BLASTX nr result
ID: Anemarrhena21_contig00017435
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00017435
(506 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera] 47 5e-11
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 46 5e-10
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 47 7e-10
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 47 1e-09
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 46 2e-09
gb|AFB73912.1| polyprotein [Citrus sinensis] 47 3e-09
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 46 3e-09
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 46 5e-09
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 43 2e-08
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 47 8e-08
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 43 8e-08
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 43 9e-08
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 43 1e-07
emb|CAN59934.1| hypothetical protein VITISV_001876 [Vitis vinifera] 52 1e-07
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 43 2e-07
emb|CBG76256.1| OO_Ba0005L10-OO_Ba0081K17.7 [Oryza officinalis] 47 2e-07
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 40 3e-07
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera] 44 6e-07
emb|CAN75724.1| hypothetical protein VITISV_040386 [Vitis vinifera] 45 8e-07
emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera] 48 1e-06
>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
Length = 344
Score = 46.6 bits (109), Expect(3) = 5e-11
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKM 499
WF Y+P DGG V+M N ACKVVGI I++KM
Sbjct: 251 WFSTYQPIDGGKVLMGNKVACKVVGIHXIQIKM 283
Score = 44.3 bits (103), Expect(3) = 5e-11
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = +1
Query: 4 LEDVRQMLQNNKLMK---KTESNEEASGLVAKER-RERSQSRGPKRGSVASSGVTCFYCK 171
++DVR L + +L K K+ + GLVA+ R R+++ R + S + CF CK
Sbjct: 126 IKDVRVALNSRELKKMVFKSRKYDSGEGLVARGRTRKKNNGRRGRSRSKSRGNNKCFKCK 185
Query: 172 KSGHIKRNYFKYQEMLKKNGGKESDGASTSEKSDQAGFAKELDENPCDVLTV 327
K GH +N GKE+ + S A FAKE + N DVL V
Sbjct: 186 KEGHYVKN-------XPDRKGKEN---KRNYNSGDATFAKE-NSNTTDVLLV 226
Score = 22.3 bits (46), Expect(3) = 5e-11
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD GC YHM
Sbjct: 233 DEWILDSGCSYHM 245
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 45.8 bits (107), Expect(3) = 5e-10
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M +D C+V GIG +++KMFD
Sbjct: 258 WFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFD 292
Score = 43.1 bits (100), Expect(3) = 5e-10
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Frame = +1
Query: 4 LEDVRQMLQNNKLMKKTE----SNEEASGLVAKERRERSQSRGPKRGSVASSG------- 150
L++V L + MKK SN +A GLV + R+++ ++ R +SS
Sbjct: 113 LKEVYDALHTKEKMKKMVPSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGRSKSR 172
Query: 151 ---VTCFYCKKSGHIKRNYFKYQEMLKK------NGGKESDGAS---TSEKSD 273
+C YCK+ GH +K Q+ K+ G KE +G + T EKSD
Sbjct: 173 GRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDEKSD 225
Score = 20.8 bits (42), Expect(3) = 5e-10
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD C YHM
Sbjct: 240 DQWILDTACTYHM 252
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 47.4 bits (111), Expect(2) = 7e-10
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 389 AQEKWFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
+ + WF Y GGTV+M +D C+V GIG +++KMFD
Sbjct: 297 SDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFD 335
Score = 42.4 bits (98), Expect(2) = 7e-10
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Frame = +1
Query: 37 KLMKKTESNEEASGLVAKERRERSQSRGPKRGSVASS--GVT--------CFYCKKSGHI 186
