    58   2e-23
ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein...    57   7e-23
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...    59   2e-22
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...    59   4e-22
gb|KDO47969.1| hypothetical protein CISIN_1g006477mg [Citrus sin...    59   6e-22
ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein...    55   7e-22
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...    57   2e-21
ref|XP_004493842.1| PREDICTED: protein RTF1 homolog [Cicer ariet...    56   2e-21
ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein...    59   2e-21
ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein...    59   2e-21
ref|XP_006853567.1| PREDICTED: RNA polymerase-associated protein...    62   3e-21
ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein...    59   4e-21
ref|XP_010418054.1| PREDICTED: RNA polymerase-associated protein...    57   7e-21
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...    53   1e-20
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....    53   1e-20
emb|CDO99584.1| unnamed protein product [Coffea canephora]             52   1e-20
ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein...    55   2e-20
ref|XP_009399689.1| PREDICTED: RNA polymerase-associated protein...    54   2e-20

>ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nelumbo
           nucifera]
          Length = 666

 Score = 61.2 bits (147), Expect(3) = 1e-24
 Identities = 28/53 (52%), Positives = 40/53 (75%)
 Frame = -3

Query: 906 TGHAIYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           +G +IYR CM +  V++ +P++QY+L++  T K LNCIW NE+SAA WQMA V
Sbjct: 318 SGQSIYRLCMVKN-VDATDPNKQYKLENRTTYKYLNCIWGNESSAARWQMARV 369



 Score = 55.8 bits (133), Expect(3) = 1e-24
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 19/119 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVER G +M   + V+EK   I K N+ ++S               SR L I  E+   R
Sbjct: 385 EVERHGGRMPTKQDVSEKREAIQKTNTFVYSAATVKQMLQEKKTASSRPLNIAAEKERLR 444

Query: 565 GRLKWQKVTRTKLR*----VKLKEPEIISQKSNQKDKMALSLAEMNGRN*AENFKNALE 401
             ++  +  R +        +L+E E +S+++ +KD  A+ LAEMN RN AENFKNA E
Sbjct: 445 REMEVAESRRDEAEVERIRARLQELEAMSRQAKEKDSKAVRLAEMNKRNRAENFKNASE 503



 Score = 44.3 bits (103), Expect(3) = 1e-24
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGDGNAGEGATS 226
           K +  SLKAG   YD FSR+WTRSRN ++S  GE    +         +   ++G GA +
Sbjct: 505 KPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGEGAPTANGEAAVASAVSVASSGTGARA 564

Query: 225 TASENLQGSTRGAAGVLG 172
            A   +  +        G
Sbjct: 565 AAEAGIAATAAALEAAAG 582


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|778690563|ref|XP_011653135.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|700198089|gb|KGN53247.1| hypothetical
           protein Csa_4G038650 [Cucumis sativus]
          Length = 660

 Score = 60.5 bits (145), Expect(3) = 2e-23
 Identities = 30/59 (50%), Positives = 40/59 (67%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCLKRNY 718
           IYR C+ R  V++  PD+QY+L++ +T K LN IW NEASAA WQMA+V     L+  Y
Sbjct: 317 IYRLCLVRN-VDATEPDRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEY 374



 Score = 49.7 bits (117), Expect(3) = 2e-23
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
 Frame = -3

Query: 375 KAGYDQFSRKWTRSRNSFMSN*GEENDVSYVNG-----------TATMCLGDGNAGEGAT 229
           +AGYD FSR+WTRSRN ++SN GE N  +   G           T T   G  +AG  AT
Sbjct: 508 EAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAAT 567

Query: 228 STASENLQGS 199
           + A E   G+
Sbjct: 568 AAALEAAAGA 577



 Score = 47.8 bits (112), Expect(3) = 2e-23
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVER+G +ML  + + EK   I K+N+ ++S+               R L I  E+   R
Sbjct: 380 EVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLR 439

Query: 565 GRLKWQ-------KVTRTKLR*VKLKEPEIISQKSNQKDKMALSLAEMNGRN*AENFKNA 407
             +          +V R K R  +L+     S++   KD  A+ LAEMN +N  ENFKNA
Sbjct: 440 REMDVAVSKNDEAEVERIKTRLQQLEA----SRRLQMKDAKAIRLAEMNRKNRVENFKNA 495

Query: 406 LE 401
            E
Sbjct: 496 SE 497


>ref|XP_008453742.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           melo] gi|659107574|ref|XP_008453743.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           melo]
          Length = 660

