BLASTX nr result
ID: Anemarrhena21_contig00016854
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00016854
(1439 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polyme... 503 e-139
ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polyme... 497 e-138
ref|XP_009381445.1| PREDICTED: probable RNA-dependent RNA polyme... 460 e-126
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare] 457 e-125
gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indi... 455 e-125
ref|XP_010236147.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 453 e-124
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su... 452 e-124
gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops... 452 e-124
gb|EMS66194.1| RNA-dependent RNA polymerase 1 [Triticum urartu] 447 e-123
ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [S... 445 e-122
ref|XP_008644240.1| PREDICTED: putative RNA-dependent RNA polyme... 442 e-121
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 442 e-121
gb|ACH53360.1| RNA-directed RNA polymerase 1a, partial [Hordeum ... 440 e-120
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme... 440 e-120
gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare su... 440 e-120
ref|XP_010917517.1| PREDICTED: probable RNA-dependent RNA polyme... 438 e-120
ref|XP_006647856.1| PREDICTED: probable RNA-dependent RNA polyme... 436 e-119
ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 429 e-117
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 427 e-117
ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 426 e-116
>ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1 [Elaeis
guineensis] gi|743774329|ref|XP_010917516.1| PREDICTED:
probable RNA-dependent RNA polymerase 1 isoform X1
[Elaeis guineensis]
Length = 1129
Score = 503 bits (1296), Expect = e-139
Identities = 252/423 (59%), Positives = 314/423 (74%), Gaps = 1/423 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MG KT ++GFP + TA VK FLE +TG+ ++FA+K R PK + +SRAYA+VQF T++
Sbjct: 1 MGSKTTNIHGFPTTATAPSVKAFLEVHTGEGTIFALKFRLPKYVTAKSRAYAIVQFTTNR 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
AE I A K Y+ LKVR VERDI P PR LF+L++ LH G +S+ VL
Sbjct: 61 HAESI---AHKHLVWYDGFVLKVRDVERDIVPKPRTSLFILENATLHFGSPVSQNKFSVL 117
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
WS VKV+FGFN++KIYFFL++G SYK EL+YESIW++QLH QH +FL+IQV AA
Sbjct: 118 WSAMDVKVNFGFNLRKIYFFLSRGGHSYKFELAYESIWEIQLHRSSTQHLQFLLIQVVAA 177
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P+IYE+ N L+ EDPI NYFK+ DDQW+RTTDF+P CSIGQS ALCL+L Y CDLP
Sbjct: 178 PKIYELFPRNSGLLLEDPIYNYFKDPPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLP 237
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ RDYF +YKE GH L+ SYS SLDLVPIVEPR IEVPYKILFK+NH+VQNGTL
Sbjct: 238 NIRDYFVFYKESEGHFDLERGISYSCSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLF 297
Query: 366 GPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPPSP 187
GPTL + FF VSP I YIE A+ +M K+S FNPA WL ++Y ++ +S P SP
Sbjct: 298 GPTLDEKFFRLVSPQYVRIDYIECAIEEMYFSKSSFFNPANWLTEKYSKFKRSTRLPKSP 357
Query: 186 AIA-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIFS 10
+I+ D GLVYV+RVQ+TPSKVYFYGPE+NVSNRV+R++SEDI+NF+RVSFV+ED K+ S
Sbjct: 358 SISLDSGLVYVYRVQVTPSKVYFYGPEVNVSNRVLRHFSEDIENFIRVSFVDEDWEKMHS 417
Query: 9 TDL 1
TDL
Sbjct: 418 TDL 420
>ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Phoenix
dactylifera] gi|672186025|ref|XP_008812978.1| PREDICTED:
probable RNA-dependent RNA polymerase 1 [Phoenix
dactylifera]
Length = 1131
Score = 497 bits (1280), Expect = e-138
Identities = 248/423 (58%), Positives = 316/423 (74%), Gaps = 1/423 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MG KT+ ++GFP + TA VK FLE +TG +++A+K R PK + +SRAYA+VQF+ +K
Sbjct: 1 MGSKTINIHGFPTTATAPSVKEFLEVHTGKGTIYALKFRLPKYVTAKSRAYAIVQFIANK 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
AE I A K+ + LKVR++ERDI P PR LFVL++T +H G +S+ VL
Sbjct: 61 HAESI---ACKRLVWVDGFVLKVRHMERDIVPKPRTSLFVLENTTVHFGSPVSQNKFSVL 117
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
WS V+V+FGF+M+KIYFFL QG+ SYK EL+YESIW++QLH ++ +FL+IQV AA
Sbjct: 118 WSPKDVRVNFGFSMRKIYFFLVQGSHSYKFELAYESIWEIQLHHSSTKYLQFLLIQVVAA 177
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P++YE+ + N L+HEDP NYFK++ DDQW+RTTDF+P CSIGQS ALCL+L Y CDLP
Sbjct: 178 PKVYELSLRNSGLLHEDPEYNYFKDLPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLP 237
