BLASTX nr result
ID: Anemarrhena21_contig00022520
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00022520
(1302 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010927194.1| PREDICTED: RNA pseudouridine synthase 3, mit... 612 0.0
ref|XP_008807168.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour... 614 0.0
ref|XP_009401551.1| PREDICTED: RNA pseudouridine synthase 3, mit... 592 0.0
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo... 586 e-173
ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group] g... 586 e-173
ref|XP_008677489.1| PREDICTED: uncharacterized protein LOC100381... 573 e-168
ref|XP_004974856.2| PREDICTED: RNA pseudouridine synthase 3, mit... 572 e-168
ref|XP_003572398.1| PREDICTED: RNA pseudouridine synthase 3, mit... 574 e-166
dbj|BAJ88492.1| predicted protein, partial [Hordeum vulgare subs... 582 e-163
dbj|BAD09700.1| putative ribosomal large subunit pseudouridine s... 572 e-160
ref|XP_006659607.1| PREDICTED: RNA pseudouridine synthase 3, mit... 565 e-158
gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays] 561 e-157
gb|EMT10490.1| RNA pseudourine synthase 3, mitochondrial [Aegilo... 560 e-157
ref|XP_002267010.1| PREDICTED: RNA pseudouridine synthase 3, mit... 516 e-155
ref|XP_007023655.1| Pseudouridine synthase family protein [Theob... 512 e-153
ref|XP_008239134.1| PREDICTED: RNA pseudouridine synthase 3, mit... 519 e-153
ref|XP_012092035.1| PREDICTED: RNA pseudouridine synthase 3, mit... 511 e-153
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun... 518 e-153
ref|XP_002444745.1| hypothetical protein SORBIDRAFT_07g027030 [S... 523 e-153
ref|XP_009358613.1| PREDICTED: RNA pseudouridine synthase 3, mit... 510 e-153
>ref|XP_010927194.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Elaeis
guineensis]
Length = 483
Score = 612 bits (1579), Expect(2) = 0.0
Identities = 288/348 (82%), Positives = 319/348 (91%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
+ +KHNDVMEVGMKIH+PVSVAE+KI KRYDTIPTATLHPNADEIEYI+RLV+YKDSAII
Sbjct: 136 KRVKHNDVMEVGMKIHIPVSVAETKITKRYDTIPTATLHPNADEIEYIRRLVIYKDSAII 195
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+PVKGNLPVHNSMD LAAAALSYG+++GPKLVHR KE+ A
Sbjct: 196 VLNKPPKVPVKGNLPVHNSMDVLAAAALSYGNEQGPKLVHRLDRESSGLLLMGRTKETFA 255
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWLF++INLAK+SSQ+WNDACEATMQRYWALVIG PKE++GLISAPL+KV L+DGK E
Sbjct: 256 RLHWLFANINLAKSSSQIWNDACEATMQRYWALVIGCPKEREGLISAPLSKVLLDDGKTE 315
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDGSQEAVTEYRV+GPTINGCSW+ELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 316 RVILAHPSGIDGSQEAVTEYRVMGPTINGCSWVELRPLTGRKHQLRVHCAEALGTPIVGD 375
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWF+H RWKQMPRVDYEP + +PYKLRRPEGLEVQKGS LSKVPLLHLHCREMVIP+
Sbjct: 376 YKYGWFMHQRWKQMPRVDYEPMTRSPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVIPH 435
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
AKFL +SGEW+DEG PW+S+KP +LRFVAPMPSHMKISWN+MSSYLV
Sbjct: 436 FAKFLRSSGEWHDEGTPWTSDKPDLLRFVAPMPSHMKISWNVMSSYLV 483
Score = 79.7 bits (195), Expect(2) = 0.0
Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
Frame = -3
Query: 1264 GRKLGPTASEPGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNH-----NGHY 1100
GRK P A++P KP R+TAITWVKHYF ++P VIQSHFRKGLVHVE+ NH G +
Sbjct: 72 GRKRDP-AADPSKPRRITAITWVKHYFADIPPEVIQSHFRKGLVHVESSNHGVPPDKGDH 130
Query: 1099 PDCLKKRL 1076
C KR+
Sbjct: 131 QMCQLKRV 138
>ref|XP_008807168.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudouridine synthase 3,
mitochondrial [Phoenix dactylifera]
Length = 483
Score = 614 bits (1584), Expect(2) = 0.0
Identities = 292/348 (83%), Positives = 318/348 (91%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
+ +KHNDVMEVGMKIH+PVSVAE+KI KRYDTIPTATLHPNADEIEYI+RLV YKDSAII
Sbjct: 136 KRVKHNDVMEVGMKIHIPVSVAETKITKRYDTIPTATLHPNADEIEYIRRLVTYKDSAII 195
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+PVKGNLPVHNSMD LAAAALSYG+++GPKLVHR KES A
Sbjct: 196 VLNKPPKVPVKGNLPVHNSMDVLAAAALSYGNEQGPKLVHRLDRESSGLLLMGRTKESFA 255
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
+LHWLF++INLAK+SSQ WNDACEATMQRYWALVIG PKE++GLISAPL+KV LNDGK E
Sbjct: 256 QLHWLFTNINLAKSSSQTWNDACEATMQRYWALVIGCPKEREGLISAPLSKVLLNDGKTE 315
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDGSQEAVTEYRV+GPTINGCSW+ELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 316 RVILAHPSGIDGSQEAVTEYRVMGPTINGCSWVELRPLTGRKHQLRVHCAEALGTPIVGD 375
