BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00016459
         (2443 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008784482.1| PREDICTED: DNA-directed RNA polymerases IV a...  1118   0.0  
ref|XP_010937061.1| PREDICTED: DNA-directed RNA polymerases IV a...  1118   0.0  
ref|XP_009413518.1| PREDICTED: DNA-directed RNA polymerases IV a...  1101   0.0  
gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticu...  1004   0.0  
ref|XP_012703111.1| PREDICTED: DNA-directed RNA polymerases IV a...   999   0.0  
ref|XP_003577435.2| PREDICTED: DNA-directed RNA polymerases IV a...   993   0.0  
ref|XP_010237620.1| PREDICTED: DNA-directed RNA polymerases IV a...   993   0.0  
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerases IV a...   990   0.0  
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami...   988   0.0  
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...   985   0.0  
gb|EMT10124.1| DNA-directed RNA polymerase II subunit RPB2 [Aegi...   983   0.0  
gb|ADB19860.1| mutant required to maintain repression 7-3/RNA po...   982   0.0  
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ...   982   0.0  
tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subuni...   982   0.0  
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S...   981   0.0  
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a...   980   0.0  
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...   979   0.0  
ref|NP_001054041.1| Os04g0641000, partial [Oryza sativa Japonica...   976   0.0  
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]         976   0.0  
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]    972   0.0  

>ref|XP_008784482.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Phoenix dactylifera]
          Length = 1189

 Score = 1118 bits (2892), Expect = 0.0
 Identities = 535/732 (73%), Positives = 634/732 (86%), Gaps = 13/732 (1%)
 Frame = +2

Query: 287  PDCQVGNLDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVV 466
            P+  + +L++NV +LE+FCK+A+R+FF E+ LI+HQINS+N+FI +G+Q+LFDSLGE+ V
Sbjct: 18   PNNGIEDLNMNVGSLEKFCKEAARSFFAEWGLISHQINSYNEFIGHGIQDLFDSLGEVNV 77

Query: 467  KPGYDPSKGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSK 646
            +PGYDPSK  G +WRHAT+++GKVRLEKPSFW+ R+D  EE LKLLP+HARL+NMTYSS+
Sbjct: 78   EPGYDPSKKRGAEWRHATVSFGKVRLEKPSFWSGRDDLPEENLKLLPRHARLQNMTYSSQ 137

Query: 647  LKVEVRVQVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKS 826
            LKVEVRVQVY  EKSDKAKTGKD YI K V++D KKEI IG +PVM++SK CWL T DKS
Sbjct: 138  LKVEVRVQVYTQEKSDKAKTGKDAYIHKNVVSDKKKEIAIGRIPVMIRSKLCWLHTLDKS 197

Query: 827  DCLYDSGGYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASK 1006
            DCL+DSGGYF++KG EKTFIAQEQR L R+WVTDKP+WT S++SEMK+KR+Y+KLV+A K
Sbjct: 198  DCLFDSGGYFLIKGMEKTFIAQEQRHLARVWVTDKPSWTVSYLSEMKRKRIYIKLVEAPK 257

Query: 1007 IDCLNGGKLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDA 1186
             +  +GGK+++ +FLYAT+PVWIMFFALGA+SDKEVF+MIDL      L NIILAT+++A
Sbjct: 258  AEGFSGGKVVNFFFLYATIPVWIMFFALGASSDKEVFEMIDLGESSADLINIILATVKNA 317

Query: 1187 DGQCNCFRESG-----------KSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHRE 1333
            D     FRE             K++DYVN  +K +KFPP+ESFDEY+ K+LFP ISGHR+
Sbjct: 318  DEHYKKFREDADEHDKNFRRVDKAQDYVNSQVKVSKFPPSESFDEYVDKFLFPNISGHRQ 377

Query: 1334 KALFLGYIVKCLLLSCSGKRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQ 1513
            KALFLGY+VKCLLL+C GKRKCDNKDDFRNKRLDL GELLARELR+HIRHAE+RMVKAMQ
Sbjct: 378  KALFLGYMVKCLLLACFGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHAERRMVKAMQ 437

Query: 1514 RDLYGDRDLQLIERFWDASIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMM 1693
            RDLYGDRDLQLIER+ DASIITNGLNR+FSTGAWCHPY+RTERCSGIVATLRRTNPLQMM
Sbjct: 438  RDLYGDRDLQLIERYLDASIITNGLNRAFSTGAWCHPYKRTERCSGIVATLRRTNPLQMM 497

Query: 1694 SDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEP 1873
            SDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLA+TALVS +++EP
Sbjct: 498  SDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTALVSLKVTEP 557

Query: 1874 ILDKLVSCGMEKLDQVSVTSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQV 2053
            ILDKL+SCGMEKLD++S++S+S MDKVF+NGDW+GVC DS SF+   + MRRA+LI+ QV
Sbjct: 558  ILDKLISCGMEKLDEISLSSISNMDKVFMNGDWVGVCADSTSFVAKLRCMRRARLIHPQV 617

Query: 2054 EIKLDKHQREVRIFSDTGRLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEE 2233
            EIK DKHQREVRIFSD GR+LRPLL+VENL+K   LKGGV SFQ L++EG+IE IGVEEE
Sbjct: 618  EIKRDKHQREVRIFSDAGRILRPLLIVENLKKTSKLKGGVCSFQYLMDEGIIELIGVEEE 677

Query: 2234 EDCITAWGIRYLLQQNSSQPA--YSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKH 2407
            EDC TAWGIR+L   +   PA  YSHCE D SF++GLSCGIIPFANHN ARRVL+QAEKH
Sbjct: 678  EDCHTAWGIRHLFMGDEGGPAPKYSHCELDVSFLLGLSCGIIPFANHNFARRVLYQAEKH 737

Query: 2408 SHQAVGFSTTNP 2443
            S QA+GFSTTNP
Sbjct: 738  SQQAIGFSTTNP 749


>ref|XP_010937061.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Elaeis guineensis]
          Length = 1189

 Score = 1118 bits (2891), Expect = 0.0
 Identities = 534/732 (72%), Positives = 632/732 (86%), Gaps = 13/732 (1%)
 Frame = +2

Query: 287  PDCQVGNLDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVV 466
            P+    +LD+NV +LE+FCK+A+R+FF E+ LI+HQINS+N+FI +G+Q+LFDSLGE+ V
Sbjct: 18   PNNGTEDLDMNVGSLEKFCKEAARSFFAEWGLISHQINSYNEFIEHGIQDLFDSLGEVNV 77

Query: 467  KPGYDPSKGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSK 646
            +PGYDPSK  G +WRHAT+++GKVRLEKPSFW+ R+D  EE LKLLP+HARL+NMTYSS+
Sbjct: 78   EPGYDPSKKRGAEWRHATVSFGKVRLEKPSFWSGRDDLPEENLKLLPRHARLQNMTYSSQ 137

Query: 647  LKVEVRVQVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKS 826
            +KVEVRV VY  EKSDKAKTGKD YI K V++D KKEI IG +PVM++SK CWL T DKS
Sbjct: 138  MKVEVRVLVYTQEKSDKAKTGKDAYIVKNVVSDKKKEIAIGRIPVMIRSKLCWLHTLDKS 197

