BLASTX nr result
ID: Anemarrhena21_contig00012641
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00012641
(1524 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010922212.1| PREDICTED: RNA polymerase sigma factor sigD,... 366 2e-98
ref|XP_008806591.1| PREDICTED: RNA polymerase sigma factor sigD,... 362 6e-97
ref|XP_009397071.1| PREDICTED: RNA polymerase sigma factor sigD,... 334 1e-88
ref|XP_009397069.1| PREDICTED: RNA polymerase sigma factor sigD,... 325 6e-86
ref|XP_009397070.1| PREDICTED: RNA polymerase sigma factor sigD,... 315 6e-83
ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD,... 289 4e-75
ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD,... 279 4e-72
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 279 4e-72
ref|XP_006851106.1| PREDICTED: RNA polymerase sigma factor sigD,... 278 6e-72
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr... 268 8e-69
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,... 266 3e-68
ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus nota... 262 6e-67
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca... 261 8e-67
emb|CDX85630.1| BnaA02g01830D [Brassica napus] 258 7e-66
ref|XP_009125938.1| PREDICTED: RNA polymerase sigma factor sigD,... 258 1e-65
emb|CDX91100.1| BnaC02g04970D [Brassica napus] 258 1e-65
ref|XP_009121736.1| PREDICTED: RNA polymerase sigma factor sigD,... 257 2e-65
gb|KFK25599.1| hypothetical protein AALP_AA8G135300 [Arabis alpina] 257 2e-65
emb|CDY09826.1| BnaC09g43350D [Brassica napus] 256 3e-65
ref|XP_008231483.1| PREDICTED: RNA polymerase sigma factor sigD,... 256 3e-65
>ref|XP_010922212.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Elaeis
guineensis]
Length = 455
Score = 366 bits (940), Expect = 2e-98
Identities = 216/446 (48%), Positives = 276/446 (61%), Gaps = 29/446 (6%)
Frame = +3
Query: 147 CSLNRST---LLLPLSHSVPSKPSVQISPPPCLSSTSTVSKHGSNTIVSDDSFTIGAIXX 317
CSLN S+ + + L H+V KPS QI P S S+ +HGS++ VS++ TI A+
Sbjct: 6 CSLNTSSPASVSISLPHAVLPKPSAQI-PLSSSSPYSSTIRHGSHS-VSEEPLTIAAVIE 63
Query: 318 XXXXXXXXXXXXXXXXXXXXXX-------------EQLSIIGDEDACLHQSVVEAXXXXX 458
+Q+ + DE S+
Sbjct: 64 AVKLANSAVQAARDAMSLALALGEIRSSMSSDPKKQQMELEQDEGIFKKNSMAARRRQRR 123
Query: 459 XXXXXXXTTAYHDNYDDDAHSGRGLIKECSSRSERSRFLTRRQEAEFSLYLKVGAMLEDT 638
+ DN DD+ S LI+ CSSRSERSR+LT R+EAEFS YLK AMLE
Sbjct: 124 KGRKNQKLSISDDNKDDE-DSNSYLIEGCSSRSERSRYLTTREEAEFSRYLKQEAMLETA 182
Query: 639 DSRR-------------ATTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGL 779
+ A +R +++ L+ARECRERITLSYKRLVVSIATPYQGKGL
Sbjct: 183 GKQIRECSPLDSGCAAIAARMKRRHSERTLLKARECRERITLSYKRLVVSIATPYQGKGL 242
Query: 780 TLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRGV 959
+LQDLIQEGCIGLL+GA RFD++KGYKLSTY YWW S ++RLPG+L
Sbjct: 243 SLQDLIQEGCIGLLRGAWRFDYKKGYKLSTYAYWWIRQAILKAIANKSRMVRLPGNLCEA 302
Query: 960 MAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAGLTLK 1139
K++ + SLL+++LGR PTY+EIA+F +G S+V+++ E+S PISVD+ +NK GLTLK
Sbjct: 303 ANKIMKSNSLLRKQLGRNPTYDEIADFTGIGASSVRIISERSRHPISVDQPVNKQGLTLK 362
Query: 1140 DIIPGSDEARPEVFINRQLMLSNLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRLL 1319
DIIPG DE RPEV +NRQ ML N+++LL TLS RE+ II LHYGLNGE ARSC+EIGRLL
Sbjct: 363 DIIPGPDEIRPEVLVNRQEMLQNMEKLLKTLSGREQYIITLHYGLNGETARSCDEIGRLL 422
Query: 1320 KLSRERIRQIHWIALIKLQDKKGMIE 1397
LSRERIRQIH AL +L+++K +IE
Sbjct: 423 NLSRERIRQIHCSALRRLREEKSLIE 448
>ref|XP_008806591.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Phoenix
dactylifera]
Length = 449
Score = 362 bits (928), Expect = 6e-97