 Score = 58.2 bits (139), Expect(3) = 2e-23
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCLKRNY 718
           IYR C+ R  V++  PD+QY+L++ +T K LN IW NE SAA WQMA+V     L+  Y
Sbjct: 317 IYRLCLVRN-VDATEPDRQYKLENKITHKYLNVIWGNENSAARWQMAMVSDSAPLEDEY 374



 Score = 52.0 bits (123), Expect(3) = 2e-23
 Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -3

Query: 375 KAGYDQFSRKWTRSRNSFMSN*GEENDVSYVNG---TATMCLGDGNAGEGATSTASENLQ 205
           +AGYD FSR+WTRSRN ++SN GE N  +   G   T T  L     G G TS A     
Sbjct: 508 EAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDTVTPALESTRTGAGGTSDAGMAAT 567

Query: 204 GSTRGAAGVLGEKQD 160
            +   AA   G+  D
Sbjct: 568 AAALEAAAGAGKLVD 582



 Score = 47.4 bits (111), Expect(3) = 2e-23
 Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVER+G +ML  + V EK   I K+N+ ++S+               R L I  E+   R
Sbjct: 380 EVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLR 439

Query: 565 GRLKWQ-------KVTRTKLR*VKLKEPEIISQKSNQKDKMALSLAEMNGRN*AENFKNA 407
             +          +V R K R  +L+     S++   KD  A+ LAEMN +N  ENFKNA
Sbjct: 440 REMDVAVSKNDEAEVERIKGRLQQLEA----SRRLQMKDAKAIRLAEMNRKNRVENFKNA 495

Query: 406 LE 401
            E
Sbjct: 496 SE 497


>ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Vitis
           vinifera]
          Length = 658

 Score = 57.4 bits (137), Expect(3) = 7e-23
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR CM R  V++ +PD+ Y+L++  T K LNC+W NE S+A WQMA+V
Sbjct: 314 IYRLCMVRN-VDASDPDRHYQLENKTTYKYLNCVWGNENSSARWQMAMV 361



 Score = 54.3 bits (129), Expect(3) = 7e-23
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 18/120 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVERSG +ML  + + EK   I K N  ++S               SR L I  E+   R
Sbjct: 377 EVERSGSRMLTKQDILEKREAIQKTNMFVYSAATGKQMLQEKKSVSSRPLNIVAEKDRLR 436

Query: 565 GRLK--WQKVTRTKLR*VKLKEPEI-ISQKSNQKDKMALSLAEMNGRN*AENFKNALESE 395
             ++    K  + ++  +  +  ++  S++S +KD  A+ LAEMN +N AENFKNA ES+
Sbjct: 437 REMEVALSKHDQAEVERINTRLQQLEASRRSKEKDAKAIRLAEMNRKNRAENFKNASESK 496



 Score = 43.9 bits (102), Expect(3) = 7e-23
 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYV-NGTATMCLGDGNAGEGAT 229
           K +  SLKAG   YD FSR+WTRSRN ++S  G  ++ + V NG A         G G+ 
Sbjct: 496 KRVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGGDEAAAVANGEAPAAF----VGAGSN 551

Query: 228 STASENLQGSTRGAAGVLGEKQDLG 154
            T  +  +      A  L    D G
Sbjct: 552 GTGGKGAEVGVAATAAALEAAADAG 576


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
           gi|557524836|gb|ESR36142.1| hypothetical protein
           CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score = 58.9 bits (141), Expect(3) = 2e-22
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR CM R  V++  PD+ Y+L++  TCK LN  W NE+SAA WQMA+V
Sbjct: 303 IYRLCMVRN-VDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMV 350



 Score = 47.8 bits (112), Expect(3) = 2e-22
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGDGNAGEGATS 226
           K +  SLKAG   YD FSR+WTRSRN ++S  GEE   +  NG      G  N  EGAT 
Sbjct: 485 KRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEE-VTAEANGDKNGVPGGANGEEGATG 543

Query: 225 TASENLQGSTRGAAGVLGEKQD 160
                   +   AA   G+  D
Sbjct: 544 EVGMAATEAALEAAAGAGKLVD 565



 Score = 47.4 bits (111), Expect(3) = 2e-22
 Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVER+G +M   + V EK   I KIN+ ++S               SR L +  E+   R
Sbjct: 366 EVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLR 425

Query: 565 GRLKWQKVTR--TKLR*VKLKEPEI-ISQKSNQKDKMALSLAEMNGRN*AENFKNALE 401
             L+  +       +  +K +  E+  S+ S  KD  A+ LAEMN +N  ENFKNA E
Sbjct: 426 RELEVAQSRHDDVDMERIKKRLQELEASRDSKVKDAKAIRLAEMNRKNRVENFKNASE 483