Query: 827  DCLYDSGGYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASK 1006
            DCL+DSGGYF++KG EKTFIAQEQR L R+WVTDKP+W  S++SE+K+KR+Y+KLV+A K
Sbjct: 198  DCLFDSGGYFLIKGMEKTFIAQEQRHLARVWVTDKPSWAVSYLSEIKRKRIYIKLVEAPK 257

Query: 1007 IDCLNGGKLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDA 1186
             +  +GGK+++ +FLYAT+PVWIMFFALGA+SDKEVF+MIDL      L NIILAT+++A
Sbjct: 258  AEGFSGGKVVNFFFLYATIPVWIMFFALGASSDKEVFEMIDLGESSADLINIILATVKNA 317

Query: 1187 DGQCNCFRESG-----------KSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHRE 1333
            D     FRE             K++DYVNG +K +KFPP+ESFDEY+ K+LFP I GHR+
Sbjct: 318  DEHYKKFREDADEHDKNFRRIDKAQDYVNGQVKVSKFPPSESFDEYVDKFLFPNIYGHRQ 377

Query: 1334 KALFLGYIVKCLLLSCSGKRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQ 1513
            KALFLGY+VKCLLL+C GKRKCDNKDDFRNKRLDL GELLARELR+HIRHAE+RMVKAMQ
Sbjct: 378  KALFLGYMVKCLLLACFGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHAERRMVKAMQ 437

Query: 1514 RDLYGDRDLQLIERFWDASIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMM 1693
            RDLYGDRDLQLIER+ DASIITNGLNR+FSTGAWCHPY+RTERCSGIVATLRRTNPLQMM
Sbjct: 438  RDLYGDRDLQLIERYLDASIITNGLNRAFSTGAWCHPYKRTERCSGIVATLRRTNPLQMM 497

Query: 1694 SDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEP 1873
            SDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLA+TALVS +++EP
Sbjct: 498  SDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTALVSLKVTEP 557

Query: 1874 ILDKLVSCGMEKLDQVSVTSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQV 2053
            ILDKL+SCGMEKLD++S+TS+S MDKVFLNGDW+GVC DS SF+   + MRRA LI+ QV
Sbjct: 558  ILDKLISCGMEKLDEISLTSVSSMDKVFLNGDWVGVCADSSSFVARLRCMRRATLIHSQV 617

Query: 2054 EIKLDKHQREVRIFSDTGRLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEE 2233
            EIK DKHQREVRIFSD GR+LRPLL+VENL+KI  LKGGV SFQ L+++G+IE IGVEEE
Sbjct: 618  EIKRDKHQREVRIFSDAGRILRPLLIVENLEKISKLKGGVCSFQHLMDQGIIELIGVEEE 677

Query: 2234 EDCITAWGIRYLLQQNSSQPA--YSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKH 2407
            EDC TAWGIR+L   +  QPA  Y+HCE D SF++GLSCGIIPFANHN ARRVL+QAEKH
Sbjct: 678  EDCPTAWGIRHLFMGDEGQPAPKYTHCELDVSFLLGLSCGIIPFANHNFARRVLYQAEKH 737

Query: 2408 SHQAVGFSTTNP 2443
            S QA+GFSTTNP
Sbjct: 738  SQQAIGFSTTNP 749


>ref|XP_009413518.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Musa
            acuminata subsp. malaccensis]
            gi|695051016|ref|XP_009413519.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Musa acuminata
            subsp. malaccensis]
          Length = 1198

 Score = 1101 bits (2847), Expect = 0.0
 Identities = 527/713 (73%), Positives = 620/713 (86%), Gaps = 2/713 (0%)
 Frame = +2

Query: 311  DINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPSK 490
            D+N+  LE+FCK+A+RAFF E+ LINHQI+S+N F+ +G+Q+LFD+LG++VV+PGYDPSK
Sbjct: 46   DLNIGNLEKFCKEAARAFFKEWGLINHQISSYNDFVEHGIQDLFDTLGDVVVEPGYDPSK 105

Query: 491  GGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRVQ 670
             G G WRHA+IT+GKVRLEKP FW E+ND EE  LKLLP+HARL+NMTYSS++KV+VRVQ
Sbjct: 106  KGDGAWRHASITFGKVRLEKPEFWPEKNDIEEGSLKLLPRHARLQNMTYSSQMKVKVRVQ 165

Query: 671  VYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSGG 850
            VY+ EKSDKAK G   YI K+V NDD+ EI IG +PVMV+S  CWL    KSDCL+DSGG
Sbjct: 166  VYVQEKSDKAKIGNSSYIQKRVQNDDEGEITIGRLPVMVQSNLCWLSALGKSDCLFDSGG 225

Query: 851  YFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGGK 1030
            YF++KG EKTFI QEQRCLTRLWV DKP  T S++SE+K+KR+YVKLV+A K +  +GGK
Sbjct: 226  YFLIKGMEKTFIGQEQRCLTRLWVIDKPVATVSYLSEIKRKRIYVKLVEAPKAEGFHGGK 285

Query: 1031 LISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCFR 1210
            +IS+YFLYATMP+WIMFFALGA+SDKEV +MIDL  CD  + NIILATI+DAD Q   FR
Sbjct: 286  VISVYFLYATMPIWIMFFALGASSDKEVLEMIDLKDCDAGMINIILATIKDADEQFEGFR 345

Query: 1211 ESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSGK 1390
               K+R++VN LIK+AKFPP+ESFDEY++KYLFP I GHR KA FLGY+VKCLLLS  GK
Sbjct: 346  SLDKAREHVNALIKNAKFPPSESFDEYVAKYLFPNIIGHRTKAHFLGYMVKCLLLSSFGK 405

Query: 1391 RKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDAS 1570
            RKCDNKDDFRNKRLDL GELLARELR+HIRHAEKRMV+AMQRDL GDRDLQ IER+ DAS
Sbjct: 406  RKCDNKDDFRNKRLDLAGELLARELRAHIRHAEKRMVRAMQRDLSGDRDLQPIERYLDAS 465

Query: 1571 IITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDA 1750
            IITNGLNR+FSTGAW HPY++TER SGIVATLRRTNPLQMMSD+RKTRQQVAYAGKAGDA
Sbjct: 466  IITNGLNRAFSTGAWTHPYKKTERLSGIVATLRRTNPLQMMSDMRKTRQQVAYAGKAGDA 525

Query: 1751 RYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSVT 1930
            RYPNPSYWGKLCFLSTPDGENCGLVKNLA+TA+VSS+I EPILDKL++CGMEKLD++S++
Sbjct: 526  RYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAVVSSKIMEPILDKLIACGMEKLDEISLS 585

Query: 1931 SLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTGR 2110
            SLS+M KVFLNGDW+GVC D  SF    + MRRA+LI+ QVEIK DKHQ+EVRIF+D GR
Sbjct: 586  SLSQMHKVFLNGDWVGVCPDMSSFADRLRSMRRAKLIHPQVEIKRDKHQKEVRIFTDAGR 645