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ RDYF +YKE G L+ SYSRSLDLVPIVEPR IEVPYKILFK+NH+VQNGTL
Sbjct: 238 NIRDYFPFYKEFEGRFDLERGSSYSRSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLF 297
Query: 366 GPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPPSP 187
GPTL FF VSP I YIE A+ +M K+S F+PA WL +YL+ +S P SP
Sbjct: 298 GPTLDGKFFGLVSPQFIRIDYIECAIEEMYHSKSSFFDPANWLTKKYLKLKRSLRLPKSP 357
Query: 186 AIA-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIFS 10
+I+ D GLVYV+RVQ+TPSKVYFYGPE+NVSNRV+R++SEDI+NFVRVSFV+ED K+ S
Sbjct: 358 SISLDAGLVYVYRVQVTPSKVYFYGPEVNVSNRVVRHFSEDIENFVRVSFVDEDWEKMHS 417
Query: 9 TDL 1
TDL
Sbjct: 418 TDL 420
>ref|XP_009381445.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Musa acuminata
subsp. malaccensis]
Length = 1134
Score = 460 bits (1184), Expect = e-126
Identities = 237/426 (55%), Positives = 303/426 (71%), Gaps = 4/426 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
M KT+Q+ FP TA++V FLEKYTG+ SV A+K+R K S YA+VQF +
Sbjct: 1 MTSKTIQISRFPSYATAKQVTVFLEKYTGEGSVIALKLRP----SKNSTVYAIVQFPRRE 56
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
D + ++ Q+ SY+ YL VR +ERDI P PRK LFVL++ LH GC +S++ L VL
Sbjct: 57 DVQDLFVMIQQGKLSYDGHYLTVRNMERDIIPKPRKPLFVLENVTLHFGCPLSQKRLSVL 116
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
S VKV+FGF M+KIYF L+ G SYKLEL+YESIW+++LH Q+S+FLV+QV AA
Sbjct: 117 RSMEDVKVNFGFEMRKIYFLLSHGIHSYKLELAYESIWEIRLHRSSVQNSQFLVVQVVAA 176
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P+IYE N ++EDP LNYF+++ DDQW+RTTDFT + SIGQS ALCL+LP+ C LP
Sbjct: 177 PKIYETPSRNTGSLYEDPRLNYFRDLPDDQWVRTTDFTSSRSIGQSCALCLQLPFECSLP 236
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ R+YF ++ EV GH L+ SYSR+LDLVPIVEP GI+V YKILFK+NH+VQNGTL+
Sbjct: 237 NIREYFVHFIEVDGHYDLERGYSYSRNLDLVPIVEPHTGIQVSYKILFKINHMVQNGTLI 296
Query: 366 GPTLTDDFFHFVSP-HKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPPS 190
GPTL F+ V P P YIE AL M+ S F PA+WL +QY ++ KSN S
Sbjct: 297 GPTLDRKFYTLVCPCPSIPTEYIERALEMMSVLDNSCFAPAEWLLEQYKKFKKSNRHINS 356
Query: 189 PAI---ADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGK 19
P I +D LVYVHRVQ+TPSKVYFYGPEINVSNRV+R Y ++IDNF+R+SFV+ED K
Sbjct: 357 PGISLDSDSSLVYVHRVQVTPSKVYFYGPEINVSNRVLRQYRQEIDNFLRISFVDEDREK 416
Query: 18 IFSTDL 1
+ STD+
Sbjct: 417 MHSTDI 422
>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 457 bits (1175), Expect = e-125
Identities = 229/423 (54%), Positives = 296/423 (69%), Gaps = 1/423 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MGGKT+QV GFP +V A VK+ LE+ G +VFAVK+R PK I SR++A+VQF +
Sbjct: 1 MGGKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEA 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N AQ+ + YLK RY ERDI P PR +F L+ LH GCL+ E L VL
Sbjct: 61 HASLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
WS T V V+FGF MK+I F L ++ YKLELSYESIW++QLH P KFL+IQVQAA
Sbjct: 121 WSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAA 180
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P+IYE + +++DP+ NYF++ DDQW RTTDFTP+ SIGQS LCLELP+ C LP
Sbjct: 181 PKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLP 240
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ R+YF YY+ +L+ SYS + VP+V+ + +VPY+ILFK+NHLVQNGTL
Sbjct: 241 NIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLS 300
Query: 366 GPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNI-QPPS 190
GPTL D+F+ VSP I I+ AL KM+ K + NP WL++QY + +S + P+
Sbjct: 301 GPTLDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPN 360
Query: 189 PAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIFS 10
+ DDGLVYV+RVQITP+KVYFYGPEINVSNRV+RNY+ D+DNF+R+SFV+EDC K+ S
Sbjct: 361 ITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRS 420
Query: 9 TDL 1
TDL
Sbjct: 421 TDL 423
>gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 455 bits (1170), Expect = e-125
Identities = 234/426 (54%), Positives = 296/426 (69%), Gaps = 4/426 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MG KT+QV GF L +A VK+ LE+ G +V+AVK+RHPK + SRAYA+VQF T +
Sbjct: 1 MGVKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEE 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N AQ++ YLKV +RDI P PR +F L+D LH GCL+ E L L
Sbjct: 61 HASLVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGCLLKETILSAL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQS--YKLELSYESIWDVQLHCPHAQHSKFLVIQVQ 733
