BLASTX nr result
ID: Anemarrhena21_contig00020597
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00020597
(1466 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008806146.1| PREDICTED: RNA pseudouridine synthase 2, chl... 334 1e-88
ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chl... 334 1e-88
ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chl... 333 3e-88
ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chl... 333 3e-88
ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chl... 310 2e-81
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S... 266 2e-68
ref|XP_008806145.1| PREDICTED: RNA pseudouridine synthase 2, chl... 264 1e-67
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl... 264 1e-67
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi... 262 4e-67
gb|ACG41877.1| RNA binding protein [Zea mays] 261 8e-67
ref|XP_008647485.1| PREDICTED: RNA binding protein isoform X2 [Z... 260 2e-66
ref|XP_008647484.1| PREDICTED: RNA binding protein isoform X1 [Z... 260 2e-66
ref|NP_001140404.1| RNA binding protein [Zea mays] gi|194699356|... 260 2e-66
gb|AFW75755.1| hypothetical protein ZEAMMB73_425131 [Zea mays] 260 2e-66
gb|AFW75753.1| hypothetical protein ZEAMMB73_425131 [Zea mays] 260 2e-66
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g... 260 2e-66
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl... 259 5e-66
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl... 259 5e-66
ref|XP_003563280.1| PREDICTED: RNA pseudouridine synthase 2, chl... 258 6e-66
ref|XP_010320444.1| PREDICTED: RNA pseudouridine synthase 2, chl... 258 8e-66
>ref|XP_008806146.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
[Phoenix dactylifera]
Length = 395
Score = 334 bits (856), Expect = 1e-88
Identities = 169/237 (71%), Positives = 202/237 (85%), Gaps = 6/237 (2%)
Frame = -1
Query: 1340 SYSLKLLRQNPKPRVSKLLCCS--TPTVDLGPDQTPQP----LRANHAGIRLEESVEVGA 1179
S+SL LLR++ + RVSK LC S T + D P+ +PQ LR NHAG+RLEESVE+GA
Sbjct: 17 SFSLDLLRRDRRDRVSKALCSSPTTSSRDSNPEPSPQRPQRVLRGNHAGLRLEESVEIGA 76
Query: 1178 GKTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPL 999
KTR+DSWISSRI+GVSRARIQSSIRSG V VNG T++KVSHIIK GD +SCTVSELQPL
Sbjct: 77 EKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGDMVSCTVSELQPL 136
Query: 998 RAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKR 819
RA+ EDIPLDIVYEDA+VLVVNKPAHMVVHPAPGN NGTLV+AIL+HCRLPT A +SN +
Sbjct: 137 RAKAEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHHCRLPTIACVSNSK 196
Query: 818 SLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ E+EEC +SSDNE+++++ D+SS E +SEN+EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 197 NSESEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKGTSGLLVVAK 253
Score = 120 bits (301), Expect = 3e-24
Identities = 53/75 (70%), Positives = 68/75 (90%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV+++ GGS+LV W+LETGRTHQIRAHAK+LG+PLLGDE+YGGTKSMALSLL+PR
Sbjct: 321 RYKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRT 380
Query: 469 PSSNHGHLALMISRL 425
SS+HGHL+ ++S++
Sbjct: 381 SSSHHGHLSQILSKI 395
>ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
[Phoenix dactylifera]
Length = 439
Score = 334 bits (856), Expect = 1e-88
Identities = 169/237 (71%), Positives = 202/237 (85%), Gaps = 6/237 (2%)
Frame = -1
Query: 1340 SYSLKLLRQNPKPRVSKLLCCS--TPTVDLGPDQTPQP----LRANHAGIRLEESVEVGA 1179
S+SL LLR++ + RVSK LC S T + D P+ +PQ LR NHAG+RLEESVE+GA
Sbjct: 17 SFSLDLLRRDRRDRVSKALCSSPTTSSRDSNPEPSPQRPQRVLRGNHAGLRLEESVEIGA 76
Query: 1178 GKTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPL 999
KTR+DSWISSRI+GVSRARIQSSIRSG V VNG T++KVSHIIK GD +SCTVSELQPL
Sbjct: 77 EKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGDMVSCTVSELQPL 136
Query: 998 RAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKR 819
RA+ EDIPLDIVYEDA+VLVVNKPAHMVVHPAPGN NGTLV+AIL+HCRLPT A +SN +
Sbjct: 137 RAKAEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHHCRLPTIACVSNSK 196
Query: 818 SLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ E+EEC +SSDNE+++++ D+SS E +SEN+EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 197 NSESEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKGTSGLLVVAK 253