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWF+H RWKQMPRVDYEP + APYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIP+
Sbjct: 376 YKYGWFMHQRWKQMPRVDYEPMTRAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPH 435
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL +SGEW+DEG PWSS+KP +LRFVAPMPSHMKISWN+MSS LV
Sbjct: 436 IAKFLSSSGEWHDEGTPWSSDKPDLLRFVAPMPSHMKISWNVMSSCLV 483
Score = 75.5 bits (184), Expect(2) = 0.0
Identities = 35/50 (70%), Positives = 41/50 (82%)
Frame = -3
Query: 1264 GRKLGPTASEPGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPN 1115
GRK P A++P KP R+TAITWVKHYF ++P VIQSHFRKGLVHVE+ N
Sbjct: 72 GRKRDP-AADPSKPRRITAITWVKHYFADIPPEVIQSHFRKGLVHVESSN 120
>ref|XP_009401551.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Musa
acuminata subsp. malaccensis]
Length = 481
Score = 592 bits (1525), Expect(2) = 0.0
Identities = 279/348 (80%), Positives = 313/348 (89%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKHN +ME GMKIHLPVS AE+KIIKRYDTIPTATLHPNADEIEYI+RLV++KDSAII
Sbjct: 134 KKIKHNHIMEPGMKIHLPVSAAETKIIKRYDTIPTATLHPNADEIEYIRRLVIHKDSAII 193
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KGNLPVHNSMD LAAAALSYGS +GPKLVHR KES+
Sbjct: 194 VLNKPPKVPMKGNLPVHNSMDILAAAALSYGSDQGPKLVHRLDRESSGLLLLGRTKESLT 253
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWLF+++NLAK+SS++WN+ACEAT QRYWALVIGSPKE++G+ISAPLTKV LN+GK E
Sbjct: 254 RLHWLFTNVNLAKSSSEIWNNACEATTQRYWALVIGSPKEREGIISAPLTKVLLNNGKAE 313
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
R+ILAHPSGIDGSQ+A+TEYRV+GPTINGCSW+ELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 314 RIILAHPSGIDGSQDAITEYRVMGPTINGCSWVELRPLTGRKHQLRVHCAEALGTPIVGD 373
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH RWKQMPRVDYE SG PYKLRRPEGL+VQKGS LSKVPLLHLHCREMVIPN
Sbjct: 374 YKYGWFVHQRWKQMPRVDYETLSGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVIPN 433
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
I+KFLG+SGEW E NP S+ KP +LR VAPMPSHMKISWN+MSS+LV
Sbjct: 434 ISKFLGSSGEWLVECNPGSTSKPDLLRIVAPMPSHMKISWNVMSSFLV 481
Score = 75.9 bits (185), Expect(2) = 0.0
Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Frame = -3
Query: 1264 GRKLGPTASEPGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNHN-----GHY 1100
GRK P AS G+P RVTAI+WVKHYF ++P VIQSHF KGLVHVE+ NH+ +
Sbjct: 72 GRKKDPAAS--GQPRRVTAISWVKHYFADIPPEVIQSHFNKGLVHVESSNHDFQTEENYL 129
Query: 1099 PDCLKK 1082
CLKK
Sbjct: 130 MHCLKK 135
>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 586 bits (1510), Expect(2) = e-173
Identities = 274/348 (78%), Positives = 312/348 (89%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKHNDVME GM+IHLPVSVAE +I KRY+TIPTATLHPN DEIEY++RLV++KDSAI+
Sbjct: 162 KKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAIL 221
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KGNLPVHNSMD LAAAALSYG++EGPKLVHR KES
Sbjct: 222 VLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFT 281
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWLF+ +NLAKT+SQVWN ACEA MQRYWALVIG+PKE++G+ISAPL+KV L+DGK E
Sbjct: 282 RLHWLFTSVNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAE 341
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEAVT YRV+GPTI+GCSWIELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 342 RVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 401
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH RWKQ P+ D+EPF+G PYKLRRPEGLE+QKGS LSKVPLLHLHCREMVIPN
Sbjct: 402 YKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPN 461
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL ++GEW++ G PWS EKP++LRF+APMP+HMKISWNIMSSYLV
Sbjct: 462 IAKFLSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 509
Score = 51.2 bits (121), Expect(2) = e-173
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -3
Query: 1225 PVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNH 1112
P RVTA++WVKHY +VP V+Q+HF K LV+ E +H
Sbjct: 110 PRRVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDH 147
>ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA
pseudouridine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa
Japonica Group] gi|125562210|gb|EAZ07658.1| hypothetical
protein OsI_29911 [Oryza sativa Indica Group]
Length = 475
Score = 586 bits (1510), Expect(2) = e-173
Identities = 274/348 (78%), Positives = 312/348 (89%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKHNDVME GM+IHLPVSVAE +I KRY+TIPTATLHPN DEIEY++RLV++KDSAI+