WS TGV V+FGFN+KKIYF+L S YKLELSYESIW++QL P +KFL+IQVQ
Sbjct: 121 WSRTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQRPPKSQTKFLLIQVQ 180
Query: 732 AAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCD 553
AAP+IYE +++EDP+ NYF++ DDQW RTTDFT + SIGQS LCLE+P CD
Sbjct: 181 AAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRCD 240
Query: 552 LPDFRDYFFYYKEVVGHVSLKNTD-SYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNG 376
LP+ RDYFFYY E ++ YS VPIV+ R VPY+ILFK+NHLVQNG
Sbjct: 241 LPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSRG--YVPYEILFKINHLVQNG 298
Query: 375 TLMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQP 196
TL GPT+ D FF VSP PI +I+ AL M+ K + NP WL++QY ++ +S
Sbjct: 299 TLSGPTVDDSFFRLVSPAFVPIDHIKRALEMMSYLKKTCLNPTSWLSEQYSKFRRSRYVQ 358
Query: 195 PSPAIA-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGK 19
PSP I+ DDGLVYV+RVQ+TP+KVYFYGPEINVSNRV+RN+S DI+NF+R+SFV+EDC K
Sbjct: 359 PSPNISLDDGLVYVYRVQVTPAKVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEK 418
Query: 18 IFSTDL 1
+ +TDL
Sbjct: 419 LRATDL 424
>ref|XP_010236147.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
1 [Brachypodium distachyon]
Length = 1117
Score = 453 bits (1165), Expect = e-124
Identities = 233/425 (54%), Positives = 295/425 (69%), Gaps = 3/425 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MGGKT+Q+ GFP +V A VK+ LE+ G +V+AVK+R PK I SR++A+VQF T +
Sbjct: 1 MGGKTLQISGFPANVHADHVKDLLEQIVGAGNVYAVKLRPPKNITANSRSFAIVQFQTEE 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N A + S E YLKVR ERDI P PR +F L L CL+ E L VL
Sbjct: 61 YASLVENAAXRNVLSTESYYLKVRPAERDIVPRPRTAMFTLHGATLRFSCLLKENVLSVL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHS--KFLVIQVQ 733
WS T V V+FGF+MKKIYF+L + YKLELSYESIW++QLH P A S KFL+IQV+
Sbjct: 121 WSGTDVSVEFGFDMKKIYFYLE--CRKYKLELSYESIWEIQLHRPPAYRSQKKFLLIQVE 178
Query: 732 AAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCD 553
AAP+IYE+ + EDP+ NYF++ DDQW RTTDFTP+ SIGQS LCLELPY+ D
Sbjct: 179 AAPKIYELNQRRAGFMFEDPLFNYFRDDTDDQWTRTTDFTPSASIGQSFILCLELPYHHD 238
Query: 552 LPDFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGT 373
LP RDYF YY+E ++ SYS VP V+ H I+VPY+ILFK+NHLVQNGT
Sbjct: 239 LPKIRDYFVYYEEHNDDFHCRSGHSYSCDTRFVPNVKSHHFIDVPYEILFKINHLVQNGT 298
Query: 372 LMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPP 193
L GPTL D+FF VSP I +I+ AL K++ K + NP WL++QY +S
Sbjct: 299 LSGPTLDDNFFRMVSPGFVSIDHIKRALEKLSYQKKTCLNPTNWLSEQYAIIKRSRYVLA 358
Query: 192 SPAIA-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKI 16
SP I+ DDGLVYV+R Q+TP+KVYFYGPEINVSNRV+R+Y+ D++NF+R+SFV+EDC K+
Sbjct: 359 SPNISLDDGLVYVYRAQVTPAKVYFYGPEINVSNRVVRHYAADLENFLRISFVDEDCEKL 418
Query: 15 FSTDL 1
STDL
Sbjct: 419 RSTDL 423
>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 452 bits (1164), Expect = e-124
Identities = 228/423 (53%), Positives = 295/423 (69%), Gaps = 1/423 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MGGKT+QV GFP +V A VK+ LE+ G +VFAVK+R PK I SR++A+VQF +
Sbjct: 1 MGGKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEA 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N AQ+ + YLK RY ERDI P PR +F L+ LH GCL+ E L VL
Sbjct: 61 HASLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSVL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
WS T V V+FGF MK+I F L ++ YKLELSYESIW++QLH P KFL+IQVQAA
Sbjct: 121 WSGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAA 180
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P+IYE + +++DP+ NYF++ DDQW RTTDFTP+ SIGQS L LELP+ C LP
Sbjct: 181 PKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYLP 240
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ R+YF YY+ +L+ SYS + VP+V+ + +VPY+ILFK+NHLVQNGTL
Sbjct: 241 NIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLS 300
Query: 366 GPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNI-QPPS 190
GPTL D+F+ VSP I I+ AL KM+ K + NP WL++QY + +S + P+
Sbjct: 301 GPTLDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPN 360
Query: 189 PAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIFS 10
+ DDGLVYV+RVQITP+KVYFYGPEINVSNRV+RNY+ D+DNF+R+SFV+EDC K+ S
Sbjct: 361 ITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRS 420
Query: 9 TDL 1
TDL
Sbjct: 421 TDL 423
>gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops tauschii]
Length = 1144
Score = 452 bits (1163), Expect = e-124
