BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00029021
         (2401 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008783046.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   991   0.0  
ref|XP_010929072.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   981   0.0  
ref|XP_010943346.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   977   0.0  
ref|XP_010943345.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   977   0.0  
ref|XP_008788965.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   971   0.0  
ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   961   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   909   0.0  
ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   905   0.0  
ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   905   0.0  
ref|XP_009394557.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   902   0.0  
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   891   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...   891   0.0  
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   890   0.0  
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   890   0.0  
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   890   0.0  
ref|XP_006844103.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   884   0.0  
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   882   0.0  
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   878   0.0  
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]         877   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   876   0.0  

>ref|XP_008783046.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Phoenix dactylifera]
          Length = 1038

 Score =  991 bits (2561), Expect = 0.0
 Identities = 499/725 (68%), Positives = 567/725 (78%), Gaps = 22/725 (3%)
 Frame = -2

Query: 2109 PNIMLRNIVRKASISSQNLTFSGH-LCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFK 1933
            P  M RN+ RKAS SS+ L F+G    + ++  ISSFLG SQ+S  C ++ ILDL   F 
Sbjct: 35   PKEMWRNLARKASSSSRYLDFAGRPSSVPAIPSISSFLGSSQDSICCERSRILDLGTPFS 94

Query: 1932 YRFSELAMLQTRELLPLVIDAKYPIASPSVSLTDSKGFATAANEICSTDIXXXXXXXXXX 1753
            +R S   +    +  P +    + I   S  L DS+ FA+ A  + STD+          
Sbjct: 95   HRSSNTGVGHNGDSSPFIRCPNFSIGRISGRLGDSRFFASVAEAVSSTDVDEDTSSIEEI 154

Query: 1752 XXSKQ-------RENS------EQIHLK-------ITREMGRGKYQTLRRRQVKAETEAW 1633
                +       RE S      E++  K       +   MG GKY  LRRRQ++ ETEAW
Sbjct: 155  QGMLEEMSKIDVREGSKIGGNLEEVRPKQQLGQPRMVCGMGSGKYAILRRRQIRIETEAW 214

Query: 1632 DEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPY 1453
            ++AAKEYKE L DMCE KLAPNLPY+K+LFLGWFEPLRD+IAAEQE+C     R  +GPY
Sbjct: 215  EQAAKEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDQIAAEQEQCRDPRTRVSHGPY 274

Query: 1452 FGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR- 1276
            F QLPA+MMAVITMHKL SL+MTG G GG+ VVQAAC IGEAIE+E RIHRFLEKT K+ 
Sbjct: 275  FYQLPADMMAVITMHKLMSLLMTGNGDGGIRVVQAACQIGEAIEHEVRIHRFLEKTRKKT 334

Query: 1275 NRDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGS 1096
            ++DKK E  EG T+ KEQ  LRKKVT LMKKQK+HQVR IVKGQDDSKPWGQDA AKVGS
Sbjct: 335  DKDKKNEDVEGATLTKEQEFLRKKVTNLMKKQKVHQVRKIVKGQDDSKPWGQDAQAKVGS 394

Query: 1095 RLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQG 916
            RLIE+L+ETAYIQPPV QSA+GPPD+RPAFRH LRTV KE QK  RRYG IECDPLVRQG
Sbjct: 395  RLIELLMETAYIQPPVSQSADGPPDIRPAFRHSLRTVTKEQQKHSRRYGVIECDPLVRQG 454

Query: 915  LHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQP 736
            L RTA HMVIPYMPMLVPPVNW GY+KG HL LPSYIMR HG+RQQR+A+RRAP K++Q 
Sbjct: 455  LDRTARHMVIPYMPMLVPPVNWTGYEKGGHLFLPSYIMRTHGARQQREAVRRAPRKEMQA 514

Query: 735  IFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXX 556
            +FEAL+TLG+TKWRVN +VLS+VDRIWSSGG LADLVDR+D+PLPEKPDTED AEIR   
Sbjct: 515  VFEALDTLGSTKWRVNKRVLSVVDRIWSSGGRLADLVDRDDIPLPEKPDTEDGAEIRKWK 574

Query: 555  XXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGS 376
                   KENSE+HSQRCDVELKL VARKM+DEEGFYYPHNLDFRGRAYP+HPYLNHLGS
Sbjct: 575  WKVKSVKKENSEKHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 634

Query: 375  DLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADR 196
            DLCRGILEFA+GRPLGKSGL WLKIHLANLYAGGVDKLSYDGR+AF ENH++DIFDSADR
Sbjct: 635  DLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRVAFTENHLDDIFDSADR 694

Query: 195  PLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRD 16
            PLEG+ WWLGAEDPFQCLA CINL+EA+RSSS E TISH+PVHQDGSCNGLQHYAALGRD
Sbjct: 695  PLEGRRWWLGAEDPFQCLAVCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRD 754

Query: 15   KLGAI 1
            KLGAI
Sbjct: 755  KLGAI 759


>ref|XP_010929072.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Elaeis guineensis]
          Length = 1038

 Score =  981 bits (2537), Expect = 0.0
 Identities = 493/725 (68%), Positives = 564/725 (77%), Gaps = 22/725 (3%)
 Frame = -2

Query: 2109 PNIMLRNIVRKASISSQNLTFSGH-LCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFK 1933
            P  M RN+  KAS SS+ L F+G    + ++  ISSF+G +Q+S  C ++ ILDL   F 
Sbjct: 35   PKEMWRNLATKASSSSRYLGFAGRPSSVPAIPSISSFIGSAQDSISCERSRILDLTAPFS 94

Query: 1932 YRFSELAMLQTRELLPLVIDAKYPIASPSVSLTDSKGFATAANEICSTDIXXXXXXXXXX 1753
            +R S +      +LLP +  +   I   S  L DS+ FA+ A  + STD+          
Sbjct: 95   HRSSNMGFCHNGDLLPFIRRSNSSIWRISGHLGDSRFFASVAEAVASTDVDEDASSIEEI 154

Query: 1752 XXSKQ-------RENS------EQIHLKITRE-------MGRGKYQTLRRRQVKAETEAW 1633
                +       RE S      E++  K+  E       MG GKY  LRRRQ++ ETEAW
Sbjct: 155  QGMLEEMSKIDAREGSKIGGNLEEVRPKVPLEKPRMVPGMGSGKYAILRRRQIRIETEAW 214

Query: 1632 DEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPY 1453
            ++AAKEYKE L DMCE KLAPNLPY+K+LFLGWFEPLRD+IAAEQE+C     R  YG Y
Sbjct: 215  EQAAKEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDQIAAEQEKCGDPGNRLSYGRY 274

Query: 1452 FGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR- 1276
            F QLPA+MMAVITMHKL SL+MTG G GG+ VVQAAC IGEAIE+E RIHRFLEKT K+ 
Sbjct: 275  FNQLPADMMAVITMHKLMSLLMTGSGYGGIRVVQAACQIGEAIEHEVRIHRFLEKTRKKA 334

Query: 1275 NRDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGS 1096
            ++DKK E  EG T+ KEQ  LRKKVT LMKKQKL QVR IV+GQDDSKPWGQD  AKVGS
Sbjct: 335  DKDKKNEDVEGATLAKEQEFLRKKVTNLMKKQKLRQVRKIVRGQDDSKPWGQDFQAKVGS 394

Query: 1095 RLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQG 916
            RLIE+L+ETAYIQPPV QSA+GPPD+RPAFRH LRTV KE QK  RRYG IECDPLVRQG
Sbjct: 395  RLIELLMETAYIQPPVSQSADGPPDIRPAFRHSLRTVTKEQQKHSRRYGVIECDPLVRQG 454

Query: 915  LHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQP 736
            L RTA HMVIPYMPMLVPPV+W GYDKG HL LPSYIMRIHG+RQQR+A++RAP  Q+Q 
Sbjct: 455  LDRTARHMVIPYMPMLVPPVHWTGYDKGGHLFLPSYIMRIHGARQQREAVKRAPRMQMQA 514

Query: 735  IFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXX 556
            +FEAL+TLG TKWR+N +VLS+VDR+WS GG LADLVDR+D+PLPEKPDTED+A IR   
Sbjct: 515  VFEALDTLGTTKWRINKRVLSVVDRMWSGGGRLADLVDRDDIPLPEKPDTEDEATIRKWK 574

Query: 555  XXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGS 376
                   KENSERHSQRCDVELKL VARKM+DEEGFYYPHNLDFRGRAYP+HPYLNHLGS
Sbjct: 575  WKVKSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 634

Query: 375  DLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADR 196
            DLCRGILEFA+GRPLGKSGL WLKIHLANLYAGGVDKLSYDGR+AF ENH+++IFDSADR
Sbjct: 635  DLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRVAFTENHLDEIFDSADR 694