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Citrus sinensis]
          Length = 643

 Score = 58.9 bits (141), Expect(3) = 4e-22
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR CM R  V++  PD+ Y+L++  TCK LN  W NE+SAA WQMA+V
Sbjct: 303 IYRLCMVRN-VDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMV 350



 Score = 47.8 bits (112), Expect(3) = 4e-22
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGDGNAGEGATS 226
           K +  SLKAG   YD FSR+WTRSRN ++S  GEE   +  NG      G  N  EGAT 
Sbjct: 485 KRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEE-VTAEANGDKNGVPGGANGEEGATG 543

Query: 225 TASENLQGSTRGAAGVLGEKQD 160
                   +   AA   G+  D
Sbjct: 544 EVGMAATEAALEAAAGAGKLVD 565



 Score = 46.2 bits (108), Expect(3) = 4e-22
 Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVER+  +M   + V EK   I KIN+ ++S               SR L +  E+   R
Sbjct: 366 EVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLR 425

Query: 565 GRLK--WQKVTRTKLR*VKLKEPEI-ISQKSNQKDKMALSLAEMNGRN*AENFKNALE 401
             L+    +     +  +K +  E+  S+ S  KD  A+ LAEMN +N  ENFKNA E
Sbjct: 426 RELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKAIRLAEMNRKNRVENFKNASE 483


>gb|KDO47969.1| hypothetical protein CISIN_1g006477mg [Citrus sinensis]
           gi|641828832|gb|KDO47970.1| hypothetical protein
           CISIN_1g006477mg [Citrus sinensis]
          Length = 643

 Score = 58.9 bits (141), Expect(3) = 6e-22
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR CM R  V++  PD+ Y+L++  TCK LN  W NE+SAA WQMA+V
Sbjct: 303 IYRLCMVRN-VDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMV 350



 Score = 47.8 bits (112), Expect(3) = 6e-22
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGDGNAGEGATS 226
           K +  SLKAG   YD FSR+WTRSRN ++S  GEE   +  NG      G  N  EGAT 
Sbjct: 485 KRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEE-VTAEANGDKNGVPGGANGEEGATG 543

Query: 225 TASENLQGSTRGAAGVLGEKQD 160
                   +   AA   G+  D
Sbjct: 544 EVGMAATEAALEAAAGAGKLVD 565



 Score = 45.8 bits (107), Expect(3) = 6e-22
 Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVER+  +M   + V EK   I KIN+ ++S               SR L +  E+   R
Sbjct: 366 EVERNSGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLR 425

Query: 565 GRLK--WQKVTRTKLR*VKLKEPEI-ISQKSNQKDKMALSLAEMNGRN*AENFKNALE 401
             L+    +     +  +K +  E+  S+ S  KD  A+ LAEMN +N  ENFKNA E
Sbjct: 426 RELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKAIRLAEMNRKNRVENFKNASE 483


>ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Sesamum
           indicum]
          Length = 627

 Score = 55.5 bits (132), Expect(3) = 7e-22
 Identities = 25/49 (51%), Positives = 35/49 (71%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR C+ R  V++ +PD+QY+L +  T K LN +W NE SAA WQMA++
Sbjct: 286 IYRLCVVRN-VDATDPDKQYKLDNKTTYKYLNVVWGNETSAARWQMAMI 333



 Score = 50.4 bits (119), Expect(3) = 7e-22
 Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVERSG  M   ++V EK   I K NS ++S+               R L +  E+   R
Sbjct: 349 EVERSGGHMPTKQEVLEKKEAIQKTNSFVYSAATVKQMLQEKKSATWRPLNVAAEKDRLR 408

Query: 565 GRLKWQK-------VTRTKLR*VKLKEPEIISQKSNQKDKMALSLAEMNGRN*AENFKNA 407
             L+  K       V R K R   L+E E  S++  +KD  A+ LAEMN RN  ENF+NA
Sbjct: 409 RALEVAKENEDEAEVERLKAR---LQELEA-SRQPQEKDSKAVKLAEMNRRNRVENFRNA 464

Query: 406 LE 401
            E
Sbjct: 465 SE 466



 Score = 46.2 bits (108), Expect(3) = 7e-22
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGDGNAGEGATS 226
           K +  SLKAG   YD FSR+WTRSRN +++N          NG A+  L   N G   ++
Sbjct: 468 KPVNTSLKAGEAGYDPFSRRWTRSRNYYVANSNGGEAAGETNGDASAALPGSNGGGRVSA 527