Query: 2111 LLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNS-- 2284
            +LRPLL+VENL+KI+NLKGGV SFQSL+++ +IE IGVEEEEDC TAWGI+YLL  N   
Sbjct: 646  ILRPLLIVENLKKIRNLKGGVCSFQSLMDQEIIELIGVEEEEDCQTAWGIKYLLAVNEGI 705

Query: 2285 SQPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
            S P YSHCE DPSF++GLSCGIIPFA+HN ARRVL+Q+EKHS QA+GFSTTNP
Sbjct: 706  SAPNYSHCELDPSFLLGLSCGIIPFASHNFARRVLYQSEKHSQQAIGFSTTNP 758


>gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticum urartu]
          Length = 1269

 Score = 1004 bits (2595), Expect = 0.0
 Identities = 468/715 (65%), Positives = 592/715 (82%), Gaps = 3/715 (0%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D+++ +LE+FCK+ASR+FF+EF LI+HQINS+N+F+++GLQELFDSLGE+ V+P YD S
Sbjct: 81   IDMSLGSLEKFCKEASRSFFDEFGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDLS 140

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FW+ R+D +EE LKL P+HARL+NMTYSSK++VEV +
Sbjct: 141  KKGPGGWKHAVIRFGRVKLEKPVFWSGRDDVDEESLKLKPRHARLQNMTYSSKMEVEVHI 200

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            Q+Y +EKSDK+KT KDP+  K+VL D+   + IG +PVMV S  CWL    +SDCLYDSG
Sbjct: 201  QIYSMEKSDKSKTEKDPFGHKRVLMDETHVVNIGRLPVMVNSNLCWLRELRESDCLYDSG 260

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+++G EK FIAQEQRCLTR+W+ D+P WT S++SE+K++R+YVKL+D++K +  +G 
Sbjct: 261  GYFLIRGMEKIFIAQEQRCLTRIWIADRPVWTVSYLSEIKRRRIYVKLIDSTKNNDFSGS 320

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYA MP+W+MFFALG +SDKE F MID+  CD S+ N I ATI ++D  C  F
Sbjct: 321  KIISISFLYANMPIWLMFFALGVSSDKEAFDMIDMGDCDASVINAISATISESDELCEGF 380

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R  V+ L+KS+KFPP ESFD+YI+KYLFP I G+R KALFLGY+VKCLL++ +G
Sbjct: 381  RKSDKARQCVDDLVKSSKFPPGESFDDYIAKYLFPGIKGNRNKALFLGYMVKCLLMAFTG 440

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KR+CDNKDDFRNKRL+L G+LL RELR+H+RHAE+ MVKAMQRDL  DRDL+   R+ DA
Sbjct: 441  KRRCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLEFPTRYLDA 500

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SIITNG+NR+F+TG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRK+RQQVAYAGKAGD
Sbjct: 501  SIITNGINRAFATGSWCHPYKRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKAGD 560

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGK+CF+STPDGENCGLVKNLA+TA+VSSR+++P++D+ VSCGM KLD++  
Sbjct: 561  ARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVAQPLIDRFVSCGMNKLDEIPA 620

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQR--EVRIFSD 2101
              + KMDK+FLNGDW+G C D  SF++  + MRR  LI+ QVEIK DKHQ   EVR+FSD
Sbjct: 621  KQIPKMDKIFLNGDWVGSCADPASFVMRLRCMRRGGLIDPQVEIKRDKHQSPGEVRVFSD 680

Query: 2102 TGRLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQN 2281
             GRLLRPLLVVENL KI   KG   SFQ+L+ + +IEFIGVEEEED   AWGIR+L Q +
Sbjct: 681  AGRLLRPLLVVENLNKITKRKGSPYSFQALMQQEIIEFIGVEEEEDIQCAWGIRHLFQSS 740

Query: 2282 SSQ-PAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +   Y+HCE D SF++GLSC +IPFANHN ARRVL+QAEKHS QA+G+STTNP
Sbjct: 741  GDEVSGYTHCELDLSFLLGLSCSLIPFANHNFARRVLYQAEKHSQQAIGYSTTNP 795


>ref|XP_012703111.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Setaria italica]
          Length = 1234

 Score =  999 bits (2582), Expect = 0.0
 Identities = 458/712 (64%), Positives = 598/712 (83%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQ+LFDSLG+++V+PGYDPS
Sbjct: 86   IDMSVESLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQKLFDSLGDVIVEPGYDPS 145

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FW+ +++ +   +   P+HARL+NMTY+S++KVEV +
Sbjct: 146  KKGSGGWKHAIIKFGRVKLEKPVFWSGKDEVD---IDFKPRHARLQNMTYASRIKVEVTI 202

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            +VY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L    +SDCL+D+G
Sbjct: 203  KVYSLEKSDKSKTGNDDFVQKRDFMNETHWIYIGRLPVMVKSNLCLLHNLKESDCLFDAG 262

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQEQRCL+RLW++D+P WT S +SE+K++R+Y+KLV+++K D  +G 
Sbjct: 263  GYFLVKGMEKVFIAQEQRCLSRLWISDRPCWTVSFMSEIKRRRIYIKLVESTKSDDFSGS 322

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYATMP+W+MFFALG +SDKEVF +ID+   D S+ N I ATI+++D  C  F
Sbjct: 323  KIISISFLYATMPIWLMFFALGISSDKEVFDVIDMQDGDASVINTISATIKESDELCEGF 382

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+K+++FPP ESFD+Y+ ++LFP ISGHR KALFLGY+VKCLL++ +G
Sbjct: 383  RKSDKARQYVDELVKNSRFPPAESFDDYVDRFLFPDISGHRNKALFLGYMVKCLLMAFTG 442

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELLARELR+HIR AE+RMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 443  KRKCDNKDDFRNKRLDLAGELLARELRAHIRLAERRMVKAIQRDLNSDRELQDLERYLDA 502

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY++TERCSGIVATLRRTNPLQM+SDLRKTRQ+VAYAGKAGD
Sbjct: 503  SIVTNGLNRAFSTGSWCHPYKKTERCSGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGD 562

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+++  
Sbjct: 563  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVEQPLIESFISCGMSKLNEIPT 622

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
             ++ +MDK+FLNG+W+G C DS SF++  + MRR+ LI+ QVEIK DKHQ+EVR+FS+ G
Sbjct: 623  ENIQRMDKIFLNGNWVGCCTDSASFVLRLRCMRRSSLIHPQVEIKRDKHQKEVRVFSEAG 682

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SFQ L+ + +IEFIGVEEEED   AWGIR+L      
Sbjct: 683  RILRPLLVVENLNKIRKPKGRSYSFQELIQQEIIEFIGVEEEEDIQCAWGIRHLFGSEGE 742

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 743  ISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 794


>ref|XP_003577435.2| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            isoform X2 [Brachypodium distachyon]
          Length = 1192

 Score =  993 bits (2566), Expect = 0.0
 Identities = 467/714 (65%), Positives = 586/714 (82%), Gaps = 3/714 (0%)
 Frame = +2

