BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00014864
         (1953 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010913927.1| PREDICTED: RNA polymerase sigma factor sigE,...   514   e-142
ref|XP_008810822.1| PREDICTED: RNA polymerase sigma factor sigE,...   504   e-140
ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   503   e-139
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   498   e-138
ref|XP_009410848.1| PREDICTED: RNA polymerase sigma factor sigE,...   487   e-134
ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,...   475   e-131
ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplas...   473   e-130
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     470   e-129
gb|AKC88745.1| sigma factor [Melianthus villosus]                     465   e-128
ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,...   465   e-128
ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,...   463   e-127
ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,...   463   e-127
ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,...   463   e-127
ref|XP_010523561.1| PREDICTED: RNA polymerase sigma factor sigE,...   462   e-127
gb|KHN44232.1| RNA polymerase sigma factor rpoD [Glycine soja]        459   e-126
ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,...   457   e-125
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   455   e-125
ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,...   454   e-125
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   454   e-125
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   452   e-124

>ref|XP_010913927.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Elaeis guineensis]
            gi|743755895|ref|XP_010913935.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Elaeis guineensis] gi|743755897|ref|XP_010913942.1|
            PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Elaeis guineensis]
          Length = 498

 Score =  514 bits (1323), Expect = e-142
 Identities = 296/491 (60%), Positives = 330/491 (67%), Gaps = 15/491 (3%)
 Frame = -3

Query: 1738 FLSRRSNPIGRPVSIVAFKTDQT-KCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHK 1562
            F +RRS    RP   +AF+TD+  KCSA A +S+        P + +    D+  + +  
Sbjct: 21   FSARRSPAFRRPFFCLAFRTDRAAKCSAAAVSSEAVKPPQKPPKRAQATSVDAAPTATQ- 79

Query: 1561 RQQPKRVKPDADLDYNEVAAALENIYKLSPP--ADVAEKFDRKRKEL------------D 1424
                       DLDYNEVAAALENIYKLSP   +DV E   R R+              +
Sbjct: 80   -----------DLDYNEVAAALENIYKLSPAEVSDVEETDQRGRRRRGRSRKRAKEGDGE 128

Query: 1423 IGXXXXXXXXXXXXXXXXXXXVAMRRKQGDGEIRGGXXXXXXXXXXXXXXXXEYSLSTSD 1244
             G                      RRK  + E+                   EYS+ST D
Sbjct: 129  EGNVVRNRKRRVRRLSLEKRIALRRRKDEEVEMVAARDERRDLDEDVGKLLREYSVST-D 187

Query: 1243 FVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMT 1064
              SLDWKKMKIPPVL S+E  WLF+LMQPMKAIFEVK NL+KDLN+EPT+ ELA AVNMT
Sbjct: 188  LASLDWKKMKIPPVLSSAEHNWLFELMQPMKAIFEVKHNLNKDLNREPTDAELAAAVNMT 247

Query: 1063 VSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDR 884
            V QLRRHIEVG+AARNKLIKHNLRLVLFVINKYY E+ASG  FQDLCQAGVKGLITAIDR
Sbjct: 248  VPQLRRHIEVGRAARNKLIKHNLRLVLFVINKYYPEIASGQKFQDLCQAGVKGLITAIDR 307

Query: 883  FEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPT 704
            FE KRGFRLSTYGLFWIRHSI RSMT SSFTRVPFGIESVRQEIQKAKLEL  EL R+P 
Sbjct: 308  FEAKRGFRLSTYGLFWIRHSIIRSMTISSFTRVPFGIESVRQEIQKAKLELQFELGRVPK 367

Query: 703  EEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXX 524
            +EEII RV ISPERY+DVMKA+K ++SL++RH VTQEEF            DK RQ    
Sbjct: 368  DEEIIDRVKISPERYYDVMKAAKPIFSLHARHAVTQEEFINGITDIDGVGGDKRRQRALL 427

Query: 523  XXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKH 344
                      LKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKA MKLKH
Sbjct: 428  RLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKAFMKLKH 487

Query: 343  PARLDYLRRYI 311
            PAR+DYLRRY+
Sbjct: 488  PARVDYLRRYV 498


>ref|XP_008810822.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Phoenix dactylifera]
          Length = 498

 Score =  504 bits (1299), Expect = e-140
 Identities = 296/489 (60%), Positives = 327/489 (66%), Gaps = 15/489 (3%)
 Frame = -3

Query: 1732 SRRSNPIGRPVSIVAFKTDQT-KCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQ 1556
            +RR     RP   +AF+ D T KCSA A  S+            + P+K S ++ +    
Sbjct: 23   ARRLPAPRRPFLCLAFRADWTAKCSAAAIPSEAV----------KPPQKSSKRAQAASVD 72

Query: 1555 QPKRVKPDADLDYNEVAAALENIYKLSPP--ADVAEKFDRKRKEL------------DIG 1418
             P     D  LDYNEVAAALENIYKLSP   +DV E   R R+              + G
Sbjct: 73   APPTATQD--LDYNEVAAALENIYKLSPAEVSDVEEADRRGRRRRGRSRKRAKEGDGEEG 130

Query: 1417 XXXXXXXXXXXXXXXXXXXVAMRRKQGDGEIRGGXXXXXXXXXXXXXXXXEYSLSTSDFV 1238
                                + RRK  + E                    EYS+ST D  
Sbjct: 131  NVVRNRKRRVRRLSLEKRIASRRRKDEEVEAAAARDERRDLDEDGEKLLREYSVST-DLA 189

Query: 1237 SLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMTVS 1058
            SLDWKKMKIPPVL S+E   LF+LMQPMKAIFEVK+NL KDLN+EPT+ ELA AVNMTV 
Sbjct: 190  SLDWKKMKIPPVLSSAEHNRLFELMQPMKAIFEVKKNLDKDLNREPTDAELAVAVNMTVP 249

Query: 1057 QLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDRFE 878
            +LRRHIEVGQAARN LIKHNLRLVLFVINKYY E+ASG  FQDLCQAGVKGLITAIDRFE
Sbjct: 250  RLRRHIEVGQAARNMLIKHNLRLVLFVINKYYPEIASGQKFQDLCQAGVKGLITAIDRFE 309

Query: 877  PKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPTEE 698
            PKRGFRLSTYGLFWIRHSITRSMT SSFTRVPFGIESVRQEIQKAKLEL  EL RLP +E
Sbjct: 310  PKRGFRLSTYGLFWIRHSITRSMTVSSFTRVPFGIESVRQEIQKAKLELQFELGRLPKDE 369

Query: 697  EIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXXXX 518
            EII RV ISPERYHDVMKA+K ++SL++RH VTQEEF            DK RQ      
Sbjct: 370  EIIDRVKISPERYHDVMKAAKPIFSLHARHAVTQEEFIDGITDMDGVGGDKHRQRALLRL 429

Query: 517  XXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKHPA 338
                    LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHELKA MKLKHPA
Sbjct: 430  ALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHELKAFMKLKHPA 489

