BLASTX nr result
ID: Anemarrhena21_contig00018017
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00018017
(422 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 109 5e-33
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 109 4e-32
emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera] 119 4e-32
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 113 4e-32
ref|XP_010108259.1| Retrovirus-related Pol polyprotein from tran... 119 4e-32
gb|EMT06479.1| hypothetical protein F775_22266 [Aegilops tauschii] 107 1e-31
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 113 3e-31
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 107 5e-31
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 108 7e-31
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 107 5e-30
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 103 7e-30
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 103 7e-30
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 103 2e-29
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 107 4e-29
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 107 4e-29
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 103 4e-29
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 106 6e-29
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-... 103 7e-29
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 108 1e-28
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 102 2e-28
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 109 bits (272), Expect(3) = 5e-33
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAKG+ Q G+DY++TFSPV MLKSIR++LAI AY+DY
Sbjct: 841 CKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDY 900
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 901 EIWQMDVKTAF 911
Score = 57.0 bits (136), Expect(3) = 5e-33
Identities = 24/49 (48%), Positives = 38/49 (77%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++PKTYEEAM D++K + MK+++ES+Y N+VW LVDPP+ V ++
Sbjct: 792 NDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIE 840
Score = 21.9 bits (45), Expect(3) = 5e-33
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG L ED+Y
Sbjct: 911 FLNGNLSEDVY 921
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 109 bits (272), Expect(3) = 4e-32
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWI+KRKR V+ FK RLVAKGYTQ G+DYE+TFSPV MLKSIR+LL+I +Y+Y
Sbjct: 851 CKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNY 910
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 911 EIWQMDVKTAF 921
Score = 53.9 bits (128), Expect(3) = 4e-32
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +3
Query: 6 EDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRV 137
EDP TY++AM+D+D + + M +MES+Y N VWTLVD P+ V
Sbjct: 803 EDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDV 846
Score = 21.9 bits (45), Expect(3) = 4e-32
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG LEE IY
Sbjct: 921 FLNGNLEESIY 931
>emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]
Length = 961
Score = 119 bits (297), Expect(3) = 4e-32
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWI+KRKRG + VE FK RLVAKG+TQ G+DYE TFSPV MLKSIR+LL+I AYYDY
Sbjct: 627 CKWIYKRKRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVAMLKSIRILLSIAAYYDY 686
Query: 325 EIWQMDVKTTF 357
EIWQMDVKTTF
Sbjct: 687 EIWQMDVKTTF 697
Score = 43.1 bits (100), Expect(3) = 4e-32
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRV 137
D+D T++ AM D+D MK ++ES+Y N VW LVD P +
Sbjct: 578 DDDSLTFKMAMDDVDRETWQEAMKLEIESMYSNSVWELVDLPEGI 622
Score = 23.1 bits (48), Expect(3) = 4e-32
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG+LEE IY
Sbjct: 697 FLNGHLEETIY 707
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 113 bits (283), Expect(3) = 4e-32
Identities = 53/71 (74%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWI+K KRG + VE FK RLVAKG+TQ G+DYE TFSPV MLKSIR+LL+I AYYDY
Sbjct: 191 CKWIYKXKRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVXMLKSIRILLSIXAYYDY 250
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 251 EIWQMDVKTXF 261
Score = 48.5 bits (114), Expect(3) = 4e-32
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRV 137
D+DP T++ AM D+D K MK ++ES+Y N VW LVD P +
Sbjct: 142 DDDPLTFKMAMDDVDREKWQEAMKLEIESMYSNSVWKLVDLPEGI 186
Score = 23.1 bits (48), Expect(3) = 4e-32
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG+LEE IY
Sbjct: 261 FLNGHLEETIY 271
>ref|XP_010108259.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis] gi|587931412|gb|EXC18499.1|
Retrovirus-related Pol polyprotein from transposon TNT
1-94 [Morus notabilis]
Length = 414
Score = 119 bits (299), Expect(3) = 4e-32
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWI+KRKRG D VE +K RLVAKGYTQ G+DYE+TFSPV MLKSIR+LLAI AY+DY
Sbjct: 328 CKWIYKRKRGVDGKVETYKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLAIAAYFDY 387
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 388 EIWQMDVKTPF 398
Score = 41.6 bits (96), Expect(3) = 4e-32
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 6 EDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRV 137
EDP T+ +AM D + + MK ++ES++ N VW LVD P V
Sbjct: 280 EDPSTFRDAMDDSNKEEWQAAMKLEIESMHSNSVWQLVDLPEGV 323
Score = 23.9 bits (50), Expect(3) = 4e-32
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNGYL+E IY
Sbjct: 398 FLNGYLDETIY 408
>gb|EMT06479.1| hypothetical protein F775_22266 [Aegilops tauschii]
Length = 898
Score = 107 bits (268), Expect(3) = 1e-31
Identities = 49/70 (70%), Positives = 59/70 (84%)
Frame = +1
Query: 148 KWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDYE 327
KWIFK+K AD NV ++K RLVAKG+ Q GIDY++TFSPV MLKS+R++LAI A+YDYE
Sbjct: 800 KWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYE 859
Query: 328 IWQMDVKTTF 357
IWQMDVKT F
Sbjct: 860 IWQMDVKTAF 869
Score = 52.0 bits (123), Expect(3) = 1e-31
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +3
Query: 6 EDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPN 131
++P YEEAM +D++K + MK++M S+Y NKVWTLVD P+
Sbjct: 751 DEPTNYEEAMVSLDSAKWLEAMKSEMGSMYENKVWTLVDLPD 792
Score = 23.9 bits (50), Expect(3) = 1e-31
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG+LEE++Y
Sbjct: 869 FLNGFLEEELY 879
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 113 bits (282), Expect(2) = 3e-31
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWI+K+KRG D + +K LVAKGYTQ GIDYE+TFSPV MLKSIR+LL+I AY+DY
Sbjct: 156 CKWIYKKKRGIDGKXZTYKAXLVAKGYTQKEGIDYEETFSPVAMLKSIRILLSIAAYFDY 215
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 216 EIWQMDVKTAF 226
Score = 48.9 bits (115), Expect(2) = 3e-31
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 9 DPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRV 137
+P Y++A+ D DA K + MK++MES+Y N+VW LV+PP V
Sbjct: 109 EPVCYDDALQDKDADKWLVAMKSEMESMYSNQVWELVEPPKGV 151
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 107 bits (268), Expect(3) = 5e-31
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAKG+ Q G+DY++TFSP MLKSIR++LAI AY++Y
Sbjct: 626 CKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPFAMLKSIRIVLAIAAYFNY 685
Query: 325 EIWQMDVKTTF 357
EIWQMDVKTTF
Sbjct: 686 EIWQMDVKTTF 696
Score = 50.8 bits (120), Expect(3) = 5e-31
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
D++P TY EAM D+ K + MK+++ES++ N+VW LVDPP+ V ++
Sbjct: 577 DDEPTTYVEAMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 625
Score = 22.7 bits (47), Expect(3) = 5e-31
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG L+ED+Y
Sbjct: 696 FLNGNLDEDVY 706
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 108 bits (269), Expect(2) = 7e-31
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAKG+ Q G+DY++TFSPV MLKSIR++LAI AY+DY
Sbjct: 771 CKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDY 830
Query: 325 EIWQMDVKTTF 357
EIWQM+VKT F
Sbjct: 831 EIWQMEVKTAF 841
Score = 52.4 bits (124), Expect(2) = 7e-31
