BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00014981
         (2050 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,...   650   0.0  
ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF,...   638   e-180
ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF,...   605   e-170
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   595   e-167
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   595   e-167
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   587   e-164
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   574   e-161
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   559   e-156
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              557   e-155
ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF,...   555   e-155
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   554   e-155
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   553   e-154
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   552   e-154
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   548   e-153
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   539   e-150
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,...   533   e-148
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,...   530   e-147
gb|KDP29141.1| hypothetical protein JCGZ_16530 [Jatropha curcas]      529   e-147
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   526   e-146
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   524   e-145

>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
            guineensis]
          Length = 570

 Score =  650 bits (1677), Expect = 0.0
 Identities = 360/590 (61%), Positives = 439/590 (74%), Gaps = 9/590 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVF 1742
            MEAGR  L+   SPP  P   H RN    TSV MLHDQAS T TS+PTT +   FP SV 
Sbjct: 1    MEAGRRLLA---SPPPNPTRTHLRNRS-PTSVPMLHDQASWTNTSVPTTPIACHFPISVL 56

Query: 1741 PQEPQHDNKTY-LMKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQPG 1565
              E   D KT  + KEE  +Q   D + V +G S  EE+EK +F +YL+Y +++LLY   
Sbjct: 57   SHEQHDDYKTNCISKEEKNVQ---DNQQVRSGRSCYEEKEKCEFAQYLRYSKQQLLYHQV 113

Query: 1564 LWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKAMM 1385
             WYPF + YT     LAM+ E + SD+   Q+       +N  + ++P +VLALAK+AMM
Sbjct: 114  FWYPFLSLYTEEKTPLAMAVEPIKSDSKGVQL-------ENCADFVRPTEVLALAKRAMM 166

Query: 1384 ASRKALLLAEKSSILESEFGQPPFLSQ-------EVVVKDETMVRSKRLLERQAKKRKVP 1226
            ASRKA  L E+S+IL +EF +  FLS        ++ +K+   VRSKRLLER++KKRKV 
Sbjct: 167  ASRKAASLMEESNILAAEFDESHFLSLNHRGSTVDISIKEVMAVRSKRLLERRSKKRKVG 226

Query: 1225 KKPDNVVCEVSSATLADLNKKIDKGL-NTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQE 1049
            K  +NV  EVS    +D+ +KIDKGL N +D  RLFLWGPETKQLLTVKEEKDLF+QIQ+
Sbjct: 227  KNSNNVAREVSKLMTSDMKEKIDKGLINQNDPLRLFLWGPETKQLLTVKEEKDLFVQIQD 286

Query: 1048 LMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHV 869
            ++RLE+V+QRL+LQF REPT++EWA+AVGMSCQVLQS L SG  SREKMI AN RLV+HV
Sbjct: 287  VVRLEEVQQRLRLQFDREPTLSEWAKAVGMSCQVLQSCLSSGKRSREKMINANLRLVVHV 346

Query: 868  AKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTI 689
            AKQY+ KGL++QDLLQEGSRGLMKSLEKFKPKAGCRF TYAYWWIRQSI++AIF NSR I
Sbjct: 347  AKQYEGKGLSVQDLLQEGSRGLMKSLEKFKPKAGCRFATYAYWWIRQSIRRAIFLNSRVI 406

Query: 688  RLPENVFALLKKITDARRSCIQQGHIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERA 509
            RLPENVF LLK+I +ARR  IQ+GH PTN+E+AKRVGI V KLE+LLL++RNP+SIQE  
Sbjct: 407  RLPENVFGLLKRIKNARRLFIQEGHAPTNEEIAKRVGISVEKLEALLLTTRNPISIQECV 466

Query: 508  WIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMH 329
            W DQDV FQEITADP VE P+L I+KQMMRQHV  LL +L  RERQII++R+GI      
Sbjct: 467  WTDQDVKFQEITADPGVETPELSIAKQMMRQHVRGLLRILKPRERQIIQYRFGI------ 520

Query: 328  HDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
             +NE+KSL+EIGAM+ L+KERVRQLESRALDKLK CL + GL AY+ LL+
Sbjct: 521  PNNEQKSLTEIGAMFGLSKERVRQLESRALDKLKGCLPSHGLGAYLELLL 570


>ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Musa
            acuminata subsp. malaccensis]
          Length = 577

 Score =  638 bits (1645), Expect = e-180
 Identities = 352/591 (59%), Positives = 433/591 (73%), Gaps = 10/591 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHL---LSTSVLMLHDQASRTITSLPTTSMVRQFPP 1751
            M+A RS LSP   P        P+NHL    + SV ML DQAS+ +  +P T +V     
Sbjct: 1    MKACRSLLSPVSIPMV------PKNHLRTPYTNSVPMLLDQASQPMIHVPATQVVHHITA 54

Query: 1750 SVFPQEPQHDNKT-YLMKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLY 1574
            SV  +E   D KT +L K E  +Q T D+   EAG S  EEREK +FN+YL+Y E +L Y
Sbjct: 55   SVLSKEQCDDLKTNHLNKVEKSVQATPDKWLTEAGRSCSEEREKHEFNQYLRYLECQLSY 114

Query: 1573 QPGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKK 1394
            QP LWYPF        + L +S     + T V+  S  M   +N  + + P DVLALAKK
Sbjct: 115  QPSLWYPFPP-LDEEKQSLPVSVGPEETSTCVSGDSSAM-QVENTKDCITPADVLALAKK 172

Query: 1393 AMMASRKALLLAEKSSILESEFGQPPFL------SQEVVVKDETMVRSKRLLERQAKKRK 1232
            AM+AS+ A  L E+S+IL  E  +  FL      + +   K+ET VRS++LLER++KKRK
Sbjct: 173  AMIASKIAASLVEQSNILGIEVDKSNFLGFDEGSNDDTFFKEETTVRSRKLLERRSKKRK 232

Query: 1231 VPKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQ 1052
            V K P+N V   +S+   + +KKIDK L+++D  RLFLWGPETKQLLTVKEEKDLF++I+
Sbjct: 233  VSKNPNNFVHHGASSVTINQSKKIDKRLDSNDPLRLFLWGPETKQLLTVKEEKDLFVKIE 292

Query: 1051 ELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIH 872
            +LMRLE+VK+RLQ Q  REPT+AEWA+AVGMSCQ LQS L SG  +REKMIYANFRLV+H
Sbjct: 293  DLMRLEEVKERLQSQSDREPTLAEWAQAVGMSCQDLQSCLSSGRRNREKMIYANFRLVVH 352

Query: 871  VAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRT 692
            VA+QY+ KGLNIQDLLQEGSRGLMKSLEKFKP+AGCRFPTYAYWWIRQSIKKAIF+NSRT
Sbjct: 353  VARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPRAGCRFPTYAYWWIRQSIKKAIFKNSRT 412

Query: 691  IRLPENVFALLKKITDARRSCIQQGHIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQER 512
            IRLPEN FA LK I +ARR CIQ+G +PTN+E+AKRVGI V KLE LLL+SR P+SIQ  
Sbjct: 413  IRLPENAFARLKSIREARRLCIQEGLLPTNEEIAKRVGITVQKLEILLLNSRYPISIQRH 472

Query: 511  AWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEM 332
             W+DQDVTFQE  ADP++EIPDL+I+KQMMRQHV  LL +L  RER I+++R+GI     
Sbjct: 473  PWLDQDVTFQETVADPKIEIPDLVIAKQMMRQHVRNLLNILKPRERVIVQYRFGI----- 527