Identities = 228/440 (51%), Positives = 302/440 (68%), Gaps = 18/440 (4%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MGGKT+QV GFP +V A VK+ LE+ G +VFA+K+R PK I S+++A+VQF +
Sbjct: 1 MGGKTIQVSGFPSTVNADHVKDLLEQIVGTGNVFAIKLRPPKNISANSKSFAIVQFQSEA 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N A++ + ++LK RY ERDI P PR +F L+D LH GCL+ E+AL VL
Sbjct: 61 HASLVLNAARRNALRSGSNHLKARYAERDIVPRPRTTIFNLQDATLHFGCLLREKALSVL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQ---- 739
WS T V V+FGF MK+I F L ++ YKLELSYESIW++QLH P KFL+IQ
Sbjct: 121 WSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQLRDF 180
Query: 738 ------------VQAAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIG 595
VQAAP+IYE + +++DP+ NYF++ DDQW RTTDFTP+ SIG
Sbjct: 181 DNLSWRNVSVSQVQAAPKIYEQNIRRSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIG 240
Query: 594 QSVALCLELPYYCDLPDFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPY 415
QS LCLELP+ C LP+ R+YF YY+ L+ SYS + VP+V+ H +VPY
Sbjct: 241 QSYILCLELPHICYLPNIREYFVYYEVHDDVFHLQRGHSYSSNTCFVPVVKSHHFTDVPY 300
Query: 414 KILFKVNHLVQNGTLMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLN 235
+ILFK+NHLVQNGTL GPTL D+F+ VSP I +I+ AL KM+ K + NP KWL+
Sbjct: 301 EILFKINHLVQNGTLSGPTLDDNFYRLVSPGYECIDHIKRALEKMSYLKKTCLNPTKWLS 360
Query: 234 DQYLEYGKSN--IQPPSPAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDID 61
+QY + +S ++ P+ + DDGLVYV+RVQITP+KVYFYGPEINVSNRV+R+Y+ D+D
Sbjct: 361 EQYKKKRRSRYMLKLPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRHYAADLD 420
Query: 60 NFVRVSFVEEDCGKIFSTDL 1
NF+R+SFV+EDC K+ STDL
Sbjct: 421 NFLRISFVDEDCEKLRSTDL 440
>gb|EMS66194.1| RNA-dependent RNA polymerase 1 [Triticum urartu]
Length = 1252
Score = 447 bits (1151), Expect = e-123
Identities = 229/447 (51%), Positives = 298/447 (66%), Gaps = 25/447 (5%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MGGKT+QV GFP +V A VK+ LEK G +VFA+K+R PK I S+++A+VQF +
Sbjct: 1 MGGKTIQVSGFPSTVNADHVKDLLEKIVGTGNVFAIKLRPPKNISANSKSFAIVQFQSEA 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N A++ + ++LK RY ERDI P PR +F L+D LH GCL+ E+ L VL
Sbjct: 61 HASLVLNAARRNALRSGSNHLKARYAERDIVPRPRTTIFNLQDATLHFGCLLREKVLSVL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQ---- 739
WS T V V+FGF MK+I F L ++ YKLELSYESIW++QLH P KFL+IQ
Sbjct: 121 WSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQLFLF 180
Query: 738 -------------------VQAAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDF 616
VQAAP+IYE + +++DP+ NY ++ DDQW RTTDF
Sbjct: 181 IESSEIFVNLSWRNVSVSQVQAAPKIYEQNIRRSGSMYDDPLFNYSRDDTDDQWTRTTDF 240
Query: 615 TPACSIGQSVALCLELPYYCDLPDFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPR 436
TP+ SIGQS LCLELP+ C LP+ R+YF YY+ L+ SYS + VP+V+
Sbjct: 241 TPSASIGQSYILCLELPHICYLPNIREYFVYYEVHDDVFHLQRGHSYSSNTCFVPVVKSH 300
Query: 435 HGIEVPYKILFKVNHLVQNGTLMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNF 256
H +VPY+ILFK+NHLVQNGTL GPTL D+F+ VSP I +I+ AL KM+ K +
Sbjct: 301 HFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYECIDHIKRALEKMSYLKKTCL 360
Query: 255 NPAKWLNDQYLEYGKSNIQPPSPAIA--DDGLVYVHRVQITPSKVYFYGPEINVSNRVIR 82
NP KWL++QY + +S SP I DDGLVYV+RVQITP+KVYFYGPEINVSNRV+R
Sbjct: 361 NPTKWLSEQYKKNRRSRYMLKSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVR 420
Query: 81 NYSEDIDNFVRVSFVEEDCGKIFSTDL 1
+Y+ D+DNF+R+SFV+EDC K+ STDL
Sbjct: 421 HYAADLDNFLRISFVDEDCEKLRSTDL 447
>ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein
SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 445 bits (1145), Expect = e-122
Identities = 230/426 (53%), Positives = 297/426 (69%), Gaps = 4/426 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
M G+T+QV+GF L+ +A+ VK FLE+ +G +++A+K+RHP+ I SRA+A+VQF + +
Sbjct: 1 MVGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQE 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ + Q+ + R YLK R +RDI P PR +F L+DTVLHLGCL+ E L L
Sbjct: 61 SASLVEDVVQRNAPRIGRFYLKTRPADRDIVPRPRIPMFSLEDTVLHLGCLVKENILSAL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHS--KFLVIQVQ 733
++ + V V FGF+MKKIYF+L+ YKLELSYESIW++QLH P A S KFL+IQVQ
Sbjct: 121 FTASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWEIQLHRPPAYRSRTKFLLIQVQ 180
Query: 732 AAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCD 553
AAP+IYE++ L++EDP N+F + D+QW RT DFTP+ SIGQS CLE+P C+
Sbjct: 181 AAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVPQQCE 240
Query: 552 LPDFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGT 373