Query: 225 TASENLQGSTRGAAGVLGEKQD 160
            A      +   AA   G+  D
Sbjct: 528 EAGVAATAAALEAAAGAGKLVD 549


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
           gi|482569554|gb|EOA33742.1| hypothetical protein
           CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score = 57.0 bits (136), Expect(4) = 2e-21
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCLKRNY- 718
           IYR CM R  V++ +PD+ Y+L++  T K LN IW NE SAA WQMA++     L+  Y 
Sbjct: 308 IYRLCMVRN-VDATDPDKTYKLENKTTHKYLNVIWGNETSAARWQMAMISDGHPLEEEYR 366

Query: 717 -CCSRFERWNG 688
                 ER NG
Sbjct: 367 QWIREVERTNG 377



 Score = 48.1 bits (113), Expect(4) = 2e-21
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVER+  +M   + ++EK   I +INS ++S+               R + +  E+   R
Sbjct: 371 EVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVKQMLQEKKSASVRPMNVAAEKDRLR 430

Query: 565 GRLK--WQKVTRTKLR*VKLKEPEIISQKSNQK-DKMALSLAEMNGRN*AENFKNALESE 395
             L+    K     +  +K K  ++ + ++ +  DK AL LAEMN +N AENFKNA E +
Sbjct: 431 KELEIAQSKNDEAGVERIKTKIKQLDASRNKKGVDKKALKLAEMNKKNRAENFKNASEVK 490

Query: 394 S 392
           S
Sbjct: 491 S 491



 Score = 39.3 bits (90), Expect(4) = 2e-21
 Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = -3

Query: 396 KVIYASLK---AGYDQFSRKWTRSRNSF----MSN*GEENDVSYVNGTATMCLGDGNAGE 238
           K I ASLK   AGYD FSR+WTRS N +        G EN+ +      T  + D  AG 
Sbjct: 490 KSITASLKVGEAGYDPFSRRWTRSSNYYNGKNKGKEGAENEAAVAAAVETNGV-DAGAGV 548

Query: 237 GATSTASE 214
            AT  A E
Sbjct: 549 EATEAALE 556



 Score = 26.2 bits (56), Expect(4) = 2e-21
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 218 LRTYRGPQGVQLEFLVRSKI 159
           L+ Y GPQGVQ  F+ R ++
Sbjct: 592 LQKYGGPQGVQKAFMARKQV 611


>ref|XP_004493842.1| PREDICTED: protein RTF1 homolog [Cicer arietinum]
           gi|502110282|ref|XP_004493843.1| PREDICTED: protein RTF1
           homolog [Cicer arietinum]
          Length = 653

 Score = 55.8 bits (133), Expect(3) = 2e-21
 Identities = 26/49 (53%), Positives = 35/49 (71%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR CM +  V++ +PD+QY+L +  T K LN +W NE SAA WQMA+V
Sbjct: 311 IYRLCMVKN-VDASDPDRQYKLDNKTTYKYLNVVWGNETSAARWQMAMV 358



 Score = 54.7 bits (130), Expect(3) = 2e-21
 Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVERSG +ML    V EKN  I KINS ++S+               R L +  E+   +
Sbjct: 374 EVERSGGRMLMKLDVMEKNQAIQKINSFVYSAATVKQMIEEKKSNSRRPLNVAAEKDRLK 433

Query: 565 GRLKW--QKVTRTKLR*VKLKEPEI-ISQKSNQKDKMALSLAEMNGRN*AENFKNALE 401
            +L+    K    ++  +K +  E+  S+K+  KD  AL L+EMN +N  ENFKNA E
Sbjct: 434 RQLEIAESKKDAAEVEKIKTRLQELEASRKTQAKDAKALRLSEMNRKNRFENFKNASE 491



 Score = 40.4 bits (93), Expect(3) = 2e-21
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -3

Query: 375 KAGYDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGD-GNAGEGAT 229
           +AGYD FSR+WTRSRN + +   EE   +  N ++   +GD G+ G GAT
Sbjct: 503 EAGYDPFSRRWTRSRNYYNAKQAEE--AAAGNNSSGGAVGDRGSNGVGAT 550


>ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
           bretschneideri]
          Length = 657

 Score = 58.9 bits (141), Expect(3) = 2e-21
 Identities = 29/64 (45%), Positives = 41/64 (64%)
 Frame = -3