K++ SN +A GLV + R+++ ++ R +SS G T C YCK+ GH
Sbjct: 186 KMVTSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYKSCKYCKRDGHD 245
Query: 187 KRNYFKYQEMLKK------NGGKESDGAS---TSEKSD------QAGFAKELDEN 306
+K Q+ K+ G KE +G + T EKSD AG A+ D++
Sbjct: 246 ISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQD 300
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 46.6 bits (109), Expect(3) = 1e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M +D C+V GIG +++KMFD
Sbjct: 225 WFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFD 259
Score = 41.2 bits (95), Expect(3) = 1e-09
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Frame = +1
Query: 4 LEDVRQMLQNNKLMKKTE----SNEEASGLVAKERRE--------RSQSRGPKRGSVASS 147
L++V L + MKK SN +A GLV + R++ R +S RG S
Sbjct: 80 LKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSKSR 139
Query: 148 G--VTCFYCKKSGHIKRNYFKYQEMLKK------NGGKESDGAS---TSEKSD 273
G +C YCK+ GH +K Q+ K+ G KE +G + T EKSD
Sbjct: 140 GRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSD 192
Score = 20.8 bits (42), Expect(3) = 1e-09
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD C YHM
Sbjct: 207 DQWILDTACTYHM 219
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 46.2 bits (108), Expect(3) = 2e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M +D C+V GIG +++KMFD
Sbjct: 316 WFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFD 350
Score = 40.4 bits (93), Expect(3) = 2e-09
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 23/113 (20%)
Frame = +1
Query: 4 LEDVRQMLQNNKLMKKTE----SNEEASGLVAK--------ERRERSQSRGPKRGSVASS 147
L++V L + MKK SN +A GLV + + R +S RG S
Sbjct: 171 LKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSR 230
Query: 148 G--VTCFYCKKSGHIKRNYFKYQEMLKK------NGGKESDGAS---TSEKSD 273
G +C YCK+ GH +K Q+ K+ G KE +G + T EKSD
Sbjct: 231 GRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSD 283
Score = 20.8 bits (42), Expect(3) = 2e-09
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD C YHM
Sbjct: 298 DQWILDTACTYHM 310
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 46.6 bits (109), Expect(2) = 3e-09
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 389 AQEKWFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
++ +WF Y P GG+V M ND A ++ GIG I++KMFD
Sbjct: 304 SRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFD 342
Score = 41.2 bits (95), Expect(2) = 3e-09
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Frame = +1
Query: 7 EDVRQMLQNNKLMKKTESNEEASGLVAKE---RRERSQSRGP-------KRGSVASSGVT 156
+DV + N + +K + N +AS A+ R RS RGP + S + V
Sbjct: 170 DDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVK 229
Query: 157 CFYCKKSGHIKRNYFKYQEMLKKNGGKESDG-------ASTSEKSD----QAGFAKELDE 303
C+ C K GH+K+ + Q K+ GKE + ASTS+ + +A E +
Sbjct: 230 CYNCGKKGHVKKECWSNQ---KRREGKEPESSNAQGCVASTSDDGEILYSEATIVSEGRK 286
Query: 304 NPCDVLTVLSG 336
DV + SG
Sbjct: 287 RLSDVWLIDSG 297
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 46.2 bits (108), Expect(3) = 3e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M +D C+V GIG +++KMFD
Sbjct: 301 WFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFD 335
Score = 40.0 bits (92), Expect(3) = 3e-09
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Frame = +1
Query: 4 LEDVRQMLQNNKLMKKTE----SNEEASGLVAK--------ERRERSQSRGPKRGSVASS 147
L++V L + MKK SN +A GLV + + R +S RG S
Sbjct: 156 LKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKSSSSYRGRSKSR 215
Query: 148 G--VTCFYCKKSGHIKRNYFKYQEMLKKNG-----GKESD----GASTSEKSD 273
G +C YCK+ GH +K Q+ K+ G GK+ D T EKSD
Sbjct: 216 GRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSD 268
Score = 20.8 bits (42), Expect(3) = 3e-09