Query: 311  DINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPSK 490
            D+N+ +LE+FCK+ASR+FF E  LI+HQINS+N+FI++GLQELFDSLGE+ V+PGYDPSK
Sbjct: 39   DMNLTSLEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPSK 98

Query: 491  GGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRVQ 670
             G G WRHA I +GKV+LE+P FW+ + D +EE LKL P+HARL+NMTYSSK++VEV +Q
Sbjct: 99   KGPGGWRHAIIKFGKVKLEEPVFWSGKIDIDEESLKLKPRHARLQNMTYSSKMEVEVNIQ 158

Query: 671  VYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSGG 850
            VY +EKSDKAKTG D +  K+ + ++   + IG +PVMV S  CWL    +SDCL+DSGG
Sbjct: 159  VYSMEKSDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDSGG 218

Query: 851  YFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGGK 1030
            YF++KG EK FIAQEQRCLTR+WV D+P W  S++SEMK++RVY+KL+D++  + LNG K
Sbjct: 219  YFLIKGMEKIFIAQEQRCLTRIWVADQPCWNVSYLSEMKRRRVYIKLIDSTTNNDLNGAK 278

Query: 1031 LISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCFR 1210
            +IS+ FLYA MP+W++FFALG +SDKEVF MID+  CD S+ N I ATIR++D  C  FR
Sbjct: 279  IISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAIYATIRESDELCEGFR 338

Query: 1211 ESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSGK 1390
            +S K+R YV+ L+KS+KFPP E F +Y++KYLFP ISG+R K+ FLGY+VKCLL++ +GK
Sbjct: 339  QSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKSFFLGYMVKCLLMAFTGK 398

Query: 1391 RKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDAS 1570
            RKCDNKDDFRNKRL+L G+LL RELR+H+RHAE+ MVKAMQRDL  DRDLQ   R+ DAS
Sbjct: 399  RKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYLDAS 458

Query: 1571 IITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDA 1750
            IITNG+NR+F+TG+W HPY R ERCSGIVATLRRTNPLQMMSDLRK+RQQVAYAGK GDA
Sbjct: 459  IITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDA 518

Query: 1751 RYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSVT 1930
            RYPNPSYWGK+CF+STPDGENCGLVKNLA+TA+VSSR+ +P++D+ VSCGM KLD++S  
Sbjct: 519  RYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAK 578

Query: 1931 SLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQ--REVRIFSDT 2104
             + KMDK+FLNGDWIG C D  SF++  + MRRA LI+ QVEIK DKHQ   EVR+FSD 
Sbjct: 579  EIPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDA 638

Query: 2105 GRLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNS 2284
            GR+LRPLLVVENL KI+  K    +FQ+L+ + +IE+IGVEEEED   AWGIR+L   + 
Sbjct: 639  GRILRPLLVVENLNKIRKSKDRPYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSSG 698

Query: 2285 SQ-PAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
             +   Y+HCE D SF++GLSCG+IPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 699  EKVSGYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 752


>ref|XP_010237620.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            isoform X1 [Brachypodium distachyon]
          Length = 1213

 Score =  993 bits (2566), Expect = 0.0
 Identities = 467/714 (65%), Positives = 586/714 (82%), Gaps = 3/714 (0%)
 Frame = +2

Query: 311  DINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPSK 490
            D+N+ +LE+FCK+ASR+FF E  LI+HQINS+N+FI++GLQELFDSLGE+ V+PGYDPSK
Sbjct: 60   DMNLTSLEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPSK 119

Query: 491  GGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRVQ 670
             G G WRHA I +GKV+LE+P FW+ + D +EE LKL P+HARL+NMTYSSK++VEV +Q
Sbjct: 120  KGPGGWRHAIIKFGKVKLEEPVFWSGKIDIDEESLKLKPRHARLQNMTYSSKMEVEVNIQ 179

Query: 671  VYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSGG 850
            VY +EKSDKAKTG D +  K+ + ++   + IG +PVMV S  CWL    +SDCL+DSGG
Sbjct: 180  VYSMEKSDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDSGG 239

Query: 851  YFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGGK 1030
            YF++KG EK FIAQEQRCLTR+WV D+P W  S++SEMK++RVY+KL+D++  + LNG K
Sbjct: 240  YFLIKGMEKIFIAQEQRCLTRIWVADQPCWNVSYLSEMKRRRVYIKLIDSTTNNDLNGAK 299

Query: 1031 LISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCFR 1210
            +IS+ FLYA MP+W++FFALG +SDKEVF MID+  CD S+ N I ATIR++D  C  FR
Sbjct: 300  IISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAIYATIRESDELCEGFR 359

Query: 1211 ESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSGK 1390
            +S K+R YV+ L+KS+KFPP E F +Y++KYLFP ISG+R K+ FLGY+VKCLL++ +GK
Sbjct: 360  QSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKSFFLGYMVKCLLMAFTGK 419

Query: 1391 RKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDAS 1570
            RKCDNKDDFRNKRL+L G+LL RELR+H+RHAE+ MVKAMQRDL  DRDLQ   R+ DAS
Sbjct: 420  RKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYLDAS 479

Query: 1571 IITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDA 1750
            IITNG+NR+F+TG+W HPY R ERCSGIVATLRRTNPLQMMSDLRK+RQQVAYAGK GDA
Sbjct: 480  IITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDA 539

Query: 1751 RYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSVT 1930
            RYPNPSYWGK+CF+STPDGENCGLVKNLA+TA+VSSR+ +P++D+ VSCGM KLD++S  
Sbjct: 540  RYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAK 599

Query: 1931 SLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQ--REVRIFSDT 2104
             + KMDK+FLNGDWIG C D  SF++  + MRRA LI+ QVEIK DKHQ   EVR+FSD 
Sbjct: 600  EIPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDA 659

Query: 2105 GRLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNS 2284
            GR+LRPLLVVENL KI+  K    +FQ+L+ + +IE+IGVEEEED   AWGIR+L   + 
Sbjct: 660  GRILRPLLVVENLNKIRKSKDRPYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSSG 719

Query: 2285 SQ-PAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
             +   Y+HCE D SF++GLSCG+IPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 720  EKVSGYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 773


>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Brachypodium distachyon]
          Length = 1213

 Score =  990 bits (2560), Expect = 0.0
 Identities = 466/714 (65%), Positives = 585/714 (81%), Gaps = 3/714 (0%)
 Frame = +2

Query: 311  DINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPSK 490
            D+N+ +LE+FCK+ASR+FF E  LI+HQINS+N+F+++GLQELFDSLGE+ V+PGYDPSK
Sbjct: 60   DMNLTSLEKFCKEASRSFFEEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPGYDPSK 119

Query: 491  GGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRVQ 670
             G G WRHA I +GKV+LE+P FW+ +   +EE LKL P+HARL+NMTYSSK++VEV +Q
Sbjct: 120  KGPGGWRHAIIKFGKVKLEEPVFWSGKIGIDEESLKLKPRHARLQNMTYSSKMEVEVNIQ 179