Query: 195  PLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRD 16
            PLEG+ WWLGAEDPFQCLA CINL+EA+RSSS E TISH+PVHQDGSCNGLQHYAALGRD
Sbjct: 695  PLEGRRWWLGAEDPFQCLAVCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRD 754

Query: 15   KLGAI 1
            KLGAI
Sbjct: 755  KLGAI 759


>ref|XP_010943346.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial isoform X2 [Elaeis
            guineensis]
          Length = 1036

 Score =  977 bits (2526), Expect = 0.0
 Identities = 492/725 (67%), Positives = 562/725 (77%), Gaps = 21/725 (2%)
 Frame = -2

Query: 2112 KPNIMLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFK 1933
            K + M R   + AS SS+NL FS    L++LR ISSFLGF+Q+S    +N ILDL+  F 
Sbjct: 33   KSSDMWRIFAQTASNSSKNLRFSAGRSLSALRPISSFLGFTQDSFLWEKNRILDLRPPFN 92

Query: 1932 YRFSELAMLQTRELLPLVIDAKYPIASPSVSLTDSKGFATAANEICSTDIXXXXXXXXXX 1753
             RF ++      EL P V  +  PI   S  L +S+GFA  A  + STD+          
Sbjct: 93   SRFCDIGPHHNGELWPSVGYSNCPIGKLSGFLANSRGFADVAEAVASTDLDEEASSIEEI 152

Query: 1752 XXS-------------KQRENSEQIHLKITRE-------MGRGKYQTLRRRQVKAETEAW 1633
                            K  + SE++  K  RE       MG  KY  LR+RQ+K ETEAW
Sbjct: 153  QSLLEETSTVEVAEDWKLSDRSEKLPQKAQREEPKKVSGMGAKKYAKLRQRQIKIETEAW 212

Query: 1632 DEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPY 1453
            ++AAKEYKE L DMCE KLAPNLPY+K+L LGWFEP RD+IAAEQE+C  V  RA YGPY
Sbjct: 213  EQAAKEYKELLQDMCEQKLAPNLPYVKSLLLGWFEPFRDKIAAEQEKCREVRNRAAYGPY 272

Query: 1452 FGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR- 1276
             GQLPA+MMAVITMHKL SL+MT   +G V VVQAAC +G AIE E +IHRFLEK+ K+ 
Sbjct: 273  IGQLPADMMAVITMHKLMSLLMTSGSNGSVLVVQAACQVGSAIEQEVKIHRFLEKSKKKT 332

Query: 1275 NRDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGS 1096
            N DKK  S E D + KEQ  LRK+VT LMKKQKL QVR IVKGQDDSKPWGQD  AKVGS
Sbjct: 333  NIDKKSGSAEVDNITKEQELLRKRVTNLMKKQKLQQVRKIVKGQDDSKPWGQDTQAKVGS 392

Query: 1095 RLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQG 916
            RLIE+L+ETAYIQPP++Q A+ PPD+RPAFRH+LR V+KE +K  RRYG+IECDPLVRQG
Sbjct: 393  RLIELLVETAYIQPPINQLADSPPDIRPAFRHYLRNVQKEQKKISRRYGFIECDPLVRQG 452

Query: 915  LHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQP 736
            L RTA HMVIPYMPMLVPP++W  YDKGAHL LPSY+MR HGSRQQR A++RAP +Q+Q 
Sbjct: 453  LDRTARHMVIPYMPMLVPPISWQRYDKGAHLFLPSYVMRTHGSRQQRAAVKRAPREQMQL 512

Query: 735  IFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXX 556
            +FEAL+TLGNTKWRVN +VL+IVDRIWSSGG LA+LVDR+D PLPEKP+TED AEIR   
Sbjct: 513  VFEALDTLGNTKWRVNKRVLNIVDRIWSSGGRLANLVDRDDNPLPEKPETEDGAEIRKWK 572

Query: 555  XXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGS 376
                   KENSERHSQRCDVE+KL VARKM+DEEGFYYPHNLDFRGRAYP+HPYLNHLGS
Sbjct: 573  WKLKAVKKENSERHSQRCDVEIKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 632

Query: 375  DLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADR 196
            DLCRGILEFA+GRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAF ENH++DIFDSADR
Sbjct: 633  DLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADR 692

Query: 195  PLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRD 16
            PLEG+ WWLGAEDPFQCLA CINLAEA+RSSS E+TISH+PVHQDGSCNGLQHYAALGRD
Sbjct: 693  PLEGRRWWLGAEDPFQCLAVCINLAEALRSSSPESTISHIPVHQDGSCNGLQHYAALGRD 752

Query: 15   KLGAI 1
            KLGAI
Sbjct: 753  KLGAI 757


>ref|XP_010943345.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial isoform X1 [Elaeis
            guineensis]
          Length = 1042

 Score =  977 bits (2526), Expect = 0.0
 Identities = 492/725 (67%), Positives = 562/725 (77%), Gaps = 21/725 (2%)
 Frame = -2

Query: 2112 KPNIMLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFK 1933
            K + M R   + AS SS+NL FS    L++LR ISSFLGF+Q+S    +N ILDL+  F 
Sbjct: 33   KSSDMWRIFAQTASNSSKNLRFSAGRSLSALRPISSFLGFTQDSFLWEKNRILDLRPPFN 92

Query: 1932 YRFSELAMLQTRELLPLVIDAKYPIASPSVSLTDSKGFATAANEICSTDIXXXXXXXXXX 1753
             RF ++      EL P V  +  PI   S  L +S+GFA  A  + STD+          
Sbjct: 93   SRFCDIGPHHNGELWPSVGYSNCPIGKLSGFLANSRGFADVAEAVASTDLDEEASSIEEI 152

Query: 1752 XXS-------------KQRENSEQIHLKITRE-------MGRGKYQTLRRRQVKAETEAW 1633
                            K  + SE++  K  RE       MG  KY  LR+RQ+K ETEAW
Sbjct: 153  QSLLEETSTVEVAEDWKLSDRSEKLPQKAQREEPKKVSGMGAKKYAKLRQRQIKIETEAW 212

Query: 1632 DEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPY 1453
            ++AAKEYKE L DMCE KLAPNLPY+K+L LGWFEP RD+IAAEQE+C  V  RA YGPY
Sbjct: 213  EQAAKEYKELLQDMCEQKLAPNLPYVKSLLLGWFEPFRDKIAAEQEKCREVRNRAAYGPY 272

Query: 1452 FGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR- 1276
             GQLPA+MMAVITMHKL SL+MT   +G V VVQAAC +G AIE E +IHRFLEK+ K+ 
Sbjct: 273  IGQLPADMMAVITMHKLMSLLMTSGSNGSVLVVQAACQVGSAIEQEVKIHRFLEKSKKKT 332

Query: 1275 NRDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGS 1096
            N DKK  S E D + KEQ  LRK+VT LMKKQKL QVR IVKGQDDSKPWGQD  AKVGS
Sbjct: 333  NIDKKSGSAEVDNITKEQELLRKRVTNLMKKQKLQQVRKIVKGQDDSKPWGQDTQAKVGS 392

Query: 1095 RLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQG 916
            RLIE+L+ETAYIQPP++Q A+ PPD+RPAFRH+LR V+KE +K  RRYG+IECDPLVRQG
Sbjct: 393  RLIELLVETAYIQPPINQLADSPPDIRPAFRHYLRNVQKEQKKISRRYGFIECDPLVRQG 452

Query: 915  LHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQP 736
            L RTA HMVIPYMPMLVPP++W  YDKGAHL LPSY+MR HGSRQQR A++RAP +Q+Q 
Sbjct: 453  LDRTARHMVIPYMPMLVPPISWQRYDKGAHLFLPSYVMRTHGSRQQRAAVKRAPREQMQL 512

Query: 735  IFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXX 556
            +FEAL+TLGNTKWRVN +VL+IVDRIWSSGG LA+LVDR+D PLPEKP+TED AEIR   
Sbjct: 513  VFEALDTLGNTKWRVNKRVLNIVDRIWSSGGRLANLVDRDDNPLPEKPETEDGAEIRKWK 572

Query: 555  XXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGS 376
                   KENSERHSQRCDVE+KL VARKM+DEEGFYYPHNLDFRGRAYP+HPYLNHLGS
Sbjct: 573  WKLKAVKKENSERHSQRCDVEIKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 632

Query: 375  DLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADR 196
            DLCRGILEFA+GRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAF ENH++DIFDSADR
Sbjct: 633  DLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADR 692

Query: 195  PLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRD 16
            PLEG+ WWLGAEDPFQCLA CINLAEA+RSSS E+TISH+PVHQDGSCNGLQHYAALGRD
Sbjct: 693  PLEGRRWWLGAEDPFQCLAVCINLAEALRSSSPESTISHIPVHQDGSCNGLQHYAALGRD 752

