BLASTX nr result
ID: Anemarrhena21_contig00014300
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00014300
(5202 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL78097.1|AC093568_7 Putative polyprotein [Oryza sativa] gi|... 991 0.0
gb|ABB46774.2| retrotransposon protein, putative, Ty3-gypsy subc... 989 0.0
gb|AAM14695.1|AC097446_24 Putative polyprotein [Oryza sativa Jap... 989 0.0
emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa Japonica Group] 989 0.0
gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subc... 989 0.0
gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-... 989 0.0
gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subc... 988 0.0
gb|ABF96299.1| retrotransposon protein, putative, Ty3-gypsy subc... 987 0.0
gb|AAN09852.1| putative polyprotein [Oryza sativa Japonica Group] 987 0.0
gb|ABG65971.1| retrotransposon protein, putative, Ty3-gypsy subc... 987 0.0
dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa I... 986 0.0
gb|AAM93458.1| putative polyprotein [Oryza sativa Japonica Group... 986 0.0
gb|AAS98511.1| putative polyprotein [Oryza sativa Japonica Group] 986 0.0
emb|CAE04935.2| OSJNBa0017P10.12 [Oryza sativa Japonica Group] g... 986 0.0
emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa Japonica Group] 986 0.0
gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group... 985 0.0
emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group] 985 0.0
gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subc... 984 0.0
dbj|BAH79971.1| hypothetical protein [Oryza sativa Indica Group] 984 0.0
gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subc... 984 0.0
>gb|AAL78097.1|AC093568_7 Putative polyprotein [Oryza sativa] gi|31430586|gb|AAP52480.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1473
Score = 991 bits (2562), Expect(2) = 0.0
Identities = 498/898 (55%), Positives = 631/898 (70%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 363 VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 421
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 422 SPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTV 481
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 482 HALSSES------------LRSRLNQVTLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 529
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 530 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 589
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF+TR
Sbjct: 590 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFITR 649
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 650 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 709
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 710 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 769
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 770 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLVSAPILILPDPK 829
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHDL+LAAVV ALK+WRHYL
Sbjct: 830 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLKLAAVVHALKIWRHYL 889
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 890 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 946
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 947 KGYCNATEGRQLPLELCKEFERLNLGIVSRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1006
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1007 KNRRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1066
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
+++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1067 KRFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1126
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1127 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1186
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1187 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1244
Score = 224 bits (572), Expect(2) = 0.0
Identities = 104/218 (47%), Positives = 157/218 (72%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1246 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1305
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1306 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYKIVSRRGEVA 1365
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVH+VFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1366 YQLELPQSLAGVHDVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETSER 1423
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +P+LF
Sbjct: 1424 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1461
Score = 77.4 bits (189), Expect = 1e-10
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 2/232 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYESQF 4262
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ F
Sbjct: 62 EFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTNQEKVSFASHQLHGPASEWWD-HF 120
Query: 4261 TLEE--RRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFT 4088
L + W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 121 RLNRITAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYA 180
Query: 4087 SDLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATX 3908
+ +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 181 PEDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKRRI 238
Query: 3907 XXXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T QP QG G+S+ R ++ F + +NQ P
Sbjct: 239 AQFKTQQGNNQKPRLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNQAP 289
>gb|ABB46774.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1695
Score = 989 bits (2558), Expect(2) = 0.0
Identities = 498/898 (55%), Positives = 629/898 (70%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 585 VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQR- 643
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLRI-PGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 644 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTV 703
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S R+ ++T+ E ++ G+ DVF D++PG+PP R+IEF +
Sbjct: 704 HALSS------------EFLRSRLNQITLEEIPIVRGYPDVFPDDLPGMPPKRDIEFRKD 751
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 752 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 811
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 812 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 871
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YS+++ EHEEHLRL
Sbjct: 872 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 931
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 932 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 991
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYRKFI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 992 LGLAGYYRKFIENFSKIAKPMTRLFQKDVKYKWSEECEQSFQELKNRLISAPILILPDPK 1051
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHDLELAAVV ALK+WRHYL
Sbjct: 1052 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 1111
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1112 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 1168
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1169 KGYCNATEGRQLPLELCKEFERLNLGIVSIGFVAALEAKPTLIDQVREAQTNDPDIQEIK 1228
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1229 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1288
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLP+T
Sbjct: 1289 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPKT 1348
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1349 SLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1408
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1409 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1466
Score = 222 bits (565), Expect(2) = 0.0
Identities = 103/218 (47%), Positives = 155/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1468 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1527
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKL PRF+GP++I+ R G V+
Sbjct: 1528 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLVPRFVGPYKIVSRRGEVA 1587
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+A VHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1588 YQLELPQSLAEVHNVFHVSQLKKCLRVPTEE--ANLEQIEVQEDLTYVEKPIRILETNER 1645
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +P+LF
Sbjct: 1646 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1683
Score = 75.1 bits (183), Expect = 6e-10
Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 35/265 (13%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 284 EFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 343
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 344 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 403
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAA------------KKQEVISD 3941
+ +E R F GL +L +++ K+V+ A KK+ +
Sbjct: 404 EDVRNDEERQEKFLEGLNDELSYPLMTEDYSDFQKLVDKAIHQEDKYNRMEQKKRRIAHF 463
Query: 3940 SARQVREQ--------------ATXXXXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQD 3803
A+Q Q + I + ST +
Sbjct: 464 KAQQGNNQKPRLTLGPQSMPHGGSSSVVRPQHQFFNNNAGNNIRNQAPRPVAASTQQQPA 523
Query: 3802 KR--------CFRCGQTGHFKNQCP 3752
KR CF CG GH+ ++CP
Sbjct: 524 KREQGSKPVVCFNCGDPGHYADKCP 548
>gb|AAM14695.1|AC097446_24 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1680
Score = 989 bits (2558), Expect(2) = 0.0
Identities = 498/898 (55%), Positives = 629/898 (70%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 570 VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQR- 628
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLRI-PGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 629 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTV 688
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S R+ ++T+ E ++ G+ DVF D++PG+PP R+IEF +
Sbjct: 689 HALSS------------EFLRSRLNQITLEEIPIVRGYPDVFPDDLPGMPPKRDIEFRKD 736
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 737 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 796
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 797 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 856
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YS+++ EHEEHLRL
Sbjct: 857 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 916
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 917 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 976
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYRKFI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 977 LGLAGYYRKFIENFSKIAKPMTRLFQKDVKYKWSEECEQSFQELKNRLISAPILILPDPK 1036
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHDLELAAVV ALK+WRHYL
Sbjct: 1037 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 1096