LP DYF YYKE +N SYS LVPIV+ IEVPY+ILFK+NHLVQNGT
Sbjct: 241 LPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDYIEVPYEILFKINHLVQNGT 300
Query: 372 LMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSN--IQ 199
L GPT+ FF VSP PI +I+ AL KM+ K++ NP WL+ QY +S Q
Sbjct: 301 LSGPTVDHSFFCHVSPEFEPIDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRRSRHASQ 360
Query: 198 PPSPAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGK 19
S DDGLVYVHRVQ+TP+KVYFYGPEINVSNRV+RN+S DIDNF+R+SFV+EDC K
Sbjct: 361 RSSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRNFSADIDNFLRISFVDEDCEK 420
Query: 18 IFSTDL 1
+ S DL
Sbjct: 421 LRSLDL 426
>ref|XP_008644240.1| PREDICTED: putative RNA-dependent RNA polymerase isoform X1 [Zea
mays] gi|670405152|ref|XP_008644241.1| PREDICTED:
putative RNA-dependent RNA polymerase isoform X1 [Zea
mays] gi|670405154|ref|XP_008644242.1| PREDICTED:
putative RNA-dependent RNA polymerase isoform X1 [Zea
mays]
Length = 1108
Score = 442 bits (1137), Expect = e-121
Identities = 229/426 (53%), Positives = 294/426 (69%), Gaps = 4/426 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
M G+T+QV GF L+ +A+ VK FLE+ G ++ A+K+RHP+ I SRA+A+VQF + +
Sbjct: 1 MVGRTIQVQGFALTDSAESVKLFLERIAGAGTICALKLRHPRNISANSRAFAIVQFQSQE 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N AQ+Q R YL+ R +RDI P PR +F L+D VLHLGCL+ E L L
Sbjct: 61 SASLVENAAQRQVLKIGRFYLRTRPADRDIVPRPRIPMFSLEDIVLHLGCLVKENILSAL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSK--FLVIQVQ 733
+ + V V FGF+MKKIYF+L+ +KLELSYESIW++QLH P A S+ FL+IQVQ
Sbjct: 121 FRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQVQ 180
Query: 732 AAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCD 553
AAP+IY+++ L+ EDP N+F++ D+QW RT DFTP+ SIGQS LCLE+P C+
Sbjct: 181 AAPKIYKLLPGRPGLMFEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQQCE 240
Query: 552 LPDFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGT 373
LP DYF YYKE +N SYS +LVPIV+ IEVPY+ILFK+NHLVQNGT
Sbjct: 241 LPRIGDYFVYYKEQNLDFECRNGYSYSCGSNLVPIVKSPDYIEVPYEILFKINHLVQNGT 300
Query: 372 LMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSN--IQ 199
L GPT+ FF VSP PI +I+ AL KM K++ NP WL+ QY KS Q
Sbjct: 301 LSGPTVDHSFFRHVSPKFEPIDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHASQ 360
Query: 198 PPSPAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGK 19
S DDGLVYVHRVQ+TP+KVYFYGPEINVSNRV+R++S DIDNF+R+SFV+EDC K
Sbjct: 361 KLSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEK 420
Query: 18 IFSTDL 1
+ S DL
Sbjct: 421 LRSADL 426
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 442 bits (1137), Expect = e-121
Identities = 222/425 (52%), Positives = 298/425 (70%), Gaps = 5/425 (1%)
Frame = -3
Query: 1260 GKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKV-IGKRSRAYAVVQFLTSKD 1084
GKT+QV+GFP VTA+ VK+FLE TG +V+A+K+R PK +G R YA+VQF T +
Sbjct: 2 GKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVG---RLYAIVQFTTKEA 58
Query: 1083 AEIIYNEA-QKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A+ I + A + + Y RSYL R +E+D P PR + ++ LH GC IS E VL
Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
W V V+FGF M+KI F L+ + Y+LEL YE+IW+++LHCP Q +K+L+IQ+ A
Sbjct: 119 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
PRI++ + + L++E P+ N+FKE+ DDQW+RTTDFTP+ IGQS LC+ELPY +LP
Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
DF++ F YYKE L+ +YSRSLDLVPIV P GI +PY+ILFK+N LVQNG +
Sbjct: 239 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298
Query: 366 GPTLTDDFFHFVSPHKFP--ITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPP 193
GP L +F+ V P++ P I+ IE+AL K+ K + P++WL DQY +Y S +P
Sbjct: 299 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358
Query: 192 SPAIA-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKI 16
SPAI+ DDGLVYVHRVQ+TPS+VYF GPEINVSNRV+R++ DIDNF+R+SF++ED KI
Sbjct: 359 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 418
Query: 15 FSTDL 1
STDL
Sbjct: 419 HSTDL 423
>gb|ACH53360.1| RNA-directed RNA polymerase 1a, partial [Hordeum vulgare]
Length = 1114
Score = 440 bits (1131), Expect = e-120
Identities = 225/424 (53%), Positives = 290/424 (68%), Gaps = 2/424 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MGGKT+QV GFP +V VK+ LE+ G V AVK+R PK I SR++A+VQF T
Sbjct: 1 MGGKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEA 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N A+ + +YLKVR ERDI PR LF L+D LH GCL+ E L VL
