BLASTX nr result
ID: Anemarrhena21_contig00026686
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00026686
(1674 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion)... 207 3e-64
ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera... 157 5e-38
emb|CBL54114.1| hypothetical protein (mitochondrion) [Beta vulga... 150 6e-38
ref|NP_064020.1| orf348 gene product (mitochondrion) [Beta vulga... 150 6e-37
ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygr... 145 7e-36
ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus... 151 2e-33
gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota] 130 7e-32
ref|NP_064084.1| orf217 gene product (mitochondrion) [Beta vulga... 145 9e-32
emb|CBX33250.1| hypothetical protein [Beta vulgaris subsp. marit... 145 9e-32
dbj|BAD66791.1| orf598 (mitochondrion) [Beta vulgaris subsp. vul... 145 9e-32
gb|EPS74139.1| hypothetical protein M569_00616, partial [Genlise... 142 1e-30
ref|NP_862323.1| hypothetical protein BrnaMpl_p1 [Brassica napus... 79 5e-27
gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris] 127 3e-26
gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris] 123 4e-25
emb|CAA71809.1| RNA polymerase [Beta vulgaris subsp. maritima] 116 5e-23
emb|CAQ52967.1| unnamed protein product (mitochondrion) [Lolium ... 113 5e-22
emb|CAQ52970.1| unnamed protein product (mitochondrion) [Lolium ... 112 9e-22
emb|CAQ52964.1| unnamed protein product (mitochondrion) [Lolium ... 110 4e-21
ref|YP_173358.1| orf297a [Nicotiana tabacum] gi|56806520|dbj|BAD... 90 2e-19
ref|YP_588349.1| hypothetical protein ZeamMp088 [Zea mays subsp.... 102 7e-19
>ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase
(mitochondrion) [Phoenix dactylifera]
Length = 875
Score = 207 bits (528), Expect(2) = 3e-64
Identities = 104/148 (70%), Positives = 118/148 (79%)
Frame = +3
Query: 9 QDQFYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDK 188
+D + +A LC+EF KYPDI NL+ LINLIGWFCS LDKPV YSI Y TTVQDYMR
Sbjct: 583 KDSYGLAVLCYEFLSLKYPDIVNLLNLINLIGWFCSKLDKPVFYSIPYITTVQDYMRSKA 642
Query: 189 EVIWVYDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNG 368
IW+YDRV +KRRRVTLRVPT RD RKT+V+TCVNFIHQKDA+IAMKVVE+L L
Sbjct: 643 TDIWLYDRVSKKRRRVTLRVPTPDRDSRKTKVATCVNFIHQKDAYIAMKVVEELLLIQG- 701
Query: 369 EAPVYTVHDNFITTSVYASEVPKIYTKV 452
APVYTVHDNFITT++YA VP+IYT V
Sbjct: 702 -APVYTVHDNFITTALYARMVPEIYTGV 728
Score = 67.8 bits (164), Expect(2) = 3e-64
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 29/128 (22%)
Frame = +2
Query: 467 IENFIHKNLIRLAKG---ELSNEP--------YSDRINSNPIKYLRDLLED--------- 586
I FI++NLI +LS+ P +R+ NP Y+ +ED
Sbjct: 739 INQFINRNLILPDFPFYMDLSDSPEEKASARKIEERLPKNPSNYVFHWVEDPIPGEDIRY 798