Sbjct: 128 KKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAIL 187
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KGNLPVHNSMD LAAAALSYG++EGPKLVHR KES
Sbjct: 188 VLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFT 247
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWLF+ +NLAKT+SQVWN ACEA MQRYWALVIG+PKE++G+ISAPL+KV L+DGK E
Sbjct: 248 RLHWLFTSVNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAE 307
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEAVT YRV+GPTI+GCSWIELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 308 RVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 367
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH RWKQ P+ D+EPF+G PYKLRRPEGLE+QKGS LSKVPLLHLHCREMVIPN
Sbjct: 368 YKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPN 427
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL ++GEW++ G PWS EKP++LRF+APMP+HMKISWNIMSSYLV
Sbjct: 428 IAKFLSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 475
Score = 51.2 bits (121), Expect(2) = e-173
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -3
Query: 1225 PVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNH 1112
P RVTA++WVKHY +VP V+Q+HF K LV+ E +H
Sbjct: 76 PRRVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDH 113
>ref|XP_008677489.1| PREDICTED: uncharacterized protein LOC100381582 isoform X1 [Zea mays]
gi|413921570|gb|AFW61502.1| hypothetical protein
ZEAMMB73_778378 [Zea mays]
Length = 478
Score = 573 bits (1478), Expect(2) = e-168
Identities = 267/348 (76%), Positives = 306/348 (87%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKHND ME GM+IHLPVSVAES I KRY+TIPTATLHPN DEIEY++RLV+Y+DSAI+
Sbjct: 131 KKIKHNDAMEPGMRIHLPVSVAESDIKKRYETIPTATLHPNKDEIEYLRRLVIYRDSAIL 190
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KG+LPVHNSMD LAAAALSYGS+EGPKLVHR KES
Sbjct: 191 VLNKPPKVPMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFT 250
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWL + +NLA+TSSQ WN ACEA Q+YWALVIG+PKE++G+ISAP++KV L+DGK E
Sbjct: 251 RLHWLLTSVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAE 310
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEA+TEYRV+GPTINGCSWIEL+PLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 311 RVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGD 370
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH WKQ P+ D+EPF+G PYKLRRPEGLE+QKGS LSKVPLLHLHCREMVIPN
Sbjct: 371 YKYGWFVHQTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPN 430
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL ++G W++ G PW+ EKP++LRFVAPMP HMKISWNIMSSYLV
Sbjct: 431 IAKFLSSTGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYLV 478
Score = 48.5 bits (114), Expect(2) = e-168
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = -3
Query: 1234 PGK---PVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNH 1112
PG+ P RVTA++WVKHYF +VP +Q+HF + +V E +H
Sbjct: 73 PGRKVAPRRVTAVSWVKHYFADVPQEAVQAHFNRRMVFSECYDH 116
>ref|XP_004974856.2| PREDICTED: RNA pseudouridine synthase 3, mitochondrial, partial
[Setaria italica]
Length = 465
Score = 572 bits (1475), Expect(2) = e-168
Identities = 264/348 (75%), Positives = 309/348 (88%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKHNDVME GM+IHLPVSVAE +I KRY+TIPTATLHPN DEIEY++RLV+++DS+I+
Sbjct: 118 KKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHRDSSIL 177
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KG+LPVHNSMD LAAAALSYG+KEGPKLVHR KES
Sbjct: 178 VLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNKEGPKLVHRLDRESSGLILMGRTKESFT 237
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
+LHWLF+ +NLA+T+SQ WN ACEA +Q+YWALVIG+PKE++G+ISAP++KV L+DGK E
Sbjct: 238 QLHWLFTSVNLARTTSQTWNKACEAYVQKYWALVIGTPKEREGVISAPISKVLLDDGKAE 297
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEA+TEYRV+GPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 298 RVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 357
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH RWKQ P+ D+EPF+G PYK+RRPEGLEVQKGS LSKVPLLHLHCREMV+PN
Sbjct: 358 YKYGWFVHQRWKQNPQPDFEPFTGEPYKIRRPEGLEVQKGSVLSKVPLLHLHCREMVLPN 417
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL + GEW+D G W+ EKP++LRF+APMP HMKISWN+MSSYLV
Sbjct: 418 IAKFLSSIGEWHDGGAAWAKEKPNLLRFIAPMPPHMKISWNVMSSYLV 465
Score = 48.9 bits (115), Expect(2) = e-168