Identities = 22/49 (44%), Positives = 36/49 (73%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
++ P TYEEAM +D+ K + MK+++ES++ N+VW LVDPP+ V ++
Sbjct: 722 NDKPTTYEEAMVGLDSEKCLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 770
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 107 bits (267), Expect(2) = 5e-30
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAKG+ Q G+DY++TFSPV MLKSI+++LAI AY+DY
Sbjct: 1327 CKWVFKKKTYVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIQIVLAIAAYFDY 1386
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 1387 EIWQMDVKTAF 1397
Score = 50.4 bits (119), Expect(2) = 5e-30
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TYEEAM D+ K MK+++ES++ N+VW LVDPP+ V ++
Sbjct: 1278 NDEPTTYEEAMVGPDSEKWPGAMKSEIESMHVNQVWNLVDPPDGVKAIE 1326
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 103 bits (257), Expect(3) = 7e-30
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWIFK+ D V I+ RLVAKG+ Q G+DY++TFSPV MLKSIR++LAI AY+DY
Sbjct: 790 CKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDY 849
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 850 EIWQMDVKTAF 860
Score = 51.2 bits (121), Expect(3) = 7e-30
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TYEEAM D K + MK+++ES++ N+VW LVDPP+ V ++
Sbjct: 741 NDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 789
Score = 22.7 bits (47), Expect(3) = 7e-30
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG L+ED+Y
Sbjct: 860 FLNGNLDEDVY 870
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 103 bits (257), Expect(3) = 7e-30
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWIFK+ D V I+ RLVAKG+ Q G+DY++TFSPV MLKSIR++LAI AY+DY
Sbjct: 703 CKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDY 762
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 763 EIWQMDVKTAF 773
Score = 51.2 bits (121), Expect(3) = 7e-30
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TYEEAM D K + MK+++ES++ N+VW LVDPP+ V ++
Sbjct: 654 NDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 702
Score = 22.7 bits (47), Expect(3) = 7e-30
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG L+ED+Y
Sbjct: 773 FLNGNLDEDVY 783
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 103 bits (256), Expect(3) = 2e-29
Identities = 45/71 (63%), Positives = 58/71 (81%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV ++K +LVAKG+ Q G+DY++TFSP+ MLKSIR++LAI AY+DY
Sbjct: 724 CKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDY 783
Query: 325 EIWQMDVKTTF 357
EIWQMDVK F
Sbjct: 784 EIWQMDVKIAF 794
Score = 50.1 bits (118), Expect(3) = 2e-29
Identities = 21/49 (42%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TYEE M D+ K + MK+++ES++ N+VW LVDPP+ V ++
Sbjct: 675 NDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 723
Score = 22.7 bits (47), Expect(3) = 2e-29
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG L+ED+Y
Sbjct: 794 FLNGNLDEDVY 804
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 107 bits (268), Expect(2) = 4e-29
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAKG+ Q G++Y++TFSPV MLKSIR++LAI AY+DY
Sbjct: 395 CKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDY 454
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 455 EIWQMDVKTAF 465
Score = 47.0 bits (110), Expect(2) = 4e-29
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TYEEAM + K + MK+K+ES++ N+VW LVDP + V ++
Sbjct: 346 NDEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDPLDSVKAIE 394
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 107 bits (268), Expect(2) = 4e-29
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAKG+ Q G++Y++TFSPV MLKSIR++LAI AY+DY
Sbjct: 350 CKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDY 409
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 410 EIWQMDVKTAF 420
Score = 47.0 bits (110), Expect(2) = 4e-29
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TYEEAM + K + MK+K+ES++ N+VW LVDP + V ++
Sbjct: 301 NDEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDPLDSVKAIE 349