Sbjct: 61 HASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
WS TGV V+FGF MKKI F LT + YKLELSYESIW++QL+ P KFL+IQV AA
Sbjct: 121 WSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAA 180
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P+IYE + + +++DP+ NYF++ DDQW RTTDFTP SIGQS LCLELP C LP
Sbjct: 181 PKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLP 240
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ R+YF YYK SYS + VPIV+ ++ +VPY+ILFK+N+LVQNG L
Sbjct: 241 NIREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILS 300
Query: 366 GPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQY--LEYGKSNIQPP 193
GPTL D+F+ VSP I +I++AL M+ K + NP WL+++Y ++ + + P
Sbjct: 301 GPTLDDNFYRLVSPGYVCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSP 360
Query: 192 SPAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIF 13
+ A+ DDGL YV+RVQITP+KVYFYGPEINVSNRV+RNYS D++NF+R+SFV+EDC K+
Sbjct: 361 NIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLR 420
Query: 12 STDL 1
STDL
Sbjct: 421 STDL 424
>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Setaria italica]
Length = 1123
Score = 440 bits (1131), Expect = e-120
Identities = 226/424 (53%), Positives = 293/424 (69%), Gaps = 4/424 (0%)
Frame = -3
Query: 1260 GKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSKDA 1081
G+T+QV GF L+ +A+ VK+FLE+ G +V+A+K+RHP+ I S+A+A+VQF T + A
Sbjct: 2 GRTIQVSGFALTDSAEYVKDFLERIAGAGTVYALKLRHPRNITATSKAFAIVQFQTQECA 61
Query: 1080 EIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVLWS 901
++ N AQ+ + YLK R +RDI P PR +F L LHLGCL+ E L L+S
Sbjct: 62 SLVENAAQRNALRSRCIYLKARPADRDIVPRPRIAMFSLDAAALHLGCLVKENILYTLFS 121
Query: 900 FTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHA--QHSKFLVIQVQAA 727
+ V FGF+MKKIYF+L+ YKLELSYESIW++QLH P A +KFL+ QVQAA
Sbjct: 122 VRNISVQFGFDMKKIYFYLSYNLIKYKLELSYESIWEMQLHRPPAYLSQTKFLLFQVQAA 181
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P+IYE++ L++EDP N+F++ D+QW RT DFTP+ SIGQS LCLE+P C+LP
Sbjct: 182 PKIYELLPRRSGLMYEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQQCELP 241
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ DYF YYKE + SYS VPIV+ IEVPY+ILFK+NHLVQNGTL
Sbjct: 242 NIADYFVYYKEHNLDFECQKGYSYSCGNSFVPIVKSPDYIEVPYEILFKINHLVQNGTLS 301
Query: 366 GPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSN--IQPP 193
GPTL D+FF VSP PI +I+ AL KM+ K++ NP WL QY + KS +Q
Sbjct: 302 GPTLDDNFFCLVSPKHVPIDHIKRALLKMSYLKSTCLNPTNWLALQYSKIRKSRYALQRS 361
Query: 192 SPAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIF 13
S DDGLVYVHRVQ+TP+KVYFYGPEINVSNRV+R++S D+DNF+R+SFV+EDC K+
Sbjct: 362 SGISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADLDNFLRISFVDEDCEKLR 421
Query: 12 STDL 1
S DL
Sbjct: 422 SVDL 425
>gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 440 bits (1131), Expect = e-120
Identities = 225/424 (53%), Positives = 290/424 (68%), Gaps = 2/424 (0%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
MGGKT+QV GFP +V VK+ LE+ G V AVK+R PK I SR++A+VQF T
Sbjct: 1 MGGKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEA 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
A ++ N A+ + +YLKVR ERDI PR LF L+D LH GCL+ E L VL
Sbjct: 61 HASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVL 120
Query: 906 WSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAA 727
WS TGV V+FGF MKKI F LT + YKLELSYESIW++QL+ P KFL+IQV AA
Sbjct: 121 WSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAA 180
Query: 726 PRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLP 547
P+IYE + + +++DP+ NYF++ DDQW RTTDFTP SIGQS LCLELP C LP
Sbjct: 181 PKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLP 240
Query: 546 DFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLM 367
+ R+YF YYK SYS + VPIV+ ++ +VPY+ILFK+N+LVQNG L
Sbjct: 241 NIREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILS 300
Query: 366 GPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQY--LEYGKSNIQPP 193
GPTL D+F+ VSP I +I++AL M+ K + NP WL+++Y ++ + + P
Sbjct: 301 GPTLDDNFYSLVSPGYVCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSP 360
Query: 192 SPAIADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIF 13
+ A+ DDGL YV+RVQITP+KVYFYGPEINVSNRV+RNYS D++NF+R+SFV+EDC K+
Sbjct: 361 NIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLR 420
Query: 12 STDL 1
STDL