Score = 191 bits (485), Expect = 1e-45
Identities = 85/117 (72%), Positives = 103/117 (88%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV+++ GGS+LV W+LETGRTHQIRAHAK+LG+PLLGDE+YGGTKSMALSLL+PR
Sbjct: 321 RYKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRT 380
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFS 299
SS+HGHL+ ++S++QRPCLHA LGF HPHTGE+LRFSCPPPDDF+E L L+S S
Sbjct: 381 SSSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPDDFAEVLDQLQSIS 437
>ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
[Elaeis guineensis]
Length = 445
Score = 333 bits (853), Expect = 3e-88
Identities = 168/239 (70%), Positives = 199/239 (83%), Gaps = 7/239 (2%)
Frame = -1
Query: 1343 ISYSLKLLRQNPKPRVSKLLCCSTPTVDLGPDQTPQPLR-------ANHAGIRLEESVEV 1185
+S+SL LLR++P+ RVSK LC ST T D P+P + NHAG+RLEE VE+
Sbjct: 27 LSFSLDLLRRDPRDRVSKALCSSTSTSSR--DSNPEPFQRQQRVITGNHAGLRLEERVEI 84
Query: 1184 GAGKTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQ 1005
GA KTR+DSWISSRI VSRARIQSSIRSGLVTVNG T++KVSHIIK GD +SCTVSELQ
Sbjct: 85 GAEKTRLDSWISSRIETVSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGDMVSCTVSELQ 144
Query: 1004 PLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISN 825
PLRAE EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAIL+HCRLPT A ++
Sbjct: 145 PLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPTIACVNK 204
Query: 824 KRSLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ E+E+C +SSD+E+++++ D+SS E +SEN+EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 205 SKISESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKGTSGLLVVAK 263
Score = 189 bits (480), Expect = 5e-45
Identities = 84/112 (75%), Positives = 100/112 (89%)
Frame = -2
Query: 640 VVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRIPSS 461
++E+ GGSALV W+LETGRTHQIRAHAK++G+PLLGDE+YGGTKSMALSLL+PR SS
Sbjct: 330 IIELLGRGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTSSS 389
Query: 460 NHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRS 305
+HGHL+ ++S+LQRPCLHA SLGF HPHTGEYLRFSCPPPDDF+E L L+S
Sbjct: 390 HHGHLSQILSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPDDFAEVLDQLQS 441
>ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
[Elaeis guineensis]
Length = 449
Score = 333 bits (853), Expect = 3e-88
Identities = 168/239 (70%), Positives = 199/239 (83%), Gaps = 7/239 (2%)
Frame = -1
Query: 1343 ISYSLKLLRQNPKPRVSKLLCCSTPTVDLGPDQTPQPLR-------ANHAGIRLEESVEV 1185
+S+SL LLR++P+ RVSK LC ST T D P+P + NHAG+RLEE VE+
Sbjct: 27 LSFSLDLLRRDPRDRVSKALCSSTSTSSR--DSNPEPFQRQQRVITGNHAGLRLEERVEI 84
Query: 1184 GAGKTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQ 1005
GA KTR+DSWISSRI VSRARIQSSIRSGLVTVNG T++KVSHIIK GD +SCTVSELQ
Sbjct: 85 GAEKTRLDSWISSRIETVSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGDMVSCTVSELQ 144
Query: 1004 PLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISN 825
PLRAE EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAIL+HCRLPT A ++
Sbjct: 145 PLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPTIACVNK 204
Query: 824 KRSLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ E+E+C +SSD+E+++++ D+SS E +SEN+EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 205 SKISESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKGTSGLLVVAK 263
Score = 196 bits (498), Expect = 4e-47
Identities = 88/115 (76%), Positives = 103/115 (89%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV+E+ GGSALV W+LETGRTHQIRAHAK++G+PLLGDE+YGGTKSMALSLL+PR
Sbjct: 331 RYKVIELLGRGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRT 390
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRS 305
SS+HGHL+ ++S+LQRPCLHA SLGF HPHTGEYLRFSCPPPDDF+E L L+S
Sbjct: 391 SSSHHGHLSQILSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPDDFAEVLDQLQS 445
>ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Musa
acuminata subsp. malaccensis]
gi|695071322|ref|XP_009382728.1| PREDICTED: RNA
pseudouridine synthase 2, chloroplastic [Musa acuminata
subsp. malaccensis]
Length = 440