Query: 331  HHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
               +E+KSLSEIGAMY L+KERVRQLES+AL KL+KCL +QGLEAY++LLI
Sbjct: 528  -RCSEQKSLSEIGAMYGLSKERVRQLESQALGKLRKCLQSQGLEAYLDLLI 577


>ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Phoenix dactylifera]
          Length = 529

 Score =  605 bits (1559), Expect = e-170
 Identities = 319/506 (63%), Positives = 386/506 (76%), Gaps = 7/506 (1%)
 Frame = -1

Query: 1675 LDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQPGLWYPFTASYTGGNKYLAMSTESV 1496
            +D R VE+G S  +E+ K +  + L+YFE +LLY    WYPF + YT     LAMSTE +
Sbjct: 37   VDDRQVESGRSCYKEKAKCEVAQCLRYFEHQLLYHQVFWYPFLSLYTEEKTPLAMSTEPI 96

Query: 1495 ASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKAMMASRKALLLAEKSSILESEFGQPP 1316
             SD+        ++P +N  + ++P DVLALAK+AM ASRKA  L E+S+IL +EF +  
Sbjct: 97   KSDSK-------LVPLENCADFVRPADVLALAKRAMRASRKAASLMEESNILAAEFDESH 149

Query: 1315 FL-------SQEVVVKDETMVRSKRLLERQAKKRKVPKKPDNVVCEVSSATLADLNKKID 1157
            FL       + ++ +K+E  VRSKRLLER++KKRKV K   NV CEVS +    +NKKID
Sbjct: 150  FLGLNHRGSTMDISIKEEVAVRSKRLLERRSKKRKVGKNSKNVACEVSKSMTTGMNKKID 209

Query: 1156 KGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQELMRLEKVKQRLQLQFGREPTVAEW 977
            KGL+ +D  RLFLWGPETKQLLTVKEEKDLF+QIQ+LMRLE+V+QRL+LQF REPT++EW
Sbjct: 210  KGLDPNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDLMRLEEVQQRLRLQFDREPTLSEW 269

Query: 976  AEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHVAKQYDRKGLNIQDLLQEGSRGLMK 797
            A+AVGMSCQ LQ  L SG  SREKMI AN RLV+HVAKQY+ KGLNI DLLQEGSRGLMK
Sbjct: 270  AQAVGMSCQALQCCLSSGKRSREKMINANLRLVVHVAKQYEGKGLNILDLLQEGSRGLMK 329

Query: 796  SLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTIRLPENVFALLKKITDARRSCIQQG 617
            SLEKFKPK GCRF TYAYWWIRQSI+KAIF NSR IRLPENVF LLK I  ARR  IQ+G
Sbjct: 330  SLEKFKPKVGCRFSTYAYWWIRQSIRKAIFLNSRVIRLPENVFGLLKSIKKARRLFIQEG 389

Query: 616  HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERAWIDQDVTFQEITADPEVEIPDLII 437
            H PTN+E+AK+VGI V +L+ LLL++RNP+SIQE AW DQDVTFQEIT DPEVE PDL +
Sbjct: 390  HAPTNEEIAKQVGISVERLKVLLLTTRNPISIQECAWTDQDVTFQEITGDPEVETPDLSM 449

Query: 436  SKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMHHDNERKSLSEIGAMYDLTKERVRQ 257
            +KQMMRQHV  LL +L  RERQII++R+GI       +N+ KSL+EIG M+ L+KERVRQ
Sbjct: 450  AKQMMRQHVRGLLRILKPRERQIIQYRFGI------PNNKPKSLTEIGVMFGLSKERVRQ 503

Query: 256  LESRALDKLKKCLSNQGLEAYINLLI 179
            LESRALDKLK C  + GL AY+ LL+
Sbjct: 504  LESRALDKLKDCRLSHGLGAYLELLL 529


>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  595 bits (1535), Expect = e-167
 Identities = 322/590 (54%), Positives = 423/590 (71%), Gaps = 9/590 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVF 1742
            ME GR+ +S     P  PRT    +   S+SV +LH+QA+  + S+PTTS+ R FP SV 
Sbjct: 1    MEVGRNLVSSASLFP--PRTQLKNS---SSSVTLLHEQANPIVVSMPTTSITRHFPASVL 55

Query: 1741 PQEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQP 1568
             QE + D + +L  ++E+   Q  LDRR +E  +   EE++  + + Y + FER+LLY P
Sbjct: 56   LQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWP 115

Query: 1567 GLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKAM 1388
            GLWY   + Y G    L+M T+S A+ T              +   ++P D L LAKKA+
Sbjct: 116  GLWYLLPSLYKGEKPLLSMVTQSTAAGTV-------------KNVDVRPCDALELAKKAV 162

Query: 1387 MASRKALLLAEKSSILESEFGQ-------PPFLSQEVVVKDETMVRSKRLLERQAKKRKV 1229
            +AS++A  LA+   +  ++  +       P  L+ ++ +++E  VRSKRLLERQ+K+R +
Sbjct: 163  LASKQAASLAKDYELFGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWI 222

Query: 1228 PKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQE 1049
            P+ P  VV E S++  +D++KKI +G +T+D  RLFLWGPETKQLLT KEE +LF+ +QE
Sbjct: 223  PR-PKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQE 281

Query: 1048 LMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHV 869
            L+RLE+VKQRLQ QF REPT+ EWAEAVGM+CQ LQS L SGN SREK+IYANFRLV+HV
Sbjct: 282  LIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHV 341

Query: 868  AKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTI 689
            AK Y  +GLN+QDLLQEGS GLMKSLEKFKP+AGCRF TYAYWWIRQ+I+KAIFQNSRTI
Sbjct: 342  AKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTI 401

Query: 688  RLPENVFALLKKITDARRSCIQQGHIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERA 509
            RLPENV++LL ++  A++  IQ+GH PTN+ELAKRVGI V KLE L +S+R PLSIQ+  
Sbjct: 402  RLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPV 461

Query: 508  WIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMH 329
            W DQD TFQEITAD EVE PDL ++KQ+MR+HV  L+ +L  +ER+II+ RYGI      
Sbjct: 462  WADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGI------ 515

Query: 328  HDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
             +NE KSL EIG+++ L+KERVRQLESRAL KLK+CLS+QGL AY +LL+
Sbjct: 516  ENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 565


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  595 bits (1533), Expect = e-167
 Identities = 320/590 (54%), Positives = 420/590 (71%), Gaps = 9/590 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVF 1742
            ME GR+ +S     P  PRT    +      V +LH+QA+  + S+PTTS+ R FP SV 
Sbjct: 1    MEVGRNLVSSASLFP--PRTQLKNSSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVL 58

Query: 1741 PQEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQP 1568
             QE + D + +L  ++E+   Q  LDRR +E  +   EE++  + + Y + FER+LLY P
Sbjct: 59   LQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWP 118

Query: 1567 GLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKAM 1388
            GLWY   + Y G    L+M T+S A+ T              +   ++P D L LAKKA+
Sbjct: 119  GLWYLLPSLYKGEKPLLSMVTQSTAAGTV-------------KNVDVRPCDALELAKKAV 165

Query: 1387 MASRKALLLAEKSSILESEFGQ-------PPFLSQEVVVKDETMVRSKRLLERQAKKRKV 1229
            +AS++A  LA+   +  ++  +       P  L+ ++ +++E  VRSKRLLERQ+K+R +
Sbjct: 166  LASKQAASLAKDYELFGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWI 225

Query: 1228 PKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQE 1049
            P+ P  VV E S++  +D++KKI +G +T+D  RLFLWGPETKQLLT KEE +LF+ +QE
Sbjct: 226  PR-PKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQE 284