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1097 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 1153
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1154 KGYCNATEGRQLPLELCKEFERLNLGIVSIGFVAALEAKPTLIDQVREAQTNDPDIQEIK 1213
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1214 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1273
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLP+T
Sbjct: 1274 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPKT 1333
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1334 SLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1393
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1394 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1451
Score = 222 bits (565), Expect(2) = 0.0
Identities = 103/218 (47%), Positives = 155/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1453 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1512
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKL PRF+GP++I+ R G V+
Sbjct: 1513 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLVPRFVGPYKIVSRRGEVA 1572
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+A VHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1573 YQLELPQSLAEVHNVFHVSQLKKCLRVPTEE--ANLEQIEVQEDLTYVEKPIRILETNER 1630
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +P+LF
Sbjct: 1631 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1668
Score = 75.1 bits (183), Expect = 6e-10
Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 35/265 (13%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 269 EFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 328
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 329 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 388
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAA------------KKQEVISD 3941
+ +E R F GL +L +++ K+V+ A KK+ +
Sbjct: 389 EDVRNDEERQEKFLEGLNDELSYPLMTEDYSDFQKLVDKAIHQEDKYNRMEQKKRRIAHF 448
Query: 3940 SARQVREQ--------------ATXXXXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQD 3803
A+Q Q + I + ST +
Sbjct: 449 KAQQGNNQKPRLTLGPQSMPHGGSSSVVRPQHQFFNNNAGNNIRNQAPRPVAASTQQQPA 508
Query: 3802 KR--------CFRCGQTGHFKNQCP 3752
KR CF CG GH+ ++CP
Sbjct: 509 KREQGSKPVVCFNCGDPGHYADKCP 533
>emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa Japonica Group]
Length = 1779
Score = 989 bits (2557), Expect(2) = 0.0
Identities = 501/904 (55%), Positives = 632/904 (69%), Gaps = 4/904 (0%)
Frame = -3
Query: 3385 AHGA--VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVS 3212
A GA V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP +
Sbjct: 663 AQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQA 722
Query: 3211 SLLQLVCRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IP 3035
LQ + + + FL +LI+L + D+ILGMDWLA + IDC ++ + L
Sbjct: 723 LSLQR-SPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYD 781
Query: 3034 GRAEIVVATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVRE 2858
GR V A S + R+ ++T+ E ++ + DVF D++PG+PP R+
Sbjct: 782 GRVVTVHALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRD 829
Query: 2857 IEFCIELQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKD 2678
IEF I+L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD
Sbjct: 830 IEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKD 889
Query: 2677 GSLRMCIDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQK 2498
+ RMC+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ K
Sbjct: 890 HTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPK 949
Query: 2497 TAFLTRYGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHE 2318
TAF TRYG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHE
Sbjct: 950 TAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHE 1009
Query: 2317 EHLRLVLQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSV 2138
EHLRL L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V
Sbjct: 1010 EHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTV 1069
Query: 2137 AEIRSFLGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVL 1958
+EIRSFLGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L
Sbjct: 1070 SEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPIL 1129
Query: 1957 VIPSPEQSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALK 1778
++P P++ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK
Sbjct: 1130 ILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALK 1189
Query: 1777 VWRHYLYGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXX 1598
+WRHYL+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1190 IWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV--- 1246
Query: 1597 XXXXXXXXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANP 1418
L F+ + F+ AL+ + I +V EAQ +P
Sbjct: 1247 VDALSRKGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDP 1306
Query: 1417 WIQEHRSETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTK 1238
IQE + + VPD +L+ +L EAH + Y++HPG TK
Sbjct: 1307 DIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAVLKEAHDTLYSIHPGSTK 1366
Query: 1237 MYQDLKRQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFI 1058
MYQDLK ++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI
Sbjct: 1367 MYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFI 1426
Query: 1057 VGLPRTRRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDR 878
GLPRT GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDR
Sbjct: 1427 TGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDR 1486
Query: 877 GSAFTSRFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHL 698
GS FTS FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +L
Sbjct: 1487 GSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNL 1546
Query: 697 PLVE 686
P E
Sbjct: 1547 PYAE 1550
Score = 228 bits (582), Expect(2) = 0.0
Identities = 106/218 (48%), Positives = 157/218 (72%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1552 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKVIQERLRVA 1611
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1612 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1671
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1672 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETNER 1729
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1730 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1767
Score = 71.6 bits (174), Expect = 6e-09
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ + AS+ L G A +W++ +
Sbjct: 368 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQDKVSFASHQLHGPASEWWDHFR 427
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 428 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 487
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E F GL +L ++ P K+V+ A +QE + Q + +
Sbjct: 488 EDVRNDEECQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQF 547
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
S P QG G+S+ R ++ F + +NQ P
Sbjct: 548 KTQQGNNQKPRLTLGPQSVP--QG-GSSSVVRPQRQFFNNNAGNNIRNQAP 595
>gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 989 bits (2556), Expect(2) = 0.0
Identities = 505/931 (54%), Positives = 638/931 (68%), Gaps = 2/931 (0%)
Frame = -3
Query: 3472 PAQS-SHRPEEQFQQSEVGQLHAVVPRDHGAHGAVVEGTFLVNLSPARILFDSGASHSFV 3296
PAQS S P + + + V A D V+ GTF VNL PA +LFDSGA+HSF+
Sbjct: 335 PAQSNSTAPASKARVNHVAAAEAQDAPD------VILGTFPVNLVPATVLFDSGATHSFL 388
Query: 3295 SEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLVCRDCEVSLDDLQFLVDLIVLPMAEFD 3116
S F G+ + L PL VSTP + LQ + + + FL +LI+L + D
Sbjct: 389 SMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIEIKGVPFLANLILLESKDLD 447
Query: 3115 LILGMDWLAAYHVSIDCFDKTICLRIPGRAEIVVATSCGNSXXXXXXXXXXXXEPRVQRM 2936
+ILGMDWLA + IDC ++ + L + V S R+ ++
Sbjct: 448 VILGMDWLARHKGVIDCANRKVTLTSNDGQVVTVHALSSESLRS-----------RLNQI 496
Query: 2935 TIAETSVISGFQDVF-DEVPGLPPVREIEFCIELQPGTAPISRAPYRMAPAEMRXXXXXX 2759
T+ E ++ + DVF D++PG+PP R+IEF I+L PGT PI + PYRMA E+
Sbjct: 497 TLEEIPIVREYSDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQV 556
Query: 2758 XXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMCIDYRGLNRVTIRNRYPLPRIDDLFDQL 2579
+G+IR S SPWGAPV+FV+KKD + RMC+DYR LN VTI+N+YPLPRIDDLFDQL
Sbjct: 557 DDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQL 616
Query: 2578 RGATCFSKIDLRSGYHQLRVRASDVQKTAFLTRYGSYEFLVMPFGLTNAPAVFMDLMNRV 2399
+GAT FSKIDLRSGYHQLR++ D+ KTAF TRYG +E VM FGLTNAPA FM+LMN+V
Sbjct: 617 KGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKV 676
Query: 2398 FRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLVLQTLRNHSLYAKFGKCDFWLSEIQFLG 2219
F +LD+FV+VFIDDIL+YSR++ EHEEHLRL L+ LR H LYAKF KC+FWLSE++FLG
Sbjct: 677 FMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLG 736
Query: 2218 HVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSFLGLAGYYRKFIQNFSRIAAPMTGLTRK 2039
HVISA G+AVDP+ VE+V +W+ P +V+EIRSFLGLAGYYR+FI+NFS+IA PMT L +K
Sbjct: 737 HVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQK 796
Query: 2038 GVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPEQSFVVYTDASLMGLGGVLMQNQRVVAY 1859
V ++WS CE++F+ LK +L SAP+L++P+P++ F VY DAS +GLG VLMQ+ +VVAY
Sbjct: 797 DVKYKWSEECEQSFQELKSRLVSAPILILPNPKKGFQVYCDASKLGLGCVLMQDGKVVAY 856
Query: 1858 ASRQLKVHEQNYPTHDLELAAVVFALKVWRHYLYGVQFELFTDHKSLKYLFSQKELNQRQ 1679
ASRQL+ HE+NYPTHDLELAAVV ALK+WRHYL+G + E++TDHKSLKY+F+Q +LN RQ
Sbjct: 857 ASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQ 916
Query: 1678 RRWIEFIKDYEFALQYHPGKANVVXXXXXXXXXXXXXXXXXXXXRDLVTLSSFDFRSRTG 1499
RRW+E IKDY+ + YHPGKANVV L F+ +
Sbjct: 917 RRWLELIKDYDMGIHYHPGKANVV---ADALSRKGYCNATEGRQLPLELCKEFERLNLGI 973
Query: 1498 SCMYFLGALQIQSPWISKVLEAQPANPWIQEHRSETFXXXXXXXXXXXXXXXXXXXXLVV 1319
F+ AL+ + I +V EAQ +P IQE + + V
Sbjct: 974 VSRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICV 1033
Query: 1318 PDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLKRQYWWRGMKRDIAHYVSCCQTCQQVKA 1139
PD +L+ +L EAH + Y++HPG TKMYQDLK ++WW MKR+IA YV+ C CQ+VKA
Sbjct: 1034 PDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKA 1093
Query: 1138 EHQRPAGELQPLPIPEWKWDQISMDFIVGLPRTRRGHDSIWVVVDRLTKSAHFIPVKTTS 959
EHQ+PAG LQPL IPEWKW++I MDFI GLPRT GHDSIWV+VDRLTK AHFIPVKTT
Sbjct: 1094 EHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTY 1153
Query: 958 SVEVLARIYVREIVRLHGVPASIVSDRGSAFTSRFWRSLQSAMGTQLAFSSAYHPQSDGQ 779
S LA +Y+ IV LHGVP IVSDRGS FTS FW+ LQ MG++L FS AYHPQ+DGQ
Sbjct: 1154 SGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSIAYHPQTDGQ 1213
Query: 778 TERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
TERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1214 TERVNQILEDMLRACALDFGGSWDKNLPYAE 1244
Score = 223 bits (567), Expect(2) = 0.0