Score = 310 bits (793), Expect = 2e-81
Identities = 164/236 (69%), Positives = 187/236 (79%), Gaps = 7/236 (2%)
Frame = -1
Query: 1334 SLKLLRQNPK-----PRVSKLLCCSTPTVDLGPDQTPQ--PLRANHAGIRLEESVEVGAG 1176
SL LLR+NP PR L C S P DL P+ P +R NHAG+RLEE VEVGA
Sbjct: 19 SLNLLRRNPNRSRVPPRA--LQCSSYP--DLDPESPPPRGEIRVNHAGVRLEERVEVGAE 74
Query: 1175 KTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLR 996
KTRIDSWISSRIRGVSRARIQSSIRSGLV VNG T+NKVSHIIK GD +SC +S+L PL+
Sbjct: 75 KTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGDMVSCMISKLLPLK 134
Query: 995 AEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRS 816
AEPED+PLDIVYED HV+VVNKPAHMVVHPAPGNANGTLVNAIL+HCRLP A +N +
Sbjct: 135 AEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPIRAFANNIQI 194
Query: 815 LEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ EEC +SSD++IE+ D+SS E+ EN EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 195 SDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKGTSGLLVVAK 250
Score = 194 bits (492), Expect = 2e-46
Identities = 87/117 (74%), Positives = 103/117 (88%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV+E F GG+ALV+W+LETGRTHQIRAHAK+LG+PLLGDE+YGGTK MALSLL+PR
Sbjct: 318 RYKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRT 377
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFS 299
P + HGHL+ +IS+LQRPCLHA S+GF HPHTGE+L+FSCPPPDDFS+ L LRS S
Sbjct: 378 PPTYHGHLSNIISKLQRPCLHAFSIGFKHPHTGEFLQFSCPPPDDFSKVLDQLRSIS 434
>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
gi|241917257|gb|EER90401.1| hypothetical protein
SORBIDRAFT_10g030300 [Sorghum bicolor]
Length = 441
Score = 266 bits (681), Expect = 2e-68
Identities = 136/229 (59%), Positives = 174/229 (75%), Gaps = 2/229 (0%)
Frame = -1
Query: 1328 KLLRQNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRIDSWIS 1149
K R +P+ ++ C + + + + H G+RLEE+V VG G++RID+WIS
Sbjct: 24 KFRRSSPRAIYAR---CVSSNASAEAAEPAESRKGGHGGMRLEEAVPVGEGRSRIDAWIS 80
Query: 1148 SRIRG--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIP 975
+R+ G VSRAR+Q+SIR+GLV VNG ++KVSH +K GD +SCTVSELQPLRAE EDIP
Sbjct: 81 ARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIP 140
Query: 974 LDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECI 795
LDIVYED HVLVVNKPAHMVVHPAPGNANGTLVNAIL+HC++ T ++ RS +EC+
Sbjct: 141 LDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLA--RSSTGDECL 198
Query: 794 DSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
DSSD++I+ F +D+ + ED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 199 DSSDDDIDVFNVDQFATEDASSEVRNALVRPGIVHRLDKGTSGLLVVAK 247
Score = 179 bits (454), Expect = 5e-42
Identities = 83/123 (67%), Positives = 96/123 (78%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+F GGSALV W+LETGRTHQIRAHAK++G+PLLGDE YGGTKSMALSLL+PR
Sbjct: 314 RYKVREVFVGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTKSMALSLLRPRT 373
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFSHEI 290
PS H L+ +IS++ RPCLHA LGF HPH+G+ L FSCPPPDDFSE L LR +
Sbjct: 374 PSKYHSDLSNLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFSEVLDELRKVTSSD 433
Query: 289 GPN 281
N
Sbjct: 434 AQN 436
>ref|XP_008806145.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
[Phoenix dactylifera]
Length = 436
Score = 264 bits (675), Expect = 1e-67
Identities = 147/240 (61%), Positives = 180/240 (75%), Gaps = 9/240 (3%)
Frame = -1
Query: 1340 SYSLKLLRQNPKPRVSKLLCCS--TPTVDLGPDQTPQP----LRANHAGIRLEESVEVGA 1179
S+SL LLR++ + RVSK LC S T + D P+ +PQ LR NHAG+RLEESVE+GA
Sbjct: 17 SFSLDLLRRDRRDRVSKALCSSPTTSSRDSNPEPSPQRPQRVLRGNHAGLRLEESVEIGA 76
Query: 1178 GKTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPL 999
KTR+DSWISSRI+GVSRARIQSSIRSG V VNG T++KVSHIIK GD +SCTVSELQPL
Sbjct: 77 EKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGDMVSCTVSELQPL 136
Query: 998 RAEPEDIPLDIVYEDAHVLVVNKPAHM---VVHPAPGNANGTLVNAILNHCRLPTAASIS 828
RA+ EDIPLDIVYEDA+VLVVNKPAHM + P N T + A + C+ + ++
Sbjct: 137 RAKAEDIPLDIVYEDAYVLVVNKPAHMQWISLAPCLSEENYTKLEACFSDCQGCSPSTWK 196
Query: 827 NKRSLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