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = -3
Query: 1234 PGK---PVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNH 1112
PG+ P RVTA++WVKHYF +VP +Q+HF + +V E H
Sbjct: 60 PGRKVVPRRVTAVSWVKHYFADVPQEAVQAHFNRRMVFSECSEH 103
>ref|XP_003572398.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Brachypodium
distachyon]
Length = 479
Score = 574 bits (1480), Expect(2) = e-166
Identities = 266/348 (76%), Positives = 309/348 (88%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKH++VME GM+IHLPVSVAE++I KRY+TIP ATLHPN DEIEY++RLV+YKDSAI+
Sbjct: 132 KKIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPAATLHPNKDEIEYLKRLVIYKDSAIL 191
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KG+LPVHNSMD LAAAALSYG+++GPKLVHR KES
Sbjct: 192 VLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRLDRDTSGLLLMGRTKESFT 251
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWLF+ + LA+T+S +WN ACE+ +QRYWALVIG+PKE +G+ISAPLTKV L+DGK E
Sbjct: 252 RLHWLFTSVKLARTASPIWNSACESYLQRYWALVIGTPKESEGVISAPLTKVLLDDGKAE 311
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEAVTEYRV+GPTINGCSWIEL PLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 312 RVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGD 371
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH RWKQ P+ D+EPF+G YKLRRPEGLEVQKGS LSKVPLLHLHCREMV+PN
Sbjct: 372 YKYGWFVHQRWKQNPQPDFEPFTGEQYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPN 431
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL N+G+W+D+G PWS EKP++LRF+APMP+HMKISWNIMSSYLV
Sbjct: 432 IAKFLSNTGDWHDDGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 479
Score = 41.6 bits (96), Expect(2) = e-166
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -3
Query: 1219 RVTAITWVKHYFDEVPSTVIQSHFRKGLVHVE 1124
RV+A++WVKH F +VP V+Q+HF K V E
Sbjct: 82 RVSAVSWVKHCFADVPQEVVQAHFNKRQVFAE 113
>dbj|BAJ88492.1| predicted protein, partial [Hordeum vulgare subsp. vulgare]
Length = 357
Score = 582 bits (1501), Expect = e-163
Identities = 271/348 (77%), Positives = 308/348 (88%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
+ IKH++VME GM+IHLPVSVAE++I KRY+TIPTATLHPN DEIEY++RLV+YKDSAI+
Sbjct: 10 KRIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAIL 69
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KGNLPVHNSMD LAAAALS+G++EGPKLVHR +E
Sbjct: 70 VLNKPPKVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTREGFT 129
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWLF+ I LAKT+SQ WN ACE+ +QRYWALVIG+P E +G+ISAPLTKV L+DGK E
Sbjct: 130 RLHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLDDGKAE 189
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEAVTEYRV+GPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 190 RVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 249
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH RWKQ P+ D+EPF+G PYKLRRPEGLEVQKGS LSKVPLLHLHCREMV+PN
Sbjct: 250 YKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPN 309
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL N+GEW+D G PWS EKP++LRF+APMP+HMKISWNIMSSYLV
Sbjct: 310 IAKFLSNTGEWHDNGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 357
>dbj|BAD09700.1| putative ribosomal large subunit pseudouridine synthase C protein
[Oryza sativa Japonica Group] gi|42409169|dbj|BAD10435.1|
putative ribosomal large subunit pseudouridine synthase C
protein [Oryza sativa Japonica Group]
Length = 340
Score = 572 bits (1475), Expect = e-160
Identities = 268/340 (78%), Positives = 304/340 (89%)
Frame = -2
Query: 1061 MEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAIIVLNKPPKL 882
ME GM+IHLPVSVAE +I KRY+TIPTATLHPN DEIEY++RLV++KDSAI+VLNKPPK+
Sbjct: 1 MEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKV 60
Query: 881 PVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIARLHWLFSD 702
P+KGNLPVHNSMD LAAAALSYG++EGPKLVHR KES RLHWLF+
Sbjct: 61 PMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTS 120
Query: 701 INLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKMERVILAHPS 522
+NLAKT+SQVWN ACEA MQRYWALVIG+PKE++G+ISAPL+KV L+DGK ERVILAHPS
Sbjct: 121 VNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPS 180
Query: 521 GIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 342
GIDG+QEAVT YRV+GPTI+GCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 341 SRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPNIAKFLGNS 162
RWKQ P+ D+EPF+G PYKLRRPEGLE+QKGS LSKVPLLHLHCREMVIPNIAKFL ++