Query: 1048 LMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHV 869
            L+RLE+VKQRLQ QF REPT+ EWAEAVGM+CQ LQS L SGN SREK+IYANFRLV+HV
Sbjct: 285  LIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHV 344

Query: 868  AKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTI 689
            AK Y  +GLN+QDLLQEGS GLMKSLEKFKP+AGCRF TYAYWWIRQ+I+KAIFQNSRTI
Sbjct: 345  AKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTI 404

Query: 688  RLPENVFALLKKITDARRSCIQQGHIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERA 509
            RLPENV++LL ++  A++  IQ+GH PTN+ELAKRVGI V KLE L +S+R PLSIQ+  
Sbjct: 405  RLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPV 464

Query: 508  WIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMH 329
            W DQD TFQEITAD EVE PDL ++KQ+MR+HV  L+ +L  +ER+II+ RYGI      
Sbjct: 465  WADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGI------ 518

Query: 328  HDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
             +NE KSL EIG+++ L+KERVRQLESRAL KLK+CLS+QGL AY +LL+
Sbjct: 519  ENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 568


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  587 bits (1513), Expect = e-164
 Identities = 311/559 (55%), Positives = 408/559 (72%), Gaps = 9/559 (1%)
 Frame = -1

Query: 1828 VLMLHDQASRTITSLPTTSMVRQFPPSVFPQEPQHDNKTYL--MKEENLIQTTLDRRHVE 1655
            V +LH+QA+  + S+PTTS+ R FP SV  QE + D + +L  ++E+   Q  LDRR +E
Sbjct: 2    VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 1654 AGLSSCEEREKQKFNEYLKYFERRLLYQPGLWYPFTASYTGGNKYLAMSTESVASDTNVA 1475
              +   EE++  + + Y + FER+LLY PGLWY   + Y G    L+M T+S A+ T   
Sbjct: 62   DKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTV-- 119

Query: 1474 QVSEPMLPQQNRTNSLQPGDVLALAKKAMMASRKALLLAEKSSILESEFGQ-------PP 1316
                       +   ++P D L LAKKA++AS++A  LA+   +  ++  +       P 
Sbjct: 120  -----------KNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPR 168

Query: 1315 FLSQEVVVKDETMVRSKRLLERQAKKRKVPKKPDNVVCEVSSATLADLNKKIDKGLNTDD 1136
             L+ ++ +++E  VRSKRLLERQ+K+R +P+ P  VV E S++  +D++KKI +G +T+D
Sbjct: 169  NLANKIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIHEGFDTND 227

Query: 1135 AFRLFLWGPETKQLLTVKEEKDLFLQIQELMRLEKVKQRLQLQFGREPTVAEWAEAVGMS 956
              RLFLWGPETKQLLT KEE +LF+ +QEL+RLE+VKQRLQ QF REPT+ EWAEAVGM+
Sbjct: 228  PLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMT 287

Query: 955  CQVLQSRLRSGNCSREKMIYANFRLVIHVAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKP 776
            CQ LQS L SGN SREK+IYANFRLV+HVAK Y  +GLN+QDLLQEGS GLMKSLEKFKP
Sbjct: 288  CQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKP 347

Query: 775  KAGCRFPTYAYWWIRQSIKKAIFQNSRTIRLPENVFALLKKITDARRSCIQQGHIPTNQE 596
            +AGCRF TYAYWWIRQ+I+KAIFQNSRTIRLPENV++LL ++  A++  IQ+GH PTN+E
Sbjct: 348  QAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEE 407

Query: 595  LAKRVGIRVTKLESLLLSSRNPLSIQERAWIDQDVTFQEITADPEVEIPDLIISKQMMRQ 416
            LAKRVGI V KLE L +S+R PLSIQ+  W DQD TFQEITAD EVE PDL ++KQ+MR+
Sbjct: 408  LAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRR 467

Query: 415  HVHRLLGVLNRRERQIIKFRYGIHDGEMHHDNERKSLSEIGAMYDLTKERVRQLESRALD 236
            HV  L+ +L  +ER+II+ RYGI       +NE KSL EIG+++ L+KERVRQLESRAL 
Sbjct: 468  HVRNLISILPPKERRIIRMRYGI------ENNEPKSLQEIGSIFGLSKERVRQLESRALH 521

Query: 235  KLKKCLSNQGLEAYINLLI 179
            KLK+CLS+QGL AY +LL+
Sbjct: 522  KLKQCLSSQGLGAYADLLV 540


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  574 bits (1480), Expect = e-161
 Identities = 305/545 (55%), Positives = 398/545 (73%), Gaps = 9/545 (1%)
 Frame = -1

Query: 1786 LPTTSMVRQFPPSVFPQEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKF 1613
            +PTTS+ R FP SV  QE + D + +L  ++E+   Q  LDRR +E  +   EE++  + 
Sbjct: 1    MPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQP 60

Query: 1612 NEYLKYFERRLLYQPGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTN 1433
            + Y + FER+LLY PGLWY   + Y G    L+M T+S A+ T              +  
Sbjct: 61   DRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTV-------------KNV 107

Query: 1432 SLQPGDVLALAKKAMMASRKALLLAEKSSILESEFGQ-------PPFLSQEVVVKDETMV 1274
             ++P D L LAKKA++AS++A  LA+   +  ++  +       P  L+ ++ +++E  V
Sbjct: 108  DVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKIPLREEVAV 167

Query: 1273 RSKRLLERQAKKRKVPKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQL 1094
            RSKRLLERQ+K+R +P+ P  VV E S++  +D++KKI +G +T+D  RLFLWGPETKQL
Sbjct: 168  RSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIHEGFDTNDPLRLFLWGPETKQL 226

Query: 1093 LTVKEEKDLFLQIQELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCS 914
            LT KEE +LF+ +QEL+RLE+VKQRLQ QF REPT+ EWAEAVGM+CQ LQS L SGN S
Sbjct: 227  LTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSS 286

Query: 913  REKMIYANFRLVIHVAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWI 734
            REK+IYANFRLV+HVAK Y  +GLN+QDLLQEGS GLMKSLEKFKP+AGCRF TYAYWWI
Sbjct: 287  REKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWI 346

Query: 733  RQSIKKAIFQNSRTIRLPENVFALLKKITDARRSCIQQGHIPTNQELAKRVGIRVTKLES 554
            RQ+I+KAIFQNSRTIRLPENV++LL ++  A++  IQ+GH PTN+ELAKRVGI V KLE 
Sbjct: 347  RQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLER 406

Query: 553  LLLSSRNPLSIQERAWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRER 374
            L +S+R PLSIQ+  W DQD TFQEITAD EVE PDL ++KQ+MR+HV  L+ +L  +ER
Sbjct: 407  LFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKER 466

Query: 373  QIIKFRYGIHDGEMHHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAY 194
            +II+ RYGI       +NE KSL EIG+++ L+KERVRQLESRAL KLK+CLS+QGL AY
Sbjct: 467  RIIRMRYGI------ENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAY 520

Query: 193  INLLI 179
             +LL+
Sbjct: 521  ADLLV 525


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  559 bits (1440), Expect = e-156
 Identities = 307/592 (51%), Positives = 414/592 (69%), Gaps = 9/592 (1%)
 Frame = -1

Query: 1927 SEMEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPS 1748
            S MEAG + LS TPS P  PRTH   +   S+SVLMLHDQ +  + S+PTT + R+FP S
Sbjct: 5    SSMEAGTNILSSTPSFP--PRTHFRNS---SSSVLMLHDQVAPAVASIPTT-IARKFPTS 58