Sbjct: 421 STDL 424
>ref|XP_010917517.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2 [Elaeis
guineensis] gi|743774333|ref|XP_010917518.1| PREDICTED:
probable RNA-dependent RNA polymerase 1 isoform X2
[Elaeis guineensis]
Length = 1075
Score = 438 bits (1127), Expect = e-120
Identities = 214/346 (61%), Positives = 266/346 (76%), Gaps = 1/346 (0%)
Frame = -3
Query: 1035 RSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVLWSFTGVKVDFGFNMKKI 856
+++L+VR VERDI P PR LF+L++ LH G +S+ VLWS VKV+FGFN++KI
Sbjct: 21 KAFLEVRDVERDIVPKPRTSLFILENATLHFGSPVSQNKFSVLWSAMDVKVNFGFNLRKI 80
Query: 855 YFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAAPRIYEMVVPNLFLIHED 676
YFFL++G SYK EL+YESIW++QLH QH +FL+IQV AAP+IYE+ N L+ ED
Sbjct: 81 YFFLSRGGHSYKFELAYESIWEIQLHRSSTQHLQFLLIQVVAAPKIYELFPRNSGLLLED 140
Query: 675 PILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLPDFRDYFFYYKEVVGHVS 496
PI NYFK+ DDQW+RTTDF+P CSIGQS ALCL+L Y CDLP+ RDYF +YKE GH
Sbjct: 141 PIYNYFKDPPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLPNIRDYFVFYKESEGHFD 200
Query: 495 LKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLMGPTLTDDFFHFVSPHKF 316
L+ SYS SLDLVPIVEPR IEVPYKILFK+NH+VQNGTL GPTL + FF VSP
Sbjct: 201 LERGISYSCSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLFGPTLDEKFFRLVSPQYV 260
Query: 315 PITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPPSPAIA-DDGLVYVHRVQIT 139
I YIE A+ +M K+S FNPA WL ++Y ++ +S P SP+I+ D GLVYV+RVQ+T
Sbjct: 261 RIDYIECAIEEMYFSKSSFFNPANWLTEKYSKFKRSTRLPKSPSISLDSGLVYVYRVQVT 320
Query: 138 PSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIFSTDL 1
PSKVYFYGPE+NVSNRV+R++SEDI+NF+RVSFV+ED K+ STDL
Sbjct: 321 PSKVYFYGPEVNVSNRVLRHFSEDIENFIRVSFVDEDWEKMHSTDL 366
>ref|XP_006647856.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Oryza
brachyantha]
Length = 1113
Score = 436 bits (1120), Expect = e-119
Identities = 226/427 (52%), Positives = 293/427 (68%), Gaps = 5/427 (1%)
Frame = -3
Query: 1266 MGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSK 1087
M GKT+QV GF L TA+ VK+ LE+ G +V+A+K+RHPK I SRA+A+VQF + +
Sbjct: 1 MVGKTLQVSGFSLHDTAEYVKDLLERIVGSGNVYALKLRHPKNITATSRAFAIVQFQSEE 60
Query: 1086 DAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVL 907
++ AQ+ R YLKV +RDI P PR +F L+D LH+GCL+ E L L
Sbjct: 61 HGSLVKIAAQRNILRSGRYYLKVHPSDRDIVPRPRVSMFKLEDATLHIGCLLRERVLSAL 120
Query: 906 WSFTGVKVDFGFNMKKIYFF--LTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQ 733
WS T V V+FGFN+KKIYF L G+ +KLELSYESIW+++LH P +KFL+IQV+
Sbjct: 121 WSRTKVSVEFGFNLKKIYFHLQLPSGSTEFKLELSYESIWEIELHRPPRSQTKFLLIQVE 180
Query: 732 AAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCD 553
AAP+IYE ++ EDP NYF++ DDQW RTTDFT + IGQS LCLE+P D
Sbjct: 181 AAPKIYEPTPRRSGVMFEDPSFNYFRDSTDDQWTRTTDFTASSCIGQSYILCLEVPCCRD 240
Query: 552 LPDFRDYFFYYKEVVGHVSL-KNTDSYSRSLDLVPIVE-PRHGIEVPYKILFKVNHLVQN 379
LP+FR+YFFYYKE + YS VPIV+ P + VPY+ILFK+NHLVQN
Sbjct: 241 LPNFREYFFYYKEYNHDFECQRGGHPYSNDTRFVPIVKSPGY---VPYEILFKINHLVQN 297
Query: 378 GTLMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQ 199
G+L GPT+ FF V+P FPI +I+ AL M+ K + NP WL++QY + +S
Sbjct: 298 GSLSGPTVDGSFFRMVNPAFFPIDHIKRALEMMSYLKKTCLNPTSWLSEQYSKLRRSRYV 357
Query: 198 PPSPAI-ADDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCG 22
SP+I DDGLVYV+RVQ+TP+KVYFYGPEINVSNRV+RN+S DI+NF+R+SFV+EDCG
Sbjct: 358 QASPSILLDDGLVYVYRVQVTPAKVYFYGPEINVSNRVVRNFSADIENFLRISFVDEDCG 417
Query: 21 KIFSTDL 1
K+ +TDL
Sbjct: 418 KLRATDL 424
>ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
curcas]
Length = 1144
Score = 429 bits (1104), Expect = e-117
Identities = 216/428 (50%), Positives = 294/428 (68%), Gaps = 1/428 (0%)
Frame = -3
Query: 1281 SFTLNMGGKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQ 1102
+F +++ GKT+QVYGFP VT VK FLE ++G+ +VFA+K+R K G+R YA+VQ
Sbjct: 12 NFRISLMGKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGRRK--YAIVQ 69
Query: 1101 FLTSKDAEIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEE 922
F T++DAE+I + K+ Y SYLK R ++ DI P PR L + LH GC IS+E
Sbjct: 70 FQTARDAELIISLTNKR-LRYGTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKE 128
Query: 921 ALGVLWSFTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVI 742
VLW+ T V V+FGF M+K+ FFL+ G YKLELSYE++W ++LHCP + K+L+I
Sbjct: 129 KFSVLWTGTNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLI 188
Query: 741 QVQAAPRIYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPY 562