Identities = 211/444 (47%), Positives = 275/444 (61%), Gaps = 27/444 (6%)
Frame = +3
Query: 147 CSLNRSTLLLPLSHSVPSKPSVQI--SPPPCLSSTSTVSKHGSNTIVSDDSFTIGAIXXX 320
CSLN + LP H+V KPS QI S P SST H VS++ TI AI
Sbjct: 6 CSLNTA---LPPPHAVLPKPSAQIPVSSPSLYSSTIGNGSHS----VSEEPPTIAAITEA 58
Query: 321 XXXXXXXXXXXXXXXXXXXXXEQLSI------------IGDEDACLHQSVVEAXXXXXXX 464
+++ + + ++ + A
Sbjct: 59 VKLANSALQAARDAMSLALALGEITSSMQANHEKQQMELEQYEGAFKKNAMAAWRRRRRK 118
Query: 465 XXXXXTTAYHDNYDDDAHSGRGLIKECSSRSERSRFLTRRQEAEFSLYLKVGAMLEDTDS 644
+ +D+ + D +S R L++ CSSRSERSR+LT R+EAEFS YLK AMLE
Sbjct: 119 RRKNRKLSINDDDEADEYSSRYLMEGCSSRSERSRYLTPREEAEFSHYLKQEAMLETAGK 178
Query: 645 RR-------------ATTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLTL 785
+ + + +R +++ L+ARECRERITLSYKRLVVSIATPYQGKGL L
Sbjct: 179 QIRDCSPLDSGCAAISASMKRRNSERTLLKARECRERITLSYKRLVVSIATPYQGKGLGL 238
Query: 786 QDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRGVMA 965
QDLIQEGCIGLL+GA+RFD +KGYKLSTY YWW S ++R+PG+L M
Sbjct: 239 QDLIQEGCIGLLRGARRFDSKKGYKLSTYAYWWIRQAILKAIANKSRMVRMPGNLCEAMN 298
Query: 966 KVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAGLTLKDI 1145
K++++KSLL+R+LGR PTY+EIA+F +GVS+V+++ E+S PISVD+ +NK GLTLKDI
Sbjct: 299 KIMESKSLLRRQLGRNPTYDEIADFAGIGVSSVRIISERSRHPISVDQPVNKQGLTLKDI 358
Query: 1146 IPGSDEARPEVFINRQLMLSNLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRLLKL 1325
IPG DE RPEV +NRQ ML N+ +LL L+ RE+ II LHYGLNGE ARSC+EIGRLL L
Sbjct: 359 IPGPDEIRPEVIVNRQEMLQNMGKLLKILNGREQYIIRLHYGLNGETARSCDEIGRLLNL 418
Query: 1326 SRERIRQIHWIALIKLQDKKGMIE 1397
SRERIRQIH AL +L++++ +IE
Sbjct: 419 SRERIRQIHCSALRRLREERSLIE 442
>ref|XP_009397071.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X3
[Musa acuminata subsp. malaccensis]
Length = 468
Score = 334 bits (857), Expect = 1e-88
Identities = 178/320 (55%), Positives = 229/320 (71%), Gaps = 13/320 (4%)
Frame = +3
Query: 495 DNYDDDAHSGRGLI-KECSSRSERSRFLTRRQEAEFSLYLKVGAMLE------------D 635
D+ ++D + R L+ K CSSRSERS++LT RQEAEFS YLK AM++ D
Sbjct: 149 DDSEEDGIASRFLLGKTCSSRSERSKYLTSRQEAEFSRYLKEEAMMDAEAQLLRGCSSLD 208
Query: 636 TDSRRATTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIG 815
+++ + +++KA LRARE RERITLSYKRLVVSIA YQGKGLT+QDLIQEGCIG
Sbjct: 209 SENVAQYGRMKRRSEKAFLRARESRERITLSYKRLVVSIAATYQGKGLTIQDLIQEGCIG 268
Query: 816 LLQGAQRFDHRKGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQ 995
LL+GAQRFDH KGYKLSTYVYWW S ++RLPG+L M KV +A S L+
Sbjct: 269 LLRGAQRFDHMKGYKLSTYVYWWIKQGIVRAIANKSRLIRLPGNLCEAMNKVAEANSSLR 328
Query: 996 RRLGRLPTYEEIAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAGLTLKDIIPGSDEARPE 1175
RRLGR PTY+E+A+ +++ VS V+LV E+S PIS+D+ + K GL L DIIP D+ RPE
Sbjct: 329 RRLGRSPTYKEVADLIDMDVSNVRLVSERSRPPISIDQ-VGKEGLRLMDIIPAQDDRRPE 387
Query: 1176 VFINRQLMLSNLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHW 1355
++RQL+L NL++ L TLS+RE I+ LHYGLNGE RSC+EIGRL+ LSRER+RQIH
Sbjct: 388 TVVDRQLLLQNLEKALKTLSDREEYIVRLHYGLNGETVRSCDEIGRLMNLSRERVRQIHC 447
Query: 1356 IALIKLQDKKGMIEWFAADV 1415
AL +L++ K +E+ +V
Sbjct: 448 GALKRLREDKSFVEYLHHNV 467
>ref|XP_009397069.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1
[Musa acuminata subsp. malaccensis]
Length = 481
Score = 325 bits (833), Expect = 6e-86
Identities = 178/333 (53%), Positives = 229/333 (68%), Gaps = 26/333 (7%)
Frame = +3
Query: 495 DNYDDDAHSGRGLI-KECSSRSERSRFLTRRQEAEFSLYLKVGAMLE------------D 635
D+ ++D + R L+ K CSSRSERS++LT RQEAEFS YLK AM++ D
Sbjct: 149 DDSEEDGIASRFLLGKTCSSRSERSKYLTSRQEAEFSRYLKEEAMMDAEAQLLRGCSSLD 208
Query: 636 TDSRRATTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQ----- 800