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD C YHM
Sbjct: 283 DQWILDTACTYHM 295
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 46.2 bits (108), Expect(3) = 5e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M +D C+V GIG +++KMFD
Sbjct: 133 WFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFD 167
Score = 39.3 bits (90), Expect(3) = 5e-09
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Frame = +1
Query: 37 KLMKKTESNEEASGLVAK--------ERRERSQSRGPKRGSVASSG--VTCFYCKKSGHI 186
K++ SN +A GLV + + R +S RG S G +C YCK+ GH
Sbjct: 3 KMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHD 62
Query: 187 KRNYFKYQEMLKKNG-----GKESD----GASTSEKSD 273
+K Q+ K+ G GK+ D T EKSD
Sbjct: 63 ISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSD 100
Score = 20.8 bits (42), Expect(3) = 5e-09
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD C YHM
Sbjct: 115 DQWILDTACTYHM 127
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 42.7 bits (99), Expect(2) = 2e-08
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +2
Query: 389 AQEKWFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
++++WF Y P GG+V +D A +++GIG I++KM+D
Sbjct: 294 SRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYD 332
Score = 42.0 bits (97), Expect(2) = 2e-08
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +1
Query: 67 EASGLVAKERRERSQSRGPKRGSVASSGVTCFYCKKSGHIKRNYFKYQEMLKKNGGKESD 246
EA ++ ER QS G R + +TC+ C K GH+K++ + L +N + +
Sbjct: 198 EALTVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKKGHLKKDCWN----LAQNSNPQGN 253
Query: 247 GASTSEKSD----QAGFAKELDENPCDVLTVLSG 336
ASTS+ +A A+E + D+ + SG
Sbjct: 254 VASTSDDGSALCCEASIAREGRKRFADIWLIDSG 287
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 47.0 bits (110), Expect(2) = 8e-08
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y P GG V+M ++ CKV G+G I++KMFD
Sbjct: 258 WFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFD 292
Score = 35.8 bits (81), Expect(2) = 8e-08
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Frame = +1
Query: 4 LEDVRQMLQNNKLMKKTE----SNEEASGLVAKERRE--------RSQSRGPKRGSVASS 147
L++V L + MKK SN + LV + R++ R +S RG S
Sbjct: 113 LQEVYDALHAKEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNKSRDKSSSGYRGRSKSR 172
Query: 148 G--VTCFYCKKSGHIKRNYFKYQEMLKKNGGKESDGASTSEKSDQAGFAKELDENP-CDV 318
G +C YCK+ GH + +K Q K G + G ++ +Q A D P ++
Sbjct: 173 GRYKSCKYCKRGGHDISDCWKLQNKEKHKGNYKPKG----KQEEQGKAAVATDNKPDAEL 228
Query: 319 LTVLSGKAKFLMLCCLTWG-AYITCPRK 399
L +G + L G Y CP +
Sbjct: 229 LVAYAGCVQTSDEWLLDTGCTYHMCPNR 256
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 43.1 bits (100), Expect(2) = 8e-08
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 392 QEKWFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
+ +WF Y DGG++ M N + CKVVG G I+++ D
Sbjct: 292 RREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHD 329
Score = 39.7 bits (91), Expect(2) = 8e-08
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Frame = +1
Query: 4 LEDVRQMLQNNKLMKK---TESNEEASGLVAKERRERSQSRGPKRGSVASSGV----TCF 162
LE+VR L + +L K T ++ + SGL R+ R G K+ S G C
Sbjct: 169 LEEVRSALHSRELRHKANGTSTDIQPSGLFTSSRKGRKN--GGKKNKPMSKGAKPDDVCN 226
Query: 163 YCKKSGHIKRNYFKYQEMLKKNGGKESDGASTSEK--SDQAGFAKELDENP--CDVLTVL 330
YCK+ GH K + K KK K+S A+ +E+ + + A DE+ DV +
Sbjct: 227 YCKEKGHWKFDCPK----KKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLD 282
Query: 331 SGKAKFLMLCCLTWGAYITCPRK 399
SG +Y CPR+
Sbjct: 283 SG------------ASYHICPRR 293
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 43.1 bits (100), Expect(3) = 9e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GTV+M +D C+V GIG +++KMFD