Q+ APRI+E + F + E P+ N K+ D+QW+RT DFTP C IG S LCLE P
Sbjct: 189 QLYGAPRIFEKEIAT-FNVFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPS 247
Query: 561 YCDLPDFRDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQ 382
++P F++ F YYKE G L+N +++SR+LDLVPIV P G+++P++ILF+VN LVQ
Sbjct: 248 SINVPKFQENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQ 307
Query: 381 NGTLMGPTLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNI 202
NG L G L F+ V P I IE+AL K+ K ++P++WL++QY +Y KS
Sbjct: 308 NGCLPGSALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKC 367
Query: 201 QPPSPAIA-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDC 25
P SP+I+ GLVY+ RVQITP KVYF GPE+NVSNRVIR+YS+DI+NF+RVSFV+E+
Sbjct: 368 HPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEEL 427
Query: 24 GKIFSTDL 1
KI+STDL
Sbjct: 428 EKIYSTDL 435
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 427 bits (1099), Expect = e-117
Identities = 221/421 (52%), Positives = 288/421 (68%), Gaps = 1/421 (0%)
Frame = -3
Query: 1260 GKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSKDA 1081
GKT+QV FP +V A+ VK FLE YTG E+V+A+K+R K G RAYA+VQF S DA
Sbjct: 2 GKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG---RAYAIVQFTKSTDA 58
Query: 1080 EIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVLWS 901
E+I ++ + Y SYLK R +E DI P PR L ++ LH GC +S E VLW
Sbjct: 59 ELIIRLTNQRLY-YGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117
Query: 900 FTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAAPR 721
V V+FG M+K+ F L+ Y+L+L YE+IW ++LH P Q SK+L+IQ+ APR
Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177
Query: 720 IYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLPDF 541
IYE V + L+ E+P+LNYF ++ DDQW+RTTDFT + IGQS LCLELPYY LP+F
Sbjct: 178 IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNF 237
Query: 540 RDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLMGP 361
R+ F YYKE G L++ SYSR+L+LVPIV P GI++PY+ILFK+N LVQNG + GP
Sbjct: 238 RENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGP 297
Query: 360 TLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPPSPAI 181
L +F+ V+P + YI++AL K+ K F P+KWL +QY Y S P SP I
Sbjct: 298 ALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357
Query: 180 A-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIFSTD 4
+ DDGLV V RVQITPS+VYF GPEINVSNRV+R++ +DIDNF+R++FV+E+ KI STD
Sbjct: 358 SLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTD 417
Query: 3 L 1
L
Sbjct: 418 L 418
>ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596568|ref|XP_012072322.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596570|ref|XP_012072324.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas]
Length = 1127
Score = 426 bits (1096), Expect = e-116
Identities = 215/421 (51%), Positives = 289/421 (68%), Gaps = 1/421 (0%)
Frame = -3
Query: 1260 GKTVQVYGFPLSVTAQRVKNFLEKYTGDESVFAVKVRHPKVIGKRSRAYAVVQFLTSKDA 1081
GKT+QVYGFP VT VK FLE ++G+ +VFA+K+R K G+R YA+VQF T++DA
Sbjct: 2 GKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGRRK--YAIVQFQTARDA 59
Query: 1080 EIIYNEAQKQSFSYERSYLKVRYVERDIAPNPRKHLFVLKDTVLHLGCLISEEALGVLWS 901
E+I + K+ Y SYLK R ++ DI P PR L + LH GC IS+E VLW+
Sbjct: 60 ELIISLTNKR-LRYGTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVLWT 118
Query: 900 FTGVKVDFGFNMKKIYFFLTQGTQSYKLELSYESIWDVQLHCPHAQHSKFLVIQVQAAPR 721
T V V+FGF M+K+ FFL+ G YKLELSYE++W ++LHCP + K+L+IQ+ APR
Sbjct: 119 GTNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGAPR 178
Query: 720 IYEMVVPNLFLIHEDPILNYFKEIQDDQWIRTTDFTPACSIGQSVALCLELPYYCDLPDF 541
I+E + F + E P+ N K+ D+QW+RT DFTP C IG S LCLE P ++P F
Sbjct: 179 IFEKEIAT-FNVFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKF 237
Query: 540 RDYFFYYKEVVGHVSLKNTDSYSRSLDLVPIVEPRHGIEVPYKILFKVNHLVQNGTLMGP 361
++ F YYKE G L+N +++SR+LDLVPIV P G+++P++ILF+VN LVQNG L G
Sbjct: 238 QENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLPGS 297
Query: 360 TLTDDFFHFVSPHKFPITYIEYALGKMARWKTSNFNPAKWLNDQYLEYGKSNIQPPSPAI 181
L F+ V P I IE+AL K+ K ++P++WL++QY +Y KS P SP+I
Sbjct: 298 ALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPRSPSI 357
Query: 180 A-DDGLVYVHRVQITPSKVYFYGPEINVSNRVIRNYSEDIDNFVRVSFVEEDCGKIFSTD 4
+ GLVY+ RVQITP KVYF GPE+NVSNRVIR+YS+DI+NF+RVSFV+E+ KI+STD
Sbjct: 358 SLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKIYSTD 417
Query: 3 L 1
L
Sbjct: 418 L 418