Identities = 104/218 (47%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1246 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKVIQERLRVA 1305
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ G+ V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1306 QSRHKSYADNRRRDLSFEEGEYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1365
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1366 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETNER 1423
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +P LF
Sbjct: 1424 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPLLF 1461
Score = 73.9 bits (180), Expect = 1e-09
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F +R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 62 EFLHVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 121
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 122 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 181
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L +++ K+V+ A +QE R +++
Sbjct: 182 EDVRNDEERQEKFLEGLNDELSYPLMTGDYSDFQKLVDKAIRQE--DKYNRMEQKKCRIA 239
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T SQ QG G+S+ R ++ F + +NQ P
Sbjct: 240 HFKAQQGNNQKPRLTLGSQSMPQG-GSSSVVRPQRQFFNNNAGNNIRNQAP 289
>gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550058|gb|ABA92855.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1636
Score = 989 bits (2556), Expect(2) = 0.0
Identities = 501/904 (55%), Positives = 632/904 (69%), Gaps = 4/904 (0%)
Frame = -3
Query: 3385 AHGA--VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVS 3212
A GA V+ GTFLVN P +LFDSGA+HSF+S F G+ + L PL VSTP +
Sbjct: 520 AQGAPDVILGTFLVNSVPTTVLFDSGATHSFLSMSFAGNHGMEVEDLIRPLMVSTPSNQA 579
Query: 3211 SLLQLVCRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLRI-P 3035
LQ + + ++ FL +LI+L + D+ILGMDWLA Y IDC ++ + L
Sbjct: 580 LSLQR-SPSVRIEIQEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSND 638
Query: 3034 GRAEIVVATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVRE 2858
GR V A S + R+ +MT+ E ++ + DVF D++PG+PP R+
Sbjct: 639 GRVVTVHALSSES------------LRSRLNQMTLEEIPIVREYPDVFPDDLPGMPPKRD 686
Query: 2857 IEFCIELQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKD 2678
IEF I+L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD
Sbjct: 687 IEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKD 746
Query: 2677 GSLRMCIDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQK 2498
+ RMC+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ K
Sbjct: 747 HTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPK 806
Query: 2497 TAFLTRYGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHE 2318
TAF+TRYG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHE
Sbjct: 807 TAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHE 866
Query: 2317 EHLRLVLQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSV 2138
EHLRL L+ LR H LYAKF KC+FWL E++FLGHVISA G+AVDP+ VE+V +W+ P +V
Sbjct: 867 EHLRLALEKLREHQLYAKFSKCEFWLFEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTV 926
Query: 2137 AEIRSFLGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVL 1958
+EIRSFLGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L
Sbjct: 927 SEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLISAPIL 986
Query: 1957 VIPSPEQSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALK 1778
++P P++ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+N PTHDLELAAVV ALK
Sbjct: 987 ILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNNPTHDLELAAVVHALK 1046
Query: 1777 VWRHYLYGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXX 1598
+WRHYL+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1047 IWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV--- 1103
Query: 1597 XXXXXXXXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANP 1418
L F+ + F+ AL+ + I +V EAQ +P
Sbjct: 1104 ANALSRKGYCNATEGRQLPLELCKEFERLNLGIVSRGFVAALEAKPTLIDQVREAQINDP 1163
Query: 1417 WIQEHRSETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTK 1238
IQE + + VPD +L+ +L EAH + Y++HPG TK
Sbjct: 1164 DIQEIKKNMRRGKAISFLEDEQGTVWLGKRICVPDNKDLKDAILKEAHDTLYSIHPGSTK 1223
Query: 1237 MYQDLKRQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFI 1058
MYQDLK ++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI
Sbjct: 1224 MYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFI 1283
Query: 1057 VGLPRTRRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDR 878
GLPRT GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDR
Sbjct: 1284 TGLPRTSLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDR 1343
Query: 877 GSAFTSRFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHL 698
GS FTS+FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +L
Sbjct: 1344 GSQFTSKFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNL 1403
Query: 697 PLVE 686
P E
Sbjct: 1404 PYAE 1407
Score = 227 bits (579), Expect(2) = 0.0
Identities = 105/218 (48%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1409 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1468
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F GD V L+V+P++GV RF GKLAPRF+GP++I+ R G V+
Sbjct: 1469 QSRHKSYADNRRRDLSFDEGDYVYLRVTPLRGVHRFHTNGKLAPRFVGPYKIVSRRGEVA 1528
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AG+HNVFHVS L++ LR + A+ ++++ D T E P+RIL + +
Sbjct: 1529 YQLELPQSLAGIHNVFHVSQLKKCLRVPTEE--ANLEQIEVQEDLTYVEKPIRILKIDER 1586
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1587 RTRNRVIHFCKVQWSNHSEEESTWEREDELKSAHPHLF 1624
Score = 78.2 bits (191), Expect = 7e-11
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A KW++ +
Sbjct: 225 EFIRVRPPTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASKWWDHFR 284
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG TV+ Y F L R+
Sbjct: 285 LNRTTAEPITWLEFTAAFRKTHIPSGAVSLKKKEFRSLTQGSRTVTEYLHEFNRLARYAP 344
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQE 3953
+ T+E R F GL +L +++ K+V+ A +QE
Sbjct: 345 EDVRTDEERQERFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQE 388
>gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 988 bits (2554), Expect(2) = 0.0
Identities = 498/898 (55%), Positives = 628/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 363 VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 421
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC +K + L GR V
Sbjct: 422 SPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANKKVTLNSYDGRVVTV 481
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 482 HALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 529
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 530 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 589
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 590 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 649
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 650 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 709
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 710 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 769
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE +F+ LK +L SAP+L++P P+
Sbjct: 770 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECERSFQELKSRLISAPILILPDPK 829
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+WRHYL
Sbjct: 830 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 889
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 890 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 946
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQ+ +
Sbjct: 947 KGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDPDIQKIK 1006
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1007 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1066
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1067 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1126
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1127 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1186
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1187 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1244
Score = 228 bits (581), Expect(2) = 0.0
Identities = 106/218 (48%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1246 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1305
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P +GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1306 QSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHRFRTKGKLAPRFVGPYKIVSRRGEVA 1365
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1366 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETSER 1423
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1424 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1461
Score = 80.5 bits (197), Expect = 1e-11
Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 4/234 (1%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYESQF 4262
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ F
Sbjct: 62 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWD-HF 120
Query: 4261 TLEERRTVD----WEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCR 4094
L RT D W EF F ++ + + K+ E +L QG +V+ Y F L R
Sbjct: 121 RL--NRTTDEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLAR 178
Query: 4093 FTSDLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQA 3914
+ + +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 179 YAPEDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKR 236
Query: 3913 TXXXXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T QP SQG G+S+ R ++ F + +NQ P
Sbjct: 237 RIAQFKTQQGNNQKPRLTLGPQPMSQG-GSSSVVRPQRQFFNNNAGNNIRNQAP 289
>gb|ABF96299.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1822
Score = 987 bits (2552), Expect(2) = 0.0
Identities = 500/904 (55%), Positives = 631/904 (69%), Gaps = 4/904 (0%)
Frame = -3
Query: 3385 AHGA--VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVS 3212
A GA V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP +
Sbjct: 706 AQGAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQA 765
Query: 3211 SLLQLVCRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IP 3035
LQ + + + FL +LI+L + D+ILGMDWLA + IDC +K + L
Sbjct: 766 LSLQR-SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANKKVTLTSYD 824
Query: 3034 GRAEIVVATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVRE 2858
GR V A S + R+ ++T+ E ++ + DVF D++PG+PP R+
Sbjct: 825 GRVVTVHALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRD 872
Query: 2857 IEFCIELQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKD 2678
IEF I+L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD
Sbjct: 873 IEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKD 932