K E SSDNE+++++ D+SS E +SEN+EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 197 CKWHTE------SSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKGTSGLLVVAK 250
Score = 191 bits (485), Expect = 1e-45
Identities = 85/117 (72%), Positives = 103/117 (88%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV+++ GGS+LV W+LETGRTHQIRAHAK+LG+PLLGDE+YGGTKSMALSLL+PR
Sbjct: 318 RYKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRT 377
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFS 299
SS+HGHL+ ++S++QRPCLHA LGF HPHTGE+LRFSCPPPDDF+E L L+S S
Sbjct: 378 SSSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPDDFAEVLDQLQSIS 434
>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
brachyantha]
Length = 442
Score = 264 bits (675), Expect = 1e-67
Identities = 131/196 (66%), Positives = 162/196 (82%), Gaps = 2/196 (1%)
Frame = -1
Query: 1229 RANHAGIRLEESVEVGAGKTRIDSWISSRIRG--VSRARIQSSIRSGLVTVNGHTINKVS 1056
R H G RLEE+V G G++RID+WISSR+ G VSRAR+Q+SIR+GLV VNG ++KVS
Sbjct: 51 RGGHGGTRLEEAVPAGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSKVS 110
Query: 1055 HIIKEGDNISCTVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLV 876
H++K GD +SCTVSELQPLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNANGTLV
Sbjct: 111 HMVKGGDMVSCTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGTLV 170
Query: 875 NAILNHCRLPTAASISNKRSLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGI 696
NAIL+HC++ T ++ R+ +EC DSSD++I+ F +D+ + + +SE EAL+RPGI
Sbjct: 171 NAILHHCKISTFTCLA--RNSTDDECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRPGI 228
Query: 695 VHRLDKGTSGLLVIAK 648
VHRLDKGTSGLLV+AK
Sbjct: 229 VHRLDKGTSGLLVVAK 244
Score = 178 bits (451), Expect = 1e-41
Identities = 84/123 (68%), Positives = 98/123 (79%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV WKLETGRTHQIRAHAK+LG+PLLGDE YGGTKSMALSLL+PR
Sbjct: 311 RYKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRT 370
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFSHEI 290
S H L+ +I+++ RPCLHA LGF HPH+G+ L FSCPPPDDF+E L+ LR +
Sbjct: 371 SSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELRRVTPSD 430
Query: 289 GPN 281
G N
Sbjct: 431 GQN 433
>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
Length = 445
Score = 262 bits (670), Expect = 4e-67
Identities = 139/237 (58%), Positives = 176/237 (74%), Gaps = 5/237 (2%)
Frame = -1
Query: 1343 ISYSLKLLRQNPKPRVSKLLCCSTP---TVDLGPDQTPQPLRANHAGIRLEESVEVGAGK 1173
I+ +L L + + R S+ + S D + R H G RLEE+V G G+
Sbjct: 12 IATALSALLRRQRRRSSRCVGASHARCLAADANAEAVAPSRRGGHGGTRLEEAVPAGEGR 71
Query: 1172 TRIDSWISSRIRG--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPL 999
+RID+WIS+R+ G VSRARIQ+SIR+GLV VNG ++KVSH++K GD +SCTVSELQPL
Sbjct: 72 SRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVSCTVSELQPL 131
Query: 998 RAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKR 819
RAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNANGTLVNAIL+HC++ T ++ R
Sbjct: 132 RAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLA--R 189
Query: 818 SLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ +EC DSSD++I+ F ID+ + + +SE EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 190 NSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAK 246
Score = 178 bits (452), Expect = 8e-42
Identities = 83/113 (73%), Positives = 95/113 (84%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV W+LETGRTHQIRAHAK+LG+PLLGDE YGGTKSMALSLL+PR
Sbjct: 313 RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRT 372
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSML 311
PS H L+ MIS++ RPCLHA LGF HPH+G+ L FSCPPPDDF+E L+ L
Sbjct: 373 PSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNEL 425
>gb|ACG41877.1| RNA binding protein [Zea mays]
Length = 439
Score = 261 bits (668), Expect = 8e-67
Identities = 134/225 (59%), Positives = 169/225 (75%), Gaps = 2/225 (0%)
Frame = -1
Query: 1316 QNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRIDSWISSRIR 1137
++ +PR C S+ + + + H G RLEE+V VG G++R+D+WIS+R+
Sbjct: 26 RSSRPRAFYARCASSNA----SAEAAESRKGGHGGTRLEEAVPVGEGRSRVDAWISARLG 81