Query: 909 STGHAIYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCL 730
           S   AIYR CM R  V++ +PD+QY+L++  T K LN +W NE SAA WQMA++     L
Sbjct: 308 SKSGAIYRLCMVRN-VDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPL 366

Query: 729 KRNY 718
           +  +
Sbjct: 367 EEEF 370



 Score = 46.2 bits (108), Expect(3) = 2e-21
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVERSG ++   + V EK   I K NS ++S               SR L I  E+   R
Sbjct: 376 EVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDRLR 435

Query: 565 GRLKWQKVTR--TKLR*VKLKEPEIISQKSNQ-KDKMALSLAEMNGRN*AENFKNALE 401
             L+  K  +   ++  ++ +  ++ +++ +Q KD  A+ LAEMN +N  ENFKNA E
Sbjct: 436 RELEVAKSKQDDAEVERIQTRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASE 493



 Score = 45.4 bits (106), Expect(3) = 2e-21
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
 Frame = -3

Query: 375 KAGYDQFSRKWTRSRNSFMSN*GEEND-----------VSYVNGTATMCLGDGNAGEGAT 229
           +AGYD FSR+WTRSRN ++S  GE+ +           ++ +    T  +G   AG  AT
Sbjct: 505 EAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALADIESNGTAVVGAVRAGMAAT 564

Query: 228 STASENLQGS 199
           + A E   G+
Sbjct: 565 AAALEAAAGA 574


>ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Malus
           domestica]
          Length = 657

 Score = 58.9 bits (141), Expect(3) = 2e-21
 Identities = 29/64 (45%), Positives = 41/64 (64%)
 Frame = -3

Query: 909 STGHAIYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCL 730
           S   AIYR CM R  V++ +PD+QY+L++  T K LN +W NE SAA WQMA++     L
Sbjct: 308 SKSGAIYRLCMVRN-VDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPL 366

Query: 729 KRNY 718
           +  +
Sbjct: 367 EEEF 370



 Score = 46.2 bits (108), Expect(3) = 2e-21
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVERSG ++   + V EK   I K NS ++S               SR L I  E+   R
Sbjct: 376 EVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDRLR 435

Query: 565 GRLKWQKVTR--TKLR*VKLKEPEIISQKSNQ-KDKMALSLAEMNGRN*AENFKNALE 401
             L+  K  +   ++  ++ +  ++ +++ +Q KD  A+ LAEMN +N  ENFKNA E
Sbjct: 436 RELEVAKSKQDDAEVERIETRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASE 493



 Score = 45.4 bits (106), Expect(3) = 2e-21
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
 Frame = -3

Query: 375 KAGYDQFSRKWTRSRNSFMSN*GEEND-----------VSYVNGTATMCLGDGNAGEGAT 229
           +AGYD FSR+WTRSRN ++S  GE+ +           ++ +    T  +G   AG  AT
Sbjct: 505 EAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALADIESNGTAVVGAVRAGMAAT 564

Query: 228 STASENLQGS 199
           + A E   G+
Sbjct: 565 AAALEAAAGA 574


>ref|XP_006853567.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
           [Amborella trichopoda] gi|548857220|gb|ERN15034.1|
           hypothetical protein AMTR_s00032p00242160 [Amborella
           trichopoda]
          Length = 624

 Score = 62.0 bits (149), Expect(3) = 3e-21
 Identities = 28/63 (44%), Positives = 43/63 (68%)
 Frame = -3

Query: 906 TGHAIYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCLK 727
           +G +IYR CM R  V++ +PD+QY+ ++  T K LNC+W +EASAA WQMA +     L+
Sbjct: 296 SGQSIYRLCMVRN-VDASDPDRQYKFENRTTHKYLNCVWGSEASAARWQMARISDSAPLE 354

Query: 726 RNY 718
           + +
Sbjct: 355 KEF 357



 Score = 51.2 bits (121), Expect(3) = 3e-21
 Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLF----------------SSRSLQITGEEGWF 569
           EVER G +M   + V +K   I +++S+                  S+R   I  E+   
Sbjct: 363 EVERGGGRMPTKQDVIDKGEAIQRLSSSFVYSAATVKQMLQEKKSASTRPSNIAAEKDRL 422

Query: 568 R-------GRLKWQKVTRTKLR*VKLKEPEIISQKSNQKDKMALSLAEMNGRN*AENFKN 410
           R        RL   +  R + R   L+E E +SQ+S +KD  A+ LAEMN RN AENFKN
Sbjct: 423 RKEMELAESRLDHAEAERVRAR---LQELENLSQQSKKKDAKAVMLAEMNRRNRAENFKN 479