Query: 337  RLDYLRRYI 311
            R+DYL RY+
Sbjct: 490  RVDYLCRYV 498


>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  503 bits (1295), Expect = e-139
 Identities = 293/508 (57%), Positives = 343/508 (67%), Gaps = 30/508 (5%)
 Frame = -3

Query: 1744 LGFLSRRS---NPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKS 1574
            LG  SR S     + RP+ I+AFKTD+ K  A+ T   EP  + ++  KE + R      
Sbjct: 15   LGLSSRFSVHQTQLKRPL-ILAFKTDKAKDRALVT-HHEPIPLPMDTPKENQKR------ 66

Query: 1573 LSHKRQQPKRVKP---------DADLDYNEVAAALENIYKLSPPADVAEKFD-------R 1442
            L    +  KRVK            ++DYN+VAA LE+IYKLSPP DV++  D       R
Sbjct: 67   LRRATKPSKRVKVVCSDEASSCTIEMDYNDVAAKLESIYKLSPPTDVSDVDDTDRVGRRR 126

Query: 1441 KRKELDIGXXXXXXXXXXXXXXXXXXXV----------AMRRKQGDGEIR-GGXXXXXXX 1295
            +R    +G                              A+RRK+ +G ++  G       
Sbjct: 127  RRTRKKLGEADRKTGKESSDNVIRNHNKNKRLSLDRRIALRRKKEEGAVQLSGVKEGSKE 186

Query: 1294 XXXXXXXXXEYSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKD 1115
                     EYS+ST D  SLDWKKMKIPPVL SSE AWLFKLMQPM A+F++KENLH+D
Sbjct: 187  DGDVDKLVGEYSVST-DLASLDWKKMKIPPVLPSSEHAWLFKLMQPMNALFQMKENLHRD 245

Query: 1114 LNKEPTEGELATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMF 935
            L +EPT+GELA + NM+V Q+RR IEVG+AARN+LIKHNLRLVLFVINKY+ E A+G  F
Sbjct: 246  LGREPTDGELADSTNMSVFQVRRCIEVGRAARNRLIKHNLRLVLFVINKYFQEFANGPKF 305

Query: 934  QDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQE 755
            QDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRH+I RSMT SSFTRV FG+ESVR E
Sbjct: 306  QDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVE 365

Query: 754  IQKAKLELMSELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXX 575
            IQ+AKLELM EL+RLPTEEEII +VGISPERYH+V+KASK V+SL+SRH +TQEEF    
Sbjct: 366  IQRAKLELMFELERLPTEEEIIKKVGISPERYHEVIKASKPVFSLHSRHAITQEEFINGI 425

Query: 574  XXXXXXXXDKGRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSIS 395
                    DK RQ              LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+IS
Sbjct: 426  TDIEGVGGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 485

Query: 394  REMVRKHELKALMKLKHPARLDYLRRYI 311
            REMVRKHE+KALMKLKHP R+DYLRRYI
Sbjct: 486  REMVRKHEVKALMKLKHPTRVDYLRRYI 513


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  498 bits (1282), Expect = e-138
 Identities = 287/497 (57%), Positives = 335/497 (67%), Gaps = 23/497 (4%)
 Frame = -3

Query: 1732 SRRSNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKE--RRPRKDSTKSLSHKR 1559
            S    P+ RP+ ++AFK D+ K  A+ T   EP  + +E SK+  +R R+ S  S   K 
Sbjct: 24   SNHQTPLRRPL-VLAFKADKAKNIALVTP-HEPIPLPIETSKDHKKRLRRASKPSKRVKA 81

Query: 1558 QQPKRVKP-DADLDYNEVAAALENIYKLSPPADVAEKFD-----------RKR------- 1436
                 V P   +LDYNE AA LENIYKLSP  DV+E  D           RKR       
Sbjct: 82   VSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQRRKRVTLADDK 141

Query: 1435 KELDIGXXXXXXXXXXXXXXXXXXXVAMRRKQGDGEIRG--GXXXXXXXXXXXXXXXXEY 1262
             E ++                    +A+ + + +  +                     EY
Sbjct: 142  AEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNEDENIDVLVREY 201

Query: 1261 SLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELA 1082
            S ST D VSLDWKKMKIPPVL  SE AWLFKLMQPMK + EVK+NL KDL +EPT+GELA
Sbjct: 202  SAST-DLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELA 260

Query: 1081 TAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGL 902
             A++M+  Q+RRH+EVGQAARNKLIKHNLRLVLFVINKY+ E A+G  FQDLCQAGVKGL
Sbjct: 261  EAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGL 320

Query: 901  ITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSE 722
            ITAIDRFEPKR FRLSTYGLFWIRH+I RSMT SSFTRV FG+ESVR EIQ+AKLEL+ +
Sbjct: 321  ITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELLFK 380

Query: 721  LQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKG 542
            LQRLPTEEEII +VGISPERYH+VM+ASKSV SL++RH  TQEE+            D+G
Sbjct: 381  LQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRG 440

Query: 541  RQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKA 362
            RQ              LKPKESLV+RQRYGLDGKGDRTLGEIAGNLSISREMVRKHE+KA
Sbjct: 441  RQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKA 500

Query: 361  LMKLKHPARLDYLRRYI 311
            LMKLKHPAR+DYLR+YI
Sbjct: 501  LMKLKHPARVDYLRQYI 517


>ref|XP_009410848.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Musa acuminata subsp.
            malaccensis]
          Length = 505

 Score =  487 bits (1253), Expect = e-134
 Identities = 287/496 (57%), Positives = 329/496 (66%), Gaps = 19/496 (3%)
 Frame = -3

Query: 1741 GFLSRRSNPIGRPVSIVAFKTDQ-TKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSH 1565
            G   RRS+P+ RP   +AFK     KCSA+ T    P  +  E  KE  P+K   ++   
Sbjct: 18   GLAVRRSSPLRRPFFFLAFKGGPGAKCSALVTP---PEAVTQEAVKE--PKKSPARAAKR 72

Query: 1564 KRQ--------QPKRVKPD----ADLDYNEVAAALENIYKLSPPADVAEKFDRKRK---- 1433
             ++         P    P      D DY+EVAAALENIYKLSP ADV++  +  R+    
Sbjct: 73   SKRGKAVAVVAAPTTAAPSDACPRDPDYSEVAAALENIYKLSP-ADVSDGEESGRQTVVK 131

Query: 1432 --ELDIGXXXXXXXXXXXXXXXXXXXVAMRRKQGDGEIRGGXXXXXXXXXXXXXXXXEYS 1259
               L +                       RR + +                      EYS
Sbjct: 132  DGSLGVDNVVRNRKKRVKRLGLEERISMRRRPKEEAGTEARRGEGREFDEDVEILVREYS 191

Query: 1258 LSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELAT 1079
             ST+   SLDWK+MKIPPVL S+E  WLFKLMQPMKAI +VKE ++KDLN+EPT+GELA 
Sbjct: 192  GSTN-LDSLDWKRMKIPPVLSSAEHTWLFKLMQPMKAILQVKEGMYKDLNREPTDGELAD 250