Query: 2677 GSLRMCIDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQK 2498
+ RMC+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ K
Sbjct: 933 HTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPK 992
Query: 2497 TAFLTRYGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHE 2318
T+F TRYG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHE
Sbjct: 993 TSFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHE 1052
Query: 2317 EHLRLVLQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSV 2138
EHLRL L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V
Sbjct: 1053 EHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTV 1112
Query: 2137 AEIRSFLGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVL 1958
+EIRSFLGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L
Sbjct: 1113 SEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPIL 1172
Query: 1957 VIPSPEQSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALK 1778
++P P++ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK
Sbjct: 1173 ILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALK 1232
Query: 1777 VWRHYLYGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXX 1598
+WRHYL+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1233 IWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV--- 1289
Query: 1597 XXXXXXXXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANP 1418
L F+ + F+ AL+ + I +V EAQ +P
Sbjct: 1290 VDALSGKGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDP 1349
Query: 1417 WIQEHRSETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTK 1238
IQE + + VPD +L+ +L EAH + Y++HPG TK
Sbjct: 1350 DIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAVLKEAHDTLYSIHPGSTK 1409
Query: 1237 MYQDLKRQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFI 1058
MYQDLK ++WW MKR+I YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI
Sbjct: 1410 MYQDLKERFWWASMKREIVEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFI 1469
Query: 1057 VGLPRTRRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDR 878
GLPRT GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDR
Sbjct: 1470 TGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDR 1529
Query: 877 GSAFTSRFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHL 698
GS FTS FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +L
Sbjct: 1530 GSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNL 1589
Query: 697 PLVE 686
P E
Sbjct: 1590 PYAE 1593
Score = 229 bits (585), Expect(2) = 0.0
Identities = 106/218 (48%), Positives = 158/218 (72%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1595 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKVIQERLRVA 1654
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1655 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1714
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T+ E P+RIL +
Sbjct: 1715 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTSVEKPIRILETNER 1772
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1773 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1810
Score = 75.1 bits (183), Expect = 6e-10
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ + AS+ L G A +W++ +
Sbjct: 411 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQDKVSFASHQLHGPASEWWDHFR 470
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 471 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 530
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE + Q + +
Sbjct: 531 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAVRQEDKYNRMEQKKRRIAQF 590
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
S P QG G+S+ R ++ F + +NQ P
Sbjct: 591 KTQQGNNQKPRLTLGPQSVP--QG-GSSSVVRPQRQFFNNNAGNNIRNQAP 638
>gb|AAN09852.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1715
Score = 987 bits (2551), Expect(2) = 0.0
Identities = 496/898 (55%), Positives = 628/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ G FLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 605 VILGMFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQR- 663
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 664 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTV 723
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 724 HALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 771
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 772 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 831
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 832 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 891
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 892 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 951
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGH+ISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 952 LEKLREHQLYAKFSKCEFWLSEVKFLGHIISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 1011
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 1012 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPK 1071
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+WRHYL
Sbjct: 1072 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 1131
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1132 FGTRTEVYTDHKSLKYIFTQSDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 1188
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1189 KGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1248
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1249 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1308
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1309 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1368
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1369 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1428
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1429 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1486
Score = 229 bits (583), Expect(2) = 0.0
Identities = 106/218 (48%), Positives = 157/218 (72%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1488 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1547
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1548 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1607
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1608 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETNER 1665
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1666 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1703
Score = 75.9 bits (185), Expect = 3e-10
Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 38/268 (14%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 304 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 363
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 364 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLARYAP 423
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 424 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKRRIA 481
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKR------------------------ 3797
T QP QG G+S+ R ++
Sbjct: 482 QFKTQQGNNQKPRLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNLAPRPVAVPAQQ 540
Query: 3796 -------------CFRCGQTGHFKNQCP 3752
CF CG GH+ ++CP
Sbjct: 541 QPAKREQGNKPVVCFNCGDPGHYADKCP 568
>gb|ABG65971.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 987 bits (2551), Expect(2) = 0.0
Identities = 496/898 (55%), Positives = 628/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ G FLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 365 VILGMFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQR- 423
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 424 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTV 483
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 484 HALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 531
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 532 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 591
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 592 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 651
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 652 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 711
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGH+ISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 712 LEKLREHQLYAKFSKCEFWLSEVKFLGHIISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 771
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 772 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPK 831
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+WRHYL
Sbjct: 832 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 891
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 892 FGTRTEVYTDHKSLKYIFTQSDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 948
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 949 KGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1008
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1009 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1068
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1069 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1128
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1129 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1188
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1189 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1246
Score = 229 bits (583), Expect(2) = 0.0
Identities = 106/218 (48%), Positives = 157/218 (72%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1248 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1307
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1308 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1367
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1368 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETNER 1425
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1426 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1463
Score = 75.9 bits (185), Expect = 3e-10
Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 38/268 (14%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 64 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 123
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 124 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLARYAP 183
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 184 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKRRIA 241
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKR------------------------ 3797
T QP QG G+S+ R ++
Sbjct: 242 QFKTQQGNNQKPRLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNLAPRPVAVPAQQ 300
Query: 3796 -------------CFRCGQTGHFKNQCP 3752
CF CG GH+ ++CP
Sbjct: 301 QPAKREQGNKPVVCFNCGDPGHYADKCP 328
>dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1475
Score = 986 bits (2550), Expect(2) = 0.0
Identities = 495/897 (55%), Positives = 624/897 (69%), Gaps = 1/897 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTF VN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 365 VILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 423
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLRIPGRAEIVV 3014
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L
Sbjct: 424 SPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTL---------- 473
Query: 3013 ATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIEL 2837
TS R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+L
Sbjct: 474 -TSNDGQVVTVHALSTESLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDL 532
Query: 2836 QPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMCI 2657
PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC+
Sbjct: 533 VPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCV 592
Query: 2656 DYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTRY 2477
DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TRY
Sbjct: 593 DYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRY 652
Query: 2476 GSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLVL 2297
G +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL L
Sbjct: 653 GLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLAL 712
Query: 2296 QTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSFL 2117
+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSFL
Sbjct: 713 EKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFL 772
Query: 2116 GLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPEQ 1937
GLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P++
Sbjct: 773 GLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLVSAPILILPDPKK 832
Query: 1936 SFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYLY 1757
F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHDLELAAVV ALK+WRHYL+
Sbjct: 833 GFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLF 892
Query: 1756 GVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXXX 1577
G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 893 GTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSRK 949
Query: 1576 XXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHRS 1397
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 950 GYCNATEGRQLPLELCKEFERLNLGIVSRGFVAALEAKPTLIDQVREAQINDPDIQEIKK 1009
Query: 1396 ETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLKR 1217
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1010 NMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKE 1069
Query: 1216 QYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRTR 1037
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1070 RFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTS 1129
Query: 1036 RGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTSR 857
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1130 SGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSN 1189
Query: 856 FWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1190 FWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1246
Score = 224 bits (571), Expect(2) = 0.0
Identities = 104/218 (47%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++R E++ +I+ R+ A
Sbjct: 1248 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILRGAEEKVKIIQERLRVA 1307
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1308 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1367
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVH+VFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1368 YQLELPQSLAGVHDVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETSER 1425
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1426 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1463
Score = 77.8 bits (190), Expect = 9e-11
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 64 EFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 123
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 124 LNRTTAEPITWLEFAAAFRKTHIPSGVMSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 183
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE + Q + +
Sbjct: 184 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNFMEQKKRRMAQF 243
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
F S P G+S+ R ++ F + +NQ P
Sbjct: 244 KAQQGSNQKPRLTFGPQSMPHG---GSSSVVRPQRQFFNNNVGNNIRNQAP 291
>gb|AAM93458.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430677|gb|AAP52558.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1406
Score = 986 bits (2549), Expect(2) = 0.0
Identities = 497/898 (55%), Positives = 627/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 296 VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 354
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 355 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTV 414
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 415 HALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 462
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 463 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 522
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 523 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 582
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YS+++ EHEEHLRL
Sbjct: 583 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQTKEEHEEHLRLA 642
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 643 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 702
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE +F+ LK +L SAP+L++P P+
Sbjct: 703 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECERSFQELKSRLISAPILILPDPK 762
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+WRHYL
Sbjct: 763 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 822
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 823 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 879
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 880 KGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDPDIQEIK 939
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 940 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 999
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1000 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1059
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1060 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1119
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1120 NFWEKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1177
Score = 224 bits (571), Expect(2) = 0.0
Identities = 105/218 (48%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1179 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1238
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1239 QSRYKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYKIVSRRGEVA 1298
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1299 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIDQIEVQEDLTYVEKPIRILETNER 1356
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +P LF
Sbjct: 1357 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPLLF 1394
Score = 62.8 bits (151), Expect = 3e-06
Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 1/213 (0%)
Frame = -3
Query: 4387 ADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-QFTLEERRTVDWEEFVRRF 4211
A +W I++ L LL E AS+ L G A +W++ + + W EF F
Sbjct: 13 ASDWLHAIEKKLDLLPCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPITWLEFTAAF 72
Query: 4210 DLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTSDLYATEERRARMFERGLR 4031
++ + + K+ E +L QG +V+ Y F L R+ + +E R F GL
Sbjct: 73 RKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLN 132
Query: 4030 PQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXXXXXXXXXXXXXXPFTQIS 3851
+L ++ P K+V+ A +QE + Q + + S
Sbjct: 133 DELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKSRLTLGPQS 192
Query: 3850 QPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
P QG G+S+ R ++ F + +NQ P
Sbjct: 193 MP--QG-GSSSVVRPQRQFFNNNAGNNIRNQAP 222
>gb|AAS98511.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1678
Score = 986 bits (2549), Expect(2) = 0.0
Identities = 498/898 (55%), Positives = 625/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 568 VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 626
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 627 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTV 686
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 687 HALSS------------EFLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 734
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 735 LVPGTTPIHTRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 794
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 795 VDYRALNDVTIKNEYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 854
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 855 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 914
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 915 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 974
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 975 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPK 1034
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS GLG VLMQ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+WRHYL
Sbjct: 1035 KGFQVYCDASKFGLGCVLMQEGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 1094
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1095 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 1151
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1152 KGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1211
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ + VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1212 KKMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1271
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1272 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1331
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1332 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1391
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1392 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1449
Score = 226 bits (576), Expect(2) = 0.0
Identities = 105/217 (48%), Positives = 156/217 (71%)
Frame = -2
Query: 680 YNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTAQ 501
YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ AQ
Sbjct: 1452 YNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQ 1511
Query: 500 SRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVSY 321