Query: 1136 G--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIPLDIV 963
G VSRAR+Q+SIR+GLV VNG ++KVSH +K GD +SCTVSELQPLRAE EDIPLDIV
Sbjct: 82 GGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIV 141
Query: 962 YEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECIDSSD 783
YED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HC++ T ++ RS +EC DSSD
Sbjct: 142 YEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLA--RSSAGDECPDSSD 199
Query: 782 NEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ + F +D+ +AED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 200 EDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAK 244
Score = 177 bits (449), Expect = 2e-41
Identities = 82/123 (66%), Positives = 97/123 (78%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV W+LETGRTHQIRAHAK++G+PLLGDE YGGT+SMALSLL+PR
Sbjct: 311 RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRS 370
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFSHEI 290
PS H L+ ++S++ RPCLHA SLGF HP +G+ L FSCPPPDDF E L LR +
Sbjct: 371 PSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFSCPPPDDFLEVLGELRRVTSSD 430
Query: 289 GPN 281
PN
Sbjct: 431 APN 433
>ref|XP_008647485.1| PREDICTED: RNA binding protein isoform X2 [Zea mays]
gi|670412658|ref|XP_008647486.1| PREDICTED: RNA binding
protein isoform X2 [Zea mays]
Length = 396
Score = 260 bits (665), Expect = 2e-66
Identities = 133/225 (59%), Positives = 169/225 (75%), Gaps = 2/225 (0%)
Frame = -1
Query: 1316 QNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRIDSWISSRIR 1137
++ +PR C S+ + + + H G RLEE+V VG G++R+D+WIS+R+
Sbjct: 26 RSSRPRAFYARCASSNA----SAEAAESRKGGHGGTRLEEAVPVGEGRSRVDAWISARLG 81
Query: 1136 G--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIPLDIV 963
G VSRAR+Q+SIR+GLV VNG ++KVSH +K GD +SCTVSELQPLRAE EDIPLDIV
Sbjct: 82 GGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIV 141
Query: 962 YEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECIDSSD 783
YED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HC++ T ++ RS +EC DS+D
Sbjct: 142 YEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLA--RSSAGDECPDSTD 199
Query: 782 NEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ + F +D+ +AED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 200 EDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAK 244
Score = 134 bits (337), Expect = 2e-28
Identities = 62/86 (72%), Positives = 74/86 (86%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV W+LETGRTHQIRAHAK++G+PLLGDE YGGT+SMALSLL+PR
Sbjct: 311 RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRS 370
Query: 469 PSSNHGHLALMISRLQRPCLHALSLG 392
PS H L+ ++S++ RPCLHA SLG
Sbjct: 371 PSKYHSGLSNLLSKVDRPCLHAASLG 396
>ref|XP_008647484.1| PREDICTED: RNA binding protein isoform X1 [Zea mays]
Length = 441
Score = 260 bits (665), Expect = 2e-66
Identities = 133/225 (59%), Positives = 169/225 (75%), Gaps = 2/225 (0%)
Frame = -1
Query: 1316 QNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRIDSWISSRIR 1137
++ +PR C S+ + + + H G RLEE+V VG G++R+D+WIS+R+
Sbjct: 26 RSSRPRAFYARCASSNA----SAEAAESRKGGHGGTRLEEAVPVGEGRSRVDAWISARLG 81
Query: 1136 G--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIPLDIV 963
G VSRAR+Q+SIR+GLV VNG ++KVSH +K GD +SCTVSELQPLRAE EDIPLDIV
Sbjct: 82 GGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIV 141
Query: 962 YEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECIDSSD 783
YED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HC++ T ++ RS +EC DS+D
Sbjct: 142 YEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLA--RSSAGDECPDSTD 199
Query: 782 NEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ + F +D+ +AED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 200 EDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAK 244
Score = 174 bits (441), Expect = 2e-40
Identities = 80/114 (70%), Positives = 94/114 (82%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV W+LETGRTHQIRAHAK++G+PLLGDE YGGT+SMALSLL+PR
Sbjct: 311 RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRS 370
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLR 308