Query: 1078 AVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLI 899
            AVNM+V QLRRHIEV +AAR+KLIKHNLRLVLFVINKYY E+ASG  FQ+ CQAG KGLI
Sbjct: 251  AVNMSVPQLRRHIEVARAARDKLIKHNLRLVLFVINKYYPEIASGQKFQEFCQAGAKGLI 310

Query: 898  TAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSEL 719
            TAIDRFEPKRGFRLSTY LFWIRHSI RSMT SSFT+VPFGIESVRQEI+KAKLEL  EL
Sbjct: 311  TAIDRFEPKRGFRLSTYSLFWIRHSIIRSMTLSSFTKVPFGIESVRQEIKKAKLELSFEL 370

Query: 718  QRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGR 539
             RLPTEEEI+ RVGIS ERY++VMKASK V SLN+RHVVTQEEF            DK R
Sbjct: 371  GRLPTEEEIVDRVGISLERYNEVMKASKPVLSLNARHVVTQEEF-INGITDIDVGGDKRR 429

Query: 538  QXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKAL 359
            Q              L+PKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHELKAL
Sbjct: 430  QPAVLRLALDDVLDSLRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHELKAL 489

Query: 358  MKLKHPARLDYLRRYI 311
            +KLKHP R+DYLRRY+
Sbjct: 490  LKLKHPTRVDYLRRYV 505


>ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
            gi|734381809|gb|KHN23396.1| RNA polymerase sigma factor
            rpoD [Glycine soja]
          Length = 507

 Score =  475 bits (1222), Expect = e-131
 Identities = 272/490 (55%), Positives = 320/490 (65%), Gaps = 19/490 (3%)
 Frame = -3

Query: 1723 SNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQPKR 1544
            +N + RP+ IVAFK D+   SA+  T ++    +    K ++ R   T  L  +   P  
Sbjct: 23   NNRLKRPL-IVAFKGDKHNDSALVATQEKIPVPVETAKKTQKKRIGKTNKLPKRESSPSS 81

Query: 1543 VKPDADLDYNEVAAALENIYKLSPPAD------------------VAEKFDRKRKELDIG 1418
            +    D+DYNE AA LEN+YKLSP +D                  V ++ + K  + D  
Sbjct: 82   M----DVDYNEAAAMLENLYKLSPASDNAECIDGKIKRVSRRGKKVVDESEEKELKGDWV 137

Query: 1417 XXXXXXXXXXXXXXXXXXXVAMRRKQGDGEI-RGGXXXXXXXXXXXXXXXXEYSLSTSDF 1241
                                    K GD  I                    EYS+ST DF
Sbjct: 138  VRNQNKNKKPKRLNLDQRISLKNNKSGDEVIPTRKKRNVGNKIEKIEELIREYSVST-DF 196

Query: 1240 VSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMTV 1061
            VS+DWK+M+IPPVL SSE AWLFKLMQPMKA+ +VKE+L ++L +EP +GELA A NM++
Sbjct: 197  VSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPADGELADATNMSI 256

Query: 1060 SQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDRF 881
            +Q+R+ I+VGQAARNKLIKHNLRLVLFVINKY+ + ASG  FQDLCQAGVKGLITAIDRF
Sbjct: 257  TQVRKAIDVGQAARNKLIKHNLRLVLFVINKYFTDFASGPRFQDLCQAGVKGLITAIDRF 316

Query: 880  EPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPTE 701
            EP R FRLSTY LFWIRH+I RSMT S+FTRVPFG+ESVR EIQKAK EL  ELQR PTE
Sbjct: 317  EPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTELTFELQRSPTE 376

Query: 700  EEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXXX 521
            EEII RV ISPERYHDV+KASKS+ SLNSRH  TQEEF            D  +Q     
Sbjct: 377  EEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVDDDGVNGDNRKQPALLR 436

Query: 520  XXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKHP 341
                     LKPKESLVIRQR+GLDGKGDRTLGEIAGNL+ISREMVRKHE+KALMKLKH 
Sbjct: 437  LALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHS 496

Query: 340  ARLDYLRRYI 311
            ARLDYLRRY+
Sbjct: 497  ARLDYLRRYV 506


>ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            [Glycine max] gi|382365034|dbj|BAM05478.1| sigma-like
            factor 5B [Glycine max]
          Length = 507

 Score =  473 bits (1216), Expect = e-130
 Identities = 271/490 (55%), Positives = 319/490 (65%), Gaps = 19/490 (3%)
 Frame = -3

Query: 1723 SNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQPKR 1544
            +N + RP+ IVAFK D+   SA+  T ++    +    K ++ R   T  L  +   P  
Sbjct: 23   NNRLKRPL-IVAFKGDKHNDSALVATQEKIPVPVETAKKTQKKRIGKTNKLPKRESSPSS 81

Query: 1543 VKPDADLDYNEVAAALENIYKLSPPAD------------------VAEKFDRKRKELDIG 1418
            +    D+DYNE AA LEN+YKLSP +D                  V ++ + K  + D  
Sbjct: 82   M----DVDYNEAAAMLENLYKLSPASDNAECIDGKIKRVSRRGKKVVDESEEKELKGDWV 137

Query: 1417 XXXXXXXXXXXXXXXXXXXVAMRRKQGDGEI-RGGXXXXXXXXXXXXXXXXEYSLSTSDF 1241
                                    K GD  I                    EYS+ST DF
Sbjct: 138  VRNQNKNKKPKRLNLDQRISLKNNKSGDEVIPTRKKRNVGNKIEKIEELIREYSVST-DF 196

Query: 1240 VSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMTV 1061
            VS+DWK+M+IPPVL SSE AWLFKLMQPMKA+ +VKE+L ++L +EP +GELA A NM++
Sbjct: 197  VSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPADGELADATNMSI 256

Query: 1060 SQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDRF 881
            +Q+R+ I+VGQAARNKLIKHNLRLVLFVINKY+ + ASG  FQDLCQAGVKGLITAIDRF
Sbjct: 257  TQVRKAIDVGQAARNKLIKHNLRLVLFVINKYFTDFASGPRFQDLCQAGVKGLITAIDRF 316

Query: 880  EPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPTE 701
            EP R FRLSTY LFWIRH+I RSMT S+FTRVPFG+ESVR EIQKAK EL  ELQR PTE
Sbjct: 317  EPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTELTFELQRSPTE 376

Query: 700  EEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXXX 521
            EEII RV ISPERYHDV+KASKS+ SLNSRH  TQEEF            D  +Q     
Sbjct: 377  EEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVDDDGVNGDNRKQPALLR 436

Query: 520  XXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKHP 341
                     LKPKESLVIR R+GLDGKGDRTLGEIAGNL+ISREMVRKHE+KALMKLKH 
Sbjct: 437  LALDDVLDSLKPKESLVIRXRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHS 496