Query: 587 ----LVPKNLRRTDQEKWVHKMEETVSCYEVYLNTVCGAV-----LDSGMHHADEEKWNE 739
L+PK+L +T++ KW + TVSCYE Y NTVCG D G HA EKWNE
Sbjct: 799 FLDYLMPKDLSKTERIKWDRNISATVSCYEKYCNTVCGEAHFKMPSDGGKRHA--EKWNE 856
Query: 740 FQSHLKSW 763
F++ L W
Sbjct: 857 FKADLSRW 864
>ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
gi|209954148|emb|CAQ77581.1| DNA-dependent RNA
polymerase. This is a family of single chain RNA
polymerases; pfam00940 [Vitis vinifera]
gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase
[Vitis vinifera]
Length = 975
Score = 157 bits (398), Expect(2) = 5e-38
Identities = 79/143 (55%), Positives = 102/143 (71%)
Frame = +3
Query: 24 IAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWV 203
+A+ + F+K YP I NLM LI I W SA+D+PV YS+ FTTVQDYM+ IWV
Sbjct: 726 LAKKIYIFYKTYYPGIVNLMDLIRNISWLVSAMDRPVLYSVSLFTTVQDYMKSKTVNIWV 785
Query: 204 YDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEAPVY 383
YDR+ +KRR+VTLR+P+ RD+RKT +ST NFIHQKDAFIAM +++ + + APVY
Sbjct: 786 YDRIHRKRRQVTLRIPSGDRDRRKTHMSTFANFIHQKDAFIAMHMIKYM---VSENAPVY 842
Query: 384 TVHDNFITTSVYASEVPKIYTKV 452
TVHDNFITT+ YAS + + Y V
Sbjct: 843 TVHDNFITTAPYASYISRYYVLV 865
Score = 30.0 bits (66), Expect(2) = 5e-38
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 554 PIKYLRDLLEDLVPKNLRRTDQEKWVHKMEETVSCYEVYL 673
P L + LE ++PKNL ++ + W K+ YE Y+
Sbjct: 898 PNHILLNSLESIIPKNLNKSKKLIWAKKIYSVCIAYEKYI 937
>emb|CBL54114.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 348
Score = 150 bits (380), Expect(2) = 6e-38
Identities = 72/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Frame = +3
Query: 6 FQDQFYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRD 185
F++ F +A C +FW+E Y ++ NL+RLI L+GWF S + VHY +F T Q+YM +D
Sbjct: 76 FKESFLLASPCFKFWREYYTEMENLIRLIRLVGWFASTCESSVHYVTPFFCTSQNYMVKD 135
Query: 186 KEVIWVYDRVCQKRRRVTLRVPTL-YRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKT 362
+IWVYD+V +K+R+VTLR+ + RD++KT+VST VNFIHQKDA IAM V+ +L
Sbjct: 136 SHIIWVYDKVNRKKRKVTLRLSSRDKRDRKKTEVSTFVNFIHQKDALIAMGVISKL---Y 192
Query: 363 NGEAPVYTVHDNFITTSVYASEVPKIYTKV 452
P+YTVH+NFI+ + + +P IY +V
Sbjct: 193 EVNEPIYTVHENFISNPLVSVHLPYIYLEV 222
Score = 36.6 bits (83), Expect(2) = 6e-38
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Frame = +2
Query: 467 IENFIHKNLIRLAKGE--------LSNEPYSDRINSNPIKYLRDLLEDLVPKNLRRTDQE 622
I +FI++NL+RLAK L + +++ + + + + L ++P+ + + D+E
Sbjct: 233 INSFIYENLVRLAKDRGDDKEILGLEEKRFTEMVLTEDL--IDQLFACILPETI-KMDKE 289
Query: 623 K---WVHKMEETVSCYEVYLNTVCGAVLDSGMHHADEEKWNEFQSHLKSWEK 769
K W + + Y Y VCG SG + + KWN+ H+ WEK
Sbjct: 290 KLKVWRANISRFKTFYFGYTRFVCGEDPSSG---SKDMKWND---HVIKWEK 335
>ref|NP_064020.1| orf348 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|9838498|ref|NP_064110.1| orf348 gene product
(mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|323435080|ref|YP_004222298.1| hypothetical protein
BevumaM_p060 [Beta vulgaris subsp. maritima]
gi|323435134|ref|YP_004222352.1| hypothetical protein
BevumaM_p119 [Beta vulgaris subsp. maritima]
gi|346683171|ref|YP_004842103.1| hypothetical protein
BemaM_p056 [Beta macrocarpa]
gi|346683225|ref|YP_004842157.1| hypothetical protein
BemaM_p113 [Beta macrocarpa] gi|9049321|dbj|BAA99331.1|
orf348 (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|9087360|dbj|BAA99504.1| orf348 (mitochondrion) [Beta
vulgaris subsp. vulgaris] gi|54606797|dbj|BAD66820.1|
orf348 (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|317905585|emb|CBJ13997.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|317905633|emb|CBJ14033.1|
hypothetical protein [Beta vulgaris subsp. maritima]
gi|319439813|emb|CBJ17524.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|319439867|emb|CBJ17572.1|
hypothetical protein [Beta vulgaris subsp. maritima]
gi|320148019|emb|CBJ20685.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|345500089|emb|CBX24905.1|
hypothetical protein [Beta macrocarpa]
gi|345500143|emb|CBX24962.1| hypothetical protein [Beta
macrocarpa]
Length = 348
Score = 150 bits (380), Expect(2) = 6e-37
Identities = 72/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Frame = +3
Query: 6 FQDQFYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRD 185
F++ F +A C +FW+E Y ++ NL+RLI L+GWF S + VHY +F T Q+YM +D
Sbjct: 76 FKESFLLASPCFKFWREYYTEMENLIRLIRLVGWFASTCESSVHYVTPFFCTSQNYMVKD 135
Query: 186 KEVIWVYDRVCQKRRRVTLRVPTL-YRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKT 362
+IWVYD+V +K+R+VTLR+ + RD++KT+VST VNFIHQKDA IAM V+ +L
Sbjct: 136 SHIIWVYDKVNRKKRKVTLRLSSRDKRDRKKTEVSTFVNFIHQKDALIAMGVISKL---Y 192
Query: 363 NGEAPVYTVHDNFITTSVYASEVPKIYTKV 452
P+YTVH+NFI+ + + +P IY +V
Sbjct: 193 EVNEPIYTVHENFISNPLVSVHLPYIYLEV 222
Score = 33.1 bits (74), Expect(2) = 6e-37
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Frame = +2
Query: 467 IENFIHKNLIRLAKGE--------LSNEPYSDRINSNPIKYLRDLLEDLVPKNLRRTDQE 622
I +FI++NL+RLAK L + +++ + + + + L ++P+ + + D+E
Sbjct: 233 INSFIYENLVRLAKDRGDDKEILGLEEKRFTEMVLTEDL--IDQLFACILPETI-KMDKE 289
Query: 623 K---WVHKMEETVSCYEVYLNTVCGAVLDSGMHHADEEKWNEFQSHLKSWEK 769
K W + + Y Y VC SG + + KWN+ H+ WEK
Sbjct: 290 KLKVWRANISRFKTFYFGYTRFVCCEDPSSG---SKDMKWND---HVIKWEK 335
>ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygrometrica]
gi|340549502|gb|AEK53323.1| hypothetical protein
(mitochondrion) [Boea hygrometrica]
Length = 585
Score = 145 bits (366), Expect(2) = 7e-36
Identities = 73/143 (51%), Positives = 98/143 (68%)