Query: 671  VYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSGG 850
            VY +EKSDKAKTG D +  K+ + ++   + IG +PVMV S  CWL    +SDCL+DSGG
Sbjct: 180  VYSMEKSDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDSGG 239

Query: 851  YFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGGK 1030
            YF++KG EK FIAQEQRCLTR+WV D+P W  S++SEMK++RVY+KL+D++  + LNG K
Sbjct: 240  YFLIKGMEKIFIAQEQRCLTRIWVADRPCWNVSYLSEMKRRRVYIKLIDSTTNNDLNGAK 299

Query: 1031 LISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCFR 1210
            +IS+ FLYA MP+W++FFALG +SDKEVF MID+  CD S+ N I ATIR++D  C  FR
Sbjct: 300  IISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAISATIRESDELCEGFR 359

Query: 1211 ESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSGK 1390
            +S K+R YV+ L+KS+KFPP E F +Y++KYLFP ISG+R KA FLGY+VKCLL++ +GK
Sbjct: 360  QSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKAFFLGYMVKCLLMAFTGK 419

Query: 1391 RKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDAS 1570
            RKCDNKDDFRNKRL+L G+LL RELR+H+RHAE+ MVKAMQRDL  DRDLQ   R+ DAS
Sbjct: 420  RKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYLDAS 479

Query: 1571 IITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDA 1750
            IITNG+NR+F+TG+W HPY R ERCSGIVATLRRTNPLQMMSDLRK+RQQVAYAGK GDA
Sbjct: 480  IITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDA 539

Query: 1751 RYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSVT 1930
            RYPNPSYWGK+CF+STPDGENCGLVKNLA+TA+VSSR+ +P++D+ VSCGM KLD++S  
Sbjct: 540  RYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAK 599

Query: 1931 SLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQ--REVRIFSDT 2104
             + KMDK+FLNGDWIG C D  SF++  + MRRA LI+ QVEIK DKHQ   EVR+FSD 
Sbjct: 600  EIPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDA 659

Query: 2105 GRLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNS 2284
            GR+LRPLLVVENL KI+  K    +FQ+L+ + +IE+IGVEEEED   AWGIR+L   + 
Sbjct: 660  GRILRPLLVVENLNKIRKSKDRHYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSSG 719

Query: 2285 SQ-PAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
             +   Y+HCE D SF++GLSCG+IPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 720  EKVSGYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 773


>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score =  988 bits (2554), Expect = 0.0
 Identities = 458/712 (64%), Positives = 592/712 (83%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            ++++VE+LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 1014 INMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPS 1073

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+L+VEV +
Sbjct: 1074 KKGSGSWKHAIIKFGRVKLEKPVFWTGK---DEVSVDFKPWHARLQNMTYASRLRVEVTI 1130

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L +  +S+CL+D+G
Sbjct: 1131 QVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKESECLFDAG 1190

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQE RCL RLW++D+P WT S +SEMK++R+Y+KLV++++ +  +G 
Sbjct: 1191 GYFLVKGMEKVFIAQELRCLRRLWISDRPCWTISFMSEMKRRRIYIKLVESTRSEDFSGS 1250

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYATMPVW++FFALG +SDKE F +ID+  CD S+ N I ATI+++D  C  F
Sbjct: 1251 KIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDELCGGF 1310

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS+KFPP ESFD+YI+K+LFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 1311 RKSDKARQYVDELVKSSKFPPVESFDDYIAKFLFPGISGNRNKALFLGYMVKCLLMAFTG 1370

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+H+R AE+RMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 1371 KRKCDNKDDFRNKRLDLPGELLGRELRAHLRQAERRMVKAIQRDLNSDRELQDLERYIDA 1430

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 1431 SIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 1490

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+T++VSS++ +P+++  +SCGM KL+ +  
Sbjct: 1491 ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKVVQPLIESFISCGMNKLNDIPT 1550

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C DS SF+   + MRR+ LI+ QVEIK DKH +EVR+FSD G
Sbjct: 1551 EHIQRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLFSDAG 1610

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SFQ L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 1611 RILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 1670

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+ST+NP
Sbjct: 1671 ISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNP 1722


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            gi|241922081|gb|EER95225.1| hypothetical protein
            SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  985 bits (2547), Expect = 0.0
 Identities = 459/712 (64%), Positives = 589/712 (82%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+LE+FCK+ASR+FF+E  LI+HQINS+N F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 79   IDLSVESLEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQELFDSLGEVIVEPGYDPS 138

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+L VEV +
Sbjct: 139  KKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIVEVNI 195

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L +  +S+CL+D+G
Sbjct: 196  QVYSLEKSDKSKTGNDGFVQKRDFMNETHWIFIGLLPVMVKSNLCLLHSLKESECLFDAG 255

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQE RCL RLW+ D+P W  S +SEMK++R+Y+KLV++++ +  +G 
Sbjct: 256  GYFLVKGMEKVFIAQELRCLKRLWIIDRPCWMISFMSEMKRRRIYIKLVESTRSEDFSGS 315

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYATMPVW++FFALG +SDKE F +ID+  CD S+ N I ATI+++D  C  F
Sbjct: 316  KIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDELCEGF 375

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS++FPP ESFD+YI+++LFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 376  RKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTG 435

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+H+R AEKRMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 436  KRKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMVKAIQRDLNSDRELQDLERYIDA 495

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGL+R+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 496  SIVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 555

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+ +  
Sbjct: 556  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIESFISCGMSKLNDIPT 615

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C DS SF+   + MRR+ LI+ QVEIK DKH +EVR+FSD G
Sbjct: 616  EHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQVEIKRDKHHKEVRVFSDAG 675

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL+KI+  KG   SFQ L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 676  RILRPLLVVENLKKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 735

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 736  ISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 787


>gb|EMT10124.1| DNA-directed RNA polymerase II subunit RPB2 [Aegilops tauschii]
          Length = 1324

 Score =  983 bits (2541), Expect = 0.0
 Identities = 467/753 (62%), Positives = 592/753 (78%), Gaps = 41/753 (5%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D+++ +LE+FCK+ASR+FF+EF LI+HQINS+N+F+++GLQELFDSLGE+ V+P YD S
Sbjct: 81   IDMSLGSLEKFCKEASRSFFDEFGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDLS 140

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FW+ R+D +EE LKL P+HARL+NMTYSSK++VEV +
Sbjct: 141  KKGPGGWKHAVIRFGRVKLEKPVFWSGRDDVDEESLKLKPRHARLQNMTYSSKMEVEVHI 200

Query: 668  Q--------------------------------------VYILEKSDKAKTGKDPYICKK 733
            Q                                      +Y +EKSDK+KT KDP+  K+
Sbjct: 201  QQNSPLTEHEMEQSRNKWLLDVPRLAQQSATYVVVDITHIYSMEKSDKSKTEKDPFGHKR 260

Query: 734  VLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSGGYFIVKGAEKTFIAQEQRCLTR 913
            VL D+   + IG +PVMV S  CWL    +SDCLYDSGGYF+++G EK FIAQEQRCLTR
Sbjct: 261  VLMDETHVVNIGRLPVMVNSNLCWLRELRESDCLYDSGGYFLIRGMEKIFIAQEQRCLTR 320