Query: 1747 VFPQEPQHDNKTY--LMKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLY 1574
            V  QE + + + +   +K+E   Q TL++R +E  +S+ EE      N+Y+  FER+LL 
Sbjct: 59   VLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDH-NQYMVNFERQLLL 117

Query: 1573 QPGLWYPFTASYTGGNKYLAMST-ESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAK 1397
            QPGLWY   +S TG     + S  +S+ +D                +  ++P DVLALAK
Sbjct: 118  QPGLWYSLPSSQTGEKSPFSSSIMKSITTDIE-------------NSMDVKPCDVLALAK 164

Query: 1396 KAMMASRKALLLAEKSSILESEFGQPPF-----LSQEVVVKDETMVRSKRLLERQAKKRK 1232
            KA+ AS++A+ L E + +L ++    P      +S   +  +E  VRS RLLER++KKR+
Sbjct: 165  KALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR 224

Query: 1231 VPKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQ 1052
             PK     V E   +  A++ +KI++G +  D  RLFLWGPET++LLT KEE +L +QIQ
Sbjct: 225  NPKV---AVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQ 281

Query: 1051 ELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIH 872
            ELMRLE+VK+RLQ    REPTV EWAEAVG+SCQVLQS+L SGN SR+K+IYAN R+V+H
Sbjct: 282  ELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVH 341

Query: 871  VAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRT 692
            +AKQY  +GLN+QDLLQEGS GLM S+EKFKP AGCRF +YAYWWIRQ+++KAIFQ+SRT
Sbjct: 342  IAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRT 401

Query: 691  IRLPENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQE 515
            IRLPEN+++LL K+ +A+R  IQ+G H PT +E+A+RVGI + KL+ LLL +R PLS+Q+
Sbjct: 402  IRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQ 461

Query: 514  RAWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGE 335
              W DQD TFQE+TAD  +EIPD+ ++KQ+MRQHV  LL VL  +ER+II+ R+GI DG 
Sbjct: 462  PVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDG- 520

Query: 334  MHHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
                   ++LSEIG ++  +KERVRQLE RAL KLK+CLS+ GLE+Y +LL+
Sbjct: 521  -----IPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 567


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  557 bits (1436), Expect = e-155
 Identities = 306/590 (51%), Positives = 413/590 (70%), Gaps = 9/590 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVF 1742
            MEAG + LS TPS P  PRTH   +   S+SVLMLHDQ +  + S+PTT + R+FP SV 
Sbjct: 1    MEAGTNILSSTPSFP--PRTHFRNS---SSSVLMLHDQVAPAVASIPTT-IARKFPTSVL 54

Query: 1741 PQEPQHDNKTY--LMKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQP 1568
             QE + + + +   +K+E   Q TL++R +E  +S+ EE      N+Y+  FER+LL QP
Sbjct: 55   LQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDH-NQYMVNFERQLLLQP 113

Query: 1567 GLWYPFTASYTGGNKYLAMST-ESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKA 1391
            GLWY   +S TG     + S  +S+ +D                +  ++P DVLALAKKA
Sbjct: 114  GLWYSLPSSQTGEKSPFSSSIMKSITTDIE-------------NSMDVKPCDVLALAKKA 160

Query: 1390 MMASRKALLLAEKSSILESEFGQPPF-----LSQEVVVKDETMVRSKRLLERQAKKRKVP 1226
            + AS++A+ L E + +L ++    P      +S   +  +E  VRS RLLER++KKR+ P
Sbjct: 161  LSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNP 220

Query: 1225 KKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQEL 1046
            K     V E   +  A++ +KI++G +  D  RLFLWGPET++LLT KEE +L +QIQEL
Sbjct: 221  KV---AVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQEL 277

Query: 1045 MRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHVA 866
            MRLE+VK+RLQ    REPTV EWAEAVG+SCQVLQS+L SGN SR+K+IYAN R+V+H+A
Sbjct: 278  MRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIA 337

Query: 865  KQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTIR 686
            KQY  +GLN+QDLLQEGS GLM S+EKFKP AGCRF +YAYWWIRQ+++KAIFQ+SRTIR
Sbjct: 338  KQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIR 397

Query: 685  LPENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERA 509
            LPEN+++LL K+ +A+R  IQ+G H PT +E+A+RVGI + KL+ LLL +R PLS+Q+  
Sbjct: 398  LPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPV 457

Query: 508  WIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMH 329
            W DQD TFQE+TAD  +EIPD+ ++KQ+MRQHV  LL VL  +ER+II+ R+GI DG   
Sbjct: 458  WADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDG--- 514

Query: 328  HDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
                 ++LSEIG ++  +KERVRQLE RAL KLK+CLS+ GLE+Y +LL+
Sbjct: 515  ---IPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Phoenix dactylifera]
          Length = 466

 Score =  555 bits (1429), Expect = e-155
 Identities = 289/430 (67%), Positives = 343/430 (79%), Gaps = 7/430 (1%)
 Frame = -1

Query: 1447 QNRTNSLQPGDVLALAKKAMMASRKALLLAEKSSILESEFGQPPFL-------SQEVVVK 1289
            +N  + ++P DVLALAK+AM ASRKA  L E+S+IL +EF +  FL       + ++ +K
Sbjct: 43   ENCADFVRPADVLALAKRAMRASRKAASLMEESNILAAEFDESHFLGLNHRGSTMDISIK 102

Query: 1288 DETMVRSKRLLERQAKKRKVPKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGP 1109
            +E  VRSKRLLER++KKRKV K   NV CEVS +    +NKKIDKGL+ +D  RLFLWGP
Sbjct: 103  EEVAVRSKRLLERRSKKRKVGKNSKNVACEVSKSMTTGMNKKIDKGLDPNDPLRLFLWGP 162

Query: 1108 ETKQLLTVKEEKDLFLQIQELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLR 929
            ETKQLLTVKEEKDLF+QIQ+LMRLE+V+QRL+LQF REPT++EWA+AVGMSCQ LQ  L 
Sbjct: 163  ETKQLLTVKEEKDLFVQIQDLMRLEEVQQRLRLQFDREPTLSEWAQAVGMSCQALQCCLS 222

Query: 928  SGNCSREKMIYANFRLVIHVAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTY 749
            SG  SREKMI AN RLV+HVAKQY+ KGLNI DLLQEGSRGLMKSLEKFKPK GCRF TY
Sbjct: 223  SGKRSREKMINANLRLVVHVAKQYEGKGLNILDLLQEGSRGLMKSLEKFKPKVGCRFSTY 282

Query: 748  AYWWIRQSIKKAIFQNSRTIRLPENVFALLKKITDARRSCIQQGHIPTNQELAKRVGIRV 569
            AYWWIRQSI+KAIF NSR IRLPENVF LLK I  ARR  IQ+GH PTN+E+AK+VGI V
Sbjct: 283  AYWWIRQSIRKAIFLNSRVIRLPENVFGLLKSIKKARRLFIQEGHAPTNEEIAKQVGISV 342

Query: 568  TKLESLLLSSRNPLSIQERAWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVL 389
             +L+ LLL++RNP+SIQE AW DQDVTFQEIT DPEVE PDL ++KQMMRQHV  LL +L
Sbjct: 343  ERLKVLLLTTRNPISIQECAWTDQDVTFQEITGDPEVETPDLSMAKQMMRQHVRGLLRIL 402

Query: 388  NRRERQIIKFRYGIHDGEMHHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQ 209
              RERQII++R+GI       +N+ KSL+EIG M+ L+KERVRQLESRALDKLK C  + 
Sbjct: 403  KPRERQIIQYRFGI------PNNKPKSLTEIGVMFGLSKERVRQLESRALDKLKDCRLSH 456