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 103 bits (258), Expect(3) = 4e-29
Identities = 46/69 (66%), Positives = 56/69 (81%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+ D NV I+K RLVAKG+ Q G+DY++TFSPV MLKSIR++L I AY+DY
Sbjct: 547 CKWVFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLTIAAYFDY 606
Query: 325 EIWQMDVKT 351
EIWQMDVKT
Sbjct: 607 EIWQMDVKT 615
Score = 50.4 bits (119), Expect(3) = 4e-29
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P YEEAM D+ K + MK+K+ES++ N+VW LVDPP+ V ++
Sbjct: 498 NDEPTIYEEAMVGPDSEKWLGAMKSKIESMHVNQVWNLVDPPDGVKAIK 546
Score = 20.4 bits (41), Expect(3) = 4e-29
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 359 LNGYLEEDIY 388
LNG L+ED+Y
Sbjct: 618 LNGNLDEDVY 627
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 106 bits (264), Expect(3) = 6e-29
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWIFK+K D N++I+K LVAKGY Q GIDY++T+SPV MLKSIR+LLA A+YDY
Sbjct: 488 CKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDY 547
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 548 EIWQMDVKTAF 558
Score = 47.0 bits (110), Expect(3) = 6e-29
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3
Query: 6 EDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
++P +YEEA+ D+ K + K++MES+ NKVWTLVD P+ V ++
Sbjct: 440 DEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIE 487
Score = 21.2 bits (43), Expect(3) = 6e-29
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG LEE +Y
Sbjct: 558 FLNGNLEEHVY 568
>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550176|gb|ABA92973.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 591
Score = 103 bits (258), Expect(3) = 7e-29
Identities = 46/71 (64%), Positives = 57/71 (80%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAK Y Q G+DY++TFSPV MLKSI+++LAI Y+DY
Sbjct: 474 CKWVFKKKTDVDGNVHIYKIRLVAKSYRQIQGVDYDETFSPVAMLKSIQIVLAIAVYFDY 533
Query: 325 EIWQMDVKTTF 357
EIW+MDVKT F
Sbjct: 534 EIWKMDVKTAF 544
Score = 49.7 bits (117), Expect(3) = 7e-29
Identities = 20/49 (40%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TYEE M D+ K + MK+++ES++ N++W LVDPP+ V ++
Sbjct: 425 NDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQIWNLVDPPDGVKAIE 473
Score = 20.4 bits (41), Expect(3) = 7e-29
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLN L+ED+Y
Sbjct: 544 FLNANLDEDVY 554
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 108 bits (269), Expect(2) = 1e-28
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKW+FK+K D NV I+K RLVAKG+ Q G+DY++TFSPV MLKSIR++LAI AY+DY
Sbjct: 761 CKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDY 820
Query: 325 EIWQMDVKTTF 357
EIWQM+VKT F
Sbjct: 821 EIWQMEVKTAF 831
Score = 44.7 bits (104), Expect(2) = 1e-28
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Frame = +3
Query: 6 EDPKTYE---EAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
E PK Y+ AM +D+ K + MK+++ES++ N+VW LVDPP+ V ++
Sbjct: 710 EGPKEYDVHLRAMVGLDSEKCLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 760
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 102 bits (255), Expect(3) = 2e-28
Identities = 48/71 (67%), Positives = 57/71 (80%)
Frame = +1
Query: 145 CKWIFKRKRGADRNVEIFKTRLVAKGYTQN*GIDYEKTFSPVVMLKSIRMLLAITAYYDY 324
CKWI+K+K D NV I K RLVAKG+ Q G+DY++TFS V MLKSIR++LAI AY+DY
Sbjct: 837 CKWIYKKKIDMDGNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDY 896
Query: 325 EIWQMDVKTTF 357
EIWQMDVKT F
Sbjct: 897 EIWQMDVKTAF 907
Score = 47.8 bits (112), Expect(3) = 2e-28
Identities = 20/49 (40%), Positives = 35/49 (71%)
Frame = +3
Query: 3 DEDPKTYEEAMSDIDASK*VNTMKAKMESIYHNKVWTLVDPPNRVNRMQ 149
+++P TY+EAM D D+ K + MK++++S+ N+VW LVDP + V ++
Sbjct: 788 NDEPNTYKEAMMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIE 836
Score = 21.9 bits (45), Expect(3) = 2e-28
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 356 FLNGYLEEDIY 388
FLNG L ED+Y
Sbjct: 907 FLNGKLSEDVY 917