Frame = +3
Query: 18 FYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVI 197
F +A +C +FWK KY + L+RLI IGW SA D+ V+Y+ TVQ+Y + + I
Sbjct: 332 FELASICFKFWKTKYSHMECLIRLIRHIGWIVSASDRIVNYNAKNLITVQNYTKIEPINI 391
Query: 198 WVYDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEAP 377
W+YD++ +KRRRVTLRV + +D RKT+ ST VNFIHQKDA IAM VVE L +K + P
Sbjct: 392 WIYDKMNKKRRRVTLRVSSDKKDTRKTETSTFVNFIHQKDANIAMNVVESL-MKNYNDCP 450
Query: 378 VYTVHDNFITTSVYASEVPKIYT 446
+YTVHDNFITT+ Y + + Y+
Sbjct: 451 IYTVHDNFITTAKYNKRLSEFYS 473
Score = 35.0 bits (79), Expect(2) = 7e-36
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Frame = +2
Query: 467 IENFIHKNLIR----LAKGELSNEPYSDRINSNPIKYLRDLLEDLVPKNLRRTDQEKWVH 634
I +FI KN+I K E++N+P D L+ + +P NL ++ W
Sbjct: 486 INSFIWKNVILPPILAGKAEVTNKPDWDSWVFTREALFYYLIAN-IPDNLSYQMKKTWNE 544
Query: 635 KMEETVSCYEVYLNTVCGAVLDSGMHHADEEKWNEFQSHLK 757
++ +S YE Y+ +CG ++ + H E KWNEF+ ++
Sbjct: 545 RISGVISSYENYI--LCG---NTFIGH--ERKWNEFKGKVR 578
>ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus]
gi|23200585|dbj|BAC16369.1| orf6 [Brassica napus]
Length = 1078
Score = 151 bits (381), Expect = 2e-33
Identities = 77/140 (55%), Positives = 101/140 (72%)
Frame = +3
Query: 6 FQDQFYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRD 185
++ F IA C EFW+ K+PDI NLM+L+NL+GWF S ++KPV Y FTT Q Y +
Sbjct: 726 YKAYFKIANDCLEFWRMKFPDIVNLMKLLNLVGWFKSQMNKPVLYGHMLFTTHQFYTKSV 785
Query: 186 KEVIWVYDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTN 365
K I +YDR +KR RVTL++PT RD RK+QVSTCVNFIHQ+DA IAM VV++L + +
Sbjct: 786 KTQISIYDRKTKKRHRVTLKLPTPERDIRKSQVSTCVNFIHQRDACIAMLVVDKLN-RYH 844
Query: 366 GEAPVYTVHDNFITTSVYAS 425
A +YTVHDNFIT+ Y++
Sbjct: 845 EHASMYTVHDNFITSPYYSN 864
>gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota]
Length = 999
Score = 130 bits (326), Expect(2) = 7e-32
Identities = 65/140 (46%), Positives = 88/140 (62%)
Frame = +3
Query: 24 IAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWV 203
+AQ+ ++F+K KY + LM +I IGWF S PV Y + FTT+QDY + + IWV
Sbjct: 738 VAQVFYDFFKVKYSRLNCLMNMIQNIGWFSSERGNPVCYKVPLFTTIQDYRKSSETHIWV 797
Query: 204 YDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEAPVY 383
Y + R++VTL +P+ RD RKT ST VNFIHQKDA +AM VV+ L + P+Y
Sbjct: 798 YSKSTHSRKKVTLSIPSEERDSRKTLSSTFVNFIHQKDACLAMNVVKFLLSDPSIPIPIY 857
Query: 384 TVHDNFITTSVYASEVPKIY 443
TVHDNFIT + +P +Y
Sbjct: 858 TVHDNFITIADCCFSLPLLY 877
Score = 37.0 bits (84), Expect(2) = 7e-32
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Frame = +2
Query: 554 PIKYLRDLLEDLVPKNLRRTDQEKWVHKMEETVSCYEVYLNTVCG-----------AVLD 700
P + L LL + +P R + W K V+ Y Y+N VCG A L
Sbjct: 915 PSRELESLLNNCIPTEFRNK-KNLWNKKKTIIVNSYNTYVNAVCGPIDSDTTNAPVATLL 973