Sbjct: 241 QRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSN 300
Query: 161 GEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
GEW++ G PWS EKP++LRF+APMP+HMKISWNIMSSYLV
Sbjct: 301 GEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 340
>ref|XP_006659607.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Oryza
brachyantha]
Length = 340
Score = 565 bits (1457), Expect = e-158
Identities = 264/340 (77%), Positives = 300/340 (88%)
Frame = -2
Query: 1061 MEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAIIVLNKPPKL 882
ME GM+IHLPVSVAE +I KRY+TIPTATLHPN DEIEY++RLV++KDS+I+VLNKPPK+
Sbjct: 1 MEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLKRLVIHKDSSILVLNKPPKV 60
Query: 881 PVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIARLHWLFSD 702
P+KG+LPVHNSMD LAAAALSYG+ EGPKLVHR KES RLHWLF+
Sbjct: 61 PMKGHLPVHNSMDVLAAAALSYGNDEGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTS 120
Query: 701 INLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKMERVILAHPS 522
+NLAKT+S+ WN ACEA MQRYWALVIG+PKE +G+ISAPL+KV L+DGK ERVILAHPS
Sbjct: 121 VNLAKTNSEAWNAACEAYMQRYWALVIGTPKESEGIISAPLSKVLLDDGKAERVILAHPS 180
Query: 521 GIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 342
GIDG+QEAVT YRV+GPTI+GCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAVTAYRVMGPTISGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 341 SRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPNIAKFLGNS 162
RWKQ P+ D+EPF+G PYKLRRPEGL +QKGS LSKVPLLHLHCREMVIPNIAKFL N+
Sbjct: 241 QRWKQNPQPDFEPFTGEPYKLRRPEGLAIQKGSVLSKVPLLHLHCREMVIPNIAKFLSNT 300
Query: 161 GEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
GEW++ G PWS EKP++LRF+APMP+HMKISWNIMSSYLV
Sbjct: 301 GEWHENGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 340
>gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 340
Score = 561 bits (1447), Expect = e-157
Identities = 262/340 (77%), Positives = 299/340 (87%)
Frame = -2
Query: 1061 MEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAIIVLNKPPKL 882
ME GM+IHLPVSVAES I KRY+TIPTATLHPN DEIEY++RLV+Y+DSAI+VLNKPPK+
Sbjct: 1 MEPGMRIHLPVSVAESDIKKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPKV 60
Query: 881 PVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIARLHWLFSD 702
P+KG+LPVHNSMD LAAAALSYGS+EGPKLVHR KES RLHWL +
Sbjct: 61 PMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLTS 120
Query: 701 INLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKMERVILAHPS 522
+NLA+TSSQ WN ACEA Q+YWALVIG+PKE++G+ISAP++KV L+DGK ERVILAHPS
Sbjct: 121 VNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPS 180
Query: 521 GIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 342
GIDG+QEA+TEYRV+GPTINGCSWIEL+PLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 341 SRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPNIAKFLGNS 162
WKQ P+ D+EPF+G PYKLRRPEGLE+QKGS LSKVPLLHLHCREMVIPNIAKFL ++
Sbjct: 241 QTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSST 300
Query: 161 GEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
G W++ G PW+ EKP++LRFVAPMP HMKISWNIMSSYLV
Sbjct: 301 GGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYLV 340
>gb|EMT10490.1| RNA pseudourine synthase 3, mitochondrial [Aegilops tauschii]
Length = 368
Score = 560 bits (1443), Expect = e-157
Identities = 265/348 (76%), Positives = 302/348 (86%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKH++VME GM+IHLPVSVAE++I KRY+TIPTATLHPN DEIEY++RLV+YKDSAI+
Sbjct: 32 KKIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAIL 91
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KGNLPVHNSMD LAAAALSYG++EGPKLVHR +ES
Sbjct: 92 VLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRDTSGLLLMGRTRESFT 151
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
RLHWLF+ I LA+T+SQ RYWALVIG+P E +G+ISAPLTKV L+DGK E
Sbjct: 152 RLHWLFTSIKLARTASQ-----------RYWALVIGTPTESEGIISAPLTKVLLDDGKAE 200
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEAVTEYRV+GPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 201 RVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 260
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH RWKQ P+ D+EPF+G PYKLRRPEGLEVQKGS LSKVPLLHLHCREMV+PN
Sbjct: 261 YKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPN 320
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL N+GEW+D G PWS EKP++LRF+AP+P+HMKISWNIMSSYLV
Sbjct: 321 IAKFLSNTGEWHDNGTPWSKEKPNLLRFIAPLPAHMKISWNIMSSYLV 368