+++ + +++KA LRARE RERITLSYKRLVVSIA YQGKGLT+QDLIQ
Sbjct: 209 SENVAQYGRMKRRSEKAFLRARESRERITLSYKRLVVSIAATYQGKGLTIQDLIQKISQV 268
Query: 801 --------EGCIGLLQGAQRFDHRKGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRG 956
EGCIGLL+GAQRFDH KGYKLSTYVYWW S ++RLPG+L
Sbjct: 269 IDHTALFQEGCIGLLRGAQRFDHMKGYKLSTYVYWWIKQGIVRAIANKSRLIRLPGNLCE 328
Query: 957 VMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAGLTL 1136
M KV +A S L+RRLGR PTY+E+A+ +++ VS V+LV E+S PIS+D+ + K GL L
Sbjct: 329 AMNKVAEANSSLRRRLGRSPTYKEVADLIDMDVSNVRLVSERSRPPISIDQ-VGKEGLRL 387
Query: 1137 KDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRL 1316
DIIP D+ RPE ++RQL+L NL++ L TLS+RE I+ LHYGLNGE RSC+EIGRL
Sbjct: 388 MDIIPAQDDRRPETVVDRQLLLQNLEKALKTLSDREEYIVRLHYGLNGETVRSCDEIGRL 447
Query: 1317 LKLSRERIRQIHWIALIKLQDKKGMIEWFAADV 1415
+ LSRER+RQIH AL +L++ K +E+ +V
Sbjct: 448 MNLSRERVRQIHCGALKRLREDKSFVEYLHHNV 480
>ref|XP_009397070.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X2
[Musa acuminata subsp. malaccensis]
Length = 472
Score = 315 bits (807), Expect = 6e-83
Identities = 174/333 (52%), Positives = 224/333 (67%), Gaps = 26/333 (7%)
Frame = +3
Query: 495 DNYDDDAHSGRGLI-KECSSRSERSRFLTRRQEAEFSLYLKVGAMLE------------D 635
D+ ++D + R L+ K CSSRSERS++LT RQEAEFS YLK AM++ D
Sbjct: 149 DDSEEDGIASRFLLGKTCSSRSERSKYLTSRQEAEFSRYLKEEAMMDAEAQLLRGCSSLD 208
Query: 636 TDSRRATTERRGKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQ----- 800
+++ + +++KA LRARE RERITLSYKRLVVSIA YQGKGLT+QDLIQ
Sbjct: 209 SENVAQYGRMKRRSEKAFLRARESRERITLSYKRLVVSIAATYQGKGLTIQDLIQKISQV 268
Query: 801 --------EGCIGLLQGAQRFDHRKGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRG 956
EGCIGLL+GAQRFDH KGYKLSTYVYWW S ++RLPG+L
Sbjct: 269 IDHTALFQEGCIGLLRGAQRFDHMKGYKLSTYVYWWIKQGIVRAIANKSRLIRLPGNLCE 328
Query: 957 VMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAGLTL 1136
M KV +A S L+RRLGR PTY+E+A+ +++ VS V+LV E+S PIS+D
Sbjct: 329 AMNKVAEANSSLRRRLGRSPTYKEVADLIDMDVSNVRLVSERSRPPISID---------- 378
Query: 1137 KDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRL 1316
+DIIP D+ RPE ++RQL+L NL++ L TLS+RE I+ LHYGLNGE RSC+EIGRL
Sbjct: 379 QDIIPAQDDRRPETVVDRQLLLQNLEKALKTLSDREEYIVRLHYGLNGETVRSCDEIGRL 438
Query: 1317 LKLSRERIRQIHWIALIKLQDKKGMIEWFAADV 1415
+ LSRER+RQIH AL +L++ K +E+ +V
Sbjct: 439 MNLSRERVRQIHCGALKRLREDKSFVEYLHHNV 471
>ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nelumbo
nucifera]
Length = 455
Score = 289 bits (740), Expect = 4e-75
Identities = 160/297 (53%), Positives = 204/297 (68%), Gaps = 16/297 (5%)
Frame = +3
Query: 534 IKECSSRSERSRFLTRRQEAEFSLYLKVGAMLEDTDSR-RATTER-------------RG 671
++ CS R RS +LT ++EAEFSLYLK A LE +R R T E RG
Sbjct: 146 MESCSFRPSRSMYLTPKEEAEFSLYLKEEARLEAARTRLRETNEHEPTSSQWAEAAGMRG 205
Query: 672 KT-DKACLRARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHR 848
T DK +ARE RERI SY+RL+ SIA+ YQGKGL+LQDLIQEG IGLL+G +RFD R
Sbjct: 206 ATLDKMLCQARESRERIVFSYRRLIFSIASGYQGKGLSLQDLIQEGSIGLLRGXERFDPR 265
Query: 849 KGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEE 1028
KGYKLSTYVYWW S ++RLPGS+ +MAK+ +A ++L RLGR+PTY+E
Sbjct: 266 KGYKLSTYVYWWIKQAIIRAIASKSRMVRLPGSVSEMMAKIAEANTVLSTRLGRVPTYDE 325
Query: 1029 IAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLS 1205
IA+ L + VSTV L+CE+S P+SVDR+ + G + L++II G +E PE +NRQLM
Sbjct: 326 IADMLGICVSTVSLLCERSRPPMSVDRTYSDHGCMKLQEIISGPEETTPETMVNRQLMKQ 385
Query: 1206 NLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
+++LL L ERE I+ L++GLNGE S EEIGRLL LSRER+RQI++IAL KLQ