SR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+Y
Sbjct: 1512 SRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAY 1571
Query: 320 RLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETKR 141
+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +R
Sbjct: 1572 QLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETSERR 1629
Query: 140 LRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R ++I KVQWS EE++WERED+++ +P+LF
Sbjct: 1630 TRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1666
Score = 77.4 bits (189), Expect = 1e-10
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 267 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 326
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 327 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLARYAP 386
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 387 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKRRIA 444
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T QP QG G+S+ R ++ F + +NQ P
Sbjct: 445 QFKTQQGNNQKPRLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNQAP 494
>emb|CAE04935.2| OSJNBa0017P10.12 [Oryza sativa Japonica Group]
gi|38567639|emb|CAE75877.1| B1234D02.1 [Oryza sativa
Japonica Group]
Length = 1742
Score = 986 bits (2548), Expect(2) = 0.0
Identities = 498/898 (55%), Positives = 629/898 (70%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S FV G+ + L PL VSTP + LQ
Sbjct: 632 VILGTFLVNSVPAIVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQR- 690
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 691 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTV 750
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 751 PALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 798
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 799 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 858
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 859 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 918
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 919 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 978
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF K +FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 979 LEKLREHQLYAKFSKREFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 1038
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 1039 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPK 1098
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+WRHYL
Sbjct: 1099 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 1158
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1159 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 1215
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1216 KGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1275
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1276 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1335
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1336 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1395
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1396 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1455
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1456 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1513
Score = 227 bits (579), Expect(2) = 0.0
Identities = 105/218 (48%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1515 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1574
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P +GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1575 QSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1634
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFH+S L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1635 YQLELPQSLAGVHNVFHLSQLKKCLRVPTEE--ANLDQIEVQEDLTYVEKPIRILESNER 1692
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1693 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1730
Score = 77.0 bits (188), Expect = 2e-10
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 331 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 390
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 391 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLSQGTRSVTEYLHEFNRLARYAP 450
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 451 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKRRIA 508
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T QP QG G+S+ R ++ F + +NQ P
Sbjct: 509 QFKTQQGNNQKPRLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNQAP 558
>emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa Japonica Group]
Length = 1634
Score = 986 bits (2548), Expect(2) = 0.0
Identities = 498/898 (55%), Positives = 627/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S FV G+ + L PL VSTP + LQ
Sbjct: 600 VILGTFLVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQR- 658
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC +K + L GR V
Sbjct: 659 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTV 718
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E S++ + DVF D++PG+PP R+IEF I+
Sbjct: 719 HALSSES------------LRSRLNQITLEEISIVREYPDVFPDDLPGMPPKRDIEFRID 766
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 767 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 826
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 827 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 886
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FG TNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 887 YGLFECTVMSFGFTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 946
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+ VDP+ VE+V +W+ P +V+EIRSF
Sbjct: 947 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVTVDPSNVESVTNWKQPKTVSEIRSF 1006
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 1007 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPK 1066
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+WRHYL
Sbjct: 1067 KGFQVYCDASKLGLGCVLMQDGNVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYL 1126
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + HPGKANVV
Sbjct: 1127 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHDHPGKANVV---ADALSR 1183
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1184 KGYCNATEGRQLPLELCKEFERLNLGIVGRGFIAALEAKPTLIDQVREAQINDPDIQEIK 1243
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1244 KNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAVLKEAHDTLYSIHPGSTKMYQDLK 1303
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1304 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1363
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1364 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1423
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1424 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1481
Score = 170 bits (430), Expect(2) = 0.0
Identities = 76/143 (53%), Positives = 111/143 (77%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MA +EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1483 SYNNSYQASLQMASYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1542
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1543 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1602
Query: 323 YRLQLPESMAGVHNVFHVSILRR 255
Y+L+LP+S+AGVHNVFHVS L++
Sbjct: 1603 YQLELPQSLAGVHNVFHVSQLKK 1625
Score = 76.3 bits (186), Expect = 3e-10
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 299 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 358
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 359 LNRTTAEPIIWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 418
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 419 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKRRIA 476
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T QP QG G+S+ R ++ F + +NQ P
Sbjct: 477 QFKTQQGNNQKPHLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNQGP 526
>gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287634|gb|AAV31378.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1400
Score = 985 bits (2546), Expect(2) = 0.0
Identities = 506/932 (54%), Positives = 639/932 (68%), Gaps = 3/932 (0%)
Frame = -3
Query: 3472 PAQS-SHRPEEQFQQSEVGQLHAVVPRDHGAHGAVVEGTFLVNLSPARILFDSGASHSFV 3296
PAQS S P + + + V A D V+ GTF VN PA +LFDSGA+HSF+
Sbjct: 335 PAQSNSTAPASKARVNHVAAAEAQDAPD------VILGTFSVNSVPATVLFDSGATHSFL 388
Query: 3295 SEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLVCRDCEVSLDDLQFLVDLIVLPMAEFD 3116
S F G+ + L PL VSTP + LQ + + + FL +LI+L + D
Sbjct: 389 SMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR-SPSVRIEIQGVPFLANLILLESKDLD 447
Query: 3115 LILGMDWLAAYHVSIDCFDKTICL-RIPGRAEIVVATSCGNSXXXXXXXXXXXXEPRVQR 2939
+ILGMDWLA + IDC ++ + L GR V A S + R+ +
Sbjct: 448 VILGMDWLARHKGVIDCANRKVTLISNDGRVVTVHALSSES------------LRSRLNQ 495
Query: 2938 MTIAETSVISGFQDVF-DEVPGLPPVREIEFCIELQPGTAPISRAPYRMAPAEMRXXXXX 2762
+T+ E ++ + DVF D++PG+PP R+IEF I+L PGT PI + PYRMA E+
Sbjct: 496 ITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQ 555
Query: 2761 XXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMCIDYRGLNRVTIRNRYPLPRIDDLFDQ 2582
+G+IR S SPWGAPV+FV+KKD + RMC+DYR LN VTI+N+YPLPRIDDLFDQ
Sbjct: 556 VDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQ 615
Query: 2581 LRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTRYGSYEFLVMPFGLTNAPAVFMDLMNR 2402
L+GAT FSKIDLRSGYHQLR++ D+ KTAF TRYG +E VM FGLTNAPA FM+LMN+
Sbjct: 616 LKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNK 675
Query: 2401 VFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLVLQTLRNHSLYAKFGKCDFWLSEIQFL 2222
VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL L+ LR H LYAKF KC+FWLSE++FL
Sbjct: 676 VFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFL 735
Query: 2221 GHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSFLGLAGYYRKFIQNFSRIAAPMTGLTR 2042
GHVISA G+AVDP+ VE+V +W+ P +V+EIRSFLGLAGYYR+FI+NFS+IA PMT L +
Sbjct: 736 GHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQ 795
Query: 2041 KGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPEQSFVVYTDASLMGLGGVLMQNQRVVA 1862
K V ++WS CE++F+ LK +L SAP+L++P P++ F VY DAS +GLG VLMQ+ +VVA
Sbjct: 796 KDVKYKWSEECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVA 855
Query: 1861 YASRQLKVHEQNYPTHDLELAAVVFALKVWRHYLYGVQFELFTDHKSLKYLFSQKELNQR 1682
YASRQL+ HE+NYPTHDLELAAVV ALK+WRHYL+G + E++TDHKSLKY+F+Q +LN R
Sbjct: 856 YASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMR 915
Query: 1681 QRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXXXXXXXXXXXXXRDLVTLSSFDFRSRT 1502
QRRW+E IKDY+ + YHPGKANVV L F+ +
Sbjct: 916 QRRWLELIKDYDMGIHYHPGKANVV---ADALSRKGYCNATEGRQLPLELCQEFERLNLG 972