Query: 701 SGMHHADEEKWNEFQSHL 754
+ + A E KW F+ L
Sbjct: 974 ATRYEAHERKWESFKKEL 991
>ref|NP_064084.1| orf217 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|323435106|ref|YP_004222324.1| hypothetical protein
BevumaM_p089 [Beta vulgaris subsp. maritima]
gi|346683198|ref|YP_004842130.1| hypothetical protein
BemaM_p085 [Beta macrocarpa] gi|9087333|dbj|BAA99477.1|
orf217 (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|317905660|emb|CBJ14056.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|319439839|emb|CBJ17547.1|
hypothetical protein [Beta vulgaris subsp. maritima]
gi|345500116|emb|CBX24934.1| hypothetical protein [Beta
macrocarpa] gi|384939138|emb|CBL51985.1| hypothetical
protein (mitochondrion) [Beta vulgaris subsp. maritima]
Length = 217
Score = 145 bits (366), Expect = 9e-32
Identities = 71/146 (48%), Positives = 104/146 (71%), Gaps = 1/146 (0%)
Frame = +3
Query: 18 FYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVI 197
F+IA LC +FWKEK+ + +L+ +I L+GWF ++ +PV YS +F T QDYM + +
Sbjct: 30 FHIASLCFKFWKEKFAHMDHLIGIIRLLGWFAASCGRPVLYSTKFFNTSQDYMVMEPYSL 89
Query: 198 WVYDRVCQKRRRVTLRVPTL-YRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEA 374
WVYD++ +++R+VTL V + RD++KT++ST VNFIHQKDAFIAM V+E ++ +G
Sbjct: 90 WVYDKLKKRKRKVTLSVSSQDKRDRKKTEISTFVNFIHQKDAFIAMSVIED--MRKDG-Y 146
Query: 375 PVYTVHDNFITTSVYASEVPKIYTKV 452
P+YTVHDN I T + ++P IY KV
Sbjct: 147 PIYTVHDNLICTITKSQDLPGIYRKV 172
>emb|CBX33250.1| hypothetical protein [Beta vulgaris subsp. maritima]
Length = 217
Score = 145 bits (366), Expect = 9e-32
Identities = 71/146 (48%), Positives = 104/146 (71%), Gaps = 1/146 (0%)
Frame = +3
Query: 18 FYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVI 197
F+IA LC +FWKEK+ + +L+ +I L+GWF ++ +PV YS +F T QDYM + +
Sbjct: 30 FHIASLCFKFWKEKFAHMDHLIGIIRLLGWFAASCGRPVLYSTKFFNTSQDYMVMEPYSL 89
Query: 198 WVYDRVCQKRRRVTLRVPTL-YRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEA 374
WVYD++ +++R+VTL V + RD++KT++ST VNFIHQKDAFIAM V+E ++ +G
Sbjct: 90 WVYDKLKKRKRKVTLSVSSQDKRDRKKTEISTFVNFIHQKDAFIAMSVIED--MRKDG-Y 146
Query: 375 PVYTVHDNFITTSVYASEVPKIYTKV 452
P+YTVHDN I T + ++P IY KV
Sbjct: 147 PIYTVHDNLICTITKSQDLPGIYRKV 172
>dbj|BAD66791.1| orf598 (mitochondrion) [Beta vulgaris subsp. vulgaris]
Length = 598
Score = 145 bits (366), Expect = 9e-32
Identities = 71/146 (48%), Positives = 104/146 (71%), Gaps = 1/146 (0%)
Frame = +3
Query: 18 FYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVI 197
F+IA LC +FWKEK+ + +L+ +I L+GWF ++ +PV YS +F T QDYM + +
Sbjct: 411 FHIASLCFKFWKEKFAHMDHLIGIIRLLGWFAASCGRPVLYSTKFFNTSQDYMVMEPYSL 470
Query: 198 WVYDRVCQKRRRVTLRVPTL-YRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEA 374