Sbjct: 386 EVERLLKILGEREANILRLYFGLNGETPCSFEEIGRLLNLSRERVRQIYYIALAKLQ 442
>ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Vitis
vinifera]
Length = 442
Score = 279 bits (714), Expect = 4e-72
Identities = 157/297 (52%), Positives = 199/297 (67%), Gaps = 16/297 (5%)
Frame = +3
Query: 534 IKECSSRSERSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATTE---------------RR 668
+ E S + RS LT R+EAEF L LK A LE R A T +R
Sbjct: 133 VHEVSFGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKR 192
Query: 669 GKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHR 848
DK RE RERI SY+RLVVSIA YQGKGL+LQDLIQEG IGLL+GA+RFD
Sbjct: 193 SSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPD 252
Query: 849 KGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEE 1028
+GYKLSTYVYWW S I+RLPGS+ ++AK+ +A+++L RRL RLPTY+E
Sbjct: 253 RGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDE 312
Query: 1029 IAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLS 1205
IAEF++V VSTV+LV E+S PISVD+++ G +TL++IIPG DE P+ + RQLM
Sbjct: 313 IAEFIDVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQ 372
Query: 1206 NLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
+++ L TL ERE I+ L++G+NGE S EEIGRL+KLSRER+RQI+ IAL KL+
Sbjct: 373 EVERALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLR 429
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 279 bits (714), Expect = 4e-72
Identities = 157/297 (52%), Positives = 199/297 (67%), Gaps = 16/297 (5%)
Frame = +3
Query: 534 IKECSSRSERSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATTE---------------RR 668
+ E S + RS LT R+EAEF L LK A LE R A T +R
Sbjct: 10 VHEVSFGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKR 69
Query: 669 GKTDKACLRARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHR 848
DK RE RERI SY+RLVVSIA YQGKGL+LQDLIQEG IGLL+GA+RFD
Sbjct: 70 SSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPD 129
Query: 849 KGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEE 1028
+GYKLSTYVYWW S I+RLPGS+ ++AK+ +A+++L RRL RLPTY+E
Sbjct: 130 RGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDE 189
Query: 1029 IAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLS 1205
IAEF++V VSTV+LV E+S PISVD+++ G +TL++IIPG DE P+ + RQLM
Sbjct: 190 IAEFIDVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQ 249
Query: 1206 NLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
+++ L TL ERE I+ L++G+NGE S EEIGRL+KLSRER+RQI+ IAL KL+
Sbjct: 250 EVERALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLR 306
>ref|XP_006851106.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Amborella
trichopoda] gi|548854777|gb|ERN12687.1| hypothetical
protein AMTR_s00025p00248060 [Amborella trichopoda]
Length = 449
Score = 278 bits (712), Expect = 6e-72
Identities = 154/303 (50%), Positives = 201/303 (66%), Gaps = 18/303 (5%)
Frame = +3
Query: 528 GLIKECSSRSERSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATTERRGKT---------- 677
GL ++ SS + +LTRR+EAEFSL L+ GA LE RR E+RG+
Sbjct: 139 GLFEKSSSSED---YLTRREEAEFSLCLREGARLEGI--RRKLREKRGREPSRGQWAEAV 193
Query: 678 -------DKACLRARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQR 836
++ ARECR RIT SY+RLVVSIAT Y GKG++L DLIQEG +GLL+GA+R
Sbjct: 194 GMRESSMERRLGIARECRNRITNSYRRLVVSIATSYPGKGMSLSDLIQEGSLGLLRGAER 253
Query: 837 FDHRKGYKLSTYVYWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLP 1016
FDHR+GYKLSTYVYWW S I+RLPGS+ +AKV +A +L RLGR P
Sbjct: 254 FDHRRGYKLSTYVYWWIKQAIIKAIATKSRIVRLPGSMCATVAKVSEASGVLMSRLGRRP 313
Query: 1017 TYEEIAEFLNVGVSTVQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQ 1193