Query: 409 ALE 401
           A E
Sbjct: 480 ASE 482



 Score = 37.0 bits (84), Expect(3) = 3e-21
 Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMS 316
           K +  SLKAG   YD FSR+WTRSRN ++S
Sbjct: 484 KPVNTSLKAGEAGYDPFSRRWTRSRNYYVS 513


>ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
           bretschneideri]
          Length = 657

 Score = 58.9 bits (141), Expect(3) = 4e-21
 Identities = 29/64 (45%), Positives = 41/64 (64%)
 Frame = -3

Query: 909 STGHAIYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCL 730
           S   AIYR CM R  V++ +PD+QY+L++  T K LN +W NE SAA WQMA++     L
Sbjct: 308 SKSGAIYRLCMVRN-VDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPL 366

Query: 729 KRNY 718
           +  +
Sbjct: 367 EEEF 370



 Score = 46.2 bits (108), Expect(3) = 4e-21
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFS---------------SRSLQITGEEGWFR 566
           EVERSG ++   + V EK   I K NS ++S               SR L I  E+   R
Sbjct: 376 EVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDRLR 435

Query: 565 GRLKWQKVTR--TKLR*VKLKEPEIISQKSNQ-KDKMALSLAEMNGRN*AENFKNALE 401
             L+  K  +   ++  ++ +  ++ +++ +Q KD  A+ LAEMN +N  ENFKNA E
Sbjct: 436 RELEVAKSKQDDAEVERIQTRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASE 493



 Score = 44.7 bits (104), Expect(3) = 4e-21
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
 Frame = -3

Query: 375 KAGYDQFSRKWTRSRNSFMSN*GEENDVSY-----------VNGTATMCLGDGNAGEGAT 229
           +AGYD FSR+WTRSRN ++S  GE+ + +            +    T  +G   AG  AT
Sbjct: 505 EAGYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALVDIESNGTAVVGAVRAGMAAT 564

Query: 228 STASENLQGS 199
           + A E   G+
Sbjct: 565 AAALEAAAGA 574


>ref|XP_010418054.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Camelina
           sativa] gi|727507935|ref|XP_010430094.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Camelina
           sativa]
          Length = 645

 Score = 57.4 bits (137), Expect(4) = 7e-21
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCLKRNY- 718
           IYR CM R  V++ +PD+ Y+L++  T K LN IW NE SAA WQMA+V     L+  Y 
Sbjct: 309 IYRLCMVRN-VDATDPDKTYKLENKSTHKYLNVIWGNETSAARWQMAMVSDGHPLEEEYR 367

Query: 717 -CCSRFERWNG 688
                 ER NG
Sbjct: 368 QWIREVERTNG 378



 Score = 47.4 bits (111), Expect(4) = 7e-21
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVER+  +M   + + EK   I +INS ++S+               R + +  E+   R
Sbjct: 372 EVERTNGRMPTKQDIAEKKEAIQRINSFVYSAETVKQMLQEKKSASIRPMNVAAEKDRLR 431

Query: 565 GRLKW--QKVTRTKLR*VKLKEPEI-ISQKSNQKDKMALSLAEMNGRN*AENFKNALESE 395
             L     K     +  +K K  ++  S+   + DK AL LAEMN +N AENFKNA E +
Sbjct: 432 KELDIAESKNDEAGVERIKTKIKQLDASRNKKEVDKKALKLAEMNKKNRAENFKNASEVK 491

Query: 394 S 392
           S
Sbjct: 492 S 492



 Score = 37.7 bits (86), Expect(4) = 7e-21
 Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSF----MSN*GEENDVSYVNGTATMCLGDGNAGE 238
           K I ASLKAG   YD FSR+WTRS N +        G EN+ +      T    D  AG 
Sbjct: 491 KSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGAENEAAVATAAETNG-ADAGAGA 549

Query: 237 GATSTASE 214
            A   A E
Sbjct: 550 EAIEAALE 557



 Score = 25.8 bits (55), Expect(4) = 7e-21
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 218 LRTYRGPQGVQLEFLVRSKI 159
           L+ Y GPQGVQ  F+ R ++
Sbjct: 593 LQKYGGPQGVQKAFMARKQL 612


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated RTF1-like protein [Medicago
           truncatula]
          Length = 624

 Score = 53.1 bits (126), Expect(3) = 1e-20
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR CM +  V++ +PD+ Y+L +  T K LN +W NE SAA WQMA+V
Sbjct: 288 IYRLCMVKN-VDASDPDRLYKLDNKTTYKYLNVVWGNETSAARWQMAMV 335