Sbjct: 523 WFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFD 557
Score = 37.7 bits (86), Expect(3) = 9e-08
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Frame = +1
Query: 1 ELEDVRQMLQNNKLMKKTE-SNEEASGLVA----KERRERSQSRGPK----RGSVASSG- 150
E+ D + + K M +E SN +A GL+ +E+ ++QSR RG S G
Sbjct: 380 EVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGR 439
Query: 151 -VTCFYCKKSGHIKRNYFKYQEMLKK------NGGKESDGAS---TSEKSD 273
+C YCK+ GH +K + K+ G KE +G + T EKSD
Sbjct: 440 YKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSD 490
Score = 20.8 bits (42), Expect(3) = 9e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +L+ CIYHM
Sbjct: 505 DQWILNTACIYHM 517
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 43.1 bits (100), Expect(3) = 1e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GTV+M +D C+V GIG +++KMFD
Sbjct: 316 WFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFD 350
Score = 37.7 bits (86), Expect(3) = 1e-07
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Frame = +1
Query: 1 ELEDVRQMLQNNKLMKKTE-SNEEASGLVA----KERRERSQSRGPK----RGSVASSG- 150
E+ D + + K M +E SN +A GL+ +E+ ++QSR RG S G
Sbjct: 173 EVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGR 232
Query: 151 -VTCFYCKKSGHIKRNYFKYQEMLKK------NGGKESDGAS---TSEKSD 273
+C YCK+ GH +K + K+ G KE +G + T EKSD
Sbjct: 233 YKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSD 283
Score = 20.8 bits (42), Expect(3) = 1e-07
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +L+ CIYHM
Sbjct: 298 DQWILNTACIYHM 310
>emb|CAN59934.1| hypothetical protein VITISV_001876 [Vitis vinifera]
Length = 1392
Score = 51.6 bits (122), Expect(2) = 1e-07
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +1
Query: 13 VRQMLQNNKLMKKTESNEEASGLVAKERRERSQSRGP------KRGSVASSGVTCFYCKK 174
V+ + N ++ +K++ + S ++ E+R RS+SRGP KR + + V C YC
Sbjct: 43 VKSCVLNEEMRRKSQGSSSQSNVLVTEKRGRSKSRGPKNRDRSKRKTNKFANVECHYCHL 102
Query: 175 SGHIKRNYFKYQEMLKKNGGKESDGASTSEKSDQAGFAKELDENPCDVLTV 327
GHIK+ Y + + +K+ KE +K+D G ++ D L V
Sbjct: 103 KGHIKKYYRQLKRDMKQEKVKE-------KKNDNGGEDDQVVTTTSDFLIV 146
Score = 30.8 bits (68), Expect(2) = 1e-07
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 392 QEKWFCKYRPYDGGTVMMRNDAACKVVGIGDI 487
++ +F Y D G+V M ND + K +G+GD+
Sbjct: 174 RKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDV 205
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 43.1 bits (100), Expect(3) = 2e-07
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M +D C+V G+ +++KMFD
Sbjct: 316 WFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFD 350
Score = 37.0 bits (84), Expect(3) = 2e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Frame = +1
Query: 37 KLMKKTESNEEASGLVAKERRE--------RSQSRGPKRGSVASSG--VTCFYCKKSGHI 186
K++ SN +A GLV + R++ R +S RG S G +C Y K+ GH
Sbjct: 186 KMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSCKYYKRDGHD 245
Query: 187 KRNYFKYQEMLKK------NGGKESDGAS---TSEKSD 273
+K Q+ K+ G KE +G + T EKSD
Sbjct: 246 ISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSD 283
Score = 20.8 bits (42), Expect(3) = 2e-07
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD C YHM
Sbjct: 298 DQWILDTACTYHM 310
>emb|CBG76256.1| OO_Ba0005L10-OO_Ba0081K17.7 [Oryza officinalis]
Length = 565
Score = 46.6 bits (109), Expect(3) = 2e-07
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M ++ CKVVGIG I++KMFD
Sbjct: 241 WFVTYEFVQGGTVLMGDNTLCKVVGIGTIQIKMFD 275
Score = 32.7 bits (73), Expect(3) = 2e-07
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 16/97 (16%)
Frame = +1
Query: 40 LMKKTESNEEASGLVAKERRERSQSRGPKRGSVASSG----------VTCFYCKKSGHIK 189
++ S+ +A GL + R++ ++ R +SS +C YCK H
