BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00023829
         (370 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_654205.1| photosystem II M protein (chloroplast) [Oryza s...    87   2e-17
ref|XP_002888353.1| hypothetical protein ARALYDRAFT_893970 [Arab...    67   4e-09
gb|AFK38374.1| unknown [Medicago truncatula]                           63   9e-08
gb|AAS46110.1| photosystem II M protein (chloroplast) [Oryza sat...    44   1e-07

>ref|YP_654205.1| photosystem II M protein (chloroplast) [Oryza sativa Indica Group]
           gi|42795478|gb|AAS46045.1| photosystem II M protein
           (chloroplast) [Oryza sativa Indica Group]
          Length = 68

 Score = 87.4 bits (215), Expect(2) = 2e-17
 Identities = 41/61 (67%), Positives = 43/61 (70%)
 Frame = -3

Query: 293 PLNLQESNFSSLWD*IPSYCETKKRRLDYGSQYSRTYCYCTVHSSSYCFFTYHLCKNSQS 114
           PL      F S WD IPSYCE K+    YGSQYSR YCYC VHSSSYC FTY+LCKNSQ 
Sbjct: 11  PLEFTGYPFPSPWDYIPSYCEKKR---GYGSQYSRIYCYCIVHSSSYCLFTYYLCKNSQP 67

Query: 113 K 111
           K
Sbjct: 68  K 68



 Score = 28.1 bits (61), Expect(2) = 2e-17
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 324 LIQYHQDAIHPIEFTGVKF 268
           +IQY+Q+A  P+EFTG  F
Sbjct: 1   MIQYYQNASPPLEFTGYPF 19


>ref|XP_002888353.1| hypothetical protein ARALYDRAFT_893970 [Arabidopsis lyrata subsp.
           lyrata] gi|297334194|gb|EFH64612.1| hypothetical protein
           ARALYDRAFT_893970 [Arabidopsis lyrata subsp. lyrata]
          Length = 120

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 31/53 (58%), Positives = 41/53 (77%)
 Frame = +2

Query: 74  LIIQVLFKFKLIILTDCFYIDDK*KSSRN*NEQCSSNKCENIDFHNLIFFFLF 232
           L+I +   FKLIILT+ FY++ K KSSRN NE+C SNKC+NI FHNLI ++ +
Sbjct: 57  LLIAIFHLFKLIILTNGFYVNYKQKSSRNENEECGSNKCKNIYFHNLIVYYYY 109


>gb|AFK38374.1| unknown [Medicago truncatula]
          Length = 52

 Score = 62.8 bits (151), Expect = 9e-08
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = -3

Query: 227 KKRRLDYGSQYSRTYCYCTVHSSSYCFFTYHLCKNSQSK 111
           +++  DYGSQYSR Y YCT+HSSSYC FTY+L KN +SK
Sbjct: 14  ERKHRDYGSQYSRIYSYCTLHSSSYCLFTYNLRKNGKSK 52


>gb|AAS46110.1| photosystem II M protein (chloroplast) [Oryza sativa Japonica
           Group] gi|42795608|gb|AAS46173.1| photosystem II M
           protein (chloroplast) [Oryza sativa Japonica Group]
           gi|290790563|gb|ADD62823.1| photosystem II protein M
           (chloroplast) [Oryza sativa Japonica Group]
           gi|290790632|gb|ADD62891.1| photosystem II protein M
           (chloroplast) [Oryza meridionalis]
           gi|290790701|gb|ADD62959.1| photosystem II protein M
           (chloroplast) [Oryza australiensis]
           gi|552954465|gb|AGY48933.1| photosystem II reaction
           center protein M (chloroplast) [Oryza rufipogon]
          Length = 69

 Score = 44.3 bits (103), Expect(3) = 1e-07
 Identities = 26/41 (63%), Positives = 28/41 (68%)
 Frame = -1

Query: 229 QKKED*IMEVNXXXXXXXXXXXLVPTAFLLIIYVKTVSQND 107
           +KKE  +MEVN           LVPTAFLLIIYVKTVSQND
Sbjct: 31  EKKE--VMEVNILAFIATALFILVPTAFLLIIYVKTVSQND 69



 Score = 29.3 bits (64), Expect(3) = 1e-07
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 293 PLNLQESNFSSLWD*IPSYCETKK 222
           PL      F S WD IPSYCE K+
Sbjct: 11  PLEFTGYPFPSPWDYIPSYCEKKE 34



 Score = 28.1 bits (61), Expect(3) = 1e-07
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 324 LIQYHQDAIHPIEFTGVKF 268
           +IQY+Q+A  P+EFTG  F
Sbjct: 1   MIQYYQNASPPLEFTGYPF 19