Query: 15   KLGAI 1
            KLGAI
Sbjct: 753  KLGAI 757


>ref|XP_008788965.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Phoenix
            dactylifera]
          Length = 1036

 Score =  971 bits (2509), Expect = 0.0
 Identities = 491/725 (67%), Positives = 559/725 (77%), Gaps = 21/725 (2%)
 Frame = -2

Query: 2112 KPNIMLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFK 1933
            K + M R I + AS S +NL F     L++LR ISSFLGFSQ+S  C +N I DL+    
Sbjct: 33   KSSNMWRIIAQTASNSLKNLRFFAGGSLSALRPISSFLGFSQDSFLCEKNRIWDLRPPLS 92

Query: 1932 YRFSELAMLQTRELLPLVIDAKYPIASPSVSLTDSKGFATAANEICSTDIXXXXXXXXXX 1753
             RF ++   +  EL P V  +   I   S  L +SKG+A  A  + STD+          
Sbjct: 93   SRFCDIGSHRNGELWPSVGYSNCSIGKLSGFLANSKGYANVAEAVVSTDLDEEASSIEEI 152

Query: 1752 XXS-------------KQRENSEQIHLKITRE-------MGRGKYQTLRRRQVKAETEAW 1633
                            K  + S++   K   E       MG  KY  LR+RQ+K ETEAW
Sbjct: 153  QSLLEEMSRVEVAEDWKVSDRSQEFPQKAQLEEPKKVSGMGAKKYAKLRQRQIKIETEAW 212

Query: 1632 DEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPY 1453
            ++AAKEYKE L DMCE KLAPNLPY+K+LFLGWFEP RD+IAAEQE+C  V  RA YGPY
Sbjct: 213  EQAAKEYKELLQDMCEQKLAPNLPYVKSLFLGWFEPFRDKIAAEQEKCRDVRNRAAYGPY 272

Query: 1452 FGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTS-KR 1276
             GQLPA+MMAVITMHKL SL+MTG  +G V VVQAAC +G AIE E +IHRFLEK+  K 
Sbjct: 273  IGQLPADMMAVITMHKLMSLLMTGGSNGSVLVVQAACQVGSAIEQEVKIHRFLEKSKQKT 332

Query: 1275 NRDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGS 1096
            N +KK    E D + KEQ  LRKKVT LMKKQKL QVR IVKGQDDSKPWGQD+ AKVGS
Sbjct: 333  NINKKSGVAEVDNITKEQELLRKKVTNLMKKQKLQQVRKIVKGQDDSKPWGQDSRAKVGS 392

Query: 1095 RLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQG 916
            RLIE+L+ETAYIQPPV+Q A+ PPD+RPAFRH LR V+ E +K  RRYG+IECDPLVRQG
Sbjct: 393  RLIELLVETAYIQPPVNQLADSPPDIRPAFRHLLRNVQNEQKKISRRYGFIECDPLVRQG 452

Query: 915  LHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQP 736
            L RTA HMVIPYMPMLVPP++W GYDKGAHL LPSY+MR HGSRQQR+A++RAP KQLQ 
Sbjct: 453  LDRTARHMVIPYMPMLVPPISWKGYDKGAHLFLPSYLMRTHGSRQQREAVKRAPRKQLQL 512

Query: 735  IFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXX 556
            +FEAL+TLGNTKWRVN +VLSIVDR+WSSGG LA+LVDR+D+PLPEKP+TED AEIR   
Sbjct: 513  VFEALDTLGNTKWRVNKRVLSIVDRMWSSGGRLANLVDRDDIPLPEKPETEDGAEIRKWK 572

Query: 555  XXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGS 376
                   KENSERHSQRCDVE+KL VARKM+DEEGFYYPHNLDFRGRAYP+HPYLNHLGS
Sbjct: 573  WKLKSVKKENSERHSQRCDVEIKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 632

Query: 375  DLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADR 196
            DLCRGILEFA+GRPLGKSGL WLKIHLANLYAGGVDKLSYDGRIAF ENH++DIFDSADR
Sbjct: 633  DLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADR 692

Query: 195  PLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRD 16
            PLEG+ WWLGAEDPFQCLA CINLAEA+RSSS E+TISH+PVHQDGSCNGLQHYAALGRD
Sbjct: 693  PLEGRRWWLGAEDPFQCLAVCINLAEALRSSSPESTISHIPVHQDGSCNGLQHYAALGRD 752

Query: 15   KLGAI 1
            KLGAI
Sbjct: 753  KLGAI 757


>ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Nelumbo nucifera]
          Length = 1031

 Score =  961 bits (2484), Expect = 0.0
 Identities = 485/735 (65%), Positives = 562/735 (76%), Gaps = 18/735 (2%)
 Frame = -2

Query: 2154 SSFVP*QPKRFCTRKPNIMLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHF 1975
            ++F P    R  T     M R+I R+AS++   L+       +S+     F+GFSQ+S  
Sbjct: 26   ATFCPPNSSRISTA----MWRHIARRASLTKVRLSRDS----SSILRTFGFMGFSQDSIL 77

Query: 1974 CPQNSILDLKVSFKYRFSELAMLQTREL--------LPLVIDAKYPIASPSVSLTDSKGF 1819
                   +LK S  +RFSE + L+  EL         P++   + PI+ P +S    KG+
Sbjct: 78   NDTTRPFELKSSMSFRFSERSFLRNGELPSKEDELGRPILGCFRNPISPPRLS-NHPKGY 136

Query: 1818 ATAANEICSTDIXXXXXXXXXXXXS---------KQRENSEQIHLKITREMGRGKYQTLR 1666
            A+ A  +CS D                       K+ E  +Q  +K+   MG+GKY  LR
Sbjct: 137  ASVAEAVCSMDAEEDLSAIDEIQELLEEMGKEEKKELELRDQKQIKLVGGMGQGKYLLLR 196

Query: 1665 RRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCM 1486
            RRQVK ETEAW++AAKEY+E L DMCE KLAPNLPYMK+LFLGWFEPLRD I AEQE C 
Sbjct: 197  RRQVKIETEAWEQAAKEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDCIVAEQELCR 256

Query: 1485 GVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARI 1306
                R  Y PYF QLPAEMM+VITMHKL  L+MTG   G   VVQAAC IGEAIENE RI
Sbjct: 257  KGKNRTAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGSCRVVQAACQIGEAIENEVRI 316

Query: 1305 HRFLEKTSKR-NRDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKP 1129
            H+FLEKT K+ ++DKK +  E D V KEQ  LRKKVT LMKKQKL QVR IVKGQDDSKP
Sbjct: 317  HKFLEKTRKKTDKDKKADGGESDPVIKEQQRLRKKVTDLMKKQKLQQVRQIVKGQDDSKP 376

Query: 1128 WGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYG 949
            WGQDA AKVGSRLIE+L++TAYIQPPVDQ A+GPPD+RPAFRH L+TV KE QK  RRYG
Sbjct: 377  WGQDAQAKVGSRLIELLMQTAYIQPPVDQLADGPPDIRPAFRHSLKTVTKEAQKTSRRYG 436

Query: 948  YIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDA 769
             IECDPLVR+GL RTA HMVIPYMPMLVPPVNW GYDKGA+L LPSY+MR HG+RQQR+A
Sbjct: 437  VIECDPLVRKGLERTARHMVIPYMPMLVPPVNWTGYDKGAYLFLPSYVMRTHGARQQREA 496

Query: 768  IRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPD 589
            ++RAP KQL+P+FEAL+TLGNTKWRVN +VLS+VDRIW+SGG LADLVDRED+P+PE+PD
Sbjct: 497  VKRAPRKQLEPVFEALDTLGNTKWRVNKRVLSVVDRIWASGGRLADLVDREDVPIPEEPD 556

Query: 588  TEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAY 409
            TED+AEI+          KENSERHSQRCD+ELKL VAR+M+DE+GF+YPHNLDFRGRAY
Sbjct: 557  TEDEAEIKKWKWKVKAAKKENSERHSQRCDIELKLAVARRMKDEDGFFYPHNLDFRGRAY 616

Query: 408  PLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIEN 229
            P+HPYLNHLGSDLCRGILEFA+GRPLGKSGL WLKIHLANLYAGGVDKLSY+GRIAF EN
Sbjct: 617  PMHPYLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHLANLYAGGVDKLSYEGRIAFTEN 676

Query: 228  HMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCN 49
            H++DIFDSADRPLEG+ WWL AEDPFQCLAACINL+EA+RSSS E TISH+PVHQDGSCN
Sbjct: 677  HLDDIFDSADRPLEGRRWWLNAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCN 736

Query: 48   GLQHYAALGRDKLGA 4
            GLQHYAALGRDKLGA
Sbjct: 737  GLQHYAALGRDKLGA 751


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  909 bits (2348), Expect = 0.0
 Identities = 450/701 (64%), Positives = 525/701 (74%)
 Frame = -2