Query: 340  ARLDYLRRYI 311
            ARLDYLRRY+
Sbjct: 497  ARLDYLRRYV 506


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  470 bits (1209), Expect = e-129
 Identities = 264/488 (54%), Positives = 322/488 (65%), Gaps = 25/488 (5%)
 Frame = -3

Query: 1699 SIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQPKRVKPDA--- 1529
            SIV+ K D+T   A+    ++    +  P K+R       K L    +  KRVK  +   
Sbjct: 32   SIVSLKADKTNNIALVAPQEQIPLPIQTPKKQR-------KRLGRAIKTSKRVKAVSTDV 84

Query: 1528 ------DLDYNEVAAALENIYKLSPPADVAEKFD------RKRKELDIGXXXXXXXXXXX 1385
                  +LD+NE AA LENIYKLSPP D ++  D      R RK ++ G           
Sbjct: 85   TSPCTLELDFNEAAAKLENIYKLSPPTDCSDTEDIDGMKSRHRKRMNGGDDTGEKRTSDN 144

Query: 1384 XXXXXXXXVA----------MRRKQGDGEIRGGXXXXXXXXXXXXXXXXEYSLSTSDFVS 1235
                    V           +R K+GD +                        +++D VS
Sbjct: 145  VVRNRTKKVKRLSLDRRISLIRNKEGDADSSSRSKIDQKNENYSVDWLVREYSASTDLVS 204

Query: 1234 LDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMTVSQ 1055
            LDWKKMKIPPVL S E AWLFKLMQPMK + ++KENLHKD ++EPT+ ELA A+NM V +
Sbjct: 205  LDWKKMKIPPVLSSLEHAWLFKLMQPMKELLQLKENLHKDFSREPTDYELAEALNMNVIE 264

Query: 1054 LRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDRFEP 875
            +R+ ++VG+AARNKLIKHNLRLVLFV+NKY+ + A+G  FQDLCQAGVKGLITAIDRFEP
Sbjct: 265  MRKDMDVGRAARNKLIKHNLRLVLFVMNKYFQDFANGPRFQDLCQAGVKGLITAIDRFEP 324

Query: 874  KRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPTEEE 695
            KR  RLSTYGLFWIRH+ITRS+T SSFTRV FG+ESVR EIQ+AKLEL+ EL RLPTE+E
Sbjct: 325  KRRVRLSTYGLFWIRHAITRSLTLSSFTRVSFGLESVRVEIQRAKLELLFELHRLPTEDE 384

Query: 694  IIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXXXXX 515
            II +VGIS ERYH+VM+A+K VYSL+++H++T EEF            D+ RQ       
Sbjct: 385  IIEKVGISFERYHEVMRAAKPVYSLHAKHMITHEEFINALTDVDGIHGDQRRQPALFRLA 444

Query: 514  XXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKHPAR 335
                   LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHE+KALMKLKHPAR
Sbjct: 445  LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 504

Query: 334  LDYLRRYI 311
            +DYLRRY+
Sbjct: 505  VDYLRRYL 512


>gb|AKC88745.1| sigma factor [Melianthus villosus]
          Length = 513

 Score =  465 bits (1196), Expect = e-128
 Identities = 273/500 (54%), Positives = 323/500 (64%), Gaps = 22/500 (4%)
 Frame = -3

Query: 1744 LGFLSRRSN---PIGRPVSIVAFKTDQTKCSA-VATTSQEPATILLEPSKERRPRKDSTK 1577
            LG  ++ SN    + RP+ IVAFKTD+    A VA   Q P  +     +++R  + +  
Sbjct: 15   LGLSTKPSNHRCTLKRPL-IVAFKTDKINDIALVAPHDQIPLPVANAKKQQKRLGRGTKP 73

Query: 1576 SLSHKRQQPKRVKP-DADLDYNEVAAALENIYKLSPPADVAEK------FDRKRK----- 1433
            S   K        P   +LD+NE AA LENIYKLSPP+D ++        DR R+     
Sbjct: 74   SKRTKVVYADESSPCTLELDFNEAAAKLENIYKLSPPSDTSDVENQDGLMDRGRRRRRNR 133

Query: 1432 ------ELDIGXXXXXXXXXXXXXXXXXXXVAMRRKQGDGEIRGGXXXXXXXXXXXXXXX 1271
                  +                         +R K+     R                 
Sbjct: 134  GDDTTQKRTTDNVVRNQTKKVKRLSLDKRVALIRHKEDVDVSRRRKTDHKNKSYNIEILV 193

Query: 1270 XEYSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEG 1091
             EYS ST D  SLDWKKMKIPPVL SSE +WLFKLMQPMK +   KENL  DL +EPT+ 
Sbjct: 194  REYSSST-DMASLDWKKMKIPPVLSSSEHSWLFKLMQPMKGLLNFKENLKTDLGREPTDY 252

Query: 1090 ELATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGV 911
            ELA A NM V +L++ +EVG+AARNKLIKHNLRLVLFVINKY+ + A+G  FQDLCQAGV
Sbjct: 253  ELADATNMNVVKLKKEMEVGRAARNKLIKHNLRLVLFVINKYFQDFANGSRFQDLCQAGV 312

Query: 910  KGLITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLEL 731
            KGLITAIDRFEPKR FRLSTYGLFWIRH+ITRSMT SSFTRV FG+ESVR EIQKAK EL
Sbjct: 313  KGLITAIDRFEPKRKFRLSTYGLFWIRHAITRSMTLSSFTRVSFGLESVRAEIQKAKFEL 372

Query: 730  MSELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXX 551
            +  LQRLPTEEEII +VG+SPERYH+V++ASK V SL+++H++TQEEF            
Sbjct: 373  LFRLQRLPTEEEIIEKVGVSPERYHEVLRASKPVLSLHAKHMITQEEFINVITDVDGVGA 432

Query: 550  DKGRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHE 371
            D+ RQ              LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHE
Sbjct: 433  DQRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 492

Query: 370  LKALMKLKHPARLDYLRRYI 311
            +KALMKLKHPAR+DYLR Y+
Sbjct: 493  VKALMKLKHPARVDYLRPYL 512


>ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Glycine max]
          Length = 509

 Score =  465 bits (1196), Expect = e-128
 Identities = 272/501 (54%), Positives = 325/501 (64%), Gaps = 23/501 (4%)
 Frame = -3

Query: 1744 LGFLSRRS-NPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLS 1568
            LGF ++ S + + RP+ IVAFK D+   SA+  T QE   + +E +K     K   K + 
Sbjct: 15   LGFNTKFSTHRLKRPL-IVAFKGDKHNDSALVAT-QEKIPVPVETAK-----KTQKKRIG 67

Query: 1567 HKRQQPKRVKPDA--DLDYNEVAAALENIYKLSPPA---------DVAEKFDRKRKELDI 1421
               + PKR    +  D+DYNE AA LENIYKLSP +         D  ++  R+ K++  
Sbjct: 68   KSNKLPKRESSPSSMDVDYNEAAAMLENIYKLSPASHTGNAECIDDKIKRVSRRGKKVVD 127