Query: 208  GLEAYINLLI 179
            GL AY+ LL+
Sbjct: 457  GLGAYLELLL 466


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  554 bits (1428), Expect = e-155
 Identities = 305/590 (51%), Positives = 401/590 (67%), Gaps = 9/590 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPR----NHLLSTSVLMLHDQASRTITSLPTTSMVRQFP 1754
            ME GR FLS + + P+     HP     +   STSVLMLH+QA+  +TS+P T + R FP
Sbjct: 1    MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSTSVLMLHEQATPAVTSVPITFVARHFP 60

Query: 1753 PSVFPQEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRL 1580
             SV  QE + + K  L  +KEE   Q TLDR  +EA  S  E+ +   F + +K  E +L
Sbjct: 61   TSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIEARASLNEDLKIDGFYQLVKDSEHQL 120

Query: 1579 LYQPGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALA 1400
            L + GL   F++  T                ++     EP+    ++   ++P D +ALA
Sbjct: 121  LNRSGLLDVFSSLQT-------------RVKSSALLTMEPITTASSKHMDIKPSDAVALA 167

Query: 1399 KKAMMASRKALLLAEKSSILESEFGQPPFLSQEVVVKDETMVRSKRLLERQAK--KRKVP 1226
            KKA+ AS++A+  AE S  +              +V+DE  VRS RLLER+ +  K+K  
Sbjct: 168  KKALSASKEAVSFAEDSKSMGDXLMTVSEGLDNWLVEDEKTVRSARLLERRRRRLKKKRV 227

Query: 1225 KKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQEL 1046
             K   ++ E +  T +D+ KKI++GLN +D  RLFLWGPETKQLLT KEE +L  Q+Q+L
Sbjct: 228  SKSKVLIHETNGPTSSDVRKKINEGLNPNDPLRLFLWGPETKQLLTAKEEAELIAQVQDL 287

Query: 1045 MRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHVA 866
             +LE+VK RLQ QFGREPT+ EWAEAVG+SCQ+L+S+LRSG  SREK+IYAN R+V+H+A
Sbjct: 288  FKLEEVKSRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIA 347

Query: 865  KQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTIR 686
            KQY  +GL +QDL+QEGS GLMKS+EKFKP+AGCRF TYAYWWIRQ+++KAIFQ+SRTIR
Sbjct: 348  KQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIR 407

Query: 685  LPENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERA 509
            LPENV+ LL K+ +A++SCIQ+G H P  +ELA+RVGI V KL+ LL S+R PLS+Q+  
Sbjct: 408  LPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPV 467

Query: 508  WIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMH 329
            W DQD TFQEITAD   EIP + + KQ+MRQHV  LLG+LN RERQII+ R+GI DG   
Sbjct: 468  WADQDTTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDG--- 524

Query: 328  HDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
               +++SLSEIG M+ L+KERVRQLESRA  KLK+ L +QGL AY  LL+
Sbjct: 525  ---KQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLGAYGPLLV 571


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  553 bits (1425), Expect = e-154
 Identities = 305/593 (51%), Positives = 409/593 (68%), Gaps = 12/593 (2%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPR-NHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSV 1745
            MEAGR FLS + + P+     HP  +   STSVLMLH+QA   +TS+P TS+ R FP SV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1744 FPQEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQ 1571
              QE + + K  L  +KE+   + TLDR  +E G S  E+ +   F   +   + +LL  
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEATLDRMQIETGASVHEDLDIDDFYPLVNGSKPQLL-N 119

Query: 1570 PGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKA 1391
            P +   F++  TG      ++ ES+ + +N             +   ++P +V+ALAKKA
Sbjct: 120  PDILDVFSSLQTGAKPSTPVTLESLTTASN-------------KHMDVEPCNVVALAKKA 166

Query: 1390 MMASRKALLLAEKSSILESEFGQPPFLS------QEVVVKDETMVRSKRLLERQAKKRKV 1229
            + ASR+A  LAE S  + ++F +   L          +V++E  VRS R+LER+ K+ K 
Sbjct: 167  LSASREAASLAEDSQSMGADFDESLSLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKT 226

Query: 1228 PKKPDNVVC--EVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQI 1055
             K P + +   E +S T +D+ KKI +G N +D  RLFLWGPET+QLLT KEE +L  ++
Sbjct: 227  RKVPKSKLIGHESNSFTSSDVPKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARV 286

Query: 1054 QELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVI 875
            Q+L +LE+VK RLQ QFGREPT+ EWAEAVG+SCQ+L+S+LRSG  SREK+IYAN R+V+
Sbjct: 287  QDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVV 346

Query: 874  HVAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSR 695
            H+AKQY  +GL +QDL+QEGS GLMKS+EKFKP+AGCRF TYAYWWIRQ+++KAIFQ+SR
Sbjct: 347  HIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSR 406

Query: 694  TIRLPENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQ 518
            TIRLPENV++LL K+ +A++SCIQ+G H P  +ELA RVGI V KLE LL ++R PLS+Q
Sbjct: 407  TIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQ 466

Query: 517  ERAWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDG 338
            +  W DQD TFQE+TAD  VEIPD+ ++KQ+MRQHV  LL +LN RERQII+ RYGI DG
Sbjct: 467  QPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDG 526

Query: 337  EMHHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
                  +++SLSEIG M+ L+KERVRQLESRA  KL++ L +QGL AY  LL+
Sbjct: 527  ------KQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 573


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  552 bits (1423), Expect = e-154
 Identities = 304/588 (51%), Positives = 408/588 (69%), Gaps = 7/588 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPR-NHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSV 1745
            MEAGR FLS + + P+     HP  +   STSVLMLH+QA   +TS+P TS+ R FP SV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1744 FPQEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQ 1571
              QE + + K  L  +KE+   +  LDR  +E G S  E+ +   F   +   + +LL  
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNH 120

Query: 1570 PGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKA 1391
              L   F++  TG      ++ ES+ + +N             +   ++P +V+ALAKKA
Sbjct: 121  DILDV-FSSLQTGAKPSTPLTLESLTTASN-------------KHMDVEPCNVVALAKKA 166

Query: 1390 MMASRKALLLAEKSSILESEFGQPPFLS-QEVVVKDETMVRSKRLLERQAKKRKVPKKPD 1214
            + ASR+A  LAE S  + ++F    + S    +V++E  VRS R+LER+ K+ K  K P 
Sbjct: 167  LSASREAASLAEDSQSMGADFDDLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPK 226

Query: 1213 NVVC--EVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQELMR 1040
            + V   E +S T +D+ KKI +G N +D  RLFLWGPET+QLLT KEE +L  ++Q+L +
Sbjct: 227  SKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFK 286

Query: 1039 LEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHVAKQ 860
            LE+VK RLQ QFGREPT+ EWAEAVG+SCQ+L+S+LRSG  SREK+IYAN R+V+H+AKQ
Sbjct: 287  LEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQ 346

Query: 859  YDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTIRLP 680
            Y  +GL +QDL+QEGS GLMKS+EKFKP+AGCRF TYAYWWIRQ+++KAIFQ+SRTIRLP
Sbjct: 347  YQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLP 406

Query: 679  ENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERAWI 503
            ENV++LL K+ +A++SCIQ+G H P  +ELA+RVGI V KLE LL ++R PLS+Q+  W 
Sbjct: 407  ENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWA 466