Query: 1501 GSCMYFLGALQIQSPWISKVLEAQPANPWIQEHRSETFXXXXXXXXXXXXXXXXXXXXLV 1322
F+ AL+ + I +V EAQ +P IQE + +
Sbjct: 973 IVSRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERIC 1032
Query: 1321 VPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLKRQYWWRGMKRDIAHYVSCCQTCQQVK 1142
VPD +L+ +L EAH + Y++HPG TKMYQDLK ++WW MKR+IA YV+ C CQ+VK
Sbjct: 1033 VPDNKDLKDVILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVK 1092
Query: 1141 AEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRTRRGHDSIWVVVDRLTKSAHFIPVKTT 962
AEHQ+PAG LQPL IPEWKW++I MDFI GLPRT GHDSIWV+VDRLTK AHFIPVKTT
Sbjct: 1093 AEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTT 1152
Query: 961 SSVEVLARIYVREIVRLHGVPASIVSDRGSAFTSRFWRSLQSAMGTQLAFSSAYHPQSDG 782
S LA +Y+ IV HGVP IVSDRGS FTS FW+ LQ MG++L FS+AYHPQ+DG
Sbjct: 1153 YSGSRLAELYMARIVCSHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDG 1212
Query: 781 QTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
QTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1213 QTERVNQILEDMLRACALDFGGSWDKNLPYAE 1244
Score = 175 bits (444), Expect(2) = 0.0
Identities = 80/146 (54%), Positives = 113/146 (77%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ++I MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1246 SYNNSYQASIQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1305
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P +GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1306 QSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1365
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLR 246
Y+L+LP+S+AGVHNVFHVS L++ LR
Sbjct: 1366 YQLELPQSLAGVHNVFHVSQLKKCLR 1391
Score = 73.9 bits (180), Expect = 1e-09
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 62 EFLRVRPPVFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 121
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 122 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 181
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L +++ K+++ A +QE + Q + +
Sbjct: 182 EDVRNDEERQEKFLEGLNDELSYPLMTGDYSDFQKLMDKAIRQEDKYNRMEQKKRRIAHF 241
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
S P QG G+S+ R ++ F + +NQ P
Sbjct: 242 KAQQGSNQKPRLTLGPQSMP--QG-GSSSVVRPQRQFFNNNAGNNIRNQAP 289
>emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]
Length = 1472
Score = 985 bits (2546), Expect(2) = 0.0
Identities = 507/938 (54%), Positives = 640/938 (68%), Gaps = 3/938 (0%)
Frame = -3
Query: 3490 HRQGKEPAQSSHR-PEEQFQQSEVGQLHAVVPRDHGAHGAVVEGTFLVNLSPARILFDSG 3314
HR PAQS+ P + + + V A D V+ GTFL+N PA +LFDSG
Sbjct: 328 HRVKVVPAQSNSTVPASKARVNHVAAAEAQDAPD------VILGTFLINSVPATVLFDSG 381
Query: 3313 ASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLVCRDCEVSLDDLQFLVDLIVL 3134
A+HSF+S F G+ + L P VSTP + LQ + + + FL +LI+L
Sbjct: 382 ATHSFLSMSFAGNHGMEVEDLRCPWMVSTPSNQALSLQR-SPSVRIEIKGVPFLANLILL 440
Query: 3133 PMAEFDLILGMDWLAAYHVSIDCFDKTICLRI-PGRAEIVVATSCGNSXXXXXXXXXXXX 2957
+ D+ILGMDWLA + IDC ++ + L GR V A S +
Sbjct: 441 ESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES------------L 488
Query: 2956 EPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIELQPGTAPISRAPYRMAPAEM 2780
R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+L PGT PI + PYRMA E+
Sbjct: 489 RSRLNQITLEEIPIVREYSDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANEL 548
Query: 2779 RXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMCIDYRGLNRVTIRNRYPLPRI 2600
+G+IR S SPWGAPV+FV+KKD + RMC+DYR LN VTI+N+YPLPRI
Sbjct: 549 AEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRI 608
Query: 2599 DDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTRYGSYEFLVMPFGLTNAPAVF 2420
DDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TRYG +E VM FGLTNAPA F
Sbjct: 609 DDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFF 668
Query: 2419 MDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLVLQTLRNHSLYAKFGKCDFWL 2240
M+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL L+ LR H LYAKF KC+FWL
Sbjct: 669 MNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWL 728
Query: 2239 SEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSFLGLAGYYRKFIQNFSRIAAP 2060
SE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSFLGLAGYYR+FI+NFS+IA P
Sbjct: 729 SEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKP 788
Query: 2059 MTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPEQSFVVYTDASLMGLGGVLMQ 1880
MT L +K V ++WS CE+ F+ LK +L SAP+L++P P++ F VY DAS +GLG VLMQ
Sbjct: 789 MTRLLQKDVKYKWSEECEQIFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQ 848
Query: 1879 NQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYLYGVQFELFTDHKSLKYLFSQ 1700
+ +VVAYASRQL+ HE+NYPTHDLELAAVV ALK+WRHYL+G + E++TDHKSLKY+F+Q
Sbjct: 849 DWKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEMYTDHKSLKYIFTQ 908
Query: 1699 KELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXXXXXXXXXXXXXRDLVTLSSF 1520
+LN RQRRW+E IKDY+ + YHPGKANVV L F
Sbjct: 909 PDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADAPSRKGYCNATEGRQLPLELCKEF 965
Query: 1519 DFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHRSETFXXXXXXXXXXXXXXXX 1340
+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 966 ERLNLGIVNRGFVVALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVW 1025
Query: 1339 XXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLKRQYWWRGMKRDIAHYVSCCQ 1160
+ VPD +L+ +L EA + Y++HPG TKMYQDLK ++WW MKR+IA YV+ C
Sbjct: 1026 LGERICVPDNKDLKDAILKEARDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCD 1085
Query: 1159 TCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRTRRGHDSIWVVVDRLTKSAHF 980
CQQVKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT GHDSIWV+VDRLTK AHF
Sbjct: 1086 VCQQVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHF 1145
Query: 979 IPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTSRFWRSLQSAMGTQLAFSSAY 800
IPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS FW+ LQ MG++L FS+AY
Sbjct: 1146 IPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAY 1205
Query: 799 HPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
HPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1206 HPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1243
Score = 224 bits (570), Expect(2) = 0.0
Identities = 104/218 (47%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1245 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1304
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1305 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIISRRGEVA 1364
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1365 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANLEQIEVQEDLTYVEKPIRILEINER 1422
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WE ED+++ +P+LF
Sbjct: 1423 RTRNRVIRFCKVQWSNHSEEESTWEPEDELKSAHPYLF 1460
Score = 80.5 bits (197), Expect = 1e-11
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 61 EFLRVRPPIFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 120
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 121 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 180
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L +++ P K+V+ A +QE + R +++
Sbjct: 181 EDVRNDEERQEKFLEGLNDELSYPLMTGDYPDFQKLVDKAIRQE--DKNNRMEQKKRRIA 238
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T QP QG G+S+ R ++ F + +NQ P
Sbjct: 239 HFKAQQGSNQKPRLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNQAP 288
>gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2174
Score = 984 bits (2544), Expect(2) = 0.0
Identities = 495/898 (55%), Positives = 627/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 1064 VILGTFLVNSVPATVLFDSGATHSFLSTSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 1122
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLR-IPGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA + IDC ++ + L GR V
Sbjct: 1123 SPSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTV 1182
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 1183 HALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 1230
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 1231 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 1290
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KT F TR
Sbjct: 1291 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTTFTTR 1350
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 1351 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 1410
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 1411 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 1470
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 1471 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILILPDPK 1530
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F V+ DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHD+ELAAVV ALK+W HYL
Sbjct: 1531 KGFQVHCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWHHYL 1590
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1591 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 1647
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1648 KGYCNATEGRQLPLELCKEFERLNLGIVDRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1707
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1708 KNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1767
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1768 ERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1827
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1828 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1887
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1888 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1945
Score = 229 bits (583), Expect(2) = 0.0
Identities = 106/218 (48%), Positives = 157/218 (72%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1947 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 2006
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 2007 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 2066
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 2067 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETSER 2124
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 2125 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 2162
Score = 80.5 bits (197), Expect = 1e-11
Identities = 62/269 (23%), Positives = 105/269 (39%), Gaps = 40/269 (14%)
Frame = -3
Query: 4438 FQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-QF 4262
F R+R P F +++P+ A +W +++ L L++ E AS+ L G A +W++ +
Sbjct: 70 FLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ 129
Query: 4261 TLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTSD 4082
E + W+EF F ++ + A K+ E L QG +V+ Y L R+ +