Query: 1420 GXXXXXXXXXXXXXXXXXXXVAMR-----------RKQGDGEIRGGXXXXXXXXXXXXXX 1274
                                 A R            K+GD  I                 
Sbjct: 128  ESEEKELKGDRVVRRQNKNKKAKRLTLDQRISLKNNKRGDEVIPTRKKRNFRNRIEKIEE 187

Query: 1273 XXEYSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTE 1094
                   ++DF+S+DWK+M+IPPVL SSE AWLFKLMQPMKA+ +VKE+L K+L +EP +
Sbjct: 188  LIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQKELAREPAD 247

Query: 1093 GELATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAG 914
            GELA A NM+++Q+++ I+VGQAARNKLIKHNLRLVLFVINKY+ + ASG  FQDLCQAG
Sbjct: 248  GELADATNMSITQVKKAIDVGQAARNKLIKHNLRLVLFVINKYFTDFASGPRFQDLCQAG 307

Query: 913  VKGLITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLE 734
            VKGLITAIDRFEP R FRLSTY LFWIRH+I RSMT SSF RVPFG+ESVR EIQKAK E
Sbjct: 308  VKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFIRVPFGLESVRAEIQKAKTE 367

Query: 733  LMSELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXX 554
            L  +LQR PTEEEII RV ISPERYHD++KASKS+ SLNSRH  TQEEF           
Sbjct: 368  LTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTTTQEEFINGIVDDDGVN 427

Query: 553  XDKGRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKH 374
             D  +Q              LKPKESLVIRQR+GLDGKGDRTLGEIAGNL+ISREMVRKH
Sbjct: 428  GDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKH 487

Query: 373  ELKALMKLKHPARLDYLRRYI 311
            E+KALMKL H ARLDYLRRY+
Sbjct: 488  EVKALMKLNHSARLDYLRRYV 508


>ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
          Length = 519

 Score =  463 bits (1191), Expect = e-127
 Identities = 268/498 (53%), Positives = 326/498 (65%), Gaps = 29/498 (5%)
 Frame = -3

Query: 1717 PIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQPKRVK 1538
            P+ RPV +V+FK D+TK + +    +E  ++ +E SKE   R   ++ +S + ++   V 
Sbjct: 27   PLKRPV-VVSFKKDKTKKTTLVAP-KESISLPIETSKENEKR---SRRVSKRTERVHAVS 81

Query: 1537 PDAD-------LDYNEVAAALENIYKLSPPAD----------VAEKFDRKRKELDIGXXX 1409
             D +       LDY+E AA LE+IYK S   D          + ++  R RK +  G   
Sbjct: 82   IDIEASTSPLELDYSEAAAKLESIYKRSLETDSSDTEAKDHQIVKRRQRTRKRIVEGDEE 141

Query: 1408 XXXXXXXXXXXXXXXXVA----------MRRKQGD--GEIRGGXXXXXXXXXXXXXXXXE 1265
                                        ++ K+G+     +                  E
Sbjct: 142  TKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVASSQKRELKEDTEDEKIDKLVRE 201

Query: 1264 YSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGEL 1085
            YS +T D  SLDWKKMKIPPVL SSE AWLFKLMQPMKAI +VKENL  DL +EPT+ E 
Sbjct: 202  YSGAT-DLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEA 260

Query: 1084 ATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKG 905
            A A N+  S+LR+++EVG+AARNKLIKHNLRLVLFVINKY+ + A+G  FQDLCQAGVKG
Sbjct: 261  AEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKG 320

Query: 904  LITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMS 725
            LITAIDRFEP R FRLSTYGLFWIRH+I RSMTTSSFT+VPFG+ES+R EIQKAKL+L+ 
Sbjct: 321  LITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAKLQLLF 380

Query: 724  ELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDK 545
            ELQR+PT+EEII RV +SPERYH+VMK SK V+SL++RH+ TQEE             DK
Sbjct: 381  ELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHMTTQEELINGITDVDGVDGDK 440

Query: 544  GRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELK 365
             RQ              LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHE+K
Sbjct: 441  RRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVK 500

Query: 364  ALMKLKHPARLDYLRRYI 311
            ALMKLKHP R+DYLRRYI
Sbjct: 501  ALMKLKHPTRVDYLRRYI 518


>ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 519

 Score =  463 bits (1191), Expect = e-127
 Identities = 266/498 (53%), Positives = 327/498 (65%), Gaps = 29/498 (5%)
 Frame = -3

Query: 1717 PIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQPKRVK 1538
            P+ RPV +V+FK D+TK + +    +E  ++ +E SKE   R   ++ +S + ++   V 
Sbjct: 27   PLKRPV-VVSFKKDKTKKTTLVAP-KESISLPIETSKENEKR---SRRVSKRTERVHAVS 81

Query: 1537 PDAD-------LDYNEVAAALENIYKLSPPAD----------VAEKFDRKRKELDIGXXX 1409
             D +       LDY+E AA LE+IYK S   D          + ++  R RK +  G   
Sbjct: 82   IDIEASPSTLELDYSEAAAKLESIYKRSLETDSSDTEAKDHQIVKRRQRTRKRIIEGNEE 141

Query: 1408 XXXXXXXXXXXXXXXXVA----------MRRKQGD--GEIRGGXXXXXXXXXXXXXXXXE 1265
                                        ++ K+G+     +                  E
Sbjct: 142  AKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVASSQKRELKEDTEDEKIDKLVRE 201

Query: 1264 YSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGEL 1085
            YS +T D  SLDWKKMKIPPVL SSE AWLFKLMQPMKAI +VKENL  DL +EPT+ E+
Sbjct: 202  YSGAT-DLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEV 260

Query: 1084 ATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKG 905
            A A N+  S+LR+++EVG+AARNKLIKHNLRLVLFVINKY+ + A+G  FQDLCQAGVKG
Sbjct: 261  AEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKG 320

Query: 904  LITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMS 725
            LITAIDRFEP R FRLSTYGLFWIRH+I RSMTTSSFT+VPFG+ES+R EIQKAKL+L+ 
Sbjct: 321  LITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAKLQLLF 380

Query: 724  ELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDK 545
            ELQR+PT+EEII RV +SPERYH+VMK SK V+SL++RH+ TQEEF             K
Sbjct: 381  ELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHMTTQEEFINGITDVDGVDGVK 440

Query: 544  GRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELK 365
             +Q              LKPKESLVIRQRYGLDGKG+RTLGEIAGNL+ISREMVRKHE+K
Sbjct: 441  RKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVK 500

Query: 364  ALMKLKHPARLDYLRRYI 311
            ALMKLKHP R+DYLRRYI
Sbjct: 501  ALMKLKHPTRVDYLRRYI 518


>ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Jatropha curcas]
            gi|643706039|gb|KDP22171.1| hypothetical protein
            JCGZ_26002 [Jatropha curcas]
          Length = 502