Query: 914  LWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGGKLISLYFLYATMPVWIMFFALG 1093
            +W+ D+P WT S++SE+K++R+YVKL+D++K +  +G K+IS+ FLYA +P+W+MFFALG
Sbjct: 321  IWIADRPVWTVSYLSEIKRRRIYVKLIDSTKNNDFSGSKIISISFLYANLPIWLMFFALG 380

Query: 1094 AASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCFRESGKSRDYVNGLIKSAKFPPT 1273
             +SDKE F MID+  CD S+ N I ATI ++D  C  FR+S K+R  V+  +KS+KFPP 
Sbjct: 381  VSSDKEAFDMIDMGDCDASVINAISATISESDELCEGFRKSDKARQCVDDKVKSSKFPPG 440

Query: 1274 ESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSGKRKCDNKDDFRNKRLDLVGELL 1453
            ESFD+YI+KYLFP I G+R KALFLGY+VKCLL++ +GKR+CDNKDDFRNKRL+L G+LL
Sbjct: 441  ESFDDYIAKYLFPGIKGNRNKALFLGYMVKCLLMAFTGKRRCDNKDDFRNKRLELPGQLL 500

Query: 1454 ARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDASIITNGLNRSFSTGAWCHPYRR 1633
             RELR+H+RHAE+ MVKAMQRDL  DRDL+   R+ DASIITNG+NR+F+TG+WCHPYRR
Sbjct: 501  GRELRAHLRHAERLMVKAMQRDLNSDRDLEFPMRYLDASIITNGINRAFATGSWCHPYRR 560

Query: 1634 TERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDARYPNPSYWGKLCFLSTPDGEN 1813
             ERCSGIVATLRRTNPLQMMSDLRK+RQQVAYAGKAGDARYPNPSYWGK+CF+STPDGEN
Sbjct: 561  NERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMCFMSTPDGEN 620

Query: 1814 CGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSVTSLSKMDKVFLNGDWIGVCLDS 1993
            CGLVKNLA+TA+VSSR+++P++D+ VSCGM KLD++    + +MDK+FLNGDW+G C D 
Sbjct: 621  CGLVKNLAVTAIVSSRVAQPLIDRFVSCGMNKLDEIPAKKIPQMDKIFLNGDWVGSCADP 680

Query: 1994 KSFIVNFKRMRRAQLINFQVEIKLDKHQR--EVRIFSDTGRLLRPLLVVENLQKIKNLKG 2167
             SF++  + MRR  LI+ QVEIK DKHQ   EVR+FSD GRLLRPLLVVENL KI   KG
Sbjct: 681  ASFVMRLRCMRRGGLIDPQVEIKRDKHQSPGEVRVFSDAGRLLRPLLVVENLNKITKRKG 740

Query: 2168 GVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSSQ-PAYSHCEFDPSFVMGLSC 2344
               SFQ+L+ + +IEFIGVEEEED   AWGIR+L Q +  +   Y+HCE D SF++GLSC
Sbjct: 741  SPYSFQALMQQEIIEFIGVEEEEDIQCAWGIRHLFQSSGEEVSGYTHCELDLSFLLGLSC 800

Query: 2345 GIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
            G+IPFANHN ARRVL+QAEKHS QA+G+STTNP
Sbjct: 801  GLIPFANHNFARRVLYQAEKHSQQAIGYSTTNP 833


>gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
            largest subunit 2-3 [Zea mays]
          Length = 1094

 Score =  982 bits (2538), Expect = 0.0
 Identities = 457/712 (64%), Positives = 590/712 (82%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 80   IDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPS 139

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+L VEV +
Sbjct: 140  KKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIVEVTI 196

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L + ++S+CL+D+G
Sbjct: 197  QVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAG 256

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQEQRCL RLW++D+P WT S +SE+K++R+Y+KLV++++ +  +  
Sbjct: 257  GYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES 316

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+I++ FLYATMPVW++FFALG +SDKEVF MID+  CD S+ N I ATI+++D  C  F
Sbjct: 317  KIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDF 376

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS++FPP ESFD+YI+++LFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 377  RKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTG 436

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+ +R AEKRMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 437  KRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDA 496

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 497  SIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 556

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+ +  
Sbjct: 557  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPT 616

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C +S SF+   + MRR+ LI+ QVEIK DKH  EVR+F+D G
Sbjct: 617  EHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAG 676

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SF  L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 677  RILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 736

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 737  ISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 788


>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
            gi|670371411|ref|XP_008666978.1| PREDICTED: required to
            maintain repression7 isoform X1 [Zea mays]
            gi|283443696|gb|ADB19857.1| required to maintain
            repression 7/RNA polymerase D second largest subunit [Zea
            mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
            gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
            RNA polymerase subunit family protein [Zea mays]
          Length = 1229

 Score =  982 bits (2538), Expect = 0.0
 Identities = 457/712 (64%), Positives = 590/712 (82%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 80   IDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPS 139

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+L VEV +
Sbjct: 140  KKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIVEVTI 196

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L + ++S+CL+D+G
Sbjct: 197  QVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAG 256

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQEQRCL RLW++D+P WT S +SE+K++R+Y+KLV++++ +  +  
Sbjct: 257  GYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES 316

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+I++ FLYATMPVW++FFALG +SDKEVF MID+  CD S+ N I ATI+++D  C  F
Sbjct: 317  KIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDF 376

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS++FPP ESFD+YI+++LFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 377  RKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTG 436

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+ +R AEKRMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 437  KRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDA 496

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 497  SIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 556

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+ +  
Sbjct: 557  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPT 616

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C +S SF+   + MRR+ LI+ QVEIK DKH  EVR+F+D G
Sbjct: 617  EHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAG 676

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SF  L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 677  RILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 736

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 737  ISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 788


>tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1063

 Score =  982 bits (2538), Expect = 0.0
 Identities = 457/712 (64%), Positives = 590/712 (82%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 80   IDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPS 139

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+L VEV +
Sbjct: 140  KKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIVEVTI 196

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L + ++S+CL+D+G
Sbjct: 197  QVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAG 256

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQEQRCL RLW++D+P WT S +SE+K++R+Y+KLV++++ +  +  
Sbjct: 257  GYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES 316

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+I++ FLYATMPVW++FFALG +SDKEVF MID+  CD S+ N I ATI+++D  C  F
Sbjct: 317  KIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDF 376

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS++FPP ESFD+YI+++LFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 377  RKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTG 436

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+ +R AEKRMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 437  KRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDA 496

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 497  SIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 556

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+ +  
Sbjct: 557  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPT 616

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C +S SF+   + MRR+ LI+ QVEIK DKH  EVR+F+D G
Sbjct: 617  EHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAG 676

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SF  L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 677  RILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 736

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 737  ISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 788


>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            gi|241938382|gb|EES11527.1| hypothetical protein
            SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score =  981 bits (2535), Expect = 0.0
 Identities = 455/712 (63%), Positives = 588/712 (82%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 90   IDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPS 149

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+LKVEV +
Sbjct: 150  KKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLKVEVTI 206

