BLASTX nr result
ID: Anemarrhena21_contig00030383
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00030383
(431 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEX94476.1| RNA polymerase beta (chloroplast) [Aphyllanthes m... 62 1e-07
gb|AEX94485.1| RNA polymerase beta (chloroplast) [Phormium tenax] 61 3e-07
gb|AEX94461.1| RNA polymerase beta (chloroplast) [Agapanthus afr... 61 3e-07
gb|AEX94484.1| RNA polymerase beta (chloroplast) [Doryanthes pal... 60 6e-07
ref|YP_009059510.1| RNA polymerase beta subunit [Iris gatesii] g... 60 7e-07
ref|YP_009033876.1| RNA polymerase beta' subunit (plastid) [Dios... 59 1e-06
emb|CAB56764.1| RNA polymerase [Allium cepa] 59 2e-06
ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281... 59 2e-06
gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia] 59 2e-06
gb|AEX94509.1| RNA polymerase beta (chloroplast) [Xeronema calli... 59 2e-06
gb|AEX94491.1| RNA polymerase beta (chloroplast) [Iris tenax] 59 2e-06
gb|AEX94475.1| RNA polymerase beta (chloroplast) [Scadoxus cinna... 59 2e-06
gb|AEX94473.1| RNA polymerase beta (chloroplast) [Crinum asiaticum] 59 2e-06
gb|AEX94462.1| RNA polymerase beta (chloroplast) [Anemarrhena as... 59 2e-06
ref|YP_009108750.1| RNA polymerase beta' subunit [Oncinotis tenu... 58 2e-06
gb|AIW05426.1| RNA polymerase beta' subunit [Neobracea bahamensis] 58 2e-06
gb|AEX94463.1| RNA polymerase beta (chloroplast) [Camassia scill... 58 2e-06
ref|YP_009141854.1| DNA-directed RNA polymerase beta' chain (chl... 58 3e-06
ref|YP_009130118.1| RNA polymerase beta (chloroplast) [Carludovi... 58 3e-06
ref|YP_009144970.1| RNA polymerase beta' subunit (chloroplast) [... 57 4e-06
>gb|AEX94476.1| RNA polymerase beta (chloroplast) [Aphyllanthes monspeliensis]
Length = 683
Score = 62.0 bits (149), Expect = 1e-07
Identities = 41/88 (46%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNPRGICANRYNP-YNC--------GN 565
Query: 284 CQNTTVDNNNYNYMKE*HMCLICFKIGA 201
QN TVDNNNY Y KE + C +GA
Sbjct: 566 YQNKTVDNNNYKYTKEPYFCSSYDALGA 593
>gb|AEX94485.1| RNA polymerase beta (chloroplast) [Phormium tenax]
Length = 685
Score = 61.2 bits (147), Expect = 3e-07
Identities = 42/93 (45%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R +T +N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNT------------YN 562
Query: 284 C---QNTTVDNNNYNYMKE*HMCLICFKIGACG 195
C QN TVDNNNY Y KE C C A G
Sbjct: 563 CGDYQNKTVDNNNYKYTKEKEPC-FCSSYDALG 594
>gb|AEX94461.1| RNA polymerase beta (chloroplast) [Agapanthus africanus]
Length = 685
Score = 60.8 bits (146), Expect = 3e-07
Identities = 39/76 (51%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNP-YNC--------GN 565
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY YMKE
Sbjct: 566 YQNKTVDNNNYKYMKE 581
>gb|AEX94484.1| RNA polymerase beta (chloroplast) [Doryanthes palmeri]
Length = 685
Score = 60.1 bits (144), Expect = 6e-07
Identities = 38/76 (50%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C+ N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIENRRGICANRYNP-YNCR--------N 565
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 566 YQNKTVDNNNYKYTKE 581
>ref|YP_009059510.1| RNA polymerase beta subunit [Iris gatesii]
gi|685161355|gb|AIN78999.1| RNA polymerase beta subunit
[Iris gatesii]
Length = 684
Score = 59.7 bits (143), Expect = 7e-07
Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRQGICANRYNP-YNCR--------N 562
Query: 284 CQNTTVDNNNYNYMKE 237
QN T+DNNNY Y KE
Sbjct: 563 YQNKTIDNNNYKYTKE 578
>ref|YP_009033876.1| RNA polymerase beta' subunit (plastid) [Dioscorea rotundata]
gi|631793222|gb|AHZ18122.1| RNA polymerase beta' subunit
[Dioscorea rotundata]
Length = 685
Score = 58.9 bits (141), Expect = 1e-06
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R +T Y C+ N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNT-YNCR--------N 565
Query: 284 CQNTTVDNNNYNYMK 240
QN V+NN YNYMK
Sbjct: 566 SQNKIVNNNKYNYMK 580
>emb|CAB56764.1| RNA polymerase [Allium cepa]
Length = 157
Score = 58.5 bits (140), Expect = 2e-06
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 17 LMFSHMNLLSPAIGDPISVPSQDMLIGLYVLTMGNRRGICENRYNP-YNCA--------N 67
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 68 YQNKTVDNNNYEYTKE 83
>ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281371763|gb|ADA63690.1|
RNA polymerase beta [Typha latifolia]
Length = 686
Score = 58.5 bits (140), Expect = 2e-06
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 516 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNP-YNC--------GN 566
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 567 YQNKTVDNNNYRYTKE 582
>gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]
Length = 684