 Score =  463 bits (1191), Expect = e-127
 Identities = 269/488 (55%), Positives = 321/488 (65%), Gaps = 20/488 (4%)
 Frame = -3

Query: 1714 IGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQPKRVKP 1535
            + RP+ IVAFK D++  +A+   S+     +  P  ++R  K + + LS           
Sbjct: 28   VKRPL-IVAFKDDKSNNTALVAPSERIPLPIETPKGKKRRGKTNNEVLSCA--------- 77

Query: 1534 DADLDYNEVAAALENIYKLSPPADVAE-----------KFDRKRKELD------IGXXXX 1406
              ++DYNE AA LENI+KLSP  D A+           +  RK +E D            
Sbjct: 78   -LEVDYNEAAAKLENIFKLSPTTDTADVDVSDLSKKGKQKKRKTREDDGKAGKGANKPIV 136

Query: 1405 XXXXXXXXXXXXXXXVAMRRKQGDGEIRGGXXXXXXXXXXXXXXXXE---YSLSTSDFVS 1235
                           +A+R+   + +I                       YS ST D VS
Sbjct: 137  RNRAKKTKRLDLDTRIALRKNNEEEKITSTIRKKKDTRHENEKIEELVREYSAST-DLVS 195

Query: 1234 LDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMTVSQ 1055
            LDWKKMKIPPVL S+E AWLFKLMQPMKA+ +VK++L  +L +EPTEGELA A NM V Q
Sbjct: 196  LDWKKMKIPPVLHSTEHAWLFKLMQPMKALLQVKDHLQTNLGREPTEGELAEATNMKVEQ 255

Query: 1054 LRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDRFEP 875
            +R+ +E G+AARNKLIKHNLRLVLFVINKY+ + A+G  FQDLCQAGVKGLITAIDRFEP
Sbjct: 256  VRKQLEAGRAARNKLIKHNLRLVLFVINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEP 315

Query: 874  KRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPTEEE 695
            KR FRLSTY LFWIRH+I RSMT SSFTRV FG+ESVR EIQKA+LEL+ ELQR PTE E
Sbjct: 316  KRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKARLELLIELQRQPTEVE 375

Query: 694  IIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXXXXX 515
            II RVGISPERYH+VM+ASK +YSL+SRHVVTQEEF            D  RQ       
Sbjct: 376  IIERVGISPERYHEVMRASKPIYSLHSRHVVTQEEF--INGITDTDGGDNRRQPALLRLA 433

Query: 514  XXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKHPAR 335
                   LKPKES+VIRQRYGLDGKGDRTLGEIAGNL+ISREMVRK+E+KAL+KLKHPAR
Sbjct: 434  LDDVLDSLKPKESVVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALLKLKHPAR 493

Query: 334  LDYLRRYI 311
            +DYLRRY+
Sbjct: 494  VDYLRRYV 501


>ref|XP_010523561.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Tarenaya hassleriana]
          Length = 504

 Score =  462 bits (1188), Expect = e-127
 Identities = 267/489 (54%), Positives = 323/489 (66%), Gaps = 14/489 (2%)
 Frame = -3

Query: 1735 LSRRSNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQ 1556
            L++RS  + RP S+VAFK D++  SA+    ++      +P ++R PRK+  KS S    
Sbjct: 22   LTQRS-ALKRP-SVVAFKADKSSHSALVIPREKILLPAEQPKEKRVPRKNPKKSKS---- 75

Query: 1555 QPKRVKPDA--DLDYNEVAAALENIYKLSPPADVAEKFDRKRKE--------LDIGXXXX 1406
                V P +  D+DYNE AA LE+I+KLS          RKRK+                
Sbjct: 76   SDTNVAPSSALDVDYNEAAARLESIFKLSTATTRKVPSRRKRKDDSDEKKTTTKTAKMVV 135

Query: 1405 XXXXXXXXXXXXXXXVAMRR----KQGDGEIRGGXXXXXXXXXXXXXXXXEYSLSTSDFV 1238
                           ++++R    K     ++                  +YS ST D V
Sbjct: 136  SNKTKRRKRLSLDKRISLKRNNQEKSAVASVQKKTVKRLQEDEKMDRLVRDYSAST-DIV 194

Query: 1237 SLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMTVS 1058
            SLDWKKMKIPPVL S E +WLFKLMQPMKA+ +VK+ L K+L +EPT+ E+A   NM+V+
Sbjct: 195  SLDWKKMKIPPVLSSIEHSWLFKLMQPMKALLQVKDELQKNLGREPTDAEVADGANMSVA 254

Query: 1057 QLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDRFE 878
            + +R IE+G+AARNKLIKHNLRLVLFV+NKY+ + A+G  FQDLCQAGVKGLITAIDRFE
Sbjct: 255  EAKRRIEIGRAARNKLIKHNLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAIDRFE 314

Query: 877  PKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPTEE 698
            P R FRLSTYGLFWIRH+I RSMTTSSFTRVPFG+ESVR EIQ+AKLEL+ EL R+PT  
Sbjct: 315  PNRKFRLSTYGLFWIRHAIIRSMTTSSFTRVPFGLESVRVEIQRAKLELLFELGRVPTGS 374

Query: 697  EIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXXXX 518
            EI+ R+GISPERY +V+ A+K V SLNSRH VTQEEF            D  RQ      
Sbjct: 375  EIVERLGISPERYREVVIAAKPVLSLNSRHAVTQEEFIDGITDFDGVGSDNRRQPALLRL 434

Query: 517  XXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKHPA 338
                    LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHE+KALMKLKHPA
Sbjct: 435  ALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPA 494

Query: 337  RLDYLRRYI 311
            R+DYLRRYI
Sbjct: 495  RVDYLRRYI 503


>gb|KHN44232.1| RNA polymerase sigma factor rpoD [Glycine soja]
          Length = 519

 Score =  459 bits (1180), Expect = e-126
 Identities = 276/511 (54%), Positives = 324/511 (63%), Gaps = 33/511 (6%)
 Frame = -3

Query: 1744 LGFLSRRS-NPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLS 1568
            LGF ++ S + + RP+ IVAFK D+   SA+  T QE   + +E +K     K   K + 
Sbjct: 15   LGFNTKFSTHRLKRPL-IVAFKGDKHNDSALVAT-QEKIPVPVETAK-----KTQKKRIG 67

Query: 1567 HKRQQPKRVKPDA--DLDYNEVAAALENIYKLSPPADV--AEKFDRK------------- 1439
               + PKR    +  D+DYNE AA LENIYKLSP +D   AE  D K             
Sbjct: 68   KSNKLPKRESSPSSMDVDYNEAAAMLENIYKLSPASDTGNAECIDDKIKRVSRRGKKVVD 127

Query: 1438 ---RKEL--DIGXXXXXXXXXXXXXXXXXXXVAMRRKQGDGEIRGGXXXXXXXXXXXXXX 1274
                KEL  D                          K+GD  I                 
Sbjct: 128  ESEEKELKGDRVVRRQNKNKKAKRLTLDQRISLKNNKRGDEVIPTRKKRNFRNRIEKIEE 187