Query: 502  DQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMHHD 323
            DQD TFQE+TAD  VEIPD+ ++KQ+MRQHV  LL +LN RER+II+ RYGI DG     
Sbjct: 467  DQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDG----- 521

Query: 322  NERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
             +++SLSEIG M+ L+KERVRQLESRA  KL++ L +QGL AY  LL+
Sbjct: 522  -KQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  548 bits (1412), Expect = e-153
 Identities = 301/592 (50%), Positives = 403/592 (68%), Gaps = 11/592 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHP-----RNHLLSTSVLMLHDQASRTITSLPTTSMVRQF 1757
            ME GR FLS + + P+     HP      +   STSVLMLH+QA+  + S+P T + R F
Sbjct: 1    MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSSTSVLMLHEQATAAVPSVPITFVARHF 60

Query: 1756 PPSVFPQEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERR 1583
            P SV  QE + + K  L  +KEE   Q TLDR  +E   S  E+ +   F + +K  E +
Sbjct: 61   PTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIETKASLNEDLDIDGFYQLVKDSEHQ 120

Query: 1582 LLYQPGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLAL 1403
            LL + GL   F++  TG      ++ E             P+    ++   ++P D +AL
Sbjct: 121  LLNRSGLLDVFSSLQTGVKLSAPLTVE-------------PITTASSKHMDIKPSDAVAL 167

Query: 1402 AKKAMMASRKALLLAEKSSILESEFGQPPFLSQEV-VVKDETMVRSKRLLERQAK--KRK 1232
            AKKA+ AS++A+  A+ S  +  +F     +  +  +V+DE  VRS RLLER+ K  K+K
Sbjct: 168  AKKALSASKEAVSFADGSKSMGYDFDDSLSIGLDNWLVEDEKTVRSTRLLERRRKRLKKK 227

Query: 1231 VPKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQ 1052
               K   ++ E +S   +D+ +KI++G N +D  RLFLWGPETKQLLT +EE +L  ++Q
Sbjct: 228  RVSKSKVLIHETNSPPSSDVRRKINEGFNQNDPLRLFLWGPETKQLLTAEEEAELIARVQ 287

Query: 1051 ELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIH 872
            +L +LE+VK RLQ QFGREPT+ EWAEAVG+SCQ+L+S+LRSG  SREK+IYAN R+V+H
Sbjct: 288  DLFKLEEVKNRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVH 347

Query: 871  VAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRT 692
            +AKQY  +GL +QDL+QEGS GLMKS+EKFKP+AGCRF TYAYWWIRQ+++KAIFQ+SRT
Sbjct: 348  IAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRT 407

Query: 691  IRLPENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQE 515
            IRLPENV+ LL K+ +A++SCIQ+G H P  +ELA+RVGI V KL+ LL S+R PLS+Q+
Sbjct: 408  IRLPENVYTLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQ 467

Query: 514  RAWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGE 335
              W DQD TFQEITAD   EIP + + KQ+MRQHV  LLG+LN RERQII+ R+GI DG 
Sbjct: 468  PVWADQDSTFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDG- 526

Query: 334  MHHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
                 +++SLSEIG M+ L+KERVRQLESRA  KLK+ L +QGL AY  LL+
Sbjct: 527  -----KQRSLSEIGNMFGLSKERVRQLESRAFLKLKQSLGSQGLGAYGPLLV 573


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  539 bits (1388), Expect = e-150
 Identities = 291/583 (49%), Positives = 404/583 (69%), Gaps = 3/583 (0%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVF 1742
            MEAGR+ LS +PS P   RTH   +  L +SVL+L +QA+  +T++PTTS  + FP SV 
Sbjct: 1    MEAGRTLLSSSPSFPT--RTHLKNS--LCSSVLILREQATPAVTAIPTTSTAQHFPTSVL 56

Query: 1741 PQEPQHDNKTY--LMKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQP 1568
             QE + + +    + KE+   Q TLDRR  E G S  E ++  + ++ ++ FE +L + P
Sbjct: 57   LQEQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWP 116

Query: 1567 GLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKAM 1388
              W     S  G N  ++ +T+SV   T+             +   ++P DV+ LAK+A+
Sbjct: 117  TYWNLLPPSQKGQNPSMSFTTQSVTRSTD-------------KLIDVEPTDVINLAKRAL 163

Query: 1387 MASRKALLLAEKSSILESEFGQPPFLSQEVVVKDETMVRSKRLLERQAKKRKVPKKPDNV 1208
             AS+ A  LA+ S+ L++        S    +++  +VRS+R L RQ+  R+VPK  D +
Sbjct: 164  SASKHAAFLADNSTDLDNLASTS---SSSFSLEEVRIVRSRRHLARQSLNRRVPKTKD-M 219

Query: 1207 VCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQELMRLEKV 1028
            + E   +  AD+ K++ +G + +D  RLFLWGPETKQLLT KEE +L  QIQ+LM LE V
Sbjct: 220  IFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGV 279

Query: 1027 KQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHVAKQYDRK 848
            K RL+ QFGREPT+ EWA+AVG+SC VL+ +L SGN SREK+I AN R+V+H+AK+Y  +
Sbjct: 280  KNRLESQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNR 339

Query: 847  GLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTIRLPENVF 668
            GL +QDLLQEG+ GLMKS+EKFKP+AGCRF TYAYWWIRQ+I KAIFQ+SRTIRLPENV+
Sbjct: 340  GLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVY 399

Query: 667  ALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERAWIDQDV 491
             LL K+ +A+RS IQ+G H PT +E+A+RVGI + KLE LL  +R PLS+Q+  W DQ+ 
Sbjct: 400  GLLGKVMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNT 459

Query: 490  TFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMHHDNERK 311
            TFQEITAD E+EIPD+ ++KQ+MR+H+  LL +L+ +ER+II+ R+GI DG      ++K
Sbjct: 460  TFQEITADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDG------KQK 513

Query: 310  SLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLL 182
            SLSEIG ++ L+KERVRQLESRAL KLK+C+ + GL+AY +LL
Sbjct: 514  SLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 556


>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Pyrus x bretschneideri]
          Length = 610

 Score =  533 bits (1372), Expect = e-148
 Identities = 289/560 (51%), Positives = 388/560 (69%), Gaps = 6/560 (1%)
 Frame = -1

Query: 1840 LSTSVLMLHDQASRTITSLPTTSMVRQFPPSVFPQEPQHDNKTYL--MKEENLIQTTLDR 1667
            L+  VLMLH+QA+  + S+P T + R FP SV  QE + + K  L  +KEE   Q TLDR
Sbjct: 70   LACIVLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLDR 129

Query: 1666 RHVEAGLSSCEEREKQKFNEYLKYFERRLLYQPGLWYPFTASYTGGNKYLAMSTESVASD 1487
              +E   S  E+ +   F + +K  E +LL + GL   F++  TG      ++ E     
Sbjct: 130  MQIETKASLNEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKLSAPLTVE----- 184

Query: 1486 TNVAQVSEPMLPQQNRTNSLQPGDVLALAKKAMMASRKALLLAEKSSILESEFGQPPFLS 1307
                    P+    ++   ++P D +ALAKKA+ AS++A+  A+ S  +  +F     + 
Sbjct: 185  --------PITTASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSIG 236

Query: 1306 QEV-VVKDETMVRSKRLLERQAK--KRKVPKKPDNVVCEVSSATLADLNKKIDKGLNTDD 1136
             +  +V+DE  VRS RLLER+ K  K+K   K   ++ E +S   +D+ +KI++G N +D
Sbjct: 237  LDNWLVEDEKTVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKINEGFNQND 296