+ EEIAE + +S V+LV E+ P+S+D+ L + G ++LKDII G +E RPE + R+
Sbjct: 314 SQEEIAEKTGIALSRVRLVTERCRLPLSIDQPLGRHGDISLKDIIAGPEETRPEEMVKRE 373
Query: 1194 LMLSNLDQLLTTLSERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKL 1373
M ++ LL TLSERE I+ L +G+NGE +SC+EIGRLL LSRER+RQIH+IAL KL
Sbjct: 374 WMKGTMEMLLQTLSEREECIVRLQFGMNGETPKSCDEIGRLLNLSRERVRQIHYIALAKL 433
Query: 1374 QDK 1382
+ +
Sbjct: 434 RQQ 436
>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
gi|557541154|gb|ESR52198.1| hypothetical protein
CICLE_v10033747mg [Citrus clementina]
Length = 436
Score = 268 bits (685), Expect = 8e-69
Identities = 147/285 (51%), Positives = 189/285 (66%), Gaps = 16/285 (5%)
Frame = +3
Query: 570 FLTRRQEAEFSLYLKVGAMLEDTDSR---------------RATTERRGKTDKACLRARE 704
+LT +EAE LK GA LE+ +AT ++ K DK + RE
Sbjct: 139 YLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERE 198
Query: 705 CRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWW 884
+ERI SY+ LVVSIAT YQGKGL+L+DLIQEG IGLL+GA+RF+ +GYKLSTYVYWW
Sbjct: 199 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 258
Query: 885 XXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTV 1064
S +RLPGS+ G++AK+ +A ++L RRL R+PT EIAE LN+ VSTV
Sbjct: 259 IKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRRMPTDNEIAEMLNIHVSTV 318
Query: 1065 QLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSER 1241
+L E++ PIS+D ++ G +TL+DIIPG DE PE + +QLM L +LL TLSER
Sbjct: 319 RLAIERTRHPISLDGAITDTGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSER 378
Query: 1242 ERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
E I+ LH+GL+G+ SC+EIGRLL LSRER+RQI IAL KLQ
Sbjct: 379 EADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQIRGIALTKLQ 423
>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Citrus sinensis]
Length = 436
Score = 266 bits (680), Expect = 3e-68
Identities = 146/285 (51%), Positives = 188/285 (65%), Gaps = 16/285 (5%)
Frame = +3
Query: 570 FLTRRQEAEFSLYLKVGAMLEDTDSR---------------RATTERRGKTDKACLRARE 704
+LT +EAE LK GA LE+ +AT ++ K DK + RE
Sbjct: 139 YLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQLAKATGMKQSKVDKILCKERE 198
Query: 705 CRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWW 884
+ERI SY+ LVVSIAT YQGKGL+L+DLIQEG IGLL+GA+RF+ +GYKLSTYVYWW
Sbjct: 199 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 258
Query: 885 XXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTV 1064
S +RLPGS+ G++AK+ +A ++L RRL R+PT EIAE LN+ VS V
Sbjct: 259 IKQAIIRTIANKSRTIRLPGSMSGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSNV 318
Query: 1065 QLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSER 1241
+L E++ PIS+D ++ G +TL+DIIPG DE PE + +QLM L +LL TLSER
Sbjct: 319 RLAIERTRHPISLDGAITDTGCMTLQDIIPGPDETMPEKMVQKQLMKQELKELLQTLSER 378
Query: 1242 ERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
E I+ LH+GL+G+ SC+EIGRLL LSRER+RQI IAL KLQ
Sbjct: 379 EADILRLHFGLDGQTPVSCKEIGRLLTLSRERVRQIRGIALTKLQ 423
>ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus notabilis]
gi|587907279|gb|EXB95293.1| RNA polymerase sigma factor
rpoD [Morus notabilis]
Length = 422
Score = 262 bits (669), Expect = 6e-67
Identities = 144/286 (50%), Positives = 194/286 (67%), Gaps = 17/286 (5%)
Frame = +3
Query: 570 FLTRRQEAEFSLYLKVGAMLEDTDSRRATTERRGKTDKACLRA---------------RE 704
+L+ R+EAE L LK GA LE T R +E T K +A RE
Sbjct: 122 YLSPREEAECCLILKEGAKLEATRLRMTNSEDHEPTSKELAKAMGMEMRSIDKMLCDKRE 181
Query: 705 CRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWW 884
+ERI+ SY+RLVVS+A YQGKGL+ DLIQEG +GLL+GAQ+FD ++G KLSTYVYWW