Query: 2106 NIMLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFKYR 1927
            N+      R+  +SSQ+ +FS   C +               H      +  L+     R
Sbjct: 4    NLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLR-----R 58

Query: 1926 FSELAMLQTRELLPLVIDAKYPIASPSVSLTDSKGFATAANEICSTDIXXXXXXXXXXXX 1747
               L+  Q     P     K P+    +     KG+A+AA  I S +             
Sbjct: 59   IGVLSFQQDELGRPGFGVTKTPVNFFGL-FGYQKGYASAAEAIASEEDMSGVDEVQELVE 117

Query: 1746 SKQRENSEQIHLKITREMGRGKYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPN 1567
               + +  +   K+   + +GK+  LRRRQ+K ETEAW+EAAKEY+E L+DMCE KLAPN
Sbjct: 118  EVNKGDKLEKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPN 177

Query: 1566 LPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMM 1387
            LPY+K+LFLGWFEPLRD IAAEQ+ C     RA Y PYF  LPA+MMAVITMHKL  L+M
Sbjct: 178  LPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLM 237

Query: 1386 TGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKRNRDKKGESNEGDTVNKEQNSLRK 1207
            TGEG+G   VVQAACHIGEAIE+E RI RF+EKT K++          + V KEQ  LRK
Sbjct: 238  TGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRK 297

Query: 1206 KVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGP 1027
            KV++LMKKQKL QVR IVK QDDSKPWGQDA+ KVGSRLIE+L+ETAYIQPP DQ  +GP
Sbjct: 298  KVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGP 357

Query: 1026 PDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWA 847
            PD+RPAF H L+TV KE QK  RRYG IECDPLVR+GL +TA HMVIPYMPMLVPP+NW 
Sbjct: 358  PDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWT 417

Query: 846  GYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIV 667
            GYDKGA+L LPSY+MRIHG+RQQR+AI+RAP K L+P FEALNTLGNTKWR+N +VL ++
Sbjct: 418  GYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVI 477

Query: 666  DRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELK 487
            DRIW+SGG LADLVDRED+PLPE+PDTED+AEIR          KENSERHSQRCD+ELK
Sbjct: 478  DRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELK 537

Query: 486  LVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWL 307
            L VARKM+DE+GF+YPHNLDFRGRAYP+HPYLNHLGSDLCRGILEFA+GRPLGKSGL WL
Sbjct: 538  LAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWL 597

Query: 306  KIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACIN 127
            KIHLAN+YAGGVDKLSY+GR+AF ENH+EDIFDSADRPLEG+ WWL AEDPFQCLA CIN
Sbjct: 598  KIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCIN 657

Query: 126  LAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRDKLGA 4
            L+EA+RSSS E TISH+PVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 658  LSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGA 698


>ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X2 [Nelumbo
            nucifera]
          Length = 942

 Score =  905 bits (2339), Expect = 0.0
 Identities = 461/715 (64%), Positives = 533/715 (74%), Gaps = 16/715 (2%)
 Frame = -2

Query: 2100 MLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFKYRFS 1921
            M RNIV++A  ++     S     +S+      +G+SQ   F  +    + K S    FS
Sbjct: 1    MWRNIVKQACSTNFFSRDS-----SSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGFS 55

Query: 1920 ELAMLQTRELLPLVIDA---KYPIASPSVSLT----DSKGFATAANEICSTDIXXXXXXX 1762
            E   L+  E      D     +     S+ L+      KG+A+ A  + STD        
Sbjct: 56   ESCFLRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSVV 115

Query: 1761 XXXXXS--------KQRENSEQIHLKITREMGRGKYQTLRRRQVKAETEAWDEAAKEYKE 1606
                          K+ E S Q   K+   MG+GKY  LRRRQVK ETEAW++AAKEYKE
Sbjct: 116  DEIQELLEEMSKEEKELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYKE 175

Query: 1605 FLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPYFGQLPAEMM 1426
             L DMCE KLAPNLPYMK+LFLGWFEPLRD IAAEQE C     RA Y PYF QLPAEMM
Sbjct: 176  LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPYFDQLPAEMM 235

Query: 1425 AVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR-NRDKKGESN 1249
            +VITMHKL  L+MTG   G   VVQAAC IG+AIENE RI++FLEKT K+ ++DKK E  
Sbjct: 236  SVITMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKTDKDKKAEGG 295

Query: 1248 EGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGSRLIEILLET 1069
            E D   KEQ  LRKKVT LMKKQKL QVR IVK QDDSKPWGQDA AKVGS LIE+L++T
Sbjct: 296  ESDPAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGSHLIELLMQT 355

Query: 1068 AYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQGLHRTAMHMV 889
            AYIQ P DQ A+GPPD+RPAFRH L+T+ KE QK  RRYG IECDPLVR+GL RTA HMV
Sbjct: 356  AYIQSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKGLERTARHMV 415

Query: 888  IPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQPIFEALNTLG 709
            IPYMPMLVPP+NW GYDKGA+L LPSY+MR HG+RQQR+A++R   KQL+PIFEAL+TLG
Sbjct: 416  IPYMPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEPIFEALDTLG 475

Query: 708  NTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXXXXXXXXXKE 529
            NTKWR+N +VL +VDRIW+SGG LADLVDRED+PLPE+P+TED+AE++          KE
Sbjct: 476  NTKWRINKRVLGVVDRIWASGGRLADLVDREDVPLPEEPETEDEAELKKWKWKVKAVKKE 535

Query: 528  NSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGSDLCRGILEF 349
            NSERHSQRCD ELKL VAR+M+DE GF+YPHNLDFRGRAYP+HPYLNHLGSDLCRGILEF
Sbjct: 536  NSERHSQRCDTELKLAVARRMKDENGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 595

Query: 348  AKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADRPLEGKHWWL 169
            A+GRPLGKSGL WLKIHLANLYAGGVDKLSY+GRIAF ENH++DIFDSADRPLEG+ WWL
Sbjct: 596  AEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWL 655

Query: 168  GAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRDKLGA 4
             A+DPFQCLA CINL+EA+RS S E  ISH+P+HQDGSCNGLQHYAALGRDKLGA
Sbjct: 656  NADDPFQCLAVCINLSEALRSCSPETMISHIPIHQDGSCNGLQHYAALGRDKLGA 710


>ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X1 [Nelumbo
            nucifera]
          Length = 990

 Score =  905 bits (2339), Expect = 0.0
 Identities = 461/715 (64%), Positives = 533/715 (74%), Gaps = 16/715 (2%)
 Frame = -2

Query: 2100 MLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHFCPQNSILDLKVSFKYRFS 1921
            M RNIV++A  ++     S     +S+      +G+SQ   F  +    + K S    FS
Sbjct: 1    MWRNIVKQACSTNFFSRDS-----SSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGFS 55

Query: 1920 ELAMLQTRELLPLVIDA---KYPIASPSVSLT----DSKGFATAANEICSTDIXXXXXXX 1762
            E   L+  E      D     +     S+ L+      KG+A+ A  + STD        
Sbjct: 56   ESCFLRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSVV 115

Query: 1761 XXXXXS--------KQRENSEQIHLKITREMGRGKYQTLRRRQVKAETEAWDEAAKEYKE 1606
                          K+ E S Q   K+   MG+GKY  LRRRQVK ETEAW++AAKEYKE
Sbjct: 116  DEIQELLEEMSKEEKELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYKE 175

Query: 1605 FLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPYFGQLPAEMM 1426
             L DMCE KLAPNLPYMK+LFLGWFEPLRD IAAEQE C     RA Y PYF QLPAEMM
Sbjct: 176  LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPYFDQLPAEMM 235

Query: 1425 AVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR-NRDKKGESN 1249
            +VITMHKL  L+MTG   G   VVQAAC IG+AIENE RI++FLEKT K+ ++DKK E  
Sbjct: 236  SVITMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKTDKDKKAEGG 295

Query: 1248 EGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGSRLIEILLET 1069
            E D   KEQ  LRKKVT LMKKQKL QVR IVK QDDSKPWGQDA AKVGS LIE+L++T
Sbjct: 296  ESDPAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGSHLIELLMQT 355

Query: 1068 AYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQGLHRTAMHMV 889
            AYIQ P DQ A+GPPD+RPAFRH L+T+ KE QK  RRYG IECDPLVR+GL RTA HMV
Sbjct: 356  AYIQSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKGLERTARHMV 415

Query: 888  IPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQPIFEALNTLG 709
            IPYMPMLVPP+NW GYDKGA+L LPSY+MR HG+RQQR+A++R   KQL+PIFEAL+TLG
Sbjct: 416  IPYMPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEPIFEALDTLG 475