 Score = 49.7 bits (117), Expect(3) = 1e-20
 Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 20/118 (16%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVERSG +ML+   V EK   + KIN+ ++S+               R L +  E+   +
Sbjct: 351 EVERSGGRMLKRLDVVEKKQAMLKINNFVYSAATVKQMLEEKKSISRRPLNVAAEKDRLK 410

Query: 565 GRLKWQKVTRT-----KLR*VKLKEPEIISQKSNQKDKMALSLAEMNGRN*AENFKNA 407
             L+  +         K++  KL+E E  S+KS +KD  AL L+EMN +N  ENFKNA
Sbjct: 411 RELEIAESKNDAAGVEKIQ-TKLQELEE-SRKSREKDAKALRLSEMNRKNRVENFKNA 466



 Score = 45.4 bits (106), Expect(3) = 1e-20
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = -3

Query: 375 KAGYDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGDG-----NAGEGATSTASEN 211
           +AGYD FSR+WTRSRN + S   EE      N T+   +GDG      AG  AT+ A E 
Sbjct: 480 EAGYDPFSRRWTRSRNYYNSKPAEEATAG--NNTSGGAVGDGGSNGIGAGMAATTEALEA 537

Query: 210 LQGS 199
             G+
Sbjct: 538 AAGA 541


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
           gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
           [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score = 53.1 bits (126), Expect(4) = 1e-20
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCLKRNY- 718
           IYR C  +  V++ +PD+ Y+L++  T K LN +W NE SAA WQMA++     L+  Y 
Sbjct: 307 IYRLCWVKN-VDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAMISDGHPLEEEYR 365

Query: 717 -CCSRFERWNG 688
                 ER NG
Sbjct: 366 QWIREVERTNG 376



 Score = 48.1 bits (113), Expect(4) = 1e-20
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVER+  +M   + ++EK   I +INS ++S+               R + +  E+   R
Sbjct: 370 EVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQMLQEKKSASVRPMNVAAEKDRLR 429

Query: 565 GRLK--WQKVTRTKLR*VKLKEPEIISQKSNQK-DKMALSLAEMNGRN*AENFKNALESE 395
             L+    K     +  +K K  ++ + ++ +  DK AL LAEMN +N AENFKNA E +
Sbjct: 430 KELEIAQSKNDEAGVERIKTKIKQLDASRNKKGVDKKALKLAEMNKKNRAENFKNASEVK 489

Query: 394 S 392
           S
Sbjct: 490 S 490



 Score = 40.0 bits (92), Expect(4) = 1e-20
 Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSF----MSN*GEENDVSYVNGTATMCLGDGNAGE 238
           K I ASLKAG   YD FSR+WTRS N +        GEEN+ +      T    D  AG 
Sbjct: 489 KSISASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENETAVAAAVETNG-ADVGAGV 547

Query: 237 GATSTASE 214
            AT  A E
Sbjct: 548 EATEAALE 555



 Score = 26.2 bits (56), Expect(4) = 1e-20
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 218 LRTYRGPQGVQLEFLVRSKI 159
           L+ Y GPQGVQ  F+ R ++
Sbjct: 591 LQKYGGPQGVQKAFMARKQV 610


>emb|CDO99584.1| unnamed protein product [Coffea canephora]
          Length = 631

 Score = 52.0 bits (123), Expect(3) = 1e-20
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALVQTVCCLKRNY 718
           IYR C+ R  V+  +PD+ Y+L +  T K LN +W NE SAA WQMA++      K  Y
Sbjct: 294 IYRLCVVRN-VDGSDPDRLYKLDNKTTYKYLNVVWGNENSAARWQMAMISDSPPAKEEY 351



 Score = 51.6 bits (122), Expect(3) = 1e-20
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 18/116 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVERSG +M    +V EK   I K NS ++S+               R L +  E+   R
Sbjct: 357 EVERSGGRMPSKLEVLEKKEAIQKTNSFVYSAETVKQMLQEKKSATWRPLNVAAEKDRLR 416

Query: 565 GRLKWQKVTRTKLR*VKLK---EPEIISQKSNQKDKMALSLAEMNGRN*AENFKNA 407
             ++  K+   +L   ++K   +    S+++++ DK A+ LAEMN +N  ENFKNA
Sbjct: 417 TEMEVAKINNDELEVERIKARLQELEASRQAHEMDKKAIRLAEMNRKNRVENFKNA 472