PS H L+ ++S++ RPCLHA SLGF HP +G+ L FSCPPPDDF E L LR
Sbjct: 371 PSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFSCPPPDDFLEVLGELR 424
>ref|NP_001140404.1| RNA binding protein [Zea mays] gi|194699356|gb|ACF83762.1| unknown
[Zea mays] gi|413943105|gb|AFW75754.1| RNA binding
protein [Zea mays]
Length = 419
Score = 260 bits (665), Expect = 2e-66
Identities = 133/225 (59%), Positives = 169/225 (75%), Gaps = 2/225 (0%)
Frame = -1
Query: 1316 QNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRIDSWISSRIR 1137
++ +PR C S+ + + + H G RLEE+V VG G++R+D+WIS+R+
Sbjct: 26 RSSRPRAFYARCASSNA----SAEAAESRKGGHGGTRLEEAVPVGEGRSRVDAWISARLG 81
Query: 1136 G--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIPLDIV 963
G VSRAR+Q+SIR+GLV VNG ++KVSH +K GD +SCTVSELQPLRAE EDIPLDIV
Sbjct: 82 GGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIV 141
Query: 962 YEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECIDSSD 783
YED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HC++ T ++ RS +EC DS+D
Sbjct: 142 YEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLA--RSSAGDECPDSTD 199
Query: 782 NEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ + F +D+ +AED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 200 EDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAK 244
Score = 134 bits (337), Expect = 2e-28
Identities = 62/86 (72%), Positives = 74/86 (86%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV W+LETGRTHQIRAHAK++G+PLLGDE YGGT+SMALSLL+PR
Sbjct: 311 RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRS 370
Query: 469 PSSNHGHLALMISRLQRPCLHALSLG 392
PS H L+ ++S++ RPCLHA SLG
Sbjct: 371 PSKYHSGLSNLLSKVDRPCLHAASLG 396
>gb|AFW75755.1| hypothetical protein ZEAMMB73_425131 [Zea mays]
Length = 350
Score = 260 bits (665), Expect = 2e-66
Identities = 133/225 (59%), Positives = 169/225 (75%), Gaps = 2/225 (0%)
Frame = -1
Query: 1316 QNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRIDSWISSRIR 1137
++ +PR C S+ + + + H G RLEE+V VG G++R+D+WIS+R+
Sbjct: 26 RSSRPRAFYARCASSNA----SAEAAESRKGGHGGTRLEEAVPVGEGRSRVDAWISARLG 81
Query: 1136 G--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIPLDIV 963
G VSRAR+Q+SIR+GLV VNG ++KVSH +K GD +SCTVSELQPLRAE EDIPLDIV
Sbjct: 82 GGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIV 141
Query: 962 YEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECIDSSD 783
YED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HC++ T ++ RS +EC DS+D
Sbjct: 142 YEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLA--RSSAGDECPDSTD 199
Query: 782 NEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ + F +D+ +AED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 200 EDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAK 244
>gb|AFW75753.1| hypothetical protein ZEAMMB73_425131 [Zea mays]
Length = 312
Score = 260 bits (665), Expect = 2e-66
Identities = 133/225 (59%), Positives = 169/225 (75%), Gaps = 2/225 (0%)
Frame = -1
Query: 1316 QNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRIDSWISSRIR 1137
++ +PR C S+ + + + H G RLEE+V VG G++R+D+WIS+R+
Sbjct: 26 RSSRPRAFYARCASSNA----SAEAAESRKGGHGGTRLEEAVPVGEGRSRVDAWISARLG 81
Query: 1136 G--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIPLDIV 963
G VSRAR+Q+SIR+GLV VNG ++KVSH +K GD +SCTVSELQPLRAE EDIPLDIV
Sbjct: 82 GGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIV 141
Query: 962 YEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECIDSSD 783
YED HVLVVNKPAHMVVHPAPGNA GTLVNAIL+HC++ T ++ RS +EC DS+D
Sbjct: 142 YEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLA--RSSAGDECPDSTD 199
Query: 782 NEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ + F +D+ +AED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 200 EDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAK 244
>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
pseudouridine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|53791796|dbj|BAD53590.1| ribosomal large subunit
pseudouridine synthase-like [Oryza sativa Japonica Group]
gi|54291043|dbj|BAD61720.1| ribosomal large subunit
pseudouridine synthase-like [Oryza sativa Japonica Group]
gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222636236|gb|EEE66368.1| hypothetical protein
OsJ_22675 [Oryza sativa Japonica Group]
Length = 445
Score = 260 bits (664), Expect = 2e-66
Identities = 138/237 (58%), Positives = 175/237 (73%), Gaps = 5/237 (2%)
Frame = -1
Query: 1343 ISYSLKLLRQNPKPRVSKLLCCSTP---TVDLGPDQTPQPLRANHAGIRLEESVEVGAGK 1173
I+ +L L + + R S+ + S D + R H G RLEE+V G G+
Sbjct: 12 IATALSALLRRQRRRSSRCVGASHARCLAADANAEAVAPSRRGGHGGTRLEEAVPAGEGR 71
Query: 1172 TRIDSWISSRIRG--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPL 999
+RID+WIS+R+ G VSRARIQ+SIR+GLV VNG ++KVSH++K GD +SCTV ELQPL
Sbjct: 72 SRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVSCTVLELQPL 131
Query: 998 RAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKR 819
RAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNANGTLVNAIL+HC++ T ++ R
Sbjct: 132 RAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLA--R 189
Query: 818 SLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ +EC DSSD++I+ F ID+ + + +SE EAL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 190 NSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAK 246
Score = 178 bits (452), Expect = 8e-42
Identities = 83/113 (73%), Positives = 95/113 (84%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV W+LETGRTHQIRAHAK+LG+PLLGDE YGGTKSMALSLL+PR
Sbjct: 313 RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRT 372
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSML 311
PS H L+ MIS++ RPCLHA LGF HPH+G+ L FSCPPPDDF+E L+ L
Sbjct: 373 PSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNEL 425
>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
tuberosum]
Length = 431
Score = 259 bits (661), Expect = 5e-66
Identities = 138/239 (57%), Positives = 176/239 (73%), Gaps = 10/239 (4%)
Frame = -1
Query: 1334 SLKLLRQNPKP----RVSKLLCCSTPTV------DLGPDQTPQPLRANHAGIRLEESVEV 1185
S LL QNPKP RVS +C + D PD+ P R+N++G++LEE+V+
Sbjct: 8 SFSLLPQNPKPFSLSRVSSFICRAFTKFPGDSDSDDSPDEIPGR-RSNYSGVKLEETVDG 66
Query: 1184 GAGKTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQ 1005
GK R+DSW+SSRI GVSRAR+QSSIRSGLV+VNG +KVSH++K GD + CT+++L+
Sbjct: 67 KTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLK 126
Query: 1004 PLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISN 825
PLRAEPEDIPLDIV+ED HVLVVNKPAHMVVHPAPGNA GTLV+ IL+HC LPT + +
Sbjct: 127 PLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGE 186
Query: 824 KRSLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ +AE D+SD+E+ F ++S D +S E+ +RPGIVHRLDKGTSGLLV+AK
Sbjct: 187 EVLSDAE---DASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAK 242
Score = 166 bits (421), Expect = 3e-38
Identities = 77/119 (64%), Positives = 97/119 (81%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV+E A GGSALV W+LETGRTHQIRAHAK+LG+PL+GDE+YGGTK+MALSLL+P+
Sbjct: 310 RYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPKT 369
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFSHE 293
P HG L+ ++S++ RPCLHAL+LGF HP TGE + F+ PP DF+E LS LR+ + E
Sbjct: 370 PPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRAINTE 428
>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Setaria
italica]
Length = 437
Score = 259 bits (661), Expect = 5e-66
Identities = 134/233 (57%), Positives = 175/233 (75%), Gaps = 2/233 (0%)
Frame = -1
Query: 1340 SYSLKLLRQNPKPRVSKLLCCSTPTVDLGPDQTPQPLRANHAGIRLEESVEVGAGKTRID 1161
++S L R+ +P ++ + + P++ L G RLEE+V G G++R+D
Sbjct: 16 TFSALLRRRTVRPCYARCVSSNARAEAAEPERRSGGL----TGTRLEEAVPAGEGRSRVD 71
Query: 1160 SWISSRIRG--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEP 987
+WIS+R+ G VSRAR+Q+SIR+GLV VNG ++KVSH++K GD +SCTVSELQPLRAE
Sbjct: 72 AWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDLVSCTVSELQPLRAEA 131
Query: 986 EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEA 807
EDIPLDIVYED HVLVVNKPAHMVVHPAPGNANGTLVNAIL+HCR+ T ++ R+
Sbjct: 132 EDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRISTFTCLA--RNSTG 189
Query: 806 EECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+EC DSSD++++ F +D+ + ED +SE AL+RPGIVHRLDKGTSGLLV+AK