Query: 708  NTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXXXXXXXXXKE 529
            NTKWR+N +VL +VDRIW+SGG LADLVDRED+PLPE+P+TED+AE++          KE
Sbjct: 476  NTKWRINKRVLGVVDRIWASGGRLADLVDREDVPLPEEPETEDEAELKKWKWKVKAVKKE 535

Query: 528  NSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGSDLCRGILEF 349
            NSERHSQRCD ELKL VAR+M+DE GF+YPHNLDFRGRAYP+HPYLNHLGSDLCRGILEF
Sbjct: 536  NSERHSQRCDTELKLAVARRMKDENGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 595

Query: 348  AKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADRPLEGKHWWL 169
            A+GRPLGKSGL WLKIHLANLYAGGVDKLSY+GRIAF ENH++DIFDSADRPLEG+ WWL
Sbjct: 596  AEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWL 655

Query: 168  GAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRDKLGA 4
             A+DPFQCLA CINL+EA+RS S E  ISH+P+HQDGSCNGLQHYAALGRDKLGA
Sbjct: 656  NADDPFQCLAVCINLSEALRSCSPETMISHIPIHQDGSCNGLQHYAALGRDKLGA 710


>ref|XP_009394557.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Musa
            acuminata subsp. malaccensis]
          Length = 994

 Score =  902 bits (2331), Expect = 0.0
 Identities = 471/720 (65%), Positives = 538/720 (74%), Gaps = 20/720 (2%)
 Frame = -2

Query: 2100 MLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHFCPQNSILDLKVS-FKYRF 1924
            M RNI R AS +S+NL  S +   + L   + FL   Q+S +C ++ ILD        R 
Sbjct: 1    MWRNIARTASSASRNLRLSSNRP-SPLPATTGFLSCFQDSIWCEKSRILDPATPPLVTRL 59

Query: 1923 SELAMLQTRELLPLVID-AKYPIASPSVSLTDSKGFATAANEICSTDIXXXXXXXXXXXX 1747
             +    Q  E LP  +      I   S    +S+ FA+ A  + STD             
Sbjct: 60   FDAGFWQKGESLPKTLGHVNSLIMEVSGVPRNSRSFASVAEAVSSTDADEDTSTIEEMQR 119

Query: 1746 S-----------------KQRENSEQIHLKITREMGRGKYQTLRRRQVKAETEAWDEAAK 1618
                              K R N +    KI   M   KY  LRRRQ++ ETEAW+ AAK
Sbjct: 120  LLELSAEISGGKEDKRFNKLRRNQQ--FPKIKAGMSAEKYTMLRRRQIQIETEAWETAAK 177

Query: 1617 EYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGPYFGQLP 1438
            EYKE L DMCE KLAPNLPYMK+LFLGWFEP RD+I AEQ + M  NK + Y  YF QLP
Sbjct: 178  EYKELLMDMCERKLAPNLPYMKSLFLGWFEPFRDKIVAEQGQSMAKNKFS-YQHYFSQLP 236

Query: 1437 AEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR-NRDKK 1261
            AEM+AVITMHKL SL+MTG  SGGV VVQA C +GEAIE EARIHRFLEKT K+ ++D+ 
Sbjct: 237  AEMVAVITMHKLVSLLMTGGESGGVRVVQAVCQVGEAIEQEARIHRFLEKTRKKTSKDQT 296

Query: 1260 GESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKVGSRLIEI 1081
             +  EG  V KE+  LRKKVT LMKKQK+ QVR IV+GQD SKPWGQDA  KVGSRLIE+
Sbjct: 297  SDEVEGGAVTKEEQILRKKVTDLMKKQKVQQVRKIVRGQDVSKPWGQDAQVKVGSRLIEL 356

Query: 1080 LLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLVRQGLHRTA 901
             +ETA+IQPPV QSA+GPPD+RPAFR  +R V  E  K  +RYG IECDPLVRQGL RTA
Sbjct: 357  FMETAFIQPPVSQSADGPPDIRPAFRRVIRIVSSEQLKT-KRYGIIECDPLVRQGLDRTA 415

Query: 900  MHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQLQPIFEAL 721
             HMVIPYMPML+PP+NW GYD+GAHL+LPSYIMRIHG+RQQR+A++RAP KQ+Q +F+AL
Sbjct: 416  RHMVIPYMPMLMPPLNWKGYDRGAHLILPSYIMRIHGARQQREALKRAPKKQMQAVFQAL 475

Query: 720  NTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIRXXXXXXXX 541
            +TLG TKWRVN +VLSIVDRIWSSGG LADLVDRED+PLPEKPDTED++E+R        
Sbjct: 476  DTLGCTKWRVNKRVLSIVDRIWSSGGRLADLVDREDIPLPEKPDTEDESELRKWKWKMRS 535

Query: 540  XXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNHLGSDLCRG 361
              KENSERHS+RCDVELKL VARKM+DEEGFYYPHNLDFRGRAYP+HPYLNHLGSDLCRG
Sbjct: 536  VKKENSERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG 595

Query: 360  ILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDSADRPLEGK 181
            ILEFA+GRPL KSGL WLKIHLANLYAGGVDKLSYDGR+AF ENH+EDIFDSADRPLEG+
Sbjct: 596  ILEFAEGRPLMKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTENHVEDIFDSADRPLEGR 655

Query: 180  HWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAALGRDKLGAI 1
             WWLGAEDPFQCLA CINLAEA+RSSS E TISH+PVHQDGSCNGLQHYAALGRDKLGAI
Sbjct: 656  RWWLGAEDPFQCLAVCINLAEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAI 715


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Setaria italica]
          Length = 1005

 Score =  891 bits (2302), Expect = 0.0
 Identities = 425/563 (75%), Positives = 481/563 (85%), Gaps = 2/563 (0%)
 Frame = -2

Query: 1683 KYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAA 1504
            KY +LRRRQ++ ETEAW++AAKEY+E L DMCE KLAPNLPY+K+LFLGWFEPLRD+IAA
Sbjct: 164  KYASLRRRQIRVETEAWEQAAKEYRELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDQIAA 223

Query: 1503 EQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAI 1324
            EQE       RA +GPYF  LPA+MMAVITMHKL  L+MTG G G V V+QAAC IGEAI
Sbjct: 224  EQELVANRGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 283

Query: 1323 ENEARIHRFLEKTSKR-NRDKKGESNEGDT-VNKEQNSLRKKVTLLMKKQKLHQVRMIVK 1150
            E+E RIHRFLEKT K+ N++K+ E    D+ + KEQ  LRKKVT LMKKQKL QVR IVK
Sbjct: 284  EHEVRIHRFLEKTRKKSNKEKENEEEIFDSDIAKEQQRLRKKVTDLMKKQKLRQVRKIVK 343

Query: 1149 GQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQ 970
             QDDS+PWGQDAHAKVGSRLIE+ +ETA+IQPP  QS++G PD+RPAFRH +RTV KE Q
Sbjct: 344  NQDDSRPWGQDAHAKVGSRLIELFIETAHIQPPASQSSDGLPDIRPAFRHEMRTVPKEQQ 403

Query: 969  KFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHG 790
            K  RRYG I+CDPLVRQGL RTA HMVIPYMPML+PP+ W GYDKGAHL LPSY+MR HG
Sbjct: 404  KHSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHG 463

Query: 789  SRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDL 610
            +RQQR+A++RAP +Q+Q +FEALNTLG+TKWRVN +VLSI+DRIWSSGG LADLVDR D+
Sbjct: 464  ARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLVDRTDV 523

Query: 609  PLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNL 430
            PLPEKPDTED+  ++          K NSERHSQRCDVELKL VARKM+DEEGFYYPHNL
Sbjct: 524  PLPEKPDTEDETVLKKWRWHTRSVKKGNSERHSQRCDVELKLAVARKMKDEEGFYYPHNL 583

Query: 429  DFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDG 250
            DFRGRAYP+HPYLNHLGSDLCRG+LEFA+GRPLG+SGL WLKIHLANLYAGGVDKLSY G
Sbjct: 584  DFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYAG 643

Query: 249  RIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPV 70
            RIAF ENH+E+IFDSADRPLEGK WWLGAEDPFQCLA C+NL EA+RS S E TISH+PV
Sbjct: 644  RIAFAENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSPSPEATISHIPV 703

Query: 69   HQDGSCNGLQHYAALGRDKLGAI 1
            HQDGSCNGLQHYAALGRDKLGAI
Sbjct: 704  HQDGSCNGLQHYAALGRDKLGAI 726


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score =  891 bits (2302), Expect = 0.0
 Identities = 426/564 (75%), Positives = 481/564 (85%), Gaps = 3/564 (0%)
 Frame = -2

Query: 1683 KYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAA 1504
            +Y +LRRRQ++ ETEAW++AAKEY+E LADMCE KLAPNLPY+K+LFLGWFEPLRD+I  
Sbjct: 134  RYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLRDQIVT 193