WVYD++ +++R+VTL V + RD++KT++ST VNFIHQKDAFIAM V+E ++ +G
Sbjct: 471 WVYDKLKKRKRKVTLSVSSQDKRDRKKTEISTFVNFIHQKDAFIAMSVIED--MRKDG-Y 527
Query: 375 PVYTVHDNFITTSVYASEVPKIYTKV 452
P+YTVHDN I T + ++P IY KV
Sbjct: 528 PIYTVHDNLICTITKSQDLPGIYRKV 553
>gb|EPS74139.1| hypothetical protein M569_00616, partial [Genlisea aurea]
Length = 343
Score = 142 bits (357), Expect = 1e-30
Identities = 71/118 (60%), Positives = 84/118 (71%)
Frame = +3
Query: 99 IGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWVYDRVCQKRRRVTLRVPTLYRDKRKT 278
I +FCS +D+PV YS Y T QDYM KE I VY+++ +KRRRVT+ +PT RD RKT
Sbjct: 209 ISYFCSLMDQPVKYSTPYLITKQDYMSIKKEYISVYEKMTKKRRRVTINIPTDKRDIRKT 268
Query: 279 QVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEAPVYTVHDNFITTSVYASEVPKIYTKV 452
Q STC NFIHQKDA+IAMKVVE L + P+YTVHDNFITT YA V IYTK+
Sbjct: 269 QTSTCANFIHQKDAYIAMKVVESLLRQ---GVPIYTVHDNFITTPAYAKRVTDIYTKI 323
>ref|NP_862323.1| hypothetical protein BrnaMpl_p1 [Brassica napus]
gi|23200580|dbj|BAC16364.1| orf5 [Brassica napus]
Length = 990
Score = 79.3 bits (194), Expect(2) = 5e-27
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Frame = +1
Query: 865 YLNHLKQIIERE-KCWNPYSGIIKAEYRFKSPYLLCGDYDIIVLAVIRLLIMYVYNKTKF 1041
Y+N L KC NPY G+I+A F Y D +I+ LAV++LL+ YVYN+
Sbjct: 88 YINRLNYYYNTNMKCVNPYDGLIEAYISFNHKYPKYSDIEILSLAVMKLLLKYVYNQ-NI 146
Query: 1042 AYAKFTIGYNIMQISTSVDFSYTIGRAIELNDNGG---PNMDVIYMIYKYVLQAAEKYEN 1212
KFT+GY + I+ SY + ++I+L + G P+ + + + +L AEKY++
Sbjct: 147 DGGKFTVGYTMSGINID-RISYILDKSIDLRNTNGEMKPSYGLYMKLIQLMLINAEKYQS 205
Query: 1213 DVLKGLSIRVYLLGMQEKE-----YSLSYEEIDPKILSLIHSG--IGVGDEPQEAKPMGR 1371
+ + IRVY +++ L +E++ + ++ S + + P + +
Sbjct: 206 SNIYDIRIRVYYQSKNKEQSHINISGLEEKEVNDLLFNIFQSEDFLSIKSSPPIVQSFKK 265
Query: 1372 KRRYPDHVTSL 1404
KR P ++T +
Sbjct: 266 KREIPKYITKV 276
Score = 71.6 bits (174), Expect(2) = 5e-27
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Frame = +2
Query: 1397 LHSNQRVRKGSLADTETVPIND-----VHVPYAAGFLVVNPDEDVGSKPDYSIETYFSKD 1561
L+ +++ +AD ET+ + HVPYAAGFL++ PD DVGS P + E+Y+S+D
Sbjct: 277 LNKTVKMKAFIVADIETIMYENDKGIHYHVPYAAGFLLIQPDVDVGSIPIHKFESYYSED 336
Query: 1562 HMIVKPEFTERSKRMLFDFLERLAVVASSSKIRTVYF 1672
+ F ERS M+ F+ER++ V+ + I+++YF
Sbjct: 337 --LYHDTFLERSDTMMVRFIERISNVSKNQNIKSIYF 371
>gb|AFI44306.1| RNA polymerase (mitochondrion) [Silene vulgaris]
Length = 1053
Score = 127 bits (319), Expect = 3e-26
Identities = 61/145 (42%), Positives = 98/145 (67%)
Frame = +3
Query: 18 FYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVI 197
F +A+LC+ FW + Y D+ + + LI L+G C++L++PV ++ +F T QDY + + +
Sbjct: 798 FKLAKLCYAFWHDTYNDMYSFIDLIGLVGRVCASLERPVLFNTKFFDTHQDYKKVESCSV 857