Query: 1273 XXEYSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMK----------AIFEVKENL 1124
                   ++DF+S+DWK+M+IPPVL SSE AWLFKLMQPMK          A+ +VKE+L
Sbjct: 188  LIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMKLSIKLLSIFLALLQVKEDL 247

Query: 1123 HKDLNKEPTEGELATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASG 944
             K+L +EP +GELA A NM+++Q+++ I+VGQAARNKLIKHNLRLVLFVINKY+ + ASG
Sbjct: 248  QKELAREPADGELADATNMSITQVKKAIDVGQAARNKLIKHNLRLVLFVINKYFTDFASG 307

Query: 943  DMFQDLCQAGVKGLITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESV 764
              FQDLCQAGVKGLITAIDRFEP R FRLSTY LFWIRH+I RSMT SSF RVPFG+ESV
Sbjct: 308  PRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFIRVPFGLESV 367

Query: 763  RQEIQKAKLELMSELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFX 584
            R EIQKAK EL  +LQR PTEEEII RV ISPERYHD++KASKS+ SLNSRH  TQEEF 
Sbjct: 368  RAEIQKAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTTTQEEFI 427

Query: 583  XXXXXXXXXXXDKGRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNL 404
                       D  +Q              LKPKESLVIRQR+GLDGKGDRTLGEIAGNL
Sbjct: 428  NGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNL 487

Query: 403  SISREMVRKHELKALMKLKHPARLDYLRRYI 311
            +ISREMVRKHE+KALMKL H ARLDYLRRY+
Sbjct: 488  NISREMVRKHEVKALMKLNHSARLDYLRRYV 518


>ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X2 [Solanum
            lycopersicum]
          Length = 487

 Score =  457 bits (1175), Expect = e-125
 Identities = 258/484 (53%), Positives = 317/484 (65%), Gaps = 10/484 (2%)
 Frame = -3

Query: 1732 SRRSNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQ 1553
            S R  P+ RPV IV+FK D TK +    + +E  +  +E SKE   R   ++ +S + ++
Sbjct: 22   SARLCPLKRPV-IVSFKKDITK-NTTLVSPKESISSPIETSKENEKR---SRRVSKRTER 76

Query: 1552 PKRVKPDA-----DLDYNEVAAALENIYK-----LSPPADVAEKFDRKRKELDIGXXXXX 1403
               V  +A     +LDY+E AA LE+IYK      SP  +V +   ++R           
Sbjct: 77   VHAVTIEAPPSTLELDYSEAAAKLESIYKRSLETASPNTEVKDHLVKRRPRT-------- 128

Query: 1402 XXXXXXXXXXXXXXVAMRRKQGDGEIRGGXXXXXXXXXXXXXXXXEYSLSTSDFVSLDWK 1223
                             +++  D  ++                  +     +D  SLDWK
Sbjct: 129  ------RKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGATDLASLDWK 182

Query: 1222 KMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGELATAVNMTVSQLRRH 1043
            KMKIPPVL SSE  WLFKLMQPMKAI +VKENL  DL +EPT+GE+A A NM  S+LR+ 
Sbjct: 183  KMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPTDGEVAEATNMDASELRKK 242

Query: 1042 IEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKGLITAIDRFEPKRGF 863
            +E G+AARNKLIKHNLRLVLFV+NKY+ + A+   FQDLCQAGVKGLITAIDRFEP R F
Sbjct: 243  LEAGRAARNKLIKHNLRLVLFVMNKYFQDFANASRFQDLCQAGVKGLITAIDRFEPNRKF 302

Query: 862  RLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMSELQRLPTEEEIIAR 683
            RLSTYGLFWIRH+I R MTTSSFT+VPFG+ES+R EIQKAKLEL+ ELQR+PT++EII R
Sbjct: 303  RLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVEIQKAKLELLFELQRIPTDDEIIKR 362

Query: 682  VGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDKGRQXXXXXXXXXXX 503
            VG SPERYH+VMK SK ++SL++R+  TQEE             DK +Q           
Sbjct: 363  VGFSPERYHEVMKVSKPIFSLHARNKTTQEELINGITDVDGVDGDKRKQPALLRLALDDV 422

Query: 502  XXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKALMKLKHPARLDYL 323
               LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHE+KALMKLKHP R+DY+
Sbjct: 423  LDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYV 482

Query: 322  RRYI 311
            RRYI
Sbjct: 483  RRYI 486


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  455 bits (1170), Expect = e-125
 Identities = 234/318 (73%), Positives = 262/318 (82%)
 Frame = -3

Query: 1264 YSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGEL 1085
            YS ST D VSLDWKKM+IPPVL SSE  WLFKLMQPMK + EVKE L KDL +EP +GEL
Sbjct: 203  YSAST-DLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKGLLEVKEILQKDLGREPNKGEL 261

Query: 1084 ATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKG 905
            A A NMTV Q++RH+EVG+AARNKLIKHNLRLVLFVINKY+ + A+G  FQDLCQAGVKG
Sbjct: 262  AEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKG 321

Query: 904  LITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMS 725
            LITAIDRFEP+R FRLSTYGLFWIRH+I RSMT SSFTRV FG+ESVR EIQKAKLE++ 
Sbjct: 322  LITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAKLEMLV 381

Query: 724  ELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDK 545
            +L+R+PTE+EII +VGISPERYH+VM+ASK V+SLNSRH VTQEEF            D 
Sbjct: 382  QLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRHSVTQEEFINGITDVDGVDGDN 441

Query: 544  GRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELK 365
             R+              LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHE+K
Sbjct: 442  RRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVK 501

Query: 364  ALMKLKHPARLDYLRRYI 311
            ALMKLKHPAR+DYLRRYI
Sbjct: 502  ALMKLKHPARVDYLRRYI 519


>ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Cucumis melo]
          Length = 511

 Score =  454 bits (1169), Expect = e-125
 Identities = 272/498 (54%), Positives = 317/498 (63%), Gaps = 24/498 (4%)
 Frame = -3

Query: 1732 SRRSNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQ 1553
            S   + + RP SIVAFK D+   +    +  E  T+ +E +   + R  +T       + 
Sbjct: 22   SNHGSTLKRP-SIVAFKADK-HTNTTLVSPHEQVTLPVESNNRSKKRSGNTS------KP 73

Query: 1552 PKRVKP---------DADLDYNEVAAALENIYKLSP---PADVAEKFDRKR--------- 1436
             KRVK            DLDYNE AA LENI+KLSP    +D+  K  R +         
Sbjct: 74   LKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMTEDSDMESKDGRSKRGQQRSKKS 133

Query: 1435 -KELDIGXXXXXXXXXXXXXXXXXXXVAMRRK--QGDGEIRGGXXXXXXXXXXXXXXXXE 1265
             K    G                   +  +RK  +  G                     +
Sbjct: 134  DKRPSDGIVRNKTKRIKRLDLDKRIALKNKRKAERKSGSFIKETKETKNEDDEIDRLVRD 193