 Score = 44.3 bits (103), Expect(3) = 1e-20
 Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN---------*GEENDVSYVNGTATMCLGD 253
           K + ASLKAG   YD FSR+WTRSRN ++ N          GE    S VN      +  
Sbjct: 476 KPVNASLKAGEAGYDPFSRRWTRSRNYYVKNPIDGEATAADGEATAASAVNNRNGTAVVS 535

Query: 252 GNAGEGATSTASE 214
              G+ AT+TA +
Sbjct: 536 TEMGKAATATADD 548


>ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha
           curcas] gi|643703874|gb|KDP20938.1| hypothetical protein
           JCGZ_21409 [Jatropha curcas]
          Length = 658

 Score = 55.5 bits (132), Expect(3) = 2e-20
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = -3

Query: 894 IYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           IYR C+ R  V++ +PD+ Y+L++  T K LN IW NE+SAA WQMA+V
Sbjct: 316 IYRLCLVRN-VDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMV 363



 Score = 47.0 bits (110), Expect(3) = 2e-20
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 18/118 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           EVERSG +M   + + EK   I K N+ ++S+               R L +  E+   R
Sbjct: 379 EVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLR 438

Query: 565 GRLKWQKVTR--TKLR*VKLKEPEI-ISQKSNQKDKMALSLAEMNGRN*AENFKNALE 401
             L+  ++ +   ++  ++ +  E+  S+++ +KD  A+ LAEMN +N AENF+NA E
Sbjct: 439 RELEVAQMKQDDAEVERIRARIQELEASRQAQEKDAKAIRLAEMNRKNRAENFRNASE 496



 Score = 45.1 bits (105), Expect(3) = 2e-20
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYVNGTATMCLGDGNAGEGATS 226
           K +  SLKAG   YD FSR+WTRSRN ++S  G  +  +  N   T  +   N    AT 
Sbjct: 498 KPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGADVAAEANNNGTAAVAHSNG--AATG 555

Query: 225 TASENLQGSTRGA 187
           T +E    +T  A
Sbjct: 556 TLAEAGMAATAAA 568


>ref|XP_009399689.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Musa
           acuminata subsp. malaccensis]
           gi|694997498|ref|XP_009399697.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Musa
           acuminata subsp. malaccensis]
           gi|694997500|ref|XP_009399705.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Musa
           acuminata subsp. malaccensis]
           gi|694997502|ref|XP_009399712.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Musa
           acuminata subsp. malaccensis]
          Length = 666

 Score = 54.3 bits (129), Expect(3) = 2e-20
 Identities = 24/53 (45%), Positives = 37/53 (69%)
 Frame = -3

Query: 906 TGHAIYRFCMARTLVNSINPDQQYRLQHMMTCKRLNCIWVNEASAAWWQMALV 748
           +G   Y+ C+ R  V++ +P + Y+L+H  T K LNCIW +++SAA WQMA+V
Sbjct: 317 SGKPKYKLCLVRN-VDATDPGKHYKLEHYTTYKWLNCIWGSDSSAARWQMAMV 368



 Score = 52.0 bits (123), Expect(3) = 2e-20
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 19/119 (15%)
 Frame = -2

Query: 700 EVERSGVQMLRLKKVNEKNGGIWKINSNLFSS---------------RSLQITGEEGWFR 566
           +VE  G +M   +++ +K   I KIN+ ++S+               R + I  E+   R
Sbjct: 384 QVENDGGRMPTHQEILDKKEEIQKINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDRLR 443

Query: 565 GRLKWQKVTRTKLR*----VKLKEPEIISQKSNQKDKMALSLAEMNGRN*AENFKNALE 401
             ++  +  R +        +LKE E IS+K+ Q D+ A+ LAEMN RN AENFKNA E
Sbjct: 444 KEMEVAQSRRDEAEVERIRARLKELEDISRKTKQVDEKAVRLAEMNRRNRAENFKNASE 502



 Score = 40.8 bits (94), Expect(3) = 2e-20
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
 Frame = -3

Query: 396 KVIYASLKAG---YDQFSRKWTRSRNSFMSN*GEENDVSYVN-----------GTATMCL 259
           K +  SLKAG   YD FSR+WTRS N ++S  G + + +  N               + +
Sbjct: 504 KPVNTSLKAGEAGYDPFSRRWTRSMNYYVSKPGGDGNAAAANDDHEKPVVAGVANGVVTI 563

Query: 258 GDGNAGEGATSTASENLQGS 199
               AGE AT+ A +   G+
Sbjct: 564 NGVEAGEAATAAALQAAAGA 583