Query: 198 WVYDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEAP 377
V+D++ +K R V L VP+ RDKRK++ +T VNFIHQ+DA IAM V E + + + P
Sbjct: 858 RVFDKINRKNRTVNLSVPSDVRDKRKSRAATFVNFIHQRDAQIAMSVAE---IAGSYQIP 914
Query: 378 VYTVHDNFITTSVYASEVPKIYTKV 452
+YTVHDNFI+ ++ + ++P IY V
Sbjct: 915 LYTVHDNFISNTINSKKLPNIYCHV 939
>gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris]
Length = 371
Score = 123 bits (309), Expect = 4e-25
Identities = 59/145 (40%), Positives = 97/145 (66%)
Frame = +3
Query: 18 FYIAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVI 197
F +A+LC+ FW + Y + + + LI L+G C++L++PV ++ ++ T QDY + + +
Sbjct: 116 FKLAKLCYAFWHDTYNHMYSFIDLIGLVGRVCASLERPVLFNTKFYDTHQDYKKVESCSV 175
Query: 198 WVYDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEAP 377
V+D++ +K R V L VP+ RDKRK++ +T VNFIHQ+DA IAM V E + + + P
Sbjct: 176 RVFDKINRKNRTVNLSVPSDVRDKRKSRAATFVNFIHQRDAKIAMSVAE---IAGSYQIP 232
Query: 378 VYTVHDNFITTSVYASEVPKIYTKV 452
+YTVHDNFI+ ++ + ++P IY V
Sbjct: 233 LYTVHDNFISNTINSQKLPNIYCHV 257
>emb|CAA71809.1| RNA polymerase [Beta vulgaris subsp. maritima]
Length = 1014
Score = 116 bits (291), Expect = 5e-23
Identities = 59/140 (42%), Positives = 88/140 (62%)
Frame = +3
Query: 24 IAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWV 203
++ LC +FWK++Y + + + LI L+G C++L++PV YS F T QDY + + + V
Sbjct: 759 LSTLCFKFWKDRYSGMNSFIELIRLVGRVCASLERPVVYSTPLFNTSQDYKKMESCSVRV 818
Query: 204 YDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGEAPVY 383
+D ++RR VTL P+ RDK K++ ST VNFIHQKDA IA++V +L P+Y
Sbjct: 819 FDSKERRRRSVTLSFPSNVRDKMKSRASTFVNFIHQKDAQIAIEVA---SLANELNIPLY 875
Query: 384 TVHDNFITTSVYASEVPKIY 443
TVHDNFI+ + +P Y
Sbjct: 876 TVHDNFISNTELCHYMPLFY 895
>emb|CAQ52967.1| unnamed protein product (mitochondrion) [Lolium perenne]
Length = 1272
Score = 113 bits (282), Expect = 5e-22
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Frame = +3
Query: 24 IAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWV 203
+ ++C +FW Y D+ NLM LI + + LD + Y ++F T+Q+Y + +++I V
Sbjct: 934 LVEICFQFWDHYYNDVNNLMELIQSVCMITTKLDSNIIYGNNWFKTIQNYCKTKEQIISV 993
Query: 204 -YDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGE--- 371
YD +KR VT++ T +D RKT +ST NFIHQ+DA + + V+ ++ N
Sbjct: 994 IYDSTRKKRSGVTVKENTDIKDPRKTVISTFANFIHQRDAVMVLNVIREIISVENKSLKE 1053
Query: 372 -APVYTVHDNFITTSVYASEVPKIY 443
P+YTVHDNFITT +AS++P+ Y
Sbjct: 1054 YIPIYTVHDNFITTIEHASKIPQFY 1078
>emb|CAQ52970.1| unnamed protein product (mitochondrion) [Lolium perenne]
Length = 1272
Score = 112 bits (280), Expect = 9e-22
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Frame = +3
Query: 24 IAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWV 203
+ ++C +FW Y D+ NLM LI + + LD + Y + F T+Q+Y + +++I V