Query: 1503 EQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAI 1324
            EQE       RA +GPYF  LPA+MMAVITMHKL  L+MTG G G V V+QAAC IGEAI
Sbjct: 194  EQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 253

Query: 1323 ENEARIHRFLEKTSKRNRDK--KGESNEGDT-VNKEQNSLRKKVTLLMKKQKLHQVRMIV 1153
            E+E RI+RFLEKT K++  +  K E   GDT + KEQ  LRKKVT LMKKQKL QVR IV
Sbjct: 254  EHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQVRNIV 313

Query: 1152 KGQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEH 973
            K QD+S+PWGQD  AKVGSRLIE+ ++TA+IQPP  QS++G PD+RPAFRH +RTV KE 
Sbjct: 314  KNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQ 373

Query: 972  QKFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIH 793
            QK  RRYG I+CDPLVRQGL RTA HMVIPYMPML+PP+ W GYDKGAHL LPSY+MR H
Sbjct: 374  QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTH 433

Query: 792  GSRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDRED 613
            G+RQQR+A++RAP +Q+Q +FEALNTLG+TKWRVN +VLSIVDRIWSSGG LADLVDR D
Sbjct: 434  GARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTD 493

Query: 612  LPLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHN 433
            +PLPEKPDTED+  I+          KENSERHSQRCDVELKL VARKM+DEEGFYYPHN
Sbjct: 494  VPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHN 553

Query: 432  LDFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYD 253
            LDFRGRAYP+HPYLNHLGSDLCRGILEFA+GRPLGKSGLHWLKIHLANLYAGGVDKLSYD
Sbjct: 554  LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYD 613

Query: 252  GRIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLP 73
            GR+AF ENH+E+IFDSADRPLEGK WWLGAEDPFQCLA C+NL EA+RSSS E TISH+P
Sbjct: 614  GRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIP 673

Query: 72   VHQDGSCNGLQHYAALGRDKLGAI 1
            VHQDGSCNGLQHYAALGRDKLGAI
Sbjct: 674  VHQDGSCNGLQHYAALGRDKLGAI 697


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  890 bits (2300), Expect = 0.0
 Identities = 426/567 (75%), Positives = 482/567 (85%), Gaps = 2/567 (0%)
 Frame = -2

Query: 1695 MGRGKYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRD 1516
            +G  KY  LRRRQ++ ETEAW++AA+EY+E LADMC+ KLAPNLPY+K+LFLGWFEPLRD
Sbjct: 138  VGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRD 197

Query: 1515 EIAAEQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHI 1336
            +I AEQE       RA +  YF  LPA+MMAVITMHKL  L+MTG G G V V+QAAC I
Sbjct: 198  QIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 257

Query: 1335 GEAIENEARIHRFLEKTSKR-NRDKKGESNEGDT-VNKEQNSLRKKVTLLMKKQKLHQVR 1162
            GEAIE+E RIH+FLEKT K+ N++   E   GD+ + KEQ  LRKKVT LMKKQK+ QVR
Sbjct: 258  GEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVR 317

Query: 1161 MIVKGQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVK 982
             IVK QD+SKPWGQDAHAKVGSRLIE+++ETAYIQPP  QSA+GPPD+RPAF H +RTV 
Sbjct: 318  NIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 377

Query: 981  KEHQKFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIM 802
            +E QK  RRYG I+CDPLVRQGL RTA HMVIPYMPML+PP++W GYDKGAHL LPSY+M
Sbjct: 378  REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 437

Query: 801  RIHGSRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVD 622
            R HG+RQQRDA+RRAP +Q+Q +FEALNTLG+TKWRVN +VLSIVDRIWSSGG LADLVD
Sbjct: 438  RTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 497

Query: 621  REDLPLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYY 442
            R D+ LPEKPDTED+ +++          KENSERHSQRCDVELKL VARKM+DE+GFYY
Sbjct: 498  RTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYY 557

Query: 441  PHNLDFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKL 262
            PHNLDFRGRAYP+HPYLNHLGSDLCRG+LEFA+GRPLGKSGL WLKIHLANLYAGGVDKL
Sbjct: 558  PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKL 617

Query: 261  SYDGRIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTIS 82
            SYDGRIAF ENH+EDIFDSADRPLEGK WWLGAEDPFQCLA CINL EA+RS S E  IS
Sbjct: 618  SYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMIS 677

Query: 81   HLPVHQDGSCNGLQHYAALGRDKLGAI 1
            H+PVHQDGSCNGLQHYAALGRDKLGAI
Sbjct: 678  HIPVHQDGSCNGLQHYAALGRDKLGAI 704


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
            gi|48716846|dbj|BAD23544.1| putative phage-type RNA
            polymerase [Oryza sativa Japonica Group]
            gi|215694941|dbj|BAG90132.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 951

 Score =  890 bits (2300), Expect = 0.0
 Identities = 426/567 (75%), Positives = 482/567 (85%), Gaps = 2/567 (0%)
 Frame = -2

Query: 1695 MGRGKYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRD 1516
            +G  KY  LRRRQ++ ETEAW++AA+EY+E LADMC+ KLAPNLPY+K+LFLGWFEPLRD
Sbjct: 172  VGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRD 231

Query: 1515 EIAAEQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHI 1336
            +I AEQE       RA +  YF  LPA+MMAVITMHKL  L+MTG G G V V+QAAC I
Sbjct: 232  QIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 291

Query: 1335 GEAIENEARIHRFLEKTSKR-NRDKKGESNEGDT-VNKEQNSLRKKVTLLMKKQKLHQVR 1162
            GEAIE+E RIH+FLEKT K+ N++   E   GD+ + KEQ  LRKKVT LMKKQK+ QVR
Sbjct: 292  GEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVR 351

Query: 1161 MIVKGQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVK 982
             IVK QD+SKPWGQDAHAKVGSRLIE+++ETAYIQPP  QSA+GPPD+RPAF H +RTV 
Sbjct: 352  NIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 411

Query: 981  KEHQKFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIM 802
            +E QK  RRYG I+CDPLVRQGL RTA HMVIPYMPML+PP++W GYDKGAHL LPSY+M
Sbjct: 412  REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 471

Query: 801  RIHGSRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVD 622
            R HG+RQQRDA+RRAP +Q+Q +FEALNTLG+TKWRVN +VLSIVDRIWSSGG LADLVD
Sbjct: 472  RTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 531

Query: 621  REDLPLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYY 442
            R D+ LPEKPDTED+ +++          KENSERHSQRCDVELKL VARKM+DE+GFYY
Sbjct: 532  RTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYY 591

Query: 441  PHNLDFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKL 262
            PHNLDFRGRAYP+HPYLNHLGSDLCRG+LEFA+GRPLGKSGL WLKIHLANLYAGGVDKL
Sbjct: 592  PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKL 651

Query: 261  SYDGRIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTIS 82
            SYDGRIAF ENH+EDIFDSADRPLEGK WWLGAEDPFQCLA CINL EA+RS S E  IS
Sbjct: 652  SYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMIS 711

Query: 81   HLPVHQDGSCNGLQHYAALGRDKLGAI 1
            H+PVHQDGSCNGLQHYAALGRDKLGAI
Sbjct: 712  HIPVHQDGSCNGLQHYAALGRDKLGAI 738


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase (mitochondrion) [Oryza
            sativa Japonica Group] gi|113630892|dbj|BAF24573.1|
            Os09g0246200 [Oryza sativa Japonica Group]
          Length = 1017

 Score =  890 bits (2300), Expect = 0.0
 Identities = 426/567 (75%), Positives = 482/567 (85%), Gaps = 2/567 (0%)
 Frame = -2

Query: 1695 MGRGKYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRD 1516
            +G  KY  LRRRQ++ ETEAW++AA+EY+E LADMC+ KLAPNLPY+K+LFLGWFEPLRD
Sbjct: 172  VGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRD 231

Query: 1515 EIAAEQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHI 1336
            +I AEQE       RA +  YF  LPA+MMAVITMHKL  L+MTG G G V V+QAAC I
Sbjct: 232  QIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 291

Query: 1335 GEAIENEARIHRFLEKTSKR-NRDKKGESNEGDT-VNKEQNSLRKKVTLLMKKQKLHQVR 1162
            GEAIE+E RIH+FLEKT K+ N++   E   GD+ + KEQ  LRKKVT LMKKQK+ QVR
Sbjct: 292  GEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVR 351

Query: 1161 MIVKGQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVK 982
             IVK QD+SKPWGQDAHAKVGSRLIE+++ETAYIQPP  QSA+GPPD+RPAF H +RTV 
Sbjct: 352  NIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 411

Query: 981  KEHQKFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIM 802
            +E QK  RRYG I+CDPLVRQGL RTA HMVIPYMPML+PP++W GYDKGAHL LPSY+M
Sbjct: 412  REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 471