Query: 1264 YSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGEL 1085
            YS ST D VSLDWKKMKIPPVL SSE   LFKL+QPMKA+ EV+E L K+L +EPTE EL
Sbjct: 194  YSAST-DLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIEVQEELQKELGREPTEAEL 252

Query: 1084 ATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVKG 905
            A A NM V Q+RR +EVG+AARNKLIKHNLRLVLFVINKY+ + A+G  FQDLCQAGVKG
Sbjct: 253  ANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKG 312

Query: 904  LITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELMS 725
            LITAIDRFEPKR FRLSTY LFWIRH+I RSMT SSFTRV FG++SVR EIQ+AKLEL+ 
Sbjct: 313  LITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLC 372

Query: 724  ELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXDK 545
            EL RLPTEEEIIA+VGISPERY +VM+A+K VYSL+SRH  T EE             D 
Sbjct: 373  ELHRLPTEEEIIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDN 432

Query: 544  GRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELK 365
             RQ              LKPKESLVIRQRYGLDGKG+RTLGEIAGNL+ISREMVRKHE+K
Sbjct: 433  RRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVK 492

Query: 364  ALMKLKHPARLDYLRRYI 311
            ALMKLKHPAR+DYLRRY+
Sbjct: 493  ALMKLKHPARVDYLRRYL 510


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|641837169|gb|KDO56125.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837170|gb|KDO56126.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837171|gb|KDO56127.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837172|gb|KDO56128.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
          Length = 513

 Score =  454 bits (1169), Expect = e-125
 Identities = 268/499 (53%), Positives = 321/499 (64%), Gaps = 21/499 (4%)
 Frame = -3

Query: 1744 LGFLSRRSNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSH 1565
            L  +S RS    RP+ IVAFK D++   A+ +  ++    +  P + ++ R++S K L  
Sbjct: 17   LSTISHRSTS-KRPL-IVAFKADKSNNQALFSPQEQIPLPIETPKRHQKRRENSRKRLER 74

Query: 1564 -KRQQPKRVKP-DADLDYNEVAAALENIYKLSPPADVAE-----------KFDRKR---- 1436
             K        P   D+DYNE AA LENIYKLSP    +E           +  RKR    
Sbjct: 75   VKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGVVKRGRQRRKRIGEV 134

Query: 1435 --KELDIGXXXXXXXXXXXXXXXXXXXVAMRRKQGDGEI--RGGXXXXXXXXXXXXXXXX 1268
              K  D+                        RK  D ++  +                  
Sbjct: 135  EKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEHEKIEKLVR 194

Query: 1267 EYSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEGE 1088
            EYS ST D VSLDWKKMKIPPVL S+E  WLFKLMQPMK   +VKE L KDL +EPT+ E
Sbjct: 195  EYSYST-DLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVE 253

Query: 1087 LATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGVK 908
            LA A NM+ +Q+++ +EVG+AARNKLIKHNLRLVLFVI KY+ + A+G  FQDLCQAGVK
Sbjct: 254  LAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVK 313

Query: 907  GLITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLELM 728
            GLITAIDRFEPKR FRLSTYGLFWIRH+I RSMT SSFTRVPFG+ESVR EIQ+AKLEL+
Sbjct: 314  GLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELL 373

Query: 727  SELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXXD 548
             EL+R+PT+EEII  V ISPERY +VMKASK + SL+SRH VTQEEF            +
Sbjct: 374  FELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDGVENE 433

Query: 547  KGRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEL 368
              RQ              LKPKESLVIRQR+GLDGKGDRTLGEIAGNL+ISREMVRKHE+
Sbjct: 434  NQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEV 493

Query: 367  KALMKLKHPARLDYLRRYI 311
            K LMKLKHP R+DYLR+++
Sbjct: 494  KGLMKLKHPTRVDYLRQHM 512


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            lycopersicum]
          Length = 516

 Score =  452 bits (1164), Expect = e-124
 Identities = 264/500 (52%), Positives = 322/500 (64%), Gaps = 26/500 (5%)
 Frame = -3

Query: 1732 SRRSNPIGRPVSIVAFKTDQTKCSAVATTSQEPATILLEPSKERRPRKDSTKSLSHKRQQ 1553
            S R  P+ RPV IV+FK D TK +    + +E  +  +E SKE   R   ++ +S + ++
Sbjct: 22   SARLCPLKRPV-IVSFKKDITK-NTTLVSPKESISSPIETSKENEKR---SRRVSKRTER 76

Query: 1552 PKRVKPDA-----DLDYNEVAAALENIYK-----LSPPADVAEKFDRKR----------- 1436
               V  +A     +LDY+E AA LE+IYK      SP  +V +   ++R           
Sbjct: 77   VHAVTIEAPPSTLELDYSEAAAKLESIYKRSLETASPNTEVKDHLVKRRPRTRKRIVESD 136

Query: 1435 ---KELDIGXXXXXXXXXXXXXXXXXXXVAMRRKQGD--GEIRGGXXXXXXXXXXXXXXX 1271
               K+  +                      ++ K+G                        
Sbjct: 137  EEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSERRKLNEDTEDEKIDKLV 196

Query: 1270 XEYSLSTSDFVSLDWKKMKIPPVLRSSEQAWLFKLMQPMKAIFEVKENLHKDLNKEPTEG 1091
             EYS +T D  SLDWKKMKIPPVL SSE  WLFKLMQPMKAI +VKENL  DL +EPT+G
Sbjct: 197  REYSGAT-DLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPTDG 255

Query: 1090 ELATAVNMTVSQLRRHIEVGQAARNKLIKHNLRLVLFVINKYYHELASGDMFQDLCQAGV 911
            E+A A NM  S+LR+ +E G+AARNKLIKHNLRLVLFV+NKY+ + A+   FQDLCQAGV
Sbjct: 256  EVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANASRFQDLCQAGV 315

Query: 910  KGLITAIDRFEPKRGFRLSTYGLFWIRHSITRSMTTSSFTRVPFGIESVRQEIQKAKLEL 731
            KGLITAIDRFEP R FRLSTYGLFWIRH+I R MTTSSFT+VPFG+ES+R EIQKAKLEL
Sbjct: 316  KGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVEIQKAKLEL 375

Query: 730  MSELQRLPTEEEIIARVGISPERYHDVMKASKSVYSLNSRHVVTQEEFXXXXXXXXXXXX 551
            + ELQR+PT++EII RVG SPERYH+VMK SK ++SL++R+  TQEE             
Sbjct: 376  LFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEELINGITDVDGVDG 435

Query: 550  DKGRQXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHE 371
            DK +Q              LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRKHE
Sbjct: 436  DKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 495

Query: 370  LKALMKLKHPARLDYLRRYI 311
            +KALMKLKHP R+DY+RRYI
Sbjct: 496  VKALMKLKHPTRVDYVRRYI 515