Sbjct: 934 LVEICFQFWDHYYKDVNNLMELIQSVCMITTKLDSNIIYGNNLFKTIQNYCKTKEQIISV 993
Query: 204 -YDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGE--- 371
YD +KR VT++ T +D RKT +ST NFIHQ+DA + + V+ ++ N
Sbjct: 994 IYDSTRRKRSGVTVKENTDIKDPRKTVISTFANFIHQRDAVMVLNVIREIISVENKSLKE 1053
Query: 372 -APVYTVHDNFITTSVYASEVPKIY 443
P+YTVHDNFITT +AS++P+ Y
Sbjct: 1054 YIPIYTVHDNFITTIEHASKIPQFY 1078
>emb|CAQ52964.1| unnamed protein product (mitochondrion) [Lolium perenne]
Length = 1284
Score = 110 bits (274), Expect = 4e-21
Identities = 55/145 (37%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Frame = +3
Query: 24 IAQLCHEFWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWV 203
+ ++C +FW Y D+ NLM LI + + LD + Y + F T+Q+Y + +++I V
Sbjct: 946 LVEICFQFWDHYYKDVNNLMELIQSVCMITTKLDSNIIYGNNLFKTIQNYCKTKEQIISV 1005
Query: 204 -YDRVCQKRRRVTLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLTLKTNGE--- 371
YD +KR VT++ T +D RKT +ST NFIHQ+DA + + V+ ++ N
Sbjct: 1006 IYDSTRRKRSGVTVKENTDIKDPRKTVISTFANFIHQRDAVMVLNVIREIISVENQSLKE 1065
Query: 372 -APVYTVHDNFITTSVYASEVPKIY 443
P+YTVHDNFITT +A ++P+ Y
Sbjct: 1066 YIPIYTVHDNFITTIEHAYKIPQFY 1090
>ref|YP_173358.1| orf297a [Nicotiana tabacum] gi|56806520|dbj|BAD83421.1| orf297a
(mitochondrion) [Nicotiana tabacum]
Length = 297
Score = 90.1 bits (222), Expect(2) = 2e-19
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +2
Query: 1430 LADTETVPINDVHVPYAAGFLVVNPDEDVGSKPDYSIETYFSKDHMIVKPEFTERSKRML 1609
+AD E +DVHVP A GFLVV P ED+ SK +Y IETYFS+D+ +F +RS+RM+
Sbjct: 37 VADIEAALHDDVHVPCAVGFLVVKPGEDLASKSEYYIETYFSEDNDFSISDFKKRSERMM 96
Query: 1610 FDFLERLAVVASSSK-IRTVYF 1672
DF+ERLA V S K IRTVYF
Sbjct: 97 LDFIERLAAVVSDEKEIRTVYF 118
Score = 35.4 bits (80), Expect(2) = 2e-19
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 1333 VGDEPQEAKPMGRKRRYPDHVTSLKPTSK-KRQP 1431
+ DEP E MG+K R PDH+ +LK K KR P
Sbjct: 1 MSDEPVEVVAMGKKSRRPDHIPALKAIKKIKRSP 34
>ref|YP_588349.1| hypothetical protein ZeamMp088 [Zea mays subsp. mays]
gi|40794997|gb|AAR91041.1| hypothetical protein
(mitochondrion) [Zea mays]
Length = 1159
Score = 102 bits (255), Expect = 7e-19
Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 7/140 (5%)
Frame = +3
Query: 45 FWKEKYPDIANLMRLINLIGWFCSALDKPVHYSIDYFTTVQDYMRRDKEVIWV-YDRVCQ 221
+WKE + + +LM LIN + WF + DKPV YS Y+ T+Q Y RR + + + Y+
Sbjct: 853 YWKENFGKMKDLMDLINYVSWFGAGQDKPVVYSTPYWVTLQTYKRRKRVKMKIQYETTKN 912
Query: 222 KRRRV-----TLRVPTLYRDKRKTQVSTCVNFIHQKDAFIAMKVVEQLT-LKTNGEAPVY 383
+ V + VP D RK+ ST NFIHQKDAF A+++VE + L+ P+Y
Sbjct: 913 NEKEVKTTSAKMLVPLNDNDIRKSSTSTFANFIHQKDAFTAIQLVEFINKLENASSIPIY 972
Query: 384 TVHDNFITTSVYASEVPKIY 443
VHDNFIT YA +P +Y
Sbjct: 973 AVHDNFITMPEYAWILPTLY 992