Sbjct: 182 SQERISRSYRRLVVSVAAGYQGKGLSFPDLIQEGSVGLLRGAQKFDPQRGNKLSTYVYWW 241
Query: 885 XXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTV 1064
S ++RLPG++ G++AKV +A ++L +RL R PTY+EIA+ + V VSTV
Sbjct: 242 IRQAIIRAIENKSRVVRLPGNMCGIVAKVTEANNVLNKRLRRFPTYDEIAQVVGVHVSTV 301
Query: 1065 QLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLL-TTLSE 1238
+LV E+ PIS+DR++ + G +TL++IIPG +E PE + +QLM +++LL T LS+
Sbjct: 302 RLVSERIRPPISLDRAITERGCMTLQEIIPGPEEISPEKMVRKQLMKQEIEKLLKTVLSD 361
Query: 1239 RERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
RE ++ LH+GL+G+ SCEEIGRLLKLSRERIRQI+ IAL KLQ
Sbjct: 362 REANVLRLHFGLSGDIPLSCEEIGRLLKLSRERIRQINGIALSKLQ 407
>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
[Medicago truncatula]
Length = 403
Score = 261 bits (668), Expect = 8e-67
Identities = 148/287 (51%), Positives = 189/287 (65%), Gaps = 13/287 (4%)
Frame = +3
Query: 555 SERSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATTERRGKT------------DKACLRA 698
S S FL+ EAE L LK GA +E R TE+ G + DK +
Sbjct: 106 SVTSGFLSSTDEAELCLCLKEGAKIEVAKQRM--TEQEGNSAISRFTLENTSVDKVLINT 163
Query: 699 RECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVY 878
R+ +ER+ Y+ LV SIA YQGKGL++QDLIQEG IGLL GA++FD +G KLSTYVY
Sbjct: 164 RKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCKLSTYVY 223
Query: 879 WWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVS 1058
WW S ++RLPG G++AK+ +A ++L+RRL R PTY EIAE LNV VS
Sbjct: 224 WWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVS 283
Query: 1059 TVQLVCEKSGQPISVDRSL-NKAGLTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTLS 1235
TV+LV E+S QPIS+DRS+ +++ L LK+IIPG E PE + RQLM + +LL TL
Sbjct: 284 TVKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLD 343
Query: 1236 ERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
+RE +I+ L++GLNGE S EEIG+LLKLSRERIRQIH IAL KL+
Sbjct: 344 KREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLE 390
>emb|CDX85630.1| BnaA02g01830D [Brassica napus]
Length = 408
Score = 258 bits (660), Expect = 7e-66
Identities = 142/284 (50%), Positives = 194/284 (68%), Gaps = 10/284 (3%)
Frame = +3
Query: 555 SERSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATTER-----RGKTDKAC----LRAREC 707
+ RS FL+R +E + LYLK GA+LE+ ++ E +GK ++ R RE
Sbjct: 109 ASRSGFLSRVEEVQLCLYLKEGAILENLETSVEENEMLSVLMKGKKKRSANEILCRRREA 168
Query: 708 RERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWWX 887
RE+IT Y+RLVVSIAT YQGKGL LQDLIQEG IGLL+GA+RFD +GYKLSTYVYWW
Sbjct: 169 REKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYVYWWI 228
Query: 888 XXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTVQ 1067
S +++LPGS+ + AKV +A ++L R+L R+P+ EEIA+ LN+ VS V+
Sbjct: 229 KQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLSRKLRRIPSCEEIADHLNIHVSAVR 288
Query: 1068 LVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSERE 1244
L E+S P+S+DR L+ G +TL++I+ G DE RPE + ++ M + QLL TL+ RE
Sbjct: 289 LAVERSRSPVSLDRVLSHNGRMTLQEIVRGPDETRPEEMVRKEHMKYEIKQLLGTLTARE 348
Query: 1245 RQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
+++ L++GLNGE S EEIG+ LKLSRER+RQI+ IAL KL+
Sbjct: 349 SRVLGLYFGLNGETPMSFEEIGKKLKLSRERVRQINGIALTKLR 392
>ref|XP_009125938.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Brassica rapa]
Length = 408
Score = 258 bits (658), Expect = 1e-65
Identities = 141/284 (49%), Positives = 193/284 (67%), Gaps = 10/284 (3%)
Frame = +3
Query: 555 SERSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATTER-----RGKTDKAC----LRAREC 707
+ RS FL+R +E + YLK GA+LE+ ++ E +GK ++ R RE