Sbjct: 130 GRAEGELITWQEFTTAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDVNRLARYAPE 189
Query: 4081 LYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAA------------KKQEVISDS 3938
T+E R F GL +L ++S ++V+ A KK+
Sbjct: 190 DVRTDEERQEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFK 249
Query: 3937 ARQVREQATXXXXXXXXXXXXXXPFTQISQPGSQGKGTSTGSR-QDKR------------ 3797
A+Q Q + + +P Q +TG+R D R
Sbjct: 250 AQQGSNQRPRLVTGPQAPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVARPAATPAQ 309
Query: 3796 --------------CFRCGQTGHFKNQCP 3752
CF CG GH+ ++CP
Sbjct: 310 NQPVRKEQGSKPVICFNCGDPGHYADKCP 338
Score = 77.4 bits (189), Expect = 1e-10
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I++ L LL+ E AS+ L G A +W++ +
Sbjct: 763 EFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 822
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 823 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLARYAP 882
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L ++ P K+V+ A +QE R +++
Sbjct: 883 EDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE--DKYNRMEQKKRRIA 940
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
T QP QG G+S+ R ++ F + +NQ P
Sbjct: 941 QFKTQQGNNQKPRLTLGPQPMPQG-GSSSVVRPQRQFFNNNAGNNIRNQAP 990
>dbj|BAH79971.1| hypothetical protein [Oryza sativa Indica Group]
Length = 1477
Score = 984 bits (2544), Expect(2) = 0.0
Identities = 496/898 (55%), Positives = 626/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
++ GTF VN PA +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 367 MILGTFPVNSVPATVLFDSGATHSFLSLSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 425
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLRI-PGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWL + IDC +K + L GR V
Sbjct: 426 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLTRHKGVIDCANKKVTLTSNDGRVVTV 485
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S + R+ ++T+ E ++ + DVF D++PG+PP R+IEF I+
Sbjct: 486 QALSSES------------LRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 533
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 534 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 593
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 594 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 653
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA FM+LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHLRL
Sbjct: 654 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLA 713
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+AVDP+ VE+V +W+ P +V+EIRSF
Sbjct: 714 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSF 773
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L +K V ++WS CE++F+ LK +L SAP+L++P P+
Sbjct: 774 LGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSQECEQSFQELKSRLVSAPILILPDPK 833
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQ+ +VVAYASRQL+ HE+NYPTHDLELAAVV ALK+WRHYL
Sbjct: 834 KGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYL 893
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 894 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 950
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
+ F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 951 KGYCNVTEGRQLPMELCKEFERLNLGIISRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1010
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1011 KNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLK 1070
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR IA YV+ C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1071 ERFWWASMKRKIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1130
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1131 SSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1190
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1191 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1248
Score = 226 bits (575), Expect(2) = 0.0
Identities = 105/218 (48%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1250 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1309
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD RRR L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1310 QSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFRTKGKLAPRFVGPYKIVSRRGEVA 1369
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNV HVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1370 YQLELPQSLAGVHNVSHVSQLKKCLRVPTEE--ANIEQIEVQEDLTYVEKPIRILETSER 1427
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1428 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1465
Score = 76.6 bits (187), Expect = 2e-10
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 3/233 (1%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYESQF 4262
+F R+R P F +S+P+ A +W I++ L LL+ E AS+ L G A +W++ F
Sbjct: 65 EFLRVRPPVFSSTSNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWD-HF 123
Query: 4261 TLEERRTVD---WEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRF 4091
L R T + W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 124 RL-NRTTAEPTTWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARY 182
Query: 4090 TSDLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQAT 3911
+ +E R F GL +L ++ P K+V+ A +QE + Q + +
Sbjct: 183 APEDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNFMEQKKRRIA 242
Query: 3910 XXXXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
S P QG G+S+ R ++ F + +NQ P
Sbjct: 243 QFKAQQGNNQKPRLTLGPQSMP--QG-GSSSVVRPQRQFFNNNAGNNIRNQAP 292
>gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1751
Score = 984 bits (2543), Expect(2) = 0.0
Identities = 497/898 (55%), Positives = 623/898 (69%), Gaps = 2/898 (0%)
Frame = -3
Query: 3373 VVEGTFLVNLSPARILFDSGASHSFVSEGFVSRQGLLCDTLDSPLTVSTPLGVSSLLQLV 3194
V+ GTFLVN A +LFDSGA+HSF+S F G+ + L PL VSTP + LQ
Sbjct: 641 VILGTFLVNSVHATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR- 699
Query: 3193 CRDCEVSLDDLQFLVDLIVLPMAEFDLILGMDWLAAYHVSIDCFDKTICLRI-PGRAEIV 3017
+ + + FL +LI+L + D+ILGMDWLA Y IDC ++ + L GR V
Sbjct: 700 SPSVRIEIQGIPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTV 759
Query: 3016 VATSCGNSXXXXXXXXXXXXEPRVQRMTIAETSVISGFQDVF-DEVPGLPPVREIEFCIE 2840
A S R+ ++T+ E V+ + DVF D++PG+PP R+IEF I+
Sbjct: 760 HALSSET------------LRSRLNQITLEEIPVVREYSDVFPDDLPGMPPKRDIEFRID 807
Query: 2839 LQPGTAPISRAPYRMAPAEMRXXXXXXXXXXXQGFIRRSHSPWGAPVLFVKKKDGSLRMC 2660
L PGT PI + PYRMA E+ +G+IR S SPWGAPV+FV+KKD + RMC
Sbjct: 808 LVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 867
Query: 2659 IDYRGLNRVTIRNRYPLPRIDDLFDQLRGATCFSKIDLRSGYHQLRVRASDVQKTAFLTR 2480
+DYR LN VTI+N+YPLPRIDDLFDQL+GAT FSKIDLRSGYHQLR++ D+ KTAF TR
Sbjct: 868 VDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 927
Query: 2479 YGSYEFLVMPFGLTNAPAVFMDLMNRVFRPFLDQFVIVFIDDILVYSRSEMEHEEHLRLV 2300
YG +E VM FGLTNAPA F++LMN+VF +LD+FV+VFIDDIL+YSR++ EHEEHL L
Sbjct: 928 YGLFECTVMSFGLTNAPAFFVNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLCLA 987
Query: 2299 LQTLRNHSLYAKFGKCDFWLSEIQFLGHVISAEGIAVDPAKVEAVMDWQTPTSVAEIRSF 2120
L+ LR H LYAKF KC+FWLSE++FLGHVISA G+A+DP+ VE+V +W+ P +V+EIRSF
Sbjct: 988 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAIDPSNVESVTNWKQPKTVSEIRSF 1047
Query: 2119 LGLAGYYRKFIQNFSRIAAPMTGLTRKGVPFEWSTRCEEAFELLKKKLTSAPVLVIPSPE 1940
LGLAGYYR+FI+NFS+IA PMT L RK V ++WS CE +F+ LK +L SAP+L++P P+
Sbjct: 1048 LGLAGYYRRFIENFSKIAKPMTRLLRKDVKYKWSEECERSFQELKNRLISAPILILPDPK 1107
Query: 1939 QSFVVYTDASLMGLGGVLMQNQRVVAYASRQLKVHEQNYPTHDLELAAVVFALKVWRHYL 1760
+ F VY DAS +GLG VLMQN +VVAYASRQL+ HE+NYPTHD+ELA VV ALK+WRHYL
Sbjct: 1108 KGFQVYCDASKLGLGCVLMQNGKVVAYASRQLRPHEKNYPTHDIELAVVVHALKIWRHYL 1167
Query: 1759 YGVQFELFTDHKSLKYLFSQKELNQRQRRWIEFIKDYEFALQYHPGKANVVXXXXXXXXX 1580
+G + E++TDHKSLKY+F+Q +LN RQRRW+E IKDY+ + YHPGKANVV
Sbjct: 1168 FGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV---ADALSR 1224
Query: 1579 XXXXXXXXXXXRDLVTLSSFDFRSRTGSCMYFLGALQIQSPWISKVLEAQPANPWIQEHR 1400
L F+ + F+ AL+ + I +V EAQ +P IQE +
Sbjct: 1225 KGYCNATEGRQLPLELCKEFERLNLGIVSRGFVAALEAKPTLIDQVREAQINDPDIQEIK 1284
Query: 1399 SETFXXXXXXXXXXXXXXXXXXXXLVVPDVPELRRQLLDEAHRSRYTVHPGCTKMYQDLK 1220
+ VPD +L+ +L EAH + Y++HPG TKMYQDLK
Sbjct: 1285 KNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILQEAHDTLYSIHPGSTKMYQDLK 1344
Query: 1219 RQYWWRGMKRDIAHYVSCCQTCQQVKAEHQRPAGELQPLPIPEWKWDQISMDFIVGLPRT 1040
++WW MKR+IA YV C CQ+VKAEHQ+PAG LQPL IPEWKW++I MDFI GLPRT
Sbjct: 1345 ERFWWASMKREIAEYVVVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRT 1404
Query: 1039 RRGHDSIWVVVDRLTKSAHFIPVKTTSSVEVLARIYVREIVRLHGVPASIVSDRGSAFTS 860
GHDSIWV+VDRLTK AHFIPVKTT S LA +Y+ IV LHGVP IVSDRGS FTS
Sbjct: 1405 SSGHDSIWVIVDRLTKVAHFIPVKTTYSRSRLAELYMARIVCLHGVPKKIVSDRGSQFTS 1464
Query: 859 RFWRSLQSAMGTQLAFSSAYHPQSDGQTERVNQVLEDMLRACVLDFQGSWEDHLPLVE 686
FW+ LQ MG++L FS+AYHPQ+DGQTERVNQ+LEDMLRAC LDF GSW+ +LP E
Sbjct: 1465 NFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAE 1522
Score = 226 bits (575), Expect(2) = 0.0
Identities = 105/218 (48%), Positives = 156/218 (71%)
Frame = -2
Query: 683 AYNNSYQSTIGMAPFEALYGRPC*SPVCWAEPEDSLLLGPEMVRETSERIALIRSRMLTA 504
+YNNSYQ+++ MAP+EALYGR C +P+ W + + + G +++RE E++ +I+ R+ A
Sbjct: 1524 SYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVA 1583
Query: 503 QSRQKSYADRRRRPLEFQVGDSVMLKVSPMKGVRRFGKRGKLAPRFIGPFRILDRVGAVS 324
QSR KSYAD R R L F+ GD V L+V+P++GV RF +GKLAPRF+GP++I+ R G V+
Sbjct: 1584 QSRHKSYADNRCRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVA 1643
Query: 323 YRLQLPESMAGVHNVFHVSILRRHLRDEEHQCVADATDLQIRPDATTEEAPVRILAHETK 144
Y+L+LP+S+AGVHNVFHVS L++ LR + A+ ++++ D T E P+RIL +
Sbjct: 1644 YQLELPQSLAGVHNVFHVSQLKKCLRVPTEE--ANLEQIEVQEDLTYVEKPIRILETNER 1701
Query: 143 RLRTKMIPLVKVQWSRQGVEEASWEREDDMRRDYPHLF 30
R R ++I KVQWS EE++WERED+++ +PHLF
Sbjct: 1702 RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1739
Score = 73.9 bits (180), Expect = 1e-09
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 1/231 (0%)
Frame = -3
Query: 4441 KFQRLRAPEFRGSSDPLVADEWKTDIQRLLLLLKVDPVESQMLASYSLKGEAIKWYES-Q 4265
+F R+R P F +++P+ A +W I + L LL+ E AS+ L G A +W++ +
Sbjct: 354 EFLRVRPPIFSSTTNPVEAGDWLHAIDKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR 413
Query: 4264 FTLEERRTVDWEEFVRRFDLRYVSAADRAAKETELMTLVQGDMTVSAYESRFTSLCRFTS 4085
+ W EF F ++ + + K+ E +L QG +V+ Y F L R+
Sbjct: 414 LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP 473
Query: 4084 DLYATEERRARMFERGLRPQLQRYVVSLSLPTVAKVVEAAKKQEVISDSARQVREQATXX 3905
+ +E R F GL +L +++ K+V+ A +QE + Q + +
Sbjct: 474 EDVRNDEERQEKFLEGLNDELSYPLMTGDYADFQKLVDKAIRQEDKYNRMEQKKRRIAQF 533
Query: 3904 XXXXXXXXXXXXPFTQISQPGSQGKGTSTGSRQDKRCFRCGQTGHFKNQCP 3752
S P QG G+S+ R ++ F + +NQ P
Sbjct: 534 KTQQGNNQRPRLTLGPQSMP--QG-GSSSVVRPQRQFFNNNAGNNIRNQAP 581