Sbjct: 190 DECPDSSDDDVDVFDVDQFTTEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAK 242
Score = 181 bits (459), Expect = 1e-42
Identities = 85/123 (69%), Positives = 98/123 (79%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+FA GGSALV W+LETGRTHQIRAHAK+LG+PLLGDE YGGTKSMALSLL+PR
Sbjct: 309 RYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRT 368
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFSHEI 290
PS H L+ +IS++ RPCLHA LGF HPH+G+ L FSCPPPDDF+E L LR +
Sbjct: 369 PSKYHSGLSDLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLDELRRVTSAD 428
Query: 289 GPN 281
G N
Sbjct: 429 GQN 431
>ref|XP_003563280.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Brachypodium
distachyon] gi|721612963|ref|XP_010239676.1| PREDICTED:
RNA pseudouridine synthase 2, chloroplastic [Brachypodium
distachyon] gi|721612966|ref|XP_010239679.1| PREDICTED:
RNA pseudouridine synthase 2, chloroplastic [Brachypodium
distachyon]
Length = 439
Score = 258 bits (660), Expect = 6e-66
Identities = 137/229 (59%), Positives = 174/229 (75%), Gaps = 3/229 (1%)
Frame = -1
Query: 1325 LLRQNPKPRVSKLLCCSTPTVDLGPDQTPQPLR-ANHAGIRLEESVEVGAGKTRIDSWIS 1149
LLR+N R S+ C S D + P P R HAG RLEE+V G G++R+D+WIS
Sbjct: 19 LLRRNTALRASRPRCLSA---DANVEALPAPSRRGGHAGTRLEEAVPAGEGRSRVDAWIS 75
Query: 1148 SRIRG--VSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQPLRAEPEDIP 975
+R+ G VSRAR+Q+SIR+GLV VNG ++KVS +K GD +SCTVSELQPLRAE EDIP
Sbjct: 76 ARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSQTVKGGDTVSCTVSELQPLRAEAEDIP 135
Query: 974 LDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISNKRSLEAEECI 795
LDIVYED H+LVVNKPAHMVVHPAPGNANGTLVNAIL+HC++ T ++ R+ +EC
Sbjct: 136 LDIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLA--RNSIDDECP 193
Query: 794 DSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+SSD++I+ F +D+ + E +SE +A++RPGIVHRLDKGTSGLLV+AK
Sbjct: 194 ESSDDDIDVFDVDQFNGE-VSSEVRDAIVRPGIVHRLDKGTSGLLVVAK 241
Score = 179 bits (454), Expect = 5e-42
Identities = 83/114 (72%), Positives = 94/114 (82%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV E+F GGSALV WKLETGRTHQIRAHAK+LG PLLGDE YGG+KSMALSLL+PR
Sbjct: 308 RYKVREVFCSGGSALVEWKLETGRTHQIRAHAKYLGYPLLGDETYGGSKSMALSLLRPRT 367
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLR 308
PS HG L+ +IS++ RPCLHA LGF HPH+G+ L FSCPPPDDF+E L LR
Sbjct: 368 PSRYHGDLSNLISKIDRPCLHAALLGFKHPHSGKMLEFSCPPPDDFAEVLDELR 421
>ref|XP_010320444.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
[Solanum lycopersicum]
Length = 430
Score = 258 bits (659), Expect = 8e-66
Identities = 138/239 (57%), Positives = 174/239 (72%), Gaps = 10/239 (4%)
Frame = -1
Query: 1334 SLKLLRQNPKP----RVSKLLCCSTPTV------DLGPDQTPQPLRANHAGIRLEESVEV 1185
S LL QNPKP RVS +C + D PD+ P R+N++G++LEE+V+
Sbjct: 8 SFSLLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGR-RSNYSGVKLEETVDS 66
Query: 1184 GAGKTRIDSWISSRIRGVSRARIQSSIRSGLVTVNGHTINKVSHIIKEGDNISCTVSELQ 1005
GK R+DSW+SSRI GVSRAR+QSSIRSGLV+VNG +KVSH++K GD + CT+++L+
Sbjct: 67 KTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLK 126
Query: 1004 PLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILNHCRLPTAASISN 825
PLRAEPEDIPLDIVYED HVLVVNKPAHMVVHPAPGNA GTLV+ IL+HC LPT +
Sbjct: 127 PLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGE 186
Query: 824 KRSLEAEECIDSSDNEIEDFFIDKSSAEDFNSENNEALLRPGIVHRLDKGTSGLLVIAK 648
+ + E D+SD+E+ F ++S D +S E+ +RPGIVHRLDKGTSGLLV+AK
Sbjct: 187 EVLSDGE---DASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAK 242
Score = 152 bits (384), Expect = 6e-34
Identities = 75/126 (59%), Positives = 93/126 (73%), Gaps = 2/126 (1%)
Frame = -2
Query: 649 RYKVVEIFADGGSALVRWKLETGRTHQIRAHAKHLGVPLLGDELYGGTKSMALSLLKPRI 470
RYKV+E A GGSALV W+LETGRTHQ HLG+PL+GDE+YGGTK+MALSLL+P+
Sbjct: 310 RYKVIEKLAGGGSALVEWRLETGRTHQ------HLGIPLMGDEVYGGTKNMALSLLQPKT 363
Query: 469 PSSNHGHLALMISRLQRPCLHALSLGFSHPHTGEYLRFSCPPPDDFSEALSMLRSFSHE- 293
P HG L+ ++S++ RPCLHAL+LGF HP TGE + F+ PP DF+E LS LR+ E
Sbjct: 364 PPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEK 423
Query: 292 -IGPNY 278
PNY
Sbjct: 424 VTHPNY 429