Query: 801  RIHGSRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVD 622
            R HG+RQQRDA+RRAP +Q+Q +FEALNTLG+TKWRVN +VLSIVDRIWSSGG LADLVD
Sbjct: 472  RTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 531

Query: 621  REDLPLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYY 442
            R D+ LPEKPDTED+ +++          KENSERHSQRCDVELKL VARKM+DE+GFYY
Sbjct: 532  RTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYY 591

Query: 441  PHNLDFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKL 262
            PHNLDFRGRAYP+HPYLNHLGSDLCRG+LEFA+GRPLGKSGL WLKIHLANLYAGGVDKL
Sbjct: 592  PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKL 651

Query: 261  SYDGRIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTIS 82
            SYDGRIAF ENH+EDIFDSADRPLEGK WWLGAEDPFQCLA CINL EA+RS S E  IS
Sbjct: 652  SYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMIS 711

Query: 81   HLPVHQDGSCNGLQHYAALGRDKLGAI 1
            H+PVHQDGSCNGLQHYAALGRDKLGAI
Sbjct: 712  HIPVHQDGSCNGLQHYAALGRDKLGAI 738


>ref|XP_006844103.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Amborella
            trichopoda] gi|548846502|gb|ERN05778.1| hypothetical
            protein AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score =  884 bits (2284), Expect = 0.0
 Identities = 431/624 (69%), Positives = 493/624 (79%), Gaps = 15/624 (2%)
 Frame = -2

Query: 1827 KGFATAANEICSTDIXXXXXXXXXXXXSKQRENSEQIHLKITRE--------------MG 1690
            KGFA AA  + STDI                 N    +  I  E              MG
Sbjct: 104  KGFANAAEAVVSTDIDEDCSSGSEETHLVLPTNGYNSNGAIREEREKLKPKNGYKDGVMG 163

Query: 1689 RGKYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEI 1510
            + KY  LR RQVK ETEAWD+AAKEY+E + DMCEHKLAPNLPYMK+LFLGWFEPLRD I
Sbjct: 164  KAKYLALRTRQVKIETEAWDQAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWFEPLRDII 223

Query: 1509 AAEQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGE 1330
            A+EQ        +  Y PYF QLPA+MM+VITMHKL  L+MTG  +G   +VQAAC IGE
Sbjct: 224  ASEQASYKAGKNKGAYAPYFMQLPADMMSVITMHKLMGLLMTGTDNGSTRLVQAACQIGE 283

Query: 1329 AIENEARIHRFLEKTSKRN-RDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIV 1153
            AIE E +IHRF EKT K++ ++KK +  E +  +KE+ SLRK+VT LMKKQKLHQVR IV
Sbjct: 284  AIEQEVKIHRFFEKTKKKSDKEKKLDGEEPNEGDKEKESLRKRVTNLMKKQKLHQVRKIV 343

Query: 1152 KGQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEH 973
            KGQDD+KPWG D HAKVGSRLIE+L+ETAY+QPPVDQSAEGPPD+RPAFRH L+TV K  
Sbjct: 344  KGQDDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAEGPPDIRPAFRHILKTVTKND 403

Query: 972  QKFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIH 793
            QK  RRYG IECDPL+ +GL +TA HMVIPYMPMLVPPV W GYD+G HL LPSY+MRIH
Sbjct: 404  QKIRRRYGVIECDPLICKGLEKTARHMVIPYMPMLVPPVKWTGYDRGGHLFLPSYVMRIH 463

Query: 792  GSRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDRED 613
            G+RQQR AI+ AP KQL  ++EAL+TLG TKWRVN +VL ++DRIW+ GG LADLVDRED
Sbjct: 464  GARQQRYAIKHAPRKQLLKVYEALDTLGTTKWRVNKRVLGVIDRIWADGGRLADLVDRED 523

Query: 612  LPLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHN 433
            + +PEKPDTED+A+IR          K+NSE HSQRCD ELKL VAR+M+DEEGF+YPHN
Sbjct: 524  VAIPEKPDTEDEAKIREWKWLVKGARKKNSELHSQRCDTELKLNVARRMKDEEGFHYPHN 583

Query: 432  LDFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYD 253
            LDFRGRAYP+HPYLNHLGSDLCRGILEFA+GRPLGKSGL WLKIHLANLYAGGVDKLSYD
Sbjct: 584  LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYD 643

Query: 252  GRIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLP 73
            GR+ F+ENH+EDIFDSADRPLEG  WWLGAEDPFQCLAAC+NL+EA+RSSS + TISH+P
Sbjct: 644  GRLEFVENHLEDIFDSADRPLEGGRWWLGAEDPFQCLAACVNLSEALRSSSPDTTISHMP 703

Query: 72   VHQDGSCNGLQHYAALGRDKLGAI 1
            VHQDGSCNGLQHYAALGRDKLGAI
Sbjct: 704  VHQDGSCNGLQHYAALGRDKLGAI 727


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score =  882 bits (2279), Expect = 0.0
 Identities = 422/559 (75%), Positives = 475/559 (84%), Gaps = 2/559 (0%)
 Frame = -2

Query: 1671 LRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQER 1492
            LRRRQV+ ETEAW++AAKEY+E LADMCEHKLAPNLPY+K+LFLGWFEPLRD+I AEQ+ 
Sbjct: 2    LRRRQVQIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDL 61

Query: 1491 CMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEA 1312
                  RA +  YF  LPA+MMAVITMHKL  L+MTG G G V V+QAAC IGEAIE+E 
Sbjct: 62   VCERRARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEV 121

Query: 1311 RIHRFLEKTSK-RNRDKKGESNEG-DTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDD 1138
            R+H+FLEK  K R+++   E   G   + KEQ  LRKKVT LMKK KL QVR IVK QD+
Sbjct: 122  RLHKFLEKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDN 181

Query: 1137 SKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQKFGR 958
            SKPWGQD HAKVGSRLIE+++ETAYIQPP  QSA+GPPD+RPAF H +RTV KE QK  R
Sbjct: 182  SKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSR 241

Query: 957  RYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQ 778
            RYG I+CDPLVRQGL RTA HMVIPYMPML+PP++W GYDKGAHL LPSY+MR HG+RQQ
Sbjct: 242  RYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQ 301

Query: 777  RDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPE 598
            R+A++RAP +Q+Q +FEAL+TLG+TKWRVN +VLSIVDRIWSSGG LADLVDR D+ LPE
Sbjct: 302  REAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPE 361

Query: 597  KPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRG 418
            KPDTED+A+++          KENSERHSQRCDVELKL VARKM+DEEGFYYPHNLDFRG
Sbjct: 362  KPDTEDEAKLKKWRWNLKAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRG 421

Query: 417  RAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAF 238
            RAYP+HPYLNHLGSDLCRG+LEFA+GRPLGKSGL WLKIHLANLYAGGVDKLSYDGRIAF
Sbjct: 422  RAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAF 481

Query: 237  IENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDG 58
             ENH+EDIFDSADRPLEGK WWLGAEDPFQCLA CINL EA+RS S E  ISH+PVHQDG
Sbjct: 482  TENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDG 541

Query: 57   SCNGLQHYAALGRDKLGAI 1
            SCNGLQHYAALGRDKLGAI
Sbjct: 542  SCNGLQHYAALGRDKLGAI 560


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Brachypodium distachyon]
          Length = 992

 Score =  878 bits (2269), Expect = 0.0
 Identities = 421/568 (74%), Positives = 480/568 (84%), Gaps = 3/568 (0%)
 Frame = -2

Query: 1695 MGRGKYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRD 1516
            MG  KY  LR+RQV+ ETEAW++AAKEY+E LADMCEHKLAPNLPY+K+LFLGWFEPLRD
Sbjct: 147  MGSSKYAALRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRD 206

Query: 1515 EIAAEQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHI 1336
            +I AEQE       RA + PYF  LPA+MMAVITMHKL  L+MTG G G V V+QAAC I
Sbjct: 207  QIIAEQELVGERGARASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 266

Query: 1335 GEAIENEARIHRFLEKTSKRNR---DKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQV 1165
            GEAIE+E RIH+FLEKT K+N    D   E+ + D + KEQ  LRKKVT LMKKQK+ QV
Sbjct: 267  GEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSD-IAKEQQRLRKKVTDLMKKQKIRQV 325

Query: 1164 RMIVKGQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTV 985
            R IVK QD ++PWGQDAHAKVGSRLIE+L+ETA+IQPPV QSA+  PD+RPAF H +RTV
Sbjct: 326  RNIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPDIRPAFTHEMRTV 385

Query: 984  KKEHQKFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYI 805
             +E QK  RRYG I+CDPL+RQGL RTA HMVIPYMPML+PP++W GYDKGAHL LPSY+
Sbjct: 386  TREQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYV 445