Sbjct: 109 ASRSGFLSRLEEVQLCFYLKEGAILENLETSVEENEMVSLLMKGKKKRSANEILYRRREA 168
Query: 708 RERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWWX 887
RE+IT Y+RLVVSIAT YQGKGL LQDLIQEG IGLL+GA+RFD +GYKLSTYVYWW
Sbjct: 169 REKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYVYWWI 228
Query: 888 XXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTVQ 1067
S +++LPGS+ + AKV +A ++L R+L R+P+ EEIA+ LN+ VS V+
Sbjct: 229 KQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLSRKLRRIPSSEEIADHLNIHVSAVR 288
Query: 1068 LVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSERE 1244
L E+S P+S+DR L+ G +TL++I+ G DE RPE + ++ M + QLL TL+ RE
Sbjct: 289 LAVERSRSPVSLDRVLSHNGRMTLQEIVRGPDETRPEEMVRKEHMKHEIKQLLGTLTARE 348
Query: 1245 RQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
+++ L++GLNGE S EEIG+ LKLSRER+RQI+ IAL KL+
Sbjct: 349 SRVLGLYFGLNGETPMSFEEIGKKLKLSRERVRQINGIALTKLR 392
>emb|CDX91100.1| BnaC02g04970D [Brassica napus]
Length = 409
Score = 258 bits (658), Expect = 1e-65
Identities = 140/285 (49%), Positives = 191/285 (67%), Gaps = 11/285 (3%)
Frame = +3
Query: 555 SERSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATT----------ERRGKTDKACLRARE 704
+ RS FL+R +E + LYLK GA LE+ ++ ++R ++ R RE
Sbjct: 109 ASRSGFLSRLEEVQLCLYLKEGAKLENLETSVEENVMVSLFGNGNKKRSSANEILCRRRE 168
Query: 705 CRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYWW 884
RE+IT Y+RLVVSIAT YQGKGL LQDLIQEG IGLL+GA+RFD +GYKLSTYVYWW
Sbjct: 169 AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYVYWW 228
Query: 885 XXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVSTV 1064
S +++LPGS+ + AKV +A ++L R+L R+P+ EEIA LN+ VS V
Sbjct: 229 IKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLSRKLRRIPSCEEIANHLNIHVSAV 288
Query: 1065 QLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSER 1241
+L E+S P+S+DR L+ G +TL++I+ G DE RPE + ++ M + QLL TL+ R
Sbjct: 289 RLAVERSRSPVSLDRVLSHNGRMTLQEIVRGPDETRPEEMVRKEHMKHEIKQLLGTLTAR 348
Query: 1242 ERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
E +++ L++GLNGE S EEIG+ LKLSRER+RQI+ IAL KL+
Sbjct: 349 ESRVLGLYFGLNGETPMSFEEIGKKLKLSRERVRQINGIALTKLR 393
>ref|XP_009121736.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Brassica rapa]
Length = 417
Score = 257 bits (656), Expect = 2e-65
Identities = 142/289 (49%), Positives = 190/289 (65%), Gaps = 14/289 (4%)
Frame = +3
Query: 555 SERSRFLTRRQEAEFSLYLKVGAMLEDTD-------------SRRATTERRGKTDKACLR 695
+ RS FL+R E + LYLK GA+LE+ S +++ ++ R
Sbjct: 114 ASRSGFLSRSDEVQLCLYLKEGAILENLGTSGEENGMVSVLLSSTGKGKKKRSANEILCR 173
Query: 696 ARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYV 875
RE RE+IT Y+RLVVSIAT YQGKGL LQDLIQEG IGLL+GA+RFD +GYKLSTYV
Sbjct: 174 RREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYV 233
Query: 876 YWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGV 1055
YWW S +++LPGS+ + AKV +A ++L R+L R P+ EEIAE LNV V
Sbjct: 234 YWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRAPSSEEIAEHLNVNV 293
Query: 1056 STVQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTL 1232
S V+L E+S P+S+DR + G +TL++I+ G DE RPE + R+ M + QLL TL
Sbjct: 294 SAVRLAVERSRSPVSLDRVASHYGRMTLQEIVRGPDETRPEEMVKREHMKEGIKQLLGTL 353
Query: 1233 SERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQD 1379
+ RE +++ L++GLNGE S EEIG+ LKLSRER+RQI+ IAL KL++
Sbjct: 354 TARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALAKLRN 402
>gb|KFK25599.1| hypothetical protein AALP_AA8G135300 [Arabis alpina]
Length = 413
Score = 257 bits (656), Expect = 2e-65
Identities = 143/287 (49%), Positives = 192/287 (66%), Gaps = 12/287 (4%)