Sbjct: 112 MVPSESSSSQAEGLAVRGRQQEKNTKNQSRDKSSSSYRRRSKSKGRYKSCKYCKGGRHDI 171
Query: 190 RNYFKYQ------EMLKKNGGKESDGASTSEKSDQAG 282
+K Q E K G KE +G + D++G
Sbjct: 172 SECWKLQNKDKRTESYKPKGNKEEEGKAVIVTDDKSG 208
Score = 21.6 bits (44), Expect(3) = 2e-07
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 318 LDGFVRESKVFDALLLDLGCIYHM 389
L +V ++ D +LD C YHM
Sbjct: 212 LVAYVGCAQTSDQWILDTACTYHM 235
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 40.4 bits (93), Expect(3) = 3e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 401 WFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKMFD 505
WF Y GGTV+M +D V GIG +++KMFD
Sbjct: 268 WFATYEAVQGGTVLMGDDTPFGVAGIGIVQIKMFD 302
Score = 38.9 bits (89), Expect(3) = 3e-07
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Frame = +1
Query: 19 QMLQNNKLMKKTESNEEASGLVAKERRE--------RSQSRGPKRGSVASSG--VTCFYC 168
+ ++ K++ SN +A GL+ + R++ R +S RG S G +C YC
Sbjct: 132 ESMEMKKMIPSEGSNSQAEGLIVRGRQQEKNRKNQSRDKSSSSYRGRSKSRGNYKSCKYC 191
Query: 169 KKSGHIKRNYFKYQEMLKK------NGGKESDGAS---TSEKSD 273
K+ G +K Q+ K+ G KE +G + T EKSD
Sbjct: 192 KRDGRDISECWKLQDKDKRTEKYISKGKKEEEGKAAVVTDEKSD 235
Score = 20.8 bits (42), Expect(3) = 3e-07
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 351 DALLLDLGCIYHM 389
D +LD C YHM
Sbjct: 250 DQWILDTACTYHM 262
>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
Length = 1362
Score = 44.3 bits (103), Expect(2) = 6e-07
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +1
Query: 13 VRQMLQNNKLMKKTESNEEASGLVAKERRERSQSRGPKRGSVASS------GVTCFYCKK 174
V+ + N ++ +K++ + S ++ + RS+SRGPK + S V C YC
Sbjct: 153 VKSCVLNEEMRRKSQGSSSQSNVLVIXKXGRSKSRGPKNRDRSKSKTNKFANVECHYCHL 212
Query: 175 SGHIKRNYFKYQEMLKKNGGKESDGASTSEKSDQAGFAKELDENPCDVLTV 327
GHIK KY LK++ G +K+D G ++ D L V
Sbjct: 213 KGHIK----KYCRQLKRD---MKQGKVKEKKNDNGGEDDQVATTISDFLIV 256
Score = 35.4 bits (80), Expect(2) = 6e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 392 QEKWFCKYRPYDGGTVMMRNDAACKVVGIGDIRMK 496
Q+ +F Y D G+V M ND + K +G+GD+R++
Sbjct: 284 QKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLE 318
>emb|CAN75724.1| hypothetical protein VITISV_040386 [Vitis vinifera]
Length = 885
Score = 44.7 bits (104), Expect(2) = 8e-07
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Frame = +1
Query: 13 VRQMLQNNKLMKKTESNEEASGLVAKERRERSQSRGPKRGSVASS------GVTCFYCKK 174
V+ + N ++ +K++ + S ++ E+R RS+S GPK + S V C YC
Sbjct: 142 VKSCILNEEMRRKSQGSSSQSNVLITEKRGRSKSIGPKNRDRSKSKTNKFANVECHYCHL 201
Query: 175 SGHIKRNYFKYQEMLKKN--GGKESDGASTSEKSDQAGFAKE 294
GHI+ KY LKK+ KE+ S S A + K+
Sbjct: 202 KGHIR----KYCRQLKKDMKQRKETSWVIDSGASIHATYRKD 239
Score = 34.7 bits (78), Expect(2) = 8e-07
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 374 VHISHAQEKWFCKYRPYDGGTVMMRNDAACKVVGIGDIRMK 496
+H ++ ++ +F Y D G+V M ND + K +G+GD+R++
Sbjct: 232 IHATYRKD-FFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLE 271
>emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]
Length = 1317
Score = 48.1 bits (113), Expect(2) = 1e-06
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Frame = +1
Query: 13 VRQMLQNNKLMKKTESNEEASGLVAKERRERSQSRGPKRGSVASS------GVTCFYCKK 174
V+ + N ++ +K++ + S ++ E++ +S+SRGPK + S V C YC
Sbjct: 153 VKSCVLNEEMRRKSQGSSSQSNVLVTEKKGKSKSRGPKNRDRSKSKTNKFANVECHYCHL 212
Query: 175 SGHIKRNYFKYQEMLKKNGGKESDGASTSEKSDQAGFAKELDENPCDVLTV 327
GHIK KY LK++ G +K+D G ++ D L V
Sbjct: 213 KGHIK----KYCRQLKRD---MKQGKVKEKKNDNGGEDDQVATTTSDFLIV 256
Score = 30.4 bits (67), Expect(2) = 1e-06
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 392 QEKWFCKYRPYDGGTVMMRNDAACKVVGIGDIRMKM 499
++ +F Y D G+V M ND + K +G+GD + M
Sbjct: 284 RKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDESLMM 319