Query: 804  MRIHGSRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLV 625
            MR HG+RQQR+A+++AP +Q+Q IFEAL+TLG+TKWR+N KVLSIVDRIWSSGG LADLV
Sbjct: 446  MRTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLSIVDRIWSSGGRLADLV 505

Query: 624  DREDLPLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFY 445
            DR D+ LPEKPDTED+ E++          KENSERHSQRCDVELKL VARKM+DE GFY
Sbjct: 506  DRTDVALPEKPDTEDETELKKWRWNLRSVKKENSERHSQRCDVELKLAVARKMKDEVGFY 565

Query: 444  YPHNLDFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDK 265
            YPHNLDFRGRAYP+HPYLNHLGSDLCRG+LEF++GRPLG SGL WLKIHLANLYAGGVDK
Sbjct: 566  YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGDSGLCWLKIHLANLYAGGVDK 625

Query: 264  LSYDGRIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTI 85
            LSYDGRIAF ENH+EDIFDSA+RPLEGK WWLGAEDPFQCLA C++L EA+RSSS E  I
Sbjct: 626  LSYDGRIAFTENHLEDIFDSANRPLEGKRWWLGAEDPFQCLAVCMDLTEALRSSSPEAMI 685

Query: 84   SHLPVHQDGSCNGLQHYAALGRDKLGAI 1
            SH+PVHQDGSCNGLQHYAALGRDKLGAI
Sbjct: 686  SHIPVHQDGSCNGLQHYAALGRDKLGAI 713


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score =  877 bits (2265), Expect = 0.0
 Identities = 417/563 (74%), Positives = 479/563 (85%), Gaps = 2/563 (0%)
 Frame = -2

Query: 1683 KYQTLRRRQVKAETEAWDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAA 1504
            +Y +LRRRQ++ ETEAW++AA EY+E LADMCE KLAPNLPY+K+LFLGWFEPLRD+IA 
Sbjct: 134  RYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIAT 193

Query: 1503 EQERCMGVNKRAGYGPYFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAI 1324
            EQE       RA +GP+F  LPA+MMAVITMHKL  L+MTG G G V V+QAAC IGEAI
Sbjct: 194  EQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 253

Query: 1323 ENEARIHRFLEKTSKRN-RDKKGESNEGDT-VNKEQNSLRKKVTLLMKKQKLHQVRMIVK 1150
            E+E RI+RFLEKT K+N ++ + E   GDT +  EQ  LRKKVT LMKKQKL QVR IVK
Sbjct: 254  EHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAIEQQRLRKKVTDLMKKQKLRQVRNIVK 313

Query: 1149 GQDDSKPWGQDAHAKVGSRLIEILLETAYIQPPVDQSAEGPPDVRPAFRHHLRTVKKEHQ 970
             QD S+PWGQDAHAKVGSRLI++ + TA+IQPP  QS++G PD+RPAFRH +RT+ KE Q
Sbjct: 314  NQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQ 373

Query: 969  KFGRRYGYIECDPLVRQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHG 790
            K  RRYG I+CDPLVRQGL RTA HMVIPYMPML+PP+ W GYDKGAHL LPSY+MR HG
Sbjct: 374  KSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHG 433

Query: 789  SRQQRDAIRRAPGKQLQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDL 610
            +RQQRDA++RAP +Q+Q +FEALNTLG+TKWRVN +VLSIVDRIWS+GG LADLVDR D+
Sbjct: 434  ARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDV 493

Query: 609  PLPEKPDTEDDAEIRXXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNL 430
            P+PEKPDTED+  ++          K+NSERHSQRCDVELKL VARKM+DEEGFYYPHNL
Sbjct: 494  PVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNL 553

Query: 429  DFRGRAYPLHPYLNHLGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDG 250
            DFRGRAYP+HPYLNHLGSDLCRG+LEFA+GRPLGKSGL WLKIHLANLYA GVDKLSYDG
Sbjct: 554  DFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDG 613

Query: 249  RIAFIENHMEDIFDSADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPV 70
            RIAF ENH+E+IFDSADRPLEG+ WWLGAEDPFQCLA C+NL EA+RSSS E TISH+PV
Sbjct: 614  RIAFAENHLEEIFDSADRPLEGRRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPV 673

Query: 69   HQDGSCNGLQHYAALGRDKLGAI 1
            HQDGSCNGLQHYAALG+DKLGAI
Sbjct: 674  HQDGSCNGLQHYAALGKDKLGAI 696


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|731418092|ref|XP_010660553.1|
            PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|298204431|emb|CBI16911.3| unnamed protein product
            [Vitis vinifera]
          Length = 1035

 Score =  876 bits (2264), Expect = 0.0
 Identities = 446/727 (61%), Positives = 528/727 (72%), Gaps = 23/727 (3%)
 Frame = -2

Query: 2115 RKPNIMLRNIVRKASISSQNLTFSGHLCLASLRHISSFLGFSQNSHF--CPQNSILDLKV 1942
            +KP +M RNI ++A   +       +L    L    SFLGFSQ+  F    +    +   
Sbjct: 35   KKPTVMWRNIAKRAIPRAPRKCV--YLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSS 92

Query: 1941 SFKYRFSELAMLQTRELLPLVIDAKYPIASPSVSLTDS---------KGFATAANEICST 1789
                 FSE+   +  E    +   +  +  PS     +         K +A+ A  + ST
Sbjct: 93   CSSSGFSEMGFRRIGE----ISSREDAVGRPSFGCLRNQMGFSGFCPKSYASVAEAVSST 148

Query: 1788 DI---XXXXXXXXXXXXSKQRENSEQIH------LKITREMGRGKYQTLRRRQVKAETEA 1636
            D+                 ++E   Q++      LK+ R M +G+Y  LRRRQVK ETEA
Sbjct: 149  DVEEDVSASDEIQELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEA 208

Query: 1635 WDEAAKEYKEFLADMCEHKLAPNLPYMKTLFLGWFEPLRDEIAAEQERCMGVNKRAGYGP 1456
            W+ AAKEYKE L DMCE KLAPNLPYMK+LFLGWFEPLRD I  EQE C     +A Y P
Sbjct: 209  WELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAP 268

Query: 1455 YFGQLPAEMMAVITMHKLTSLMMTGEGSGGVPVVQAACHIGEAIENEARIHRFLEKTSKR 1276
            YF QLPA+MM+VITMHKL  L+MTG   G   VVQAAC IG+AIE E RIH FLEKT ++
Sbjct: 269  YFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRK 328

Query: 1275 --NRDKKGESNEGDTVNKEQNSLRKKVTLLMKKQKLHQVRMIVKGQDDSKPWGQDAHAKV 1102
               +DK  E    D V  EQ  LRKKVT LMKKQKLH  R IVKG D+SKPWG +A AKV
Sbjct: 329  KVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKV 388

Query: 1101 GSRLIEILLETAYIQPPVD-QSAEGPPDVRPAFRHHLRTVKKEHQKFGRRYGYIECDPLV 925
            GSRLIE+L++TAYIQPPVD Q A+ PPD+RPAF H  +TV +E +K GRR+G IECDPLV
Sbjct: 389  GSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLV 448

Query: 924  RQGLHRTAMHMVIPYMPMLVPPVNWAGYDKGAHLVLPSYIMRIHGSRQQRDAIRRAPGKQ 745
            ++GL RTA HMVIPY+PMLVPP+ W GYDKGAHL LPSY+MR HG+RQQR+A++RAP  Q
Sbjct: 449  KKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQ 508

Query: 744  LQPIFEALNTLGNTKWRVNNKVLSIVDRIWSSGGCLADLVDREDLPLPEKPDTEDDAEIR 565
            L+P+FEALNTLGNTKWR+N ++  +VDRIW+ GGCLADLVDR D+PLPEKPDTED+A++R
Sbjct: 509  LEPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLR 568

Query: 564  XXXXXXXXXXKENSERHSQRCDVELKLVVARKMRDEEGFYYPHNLDFRGRAYPLHPYLNH 385
                      K NSERHSQRCD+ELKL VARKM+DE+GF+YPHNLDFRGRAYP+HPYLNH
Sbjct: 569  KWKWKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNH 628

Query: 384  LGSDLCRGILEFAKGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRIAFIENHMEDIFDS 205
            LGSDLCRGILEFA+GRPLG SGLHWLKIHLANL+AGGVDKLS++GRI F ENH++DIFDS
Sbjct: 629  LGSDLCRGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDS 688

Query: 204  ADRPLEGKHWWLGAEDPFQCLAACINLAEAVRSSSQENTISHLPVHQDGSCNGLQHYAAL 25
            ADRPLEGK WWL AEDPFQ LAACINL+EA+RSSS E TISH+PVHQDGSCNGLQHYAAL
Sbjct: 689  ADRPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAAL 748

Query: 24   GRDKLGA 4
            GRD+LGA
Sbjct: 749  GRDQLGA 755