Query: 1135 AFRLFLWGPETKQLLTVKEEKDLFLQIQELMRLEKVKQRLQLQFGREPTVAEWAEAVGMS 956
              RLFLWGPETKQLLT +EE +L  ++Q+L +LE+VK RLQ QFGREPT+ EWAEAVG+S
Sbjct: 297  PLRLFLWGPETKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLVEWAEAVGIS 356

Query: 955  CQVLQSRLRSGNCSREKMIYANFRLVIHVAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKP 776
            CQ+L+S+LRSG  SREK+IYAN R+V+H+AKQY  +GL +QDL+QEGS GLMKS+EKFKP
Sbjct: 357  CQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKP 416

Query: 775  KAGCRFPTYAYWWIRQSIKKAIFQNSRTIRLPENVFALLKKITDARRSCIQQG-HIPTNQ 599
            +AGCRF TYAYWWIRQ+++KAIFQ+SRTIRLPENV+ LL K+ +A++SCIQ+G H P  +
Sbjct: 417  QAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHNPNKE 476

Query: 598  ELAKRVGIRVTKLESLLLSSRNPLSIQERAWIDQDVTFQEITADPEVEIPDLIISKQMMR 419
            ELA+RVGI V KL+ LL S+R PLS+Q+  W DQD TFQEITAD   EIP + + KQ+MR
Sbjct: 477  ELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPHVSVEKQLMR 536

Query: 418  QHVHRLLGVLNRRERQIIKFRYGIHDGEMHHDNERKSLSEIGAMYDLTKERVRQLESRAL 239
            QHV  LLG+LN RERQII+ R+GI DG      +++SLSEIG M+ L+KERVRQLESRA 
Sbjct: 537  QHVRHLLGILNLRERQIIRLRFGIEDG------KQRSLSEIGNMFGLSKERVRQLESRAF 590

Query: 238  DKLKKCLSNQGLEAYINLLI 179
             KLK+ L +QGL AY  LL+
Sbjct: 591  LKLKQSLGSQGLGAYGPLLV 610


>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] gi|743810385|ref|XP_011018729.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X1 [Populus euphratica]
            gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica]
          Length = 570

 Score =  530 bits (1364), Expect = e-147
 Identities = 291/596 (48%), Positives = 404/596 (67%), Gaps = 16/596 (2%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVF 1742
            MEAGR+ LS +PS P   RTH   +  L +SVL+L +QA+  +T++PTTS  + FP SV 
Sbjct: 1    MEAGRTLLSSSPSFPT--RTHLKNS--LCSSVLILREQATPAVTAIPTTSTAQHFPTSVL 56

Query: 1741 PQEPQHDNKTY--LMKEENLIQTTLDRRHVEAGLSSCEEREKQKF-------------NE 1607
             QE + + +    + KE+   Q TLDRR  E G S  E ++  +              ++
Sbjct: 57   LQEQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDEIGTSGHEGKDSDELDQ 116

Query: 1606 YLKYFERRLLYQPGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSL 1427
             ++ FE +L + P  W     S  G N  ++ +T+SV   T+             +   +
Sbjct: 117  MVENFEYQLHHWPTYWNLLPPSQKGQNPSMSFTTQSVTRSTD-------------KLIDV 163

Query: 1426 QPGDVLALAKKAMMASRKALLLAEKSSILESEFGQPPFLSQEVVVKDETMVRSKRLLERQ 1247
            +P DV+ LAK+A+ AS+ A  LA+ S+ L++        S    +++  +VRS+R L RQ
Sbjct: 164  EPTDVINLAKRALSASKHAAFLADNSTDLDNLASTS---SSSFSLEEVRIVRSRRHLARQ 220

Query: 1246 AKKRKVPKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDL 1067
            +  R+VPK  D ++ E   +  AD+ K++ +G + +D  RLFLWGPETKQLLT KEE +L
Sbjct: 221  SLNRRVPKTKD-MIFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFEL 279

Query: 1066 FLQIQELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANF 887
              QIQ+LM LE VK RL+ QFGREPT+ EWA+AVG+SC VL+ +L SGN SREK+I AN 
Sbjct: 280  IAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANL 339

Query: 886  RLVIHVAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIF 707
            R+V+H+AK+Y  +GL +QDLLQEG+ GLMKS+EKFKP+AGCRF TYAYWWIRQ+I KAIF
Sbjct: 340  RMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIF 399

Query: 706  QNSRTIRLPENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNP 530
            Q+SRTIRLPENV+ LL K+ +A+RS IQ+G H PT +E+A+RVGI + KLE LL  +R P
Sbjct: 400  QHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTP 459

Query: 529  LSIQERAWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYG 350
            LS+Q+  W DQ+ TFQEITAD E+EIPD+ ++KQ+MR+H+  LL +L+ +ER+II+ R+G
Sbjct: 460  LSMQQTVWSDQNTTFQEITADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFG 519

Query: 349  IHDGEMHHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLL 182
            I DG      ++KSLSEIG ++ L+KERVRQLESRAL KLK+C+ + GL+AY +LL
Sbjct: 520  IEDG------KQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 569


>gb|KDP29141.1| hypothetical protein JCGZ_16530 [Jatropha curcas]
          Length = 560

 Score =  529 bits (1362), Expect = e-147
 Identities = 301/593 (50%), Positives = 400/593 (67%), Gaps = 12/593 (2%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNL-PRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSV 1745
            MEAGR+ LS   SPP+  PRTH   +  LS SVLMLH+QA+  + S PTT+  R FP S+
Sbjct: 1    MEAGRNLLS---SPPSFTPRTHLKNS--LSPSVLMLHEQAAPMVISAPTTARARNFPTSI 55

Query: 1744 FPQEPQHDNKTY--LMKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQ 1571
              QE + + K    + KE+ + Q TLDRR +E G S  E       N+ +   E   +  
Sbjct: 56   ILQEQRDEFKPLPAIFKEDRISQATLDRRQMEIGSSVLEGDGSDDLNQLVLDSECHSIRW 115

Query: 1570 PGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKA 1391
            P      +A  T  +  L+++ +S+A +T+   V             +QP +V+ LAKKA
Sbjct: 116  PNFSNLVSALQTAESPSLSVTMQSLAKETDKLMV-------------VQPTNVVDLAKKA 162

Query: 1390 MMASRKALLLAEK--------SSILESEFGQPPFLSQEVVVKDETMVRSKRLLERQAKKR 1235
            + AS++A  LAEK        S+ +ES     PF      VK    VRS R LERQ+K R
Sbjct: 163  LSASKQAAELAEKLTNHDGKTSTSVEST---SPFNFSFEEVKT---VRSTRRLERQSKNR 216

Query: 1234 KVPKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQI 1055
            ++PK     V    ++   DL KK+++G + +D  RLFLWGPETKQLLT  EE +L  Q+
Sbjct: 217  RMPKAK---VLFHHNSRKQDLQKKLNEGFDLNDPLRLFLWGPETKQLLTASEESELIAQV 273

Query: 1054 QELMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVI 875
            Q+LMRLE+VK+RLQ QFGREPT  EWA+A+G+S  VLQS+L+SG  SR+K+I AN R+V+
Sbjct: 274  QDLMRLEEVKKRLQFQFGREPTFVEWADAIGLSYPVLQSQLQSGTISRKKLITANLRMVV 333

Query: 874  HVAKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSR 695
            H+AKQY  +GL++QDL+QEGS GLMKS+EKFKP+ GCRF TYAYWWIRQ+I+KAIFQ+SR
Sbjct: 334  HIAKQYQHRGLSLQDLMQEGSMGLMKSVEKFKPQVGCRFATYAYWWIRQTIRKAIFQHSR 393