>ref|XP_002267010.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Vitis
vinifera]
Length = 479
Score = 516 bits (1329), Expect(2) = e-155
Identities = 252/349 (72%), Positives = 290/349 (83%), Gaps = 2/349 (0%)
Frame = -2
Query: 1082 EIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAIIV 903
+IK N+VME G +I++PVSVAE++I KR+DTIP+ TLHPNADEIEY+QRLV YKD AI+V
Sbjct: 131 KIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILV 190
Query: 902 LNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIAR 723
LNKPPK+P+KGNLPVHNSMDALAAAAL++ +EGPKLVHR KES+A
Sbjct: 191 LNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAH 250
Query: 722 LHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKMER 543
LHWLFSDIN AK+ S+ W+DACEAT QRYWALVIGSPK+K+G+I APL+KV L+DGK ER
Sbjct: 251 LHWLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTER 310
Query: 542 VILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDY 363
VILA+ SG++ SQEA+TEYRVLGP INGCSWIEL P T RKHQLRVHCAEALGTPIVGDY
Sbjct: 311 VILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDY 370
Query: 362 KYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPNI 183
KYGWFVH RWKQMPRVD EP +G PYK+RRPEGL+VQKGS LSKVPLLHLHCRE+++PNI
Sbjct: 371 KYGWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNI 430
Query: 182 AKFLGNSGEWYDEGN--PWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
AKFL N P S KP +LRFVA MP+HMKISWN+MSSYLV
Sbjct: 431 AKFLPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479
Score = 63.2 bits (152), Expect(2) = e-155
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = -3
Query: 1231 GKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPN 1115
G P VTAI+W+K+YFDE+P +V+QSHF KGLVH+E N
Sbjct: 76 GLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSN 114
>ref|XP_007023655.1| Pseudouridine synthase family protein [Theobroma cacao]
gi|508779021|gb|EOY26277.1| Pseudouridine synthase family
protein [Theobroma cacao]
Length = 471
Score = 512 bits (1319), Expect(2) = e-153
Identities = 247/347 (71%), Positives = 285/347 (82%)
Frame = -2
Query: 1082 EIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAIIV 903
+IKHN+VMEVG ++ +PVS+AE++I KR+D IP+ TL+PN DEI+Y+QRLV YKD AI+V
Sbjct: 125 KIKHNEVMEVGTRVWVPVSIAETRISKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYAILV 184
Query: 902 LNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIAR 723
LNKPPKLPVKG+LPVHNSMDALAAAALSY EGPKLVHR KES+A
Sbjct: 185 LNKPPKLPVKGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLLMGRTKESVAH 244
Query: 722 LHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKMER 543
LHWLF+D+N K+S + WNDAC+ QR+WALVIG+PKEK+GLI APL+K+ L+DGK ER
Sbjct: 245 LHWLFNDLNTVKSSCKAWNDACDVKYQRFWALVIGTPKEKEGLICAPLSKILLDDGKTER 304
Query: 542 VILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDY 363
VILA G++ SQEA+TEYRVLGP INGCSWIELRPLT RKHQLRVHCAEALGTPIVGDY
Sbjct: 305 VILAQNVGLEASQEAITEYRVLGPMINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDY 364
Query: 362 KYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPNI 183
KYGWFVH RWKQMPRVD EP +G PYKLRRPEGL+VQKGS LSKVPLLHLHCRE+V+PNI
Sbjct: 365 KYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNI 424
Query: 182 AKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
AKFL + + P S KP +LRFVA MP HMKISWN+MSSYLV
Sbjct: 425 AKFLPVLNKNTETLPPALSMKPDLLRFVATMPKHMKISWNLMSSYLV 471
Score = 60.5 bits (145), Expect(2) = e-153
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = -3
Query: 1234 PGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPN 1115
PG RVTAI+W+K+YFDE+P + IQSHF KGLV +E+ N
Sbjct: 69 PGGTARVTAISWLKYYFDEIPDSAIQSHFNKGLVQMESSN 108
>ref|XP_008239134.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Prunus mume]
Length = 471
Score = 519 bits (1336), Expect(2) = e-153
Identities = 255/365 (69%), Positives = 295/365 (80%), Gaps = 8/365 (2%)
Frame = -2
Query: 1112 QWTLPRLLEEE--------IKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNAD 957
Q P L+E+E I+ ++VMEVG ++++PVSVAES++ +R+D IP+ TL+PNAD
Sbjct: 107 QMECPGLIEKEGQMKPMRKIRPSEVMEVGARVYVPVSVAESRVSRRFDCIPSGTLYPNAD 166
Query: 956 EIEYIQRLVVYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXX 777
EIEY+QR V YKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYG+ EGPKLVHR
Sbjct: 167 EIEYLQRRVKYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYGNNEGPKLVHRLD 226
Query: 776 XXXXXXXXXXXXKESIARLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQG 597