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG + ++ K+   ++   I IG +PVMVKS  C L +  +S+CL+D+G
Sbjct: 207  QVYSLEKSDKSKTGNEGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKESECLFDAG 266

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQEQRCL RLWV+D+P W  S + E+K++R+Y+KLV++++ +  +G 
Sbjct: 267  GYFLVKGMEKVFIAQEQRCLKRLWVSDRPFWMISFMHEIKRRRIYIKLVESTRSEDFSGS 326

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYATMPVW++FFALG +SDKE F +ID+  CD S+ N I ATI+++D  C  F
Sbjct: 327  KVISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDELCKGF 386

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS++FPP ESFD+Y++++LFP I+G+R KA FLGY+VKCLL++ +G
Sbjct: 387  RKSDKARQYVDELVKSSRFPPAESFDDYVARFLFPDINGNRNKAFFLGYMVKCLLMAFTG 446

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+ +R  E+RMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 447  KRKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMVKAIQRDLNNDRELQDLERYIDA 506

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 507  SIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 566

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCFLSTPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+ +  
Sbjct: 567  ARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVGQPLIESFISCGMSKLNDIPT 626

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C DS SF+   + MRR+ +I+ QVEIK DKH +EVR+FSD G
Sbjct: 627  EHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVFSDAG 686

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SFQ L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 687  RILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 746

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF+MGLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 747  ISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 798


>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Oryza brachyantha]
          Length = 1250

 Score =  980 bits (2533), Expect = 0.0
 Identities = 461/735 (62%), Positives = 584/735 (79%), Gaps = 23/735 (3%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D+++ +LE+FCK+ASR+FF+E  LI+HQINS+N F+AYGLQELFDSLGE+ V+P YDPS
Sbjct: 76   IDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNDFVAYGLQELFDSLGEVTVEPSYDPS 135

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
              G G WRHA I +G+V+LE+P FW    D +EE LKL P+HARL+NMTYSSK+KVEV +
Sbjct: 136  NRGPGGWRHAIIKFGRVKLEEPVFWAHGYDIDEESLKLKPRHARLQNMTYSSKMKVEVHI 195

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY +EKSDKAKTG D +  KK + ++   I  G +PVMV S  CWL    +SDC +DSG
Sbjct: 196  QVYSMEKSDKAKTGNDKFSYKKDIINETHYINFGRLPVMVMSNLCWLHKLKESDCQFDSG 255

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF++KG EK FIAQEQ+CLTR+WV ++P WT S +S ++++R+Y+KL+D++K +     
Sbjct: 256  GYFLIKGMEKVFIAQEQKCLTRIWVEERPCWTVSFLSAIRRRRIYIKLIDSTKNE---DR 312

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYA MP+W+MFFALG  SDK+VF +ID+  CD  + N I ATI+++D  C  F
Sbjct: 313  KIISISFLYANMPIWLMFFALGITSDKDVFDVIDMQDCDACVINTISATIKESDELCEGF 372

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S ++R YV+ LIK +KFPP E FD+Y+++YLFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 373  RKSDRARQYVDELIKDSKFPPGEPFDDYVARYLFPGISGNRNKALFLGYMVKCLLMAFTG 432

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+HIRHAE+ MVKA+QRDL  DR+LQ ++R+ DA
Sbjct: 433  KRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSDRELQELDRYLDA 492

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SIITNGLNR+FSTG+WCHPY++ ERC+GIVATLRRTNPLQM+SDLRKTRQ+VAYAGKAGD
Sbjct: 493  SIITNGLNRAFSTGSWCHPYKKNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGD 552

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA+VSSR+++P++++ +SCGM KL ++  
Sbjct: 553  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAVVSSRVAQPVINRFISCGMNKLHEIPT 612

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + KMDK+FLNGDW+G C D  SF++  + MRR+ LI  QVEIK DKHQREVR+FSD G
Sbjct: 613  EEVPKMDKIFLNGDWVGSCTDPASFVLRLRCMRRSGLIGPQVEIKWDKHQREVRVFSDAG 672

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KGG  SFQSL+ + +IEFIGVEEEED  +AWGIR+L      
Sbjct: 673  RILRPLLVVENLNKIRRPKGGSYSFQSLMQQEIIEFIGVEEEEDTKSAWGIRHLFGSEGE 732

Query: 2288 QPA-----------------------YSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQA 2398
            + A                       Y+HCE D SF++GLSCGIIPFANHN ARRVL+Q+
Sbjct: 733  KAALVKTNRTEDAFTIRRDIEEGVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQS 792

Query: 2399 EKHSHQAVGFSTTNP 2443
            EKHS QA+G+STTNP
Sbjct: 793  EKHSQQAIGYSTTNP 807


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score =  979 bits (2530), Expect = 0.0
 Identities = 456/712 (64%), Positives = 589/712 (82%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 80   IDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPS 139

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+L VEV +
Sbjct: 140  KKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIVEVTI 196

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L + ++S+CL+D+G
Sbjct: 197  QVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAG 256

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQEQRCL RLW++D+P WT S +SE+K++R+Y+KLV++++ +  +  
Sbjct: 257  GYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES 316

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+I++ FLYATMPVW++FFALG +SDKEVF MID+  CD S+ N I ATI+++D  C  F
Sbjct: 317  KIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDF 376

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS++FPP ESFD+YI+++LFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 377  RKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTG 436

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+ +R AEKRMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 437  KRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDA 496

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 497  SIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 556

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYW KLCF+STPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+ +  
Sbjct: 557  ARYPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPT 616

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C +S SF+   + MRR+ LI+ QVEIK DKH  EVR+F+D G
Sbjct: 617  EHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAG 676

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SF  L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 677  RILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 736

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 737  ISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 788


>ref|NP_001054041.1| Os04g0641000, partial [Oryza sativa Japonica Group]
            gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
            sativa Japonica Group]
          Length = 1270

 Score =  976 bits (2524), Expect = 0.0
 Identities = 457/734 (62%), Positives = 585/734 (79%), Gaps = 22/734 (2%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D+++ +LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE+ V+P YDPS
Sbjct: 94   VDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPS 153

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
              G G WRHA I +G+V+LE+P FW+   D +E+ LKL P+HARL+NMTYSSK+KVEV  
Sbjct: 154  NRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHF 213

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY +EKSDKAKTG D +  K+ + ++   I IG +PVMV S  CWL    +SDC +DSG
Sbjct: 214  QVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSG 273

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF++KG EK FIAQEQ+CLTR+WV D+P W  S +S ++++R+Y+KL+D++  +  +GG
Sbjct: 274  GYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGG 333

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYA MP+W+MFFALG +SDK++F +I+++ CD  + N I ATI+++D  C  F
Sbjct: 334  KIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGF 393

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ LIK++KFPP E FD+YI+KYLFP+ISG+R KALFLGY+VKCLL++ +G
Sbjct: 394  RKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTG 453

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+HIRHAE+ MVKA+QRDL  +R+LQ  + + DA
Sbjct: 454  KRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDA 513