Query: 694  TIRLPENVFALLKKITDARRSCIQQGHI-PTNQELAKRVGIRVTKLESLLLSSRNPLSIQ 518
            TIRLPENV+ +L K+ +++R  IQ+G++ PT +ELA R GI V +LE+L+  +R PLS+Q
Sbjct: 394  TIRLPENVYVILGKVMESKRLYIQEGNLNPTKEELANRTGITVERLETLIFMARRPLSMQ 453

Query: 517  ERAWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDG 338
            +  W DQD   QEITAD E+EIPD+ ++KQ+MRQHVH LL VLN+RERQIIK R+G  DG
Sbjct: 454  QPVWADQDTILQEITADTEIEIPDVSVAKQLMRQHVHGLLNVLNQRERQIIKLRFGFEDG 513

Query: 337  EMHHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
                  ++ SLSEIG ++ L+KERVRQLESRAL KLK+C  N GLEAY +LL+
Sbjct: 514  ------KQMSLSEIGNVFGLSKERVRQLESRALHKLKQCHGNHGLEAYADLLV 560


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
          Length = 572

 Score =  526 bits (1356), Expect = e-146
 Identities = 288/588 (48%), Positives = 403/588 (68%), Gaps = 10/588 (1%)
 Frame = -1

Query: 1915 AGRSFLSPTPSP-PNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVFP 1739
            AGR+ LS  P+   +  +        +S+SVLML++  +  +TS+P   +VR  P SV  
Sbjct: 4    AGRNLLSSPPTTFSHKTQLSRSSPSSISSSVLMLYEHVAPALTSVPHAYLVRHVPASVIN 63

Query: 1738 QEPQHDNKTYL--MKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLYQPG 1565
             E Q +N+  L  +KEE     T+DRR VEA  S+ EE +     + +   + +LL  PG
Sbjct: 64   PEQQFENRLQLHSVKEEKTSLATIDRRLVEAASSAMEENDAVDSEQNINALQVQLLRSPG 123

Query: 1564 LWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKKAMM 1385
            L Y F++ +      L + TES++              +  +  + +P +V+ALA+KA++
Sbjct: 124  LSYLFSSYHLKEKVPLTLDTESLSD-------------KGEKLMNFEPHNVVALARKALL 170

Query: 1384 ASRKALLLAEKSSILESEFGQ---PPFLSQEVV---VKDETMVRSKRLLERQAKKRKVPK 1223
            ASR+A LLAE S +L + F     P  LS  +    +KD+ + RS RLLER++KKR  P 
Sbjct: 171  ASREAALLAEDSKLLGTNFDDSIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPT 230

Query: 1222 KPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQELM 1043
                V  E + +   D+ +++++ ++ +D  R+FLWGPET+QLLTVKEE +L ++IQ  M
Sbjct: 231  SKHQVQ-ETNRSERPDVRRRVNESIDLNDPLRMFLWGPETRQLLTVKEESELIVKIQNTM 289

Query: 1042 RLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHVAK 863
            +L++VK RLQ QF REPT+ EWAEA G++ + LQS+LRSG  SR+K+I AN R+V+H+AK
Sbjct: 290  KLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAK 349

Query: 862  QYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTIRL 683
            QY  +GL++QDLLQEGS GLMKS+EKFKP+AGCRFPTYAYWWIRQ ++KAIFQ+SRTIRL
Sbjct: 350  QYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRL 409

Query: 682  PENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQERAW 506
            PENV+ALL K+ DA++ CIQQG H PT +++A   G+ V +L+SLL ++R PLS+Q+  W
Sbjct: 410  PENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVW 469

Query: 505  IDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEMHH 326
             DQD TFQEITAD  +E P+L +SKQ+MR+HV  LL VL+ +ER+II+ R+GI DG    
Sbjct: 470  TDQDATFQEITADNAIEAPELSVSKQLMRRHVRNLLNVLSPKERKIIRLRFGIGDG---- 525

Query: 325  DNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLL 182
              ERKSLSEIGA++ L+KERVRQLESRAL +LK+ LS+ GL+AY +LL
Sbjct: 526  --ERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGLDAYNDLL 571


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  524 bits (1350), Expect = e-145
 Identities = 284/591 (48%), Positives = 389/591 (65%), Gaps = 10/591 (1%)
 Frame = -1

Query: 1921 MEAGRSFLSPTPSPPNLPRTHHPRNHLLSTSVLMLHDQASRTITSLPTTSMVRQFPPSVF 1742
            MEA R+ LSP P+     +         S+SVLM H+QA+   TS+P TS+ R FP SV 
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 1741 PQEPQHDNKT----YLMKEENLIQTTLDRRHVEAGLSSCEEREKQKFNEYLKYFERRLLY 1574
             QE + D +     +  KE+       D++ +E G S  EE     F +    FE++LL 
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKKLLQ 118

Query: 1573 QPGLWYPFTASYTGGNKYLAMSTESVASDTNVAQVSEPMLPQQNRTNSLQPGDVLALAKK 1394
             P L    +   +  N     + +SVA+DT                  ++P +++ALAKK
Sbjct: 119  WPDLTQLLSLLESEENPSSTSNMQSVAADTK-------------EIVDVEPSNIVALAKK 165

Query: 1393 AMMASRKALLLAEKSSI-----LESEFGQPPFLSQEVVVKDETMVRSKRLLERQAKKRKV 1229
            A+ AS++A  L+E   +     L +  G     +  V  ++   VRS R LERQ+K+R+V
Sbjct: 166  ALSASKQAASLSEDLKLDLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRV 225

Query: 1228 PKKPDNVVCEVSSATLADLNKKIDKGLNTDDAFRLFLWGPETKQLLTVKEEKDLFLQIQE 1049
              +P   + E  S+   D+ +K+ +G + +D  RLFLWGPETKQLLT KEE +L  Q+Q 
Sbjct: 226  --QPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQN 283

Query: 1048 LMRLEKVKQRLQLQFGREPTVAEWAEAVGMSCQVLQSRLRSGNCSREKMIYANFRLVIHV 869
            LMRLEKVK +LQ QFGREPT+ EWAEA+G+ C  LQ+ L SGN SR+K+IYAN R+V+H+
Sbjct: 284  LMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHI 343

Query: 868  AKQYDRKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIKKAIFQNSRTI 689
            AKQY  +GL++QDLLQEGS GLMKS+E+FKP+ GCRF TYAYWWIRQ+I+K+I Q+SRT+
Sbjct: 344  AKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTV 403

Query: 688  RLPENVFALLKKITDARRSCIQQG-HIPTNQELAKRVGIRVTKLESLLLSSRNPLSIQER 512
            RLPENV  LL K+ DA++S I++G H P+ +ELA+RVGI V KL+ LL ++R PLS+Q+ 
Sbjct: 404  RLPENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQS 463

Query: 511  AWIDQDVTFQEITADPEVEIPDLIISKQMMRQHVHRLLGVLNRRERQIIKFRYGIHDGEM 332
             W+DQD+TFQE+T D  +EIPD+ ++KQ+MRQHV  LL VL+ RER IIK R+GI     
Sbjct: 464  VWVDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGI----- 518

Query: 331  HHDNERKSLSEIGAMYDLTKERVRQLESRALDKLKKCLSNQGLEAYINLLI 179
              +++  SLSEIG M+ L+KERVRQLESRAL KLK+CL+  GL AY++LL+
Sbjct: 519  -EESKENSLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568