KES++ L WL++D N K+S Q W+DACEA QRYWALVIGSPKEK+G
Sbjct: 227 RESSGLHLMGRTKESVSLLQWLYTDFNKGKSSCQAWDDACEARYQRYWALVIGSPKEKEG 286
Query: 596 LISAPLTKVFLNDGKMERVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKH 417
LI APL+KV L++GK ERVILAH SG++ SQ+A+T+YRVLGPTI+GCSWIELRPLT RKH
Sbjct: 287 LICAPLSKVLLDNGKTERVILAHQSGLEASQKAITQYRVLGPTIHGCSWIELRPLTSRKH 346
Query: 416 QLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSAL 237
QLRVHCAEALGTPIVGDYKYGWFVH RWKQMP VD EP SG PYKLRRP GL+VQKGS L
Sbjct: 347 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPHVDIEPTSGLPYKLRRPAGLDVQKGSVL 406
Query: 236 SKVPLLHLHCREMVIPNIAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIM 57
SKVPLLHLHCRE+V+PNIAKFL + D +P KP +LRFVA MPSHMKISWN+M
Sbjct: 407 SKVPLLHLHCRELVLPNIAKFLLILDQKLDNLHPAVCSKPDILRFVASMPSHMKISWNLM 466
Query: 56 SSYLV 42
SSYLV
Sbjct: 467 SSYLV 471
Score = 53.1 bits (126), Expect(2) = e-153
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = -3
Query: 1252 GPTASEPGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETP 1118
G + E G RVTA++WVK+YFD + + IQSHF++GLV +E P
Sbjct: 67 GKRSHEDGVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECP 111
>ref|XP_012092035.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Jatropha
curcas] gi|643704235|gb|KDP21299.1| hypothetical protein
JCGZ_21770 [Jatropha curcas]
Length = 462
Score = 511 bits (1316), Expect(2) = e-153
Identities = 248/347 (71%), Positives = 285/347 (82%)
Frame = -2
Query: 1082 EIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAIIV 903
+IK +DVMEVG ++ +PVSVAE++I KR+DTIP+ TL+PNADEIEY+QRLV YKDSAIIV
Sbjct: 116 KIKPSDVMEVGARVLIPVSVAETRISKRFDTIPSGTLYPNADEIEYLQRLVKYKDSAIIV 175
Query: 902 LNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIAR 723
LNKPPKLP+KGNLPVHNSMDALAAAAL+Y EGPKLV R KES+
Sbjct: 176 LNKPPKLPIKGNLPVHNSMDALAAAALTYDYDEGPKLVQRLDRESSGLILMGRTKESVDH 235
Query: 722 LHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKMER 543
L W+FSD + + + WNDAC+AT QRYWAL+IGSPKEK+GLI APL+KV LNDGK ER
Sbjct: 236 LQWMFSDQKKSNSYCKDWNDACQATCQRYWALIIGSPKEKEGLIRAPLSKVLLNDGKTER 295
Query: 542 VILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDY 363
++LA SG + SQEA+TEYRVLGPTINGCSW+EL PLT RKHQLRVHCAEALGTPIVGDY
Sbjct: 296 IVLAQNSGFEASQEALTEYRVLGPTINGCSWVELCPLTSRKHQLRVHCAEALGTPIVGDY 355
Query: 362 KYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPNI 183
KYGWF+H RWKQMPRVD EPFSG PYKLRRPEG++VQKGS LSKVPLLHLHCRE+V+PNI
Sbjct: 356 KYGWFMHRRWKQMPRVDIEPFSGKPYKLRRPEGIDVQKGSVLSKVPLLHLHCRELVLPNI 415
Query: 182 AKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
AKFL + +P S KP +LRFVA MP+HMKISWN+MSSYLV
Sbjct: 416 AKFLDVLNQKSKNIHPALSAKPDLLRFVASMPTHMKISWNLMSSYLV 462
Score = 60.5 bits (145), Expect(2) = e-153
Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Frame = -3
Query: 1234 PGKPV---RVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNHNG 1106
PGK RVTAI+WVK+YFDE+P +VIQSHF +GLV +E H G
Sbjct: 65 PGKTSVASRVTAISWVKYYFDEIPDSVIQSHFNRGLVQMECMQHGG 110
>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
gi|462405724|gb|EMJ11188.1| hypothetical protein
PRUPE_ppa005240mg [Prunus persica]
Length = 471
Score = 518 bits (1335), Expect(2) = e-153
Identities = 254/365 (69%), Positives = 295/365 (80%), Gaps = 8/365 (2%)
Frame = -2
Query: 1112 QWTLPRLLEEE--------IKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNAD 957
Q P ++E+E I+ ++VMEVG ++++PVSV ES++ +R+D IP+ TL+PNAD
Sbjct: 107 QMECPGMIEKEGQMKPMRKIRPSEVMEVGARVYVPVSVVESRVSRRFDCIPSGTLYPNAD 166
Query: 956 EIEYIQRLVVYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXX 777
EIEY+QR V YKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYG+ +GPKLVHR
Sbjct: 167 EIEYMQRRVKYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYGNNKGPKLVHRLD 226
Query: 776 XXXXXXXXXXXXKESIARLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQG 597
KES++ L WL++D N K+S Q W+DACEA QRYWALVIGSPKEK+G
Sbjct: 227 RESSGLHLMGRTKESVSLLQWLYTDFNKGKSSCQAWDDACEARYQRYWALVIGSPKEKEG 286
Query: 596 LISAPLTKVFLNDGKMERVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKH 417
LI APL+KV L++GK ERVILAH SG++ SQ+A+T+YRVLGPTINGCSWIELRPLT RKH
Sbjct: 287 LICAPLSKVLLDNGKTERVILAHQSGLEASQKAITQYRVLGPTINGCSWIELRPLTSRKH 346
Query: 416 QLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSAL 237
QLRVHCAEALGTPIVGDYKYGWFVH RWKQMP VD EP SG PYKLRRP GL+VQKGS L