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SIITNGLNR+FSTG+WCHPY+R ERC+GIVATLRRTNPLQM+SDLRKTRQ+VAYAGKAGD
Sbjct: 514  SIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGD 573

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA VSSR++ P++D+ +SCGM KL ++  
Sbjct: 574  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPT 633

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNGDW+G C D  SF++  + MRR+ LI+ QVEIK DKHQREVR+FSD G
Sbjct: 634  EEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAG 693

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SFQ L+ + +IEFIGVEEEED  +AWGIR L +    
Sbjct: 694  RILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEE 753

Query: 2288 QP----------------------AYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAE 2401
             P                       Y+HCE D SF++GLSCGIIPFANHN ARRVL+Q+E
Sbjct: 754  APMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSE 813

Query: 2402 KHSHQAVGFSTTNP 2443
            KHS QA+G+STTNP
Sbjct: 814  KHSQQAIGYSTTNP 827


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score =  976 bits (2524), Expect = 0.0
 Identities = 457/734 (62%), Positives = 585/734 (79%), Gaps = 22/734 (2%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D+++ +LE+FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE+ V+P YDPS
Sbjct: 140  VDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPS 199

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
              G G WRHA I +G+V+LE+P FW+   D +E+ LKL P+HARL+NMTYSSK+KVEV  
Sbjct: 200  NRGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHF 259

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY +EKSDKAKTG D +  K+ + ++   I IG +PVMV S  CWL    +SDC +DSG
Sbjct: 260  QVYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSG 319

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF++KG EK FIAQEQ+CLTR+WV D+P W  S +S ++++R+Y+KL+D++  +  +GG
Sbjct: 320  GYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGG 379

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+IS+ FLYA MP+W+MFFALG +SDK++F +I+++ CD  + N I ATI+++D  C  F
Sbjct: 380  KIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGF 439

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ LIK++KFPP E FD+YI+KYLFP+ISG+R KALFLGY+VKCLL++ +G
Sbjct: 440  RKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTG 499

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+HIRHAE+ MVKA+QRDL  +R+LQ  + + DA
Sbjct: 500  KRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDA 559

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SIITNGLNR+FSTG+WCHPY+R ERC+GIVATLRRTNPLQM+SDLRKTRQ+VAYAGKAGD
Sbjct: 560  SIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGD 619

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA VSSR++ P++D+ +SCGM KL ++  
Sbjct: 620  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPT 679

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNGDW+G C D  SF++  + MRR+ LI+ QVEIK DKHQREVR+FSD G
Sbjct: 680  EEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAG 739

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SFQ L+ + +IEFIGVEEEED  +AWGIR L +    
Sbjct: 740  RILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEE 799

Query: 2288 QP----------------------AYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAE 2401
             P                       Y+HCE D SF++GLSCGIIPFANHN ARRVL+Q+E
Sbjct: 800  APMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSE 859

Query: 2402 KHSHQAVGFSTTNP 2443
            KHS QA+G+STTNP
Sbjct: 860  KHSQQAIGYSTTNP 873


>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score =  973 bits (2514), Expect = 0.0
 Identities = 454/712 (63%), Positives = 586/712 (82%)
 Frame = +2

Query: 308  LDINVETLERFCKDASRAFFNEFSLINHQINSFNQFIAYGLQELFDSLGELVVKPGYDPS 487
            +D++VE+L +FCK+ASR+FF+E  LI+HQINS+N+F+++GLQELFDSLGE++V+PGYDPS
Sbjct: 21   IDMSVESLGKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPS 80

Query: 488  KGGGGDWRHATITYGKVRLEKPSFWTERNDQEEECLKLLPKHARLKNMTYSSKLKVEVRV 667
            K G G W+HA I +G+V+LEKP FWT +   +E  +   P HARL+NMTY+S+L VEV +
Sbjct: 81   KKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIVEVTI 137

Query: 668  QVYILEKSDKAKTGKDPYICKKVLNDDKKEIVIGSMPVMVKSKQCWLDTEDKSDCLYDSG 847
            QVY LEKSDK+KTG D ++ K+   ++   I IG +PVMVKS  C L + ++S+CL+D+G
Sbjct: 138  QVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAG 197

Query: 848  GYFIVKGAEKTFIAQEQRCLTRLWVTDKPTWTASHISEMKKKRVYVKLVDASKIDCLNGG 1027
            GYF+VKG EK FIAQEQRCL RLW++D+P WT S +SE+K++R+Y+KLV++++ +  +  
Sbjct: 198  GYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES 257

Query: 1028 KLISLYFLYATMPVWIMFFALGAASDKEVFQMIDLDGCDTSLTNIILATIRDADGQCNCF 1207
            K+I++ FLYATMPVW+  FALG +SDKEVF MI +  CD S+ N I ATI+++D  C  F
Sbjct: 258  KIITISFLYATMPVWLXXFALGISSDKEVFDMIXMQDCDASVINTISATIKESDKLCEDF 317

Query: 1208 RESGKSRDYVNGLIKSAKFPPTESFDEYISKYLFPTISGHREKALFLGYIVKCLLLSCSG 1387
            R+S K+R YV+ L+KS++FPP ESFD+YI+++LFP ISG+R KALFLGY+VKCLL++ +G
Sbjct: 318  RKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTG 377

Query: 1388 KRKCDNKDDFRNKRLDLVGELLARELRSHIRHAEKRMVKAMQRDLYGDRDLQLIERFWDA 1567
            KRKCDNKDDFRNKRLDL GELL RELR+ +R AEKRMVKA+QRDL  DR+LQ +ER+ DA
Sbjct: 378  KRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDA 437

Query: 1568 SIITNGLNRSFSTGAWCHPYRRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGD 1747
            SI+TNGLNR+FSTG+WCHPY+R ERCSGIVATLRRTNPLQMMSDLRKTRQ+VAYAGKAGD
Sbjct: 438  SIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGD 497

Query: 1748 ARYPNPSYWGKLCFLSTPDGENCGLVKNLAITALVSSRISEPILDKLVSCGMEKLDQVSV 1927
            ARYPNPSYWGKLCF+STPDGENCGLVKNLA+TA+VSSR+ +P+++  +SCGM KL+ +  
Sbjct: 498  ARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPT 557

Query: 1928 TSLSKMDKVFLNGDWIGVCLDSKSFIVNFKRMRRAQLINFQVEIKLDKHQREVRIFSDTG 2107
              + +MDK+FLNG+W+G C +S SF+   + MRR+ LI+ QVEIK DKH  EVR+F+D G
Sbjct: 558  EHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAG 617

Query: 2108 RLLRPLLVVENLQKIKNLKGGVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQNSS 2287
            R+LRPLLVVENL KI+  KG   SF  L+ + +IEFIGVEEEED   AWGIR+L +   +
Sbjct: 618  RILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEGA 677

Query: 2288 QPAYSHCEFDPSFVMGLSCGIIPFANHNLARRVLFQAEKHSHQAVGFSTTNP 2443
              +Y+HCE DPSF++GLSCGIIPFANHN ARRVL+Q+EKHS QA+G+STTNP
Sbjct: 678  ISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNP 729