Score = 58.5 bits (140), Expect = 2e-06
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 516 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNP-YNC--------GN 566
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 567 YQNKTVDNNNYRYTKE 582
>gb|AEX94509.1| RNA polymerase beta (chloroplast) [Xeronema callistemon]
Length = 685
Score = 58.5 bits (140), Expect = 2e-06
Identities = 41/90 (45%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C+ N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNP-YNCR--------N 565
Query: 284 CQNTTVDNNNYNYM--KE*HMCLICFKIGA 201
QN TVDNNNY Y KE + C +GA
Sbjct: 566 YQNKTVDNNNYKYTKGKEPYFCSSYDALGA 595
>gb|AEX94491.1| RNA polymerase beta (chloroplast) [Iris tenax]
Length = 685
Score = 58.5 bits (140), Expect = 2e-06
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS A+GDP+S P QDMLI L C +R + Y C+ N
Sbjct: 515 LMFSHMNLLSPAMGDPISVPTQDMLIGLYVLTIGNRQGICANRYNP-YNCR--------N 565
Query: 284 CQNTTVDNNNYNYMKE 237
QN T+DNNNY Y KE
Sbjct: 566 YQNKTIDNNNYKYTKE 581
>gb|AEX94475.1| RNA polymerase beta (chloroplast) [Scadoxus cinnabarinus]
Length = 685
Score = 58.5 bits (140), Expect = 2e-06
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNRRGICENRYNP-YNC--------GN 565
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 566 YQNKTVDNNNYKYTKE 581
>gb|AEX94473.1| RNA polymerase beta (chloroplast) [Crinum asiaticum]
Length = 685
Score = 58.5 bits (140), Expect = 2e-06
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNQRGICENRYNP-YNC--------GN 565
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 566 YQNKTVDNNNYKYTKE 581
>gb|AEX94462.1| RNA polymerase beta (chloroplast) [Anemarrhena asphodeloides]
Length = 685
Score = 58.5 bits (140), Expect = 2e-06
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNP-YNC--------GN 565
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 566 YQNKTVDNNNYKYTKE 581
>ref|YP_009108750.1| RNA polymerase beta' subunit [Oncinotis tenuiloba]
gi|702075715|gb|AIW05596.1| RNA polymerase beta' subunit
[Oncinotis tenuiloba]
Length = 687
Score = 58.2 bits (139), Expect = 2e-06
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDML+ L C +R + G N
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICVNRYNPGN---------RGN 569
Query: 284 CQNTTVDNNNYNYMKE*HMCLICFKIGA 201
QN DNNNY+YMKE C IGA
Sbjct: 570 YQNQRSDNNNYDYMKEPFFCNSYDAIGA 597
>gb|AIW05426.1| RNA polymerase beta' subunit [Neobracea bahamensis]
Length = 679
Score = 58.2 bits (139), Expect = 2e-06
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDML+ L C +R + G N
Sbjct: 511 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICVNRYNPGN---------RGN 561
Query: 284 CQNTTVDNNNYNYMKE*HMCLICFKIGA 201
QN DNNNY+YMKE C IGA
Sbjct: 562 YQNQRSDNNNYDYMKEPFFCNSYDAIGA 589
>gb|AEX94463.1| RNA polymerase beta (chloroplast) [Camassia scilloides]
Length = 685
Score = 58.2 bits (139), Expect = 2e-06
Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + Y C+ N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNP-YNCE--------N 565
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y K+
Sbjct: 566 YQNKTVDNNNYKYTKK 581
>ref|YP_009141854.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Xerophyllum
tenax] gi|705244213|gb|AIW56408.1| DNA-directed RNA
polymerase beta' chain (chloroplast) [Xerophyllum tenax]
Length = 686
Score = 57.8 bits (138), Expect = 3e-06
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + L+N
Sbjct: 516 LMFSHMNLLSPAIGDPISVPTQDMLIGLHVLTIGNRRGICANRYN------------LYN 563
Query: 284 C---QNTTVDNNNYNYMKE 237
C QN T+DNNNY Y KE
Sbjct: 564 CGNYQNKTLDNNNYKYTKE 582
>ref|YP_009130118.1| RNA polymerase beta (chloroplast) [Carludovica palmata]
gi|768803787|gb|AJV88587.1| RNA polymerase beta
(chloroplast) [Carludovica palmata]
Length = 682
Score = 57.8 bits (138), Expect = 3e-06
Identities = 37/76 (48%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + C+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTLGNRRGICANRYNPSN-CR--------N 562
Query: 284 CQNTTVDNNNYNYMKE 237
QN TVDNNNY Y KE
Sbjct: 563 YQNQTVDNNNYKYTKE 578
>ref|YP_009144970.1| RNA polymerase beta' subunit (chloroplast) [Dieffenbachia seguine]
gi|827504841|gb|AKJ83427.1| RNA polymerase beta' subunit
(chloroplast) [Dieffenbachia seguine]
Length = 693
Score = 57.4 bits (137), Expect = 4e-06
Identities = 40/90 (44%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Frame = -1
Query: 431 VIFSHMNLLSLAIGDPVSGPIQDMLIRL-----------C*DRESTGYLCK*V*FI*LWN 285
++FSHMNLLS AIGDP+S P QDMLI L C +R + CK N
Sbjct: 521 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNLSN-CK--------N 571
Query: 284 CQNTTVDNNNYNYMKE*HMCLICFKIGACG 195
QN TV NNNY Y KE C A G
Sbjct: 572 DQNQTVGNNNYQYTKEKEEPYFCSSYDALG 601