Sbjct: 347 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPHVDVEPTSGLPYKLRRPAGLDVQKGSVL 406
Query: 236 SKVPLLHLHCREMVIPNIAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIM 57
SKVPLLHLHCRE+V+PNIAKFL + D +P S KP +LRFVA MPSHMKISWN+M
Sbjct: 407 SKVPLLHLHCRELVLPNIAKFLLILDQKLDSLHPAVSSKPDILRFVASMPSHMKISWNLM 466
Query: 56 SSYLV 42
SSYLV
Sbjct: 467 SSYLV 471
Score = 52.8 bits (125), Expect(2) = e-153
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = -3
Query: 1252 GPTASEPGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETP 1118
G + E G RVTA++WVK+YFD + + IQSHF++GLV +E P
Sbjct: 67 GKRSHEGGVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECP 111
>ref|XP_002444745.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
gi|241941095|gb|EES14240.1| hypothetical protein
SORBIDRAFT_07g027030 [Sorghum bicolor]
Length = 439
Score = 523 bits (1347), Expect(2) = e-153
Identities = 248/348 (71%), Positives = 286/348 (82%)
Frame = -2
Query: 1085 EEIKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNADEIEYIQRLVVYKDSAII 906
++IKHND ME GM+IHLPVSVAE +I KRY+TIPTATLHPN DEIEY++RLV+++DSAI+
Sbjct: 131 KKIKHNDAMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHRDSAIL 190
Query: 905 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXXXXXXXXXXXXXXKESIA 726
VLNKPPK+P+KG+LPVHNSMD LAAAALSYG+KEGPKL
Sbjct: 191 VLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNKEGPKLT--------------------- 229
Query: 725 RLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQGLISAPLTKVFLNDGKME 546
WN ACEA +Q+YWALVIG+PKE++G+I AP++KV L+DGK E
Sbjct: 230 ------------------WNKACEAYVQKYWALVIGTPKEREGVICAPISKVLLDDGKAE 271
Query: 545 RVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 366
RVILAHPSGIDG+QEA+TEYRV+GPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 272 RVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 331
Query: 365 YKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSALSKVPLLHLHCREMVIPN 186
YKYGWFVH WKQ P+ D+EPF+G PYKLRRPEGLE+QKGS LSKVPLLHLHCREMVIPN
Sbjct: 332 YKYGWFVHQTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPN 391
Query: 185 IAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIMSSYLV 42
IAKFL ++GEW++ G PW+ EKP++LRFVAPMP HMKISWNIMSSYLV
Sbjct: 392 IAKFLSSTGEWHENGAPWAKEKPNLLRFVAPMPPHMKISWNIMSSYLV 439
Score = 48.1 bits (113), Expect(2) = e-153
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -3
Query: 1255 LGPTASEPGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPNH 1112
L P P RVT ++WVKHYF +VP +Q+HF + V E +H
Sbjct: 69 LDPLPGRKAAPRRVTVVSWVKHYFADVPHEAVQAHFNRRTVFSECSDH 116
>ref|XP_009358613.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Pyrus x
bretschneideri]
Length = 470
Score = 510 bits (1314), Expect(2) = e-153
Identities = 250/365 (68%), Positives = 291/365 (79%), Gaps = 8/365 (2%)
Frame = -2
Query: 1112 QWTLPRLLEEE--------IKHNDVMEVGMKIHLPVSVAESKIIKRYDTIPTATLHPNAD 957
Q P L+E+E I+ +DV++VG ++ +PVSVAES++ +R+D IP+ TL+PNAD
Sbjct: 106 QMECPNLIEKEGRMKPMRQIRPSDVVDVGARVFVPVSVAESRVSRRFDCIPSGTLNPNAD 165
Query: 956 EIEYIQRLVVYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYGSKEGPKLVHRXX 777
EI+Y+QRLV YKDSAIIVLNKPPKLPVKGNLPVHN MDALAAAALSY KEGPKLVHR
Sbjct: 166 EIKYLQRLVKYKDSAIIVLNKPPKLPVKGNLPVHNGMDALAAAALSYDCKEGPKLVHRLD 225
Query: 776 XXXXXXXXXXXXKESIARLHWLFSDINLAKTSSQVWNDACEATMQRYWALVIGSPKEKQG 597
+ES++ L WL++DIN K+ + WNDAC+A Q YWALVIGSPKEK+G
Sbjct: 226 TESSGLHLMGRTRESVSLLQWLYTDINKGKSPCKAWNDACDAKYQSYWALVIGSPKEKEG 285
Query: 596 LISAPLTKVFLNDGKMERVILAHPSGIDGSQEAVTEYRVLGPTINGCSWIELRPLTGRKH 417
LI APLTKV L+DGK ERVILAH SG SQ+A+T+YRVLGPTINGCSWIELRPLT RKH
Sbjct: 286 LICAPLTKVVLDDGKTERVILAHQSGFQTSQQAITQYRVLGPTINGCSWIELRPLTSRKH 345
Query: 416 QLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDYEPFSGAPYKLRRPEGLEVQKGSAL 237
QLRVHCAEALGTPIVGD+KYGWFVH RWKQ+P+VD EP SG PYKLRRP GL+VQKGS L
Sbjct: 346 QLRVHCAEALGTPIVGDFKYGWFVHKRWKQIPQVDIEPTSGLPYKLRRPAGLDVQKGSVL 405
Query: 236 SKVPLLHLHCREMVIPNIAKFLGNSGEWYDEGNPWSSEKPSVLRFVAPMPSHMKISWNIM 57
SKVPLLHLHCRE+V+PNIAKFL + D+ +P KP +LRF A MPSHMKISWN+M
Sbjct: 406 SKVPLLHLHCRELVLPNIAKFLLLLDQKLDDQHPAVVSKPDLLRFCASMPSHMKISWNLM 465
Query: 56 SSYLV 42
SSYLV
Sbjct: 466 SSYLV 470
Score = 59.7 bits (143), Expect(2) = e-153
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = -3
Query: 1252 GPTASEPGKPVRVTAITWVKHYFDEVPSTVIQSHFRKGLVHVETPN 1115
G + E G RVTA++WVK+YFDE+ + IQSHF KGLV +E PN
Sbjct: 66 GKRSHEDGAVSRVTAVSWVKYYFDEIRDSAIQSHFNKGLVQMECPN 111