Frame = +3
Query: 555 SERSRFLTRRQEAEFSLYLKVGAMLE-------DTDSRRATTERRGKTDKAC----LRAR 701
S RS FL+R +E + LYLK GA LE D + +GK ++ R R
Sbjct: 112 SSRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEDKEMVSVLMSSKGKKKRSVNEILCRRR 171
Query: 702 ECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYVYW 881
E RE+IT Y+RLVVSIAT YQGKGL LQDLIQEG IGLL+GA+RFD +GYKLSTYVYW
Sbjct: 172 EAREKITRCYRRLVVSIATSYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYVYW 231
Query: 882 WXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGVST 1061
W S +++LPGS+ + AKV +A ++L R+L R P+ EEIAE LN+ VS
Sbjct: 232 WIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRPPSCEEIAEHLNLHVSA 291
Query: 1062 VQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTLSE 1238
V+L E+ PIS+DR ++ G +TL++I+ G +E RPE + R+ M ++QLL TL+
Sbjct: 292 VRLAVERGRSPISLDRVASQNGRMTLQEIVRGPEETRPEEMVKREHMKQEIEQLLGTLTA 351
Query: 1239 RERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQD 1379
RE +++ L++GLNGE S EEIG+LLKLSRER+RQI+ +AL KL++
Sbjct: 352 RESRVLGLYFGLNGETPMSFEEIGKLLKLSRERVRQINGLALTKLRN 398
>emb|CDY09826.1| BnaC09g43350D [Brassica napus]
Length = 419
Score = 256 bits (654), Expect = 3e-65
Identities = 140/289 (48%), Positives = 192/289 (66%), Gaps = 14/289 (4%)
Frame = +3
Query: 555 SERSRFLTRRQEAEFSLYLKVGAMLEDTD-------------SRRATTERRGKTDKACLR 695
+ RS FL+R +E + LYLK GA+LE+ S + +++ ++ R
Sbjct: 116 ASRSGFLSRSEEVQLCLYLKEGAILENLGASVEENGMVSVLLSSTSKGKKKRSANEILCR 175
Query: 696 ARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYV 875
RE RE+IT Y+RLVVSIAT YQGKGL LQDLIQEG IGLL+GA+RFD +GYKLSTYV
Sbjct: 176 RREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYV 235
Query: 876 YWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGV 1055
YWW S +++LPGS+ + AKV +A ++L R+L R P+ EEIAE LN+ V
Sbjct: 236 YWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRAPSSEEIAEHLNINV 295
Query: 1056 STVQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTL 1232
S V+L ++S P+S+DR + G +TL++I+ G DE RPE + R+ M + QLL TL
Sbjct: 296 SAVRLAVDRSRTPVSLDRVASHYGRMTLQEIVRGPDETRPEEMVKREHMKEGIKQLLGTL 355
Query: 1233 SERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQD 1379
+ RE +++ L++GLNGE S EEIG+ LKLSRER+RQI+ IAL KL++
Sbjct: 356 TARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALAKLRN 404
>ref|XP_008231483.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Prunus
mume]
Length = 442
Score = 256 bits (654), Expect = 3e-65
Identities = 142/288 (49%), Positives = 189/288 (65%), Gaps = 16/288 (5%)
Frame = +3
Query: 561 RSRFLTRRQEAEFSLYLKVGAMLEDTDSRRATTERRGKT---------------DKACLR 695
R L+ R+EAE L LK GA LE R ++ T DK +
Sbjct: 140 RYEHLSPREEAECCLSLKEGARLESERFRVVEAQKHEPTSKQLAKAMGMKMRSIDKVLCK 199
Query: 696 ARECRERITLSYKRLVVSIATPYQGKGLTLQDLIQEGCIGLLQGAQRFDHRKGYKLSTYV 875
RE +E+I SY+ LVVS+A+ YQGKGL+ QDLIQEG IGLL+GA++FDH + +KLSTYV
Sbjct: 200 RRESQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQEGSIGLLRGAEKFDHERKWKLSTYV 259
Query: 876 YWWXXXXXXXXXXXXSGIMRLPGSLRGVMAKVIDAKSLLQRRLGRLPTYEEIAEFLNVGV 1055
YWW S I+RLPG + G+MAK+ A++ L +RL RLP+++E+AE + V
Sbjct: 260 YWWIRQAIIRAIENKSRIIRLPGHVCGMMAKITKAQNSLNQRLQRLPSHDELAEVIKVNA 319
Query: 1056 STVQLVCEKSGQPISVDRSLNKAG-LTLKDIIPGSDEARPEVFINRQLMLSNLDQLLTTL 1232
STV+LVCE+S PIS+DR G +TL++II G +E PE + RQLM +++LL TL
Sbjct: 320 STVKLVCERSRPPISLDRVATVRGSMTLQEIIQGPEEMMPEKMLIRQLMKQEVEKLLKTL 379
Query: 1233 SERERQIIELHYGLNGERARSCEEIGRLLKLSRERIRQIHWIALIKLQ 1376
S+RE ++ LH+GLNGE +S EEIGRLLKLSRER+RQI+ IAL KL+
Sbjct: 380 SDREANVLRLHFGLNGESPQSFEEIGRLLKLSRERVRQINGIALSKLR 427