BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00010504
         (3543 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                    1168   0.0  
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...  1064   0.0  
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...  1053   0.0  
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                      1039   0.0  
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   981   0.0  
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     973   0.0  
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   886   0.0  
emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]   829   0.0  
emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]   773   0.0  
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   722   0.0  
emb|CAN73613.1| hypothetical protein VITISV_023299 [Vitis vinifera]   704   0.0  
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   682   0.0  
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         660   0.0  
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   659   0.0  
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   658   0.0  
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   658   0.0  
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     657   0.0  
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     657   0.0  
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   655   0.0  
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc...   654   0.0  

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 1168 bits (3022), Expect = 0.0
 Identities = 595/1011 (58%), Positives = 734/1011 (72%), Gaps = 6/1011 (0%)
 Frame = -1

Query: 3015 AECFYCHKSGHWKRNCPEYLASLNKDKQVVASSSGVFVTQNCFSINPT-SWVLDTGSGSH 2839
            A CFYC ++GHWKRNC +Y+  L K KQ   S+SG+ V     + +PT SWV DTGS +H
Sbjct: 253  AVCFYCKETGHWKRNCKKYMEDLKK-KQSTTSASGINVIDINLATSPTDSWVFDTGSVAH 311

Query: 2838 ICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSCYFVPTMMC 2659
             C  LQG+RR+R L  GE+ L+VGNGA VA +AVG   L LP+G +L LN+CY VPT+  
Sbjct: 312  SCKSLQGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQ 371

Query: 2658 NIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTHHTNKRKLS 2479
            N+IS S L  EGY F+  NN  +I        +  L N +Y+LN       +   +R+LS
Sbjct: 372  NVISASCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLS 431

Query: 2478 V-MNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFTGTGAR 2302
              +N  F+WHCRLGHINK+R+ +LHK G L  FDFES++TC+SCL GKMTK PFTG   R
Sbjct: 432  NDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSER 491

Query: 2301 VTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFIEYKNEV 2122
             ++LL L+H+DVCGPMS+ ARGGY YFITFTDDFSR+GY++LM+HKSE+ EKF E++NEV
Sbjct: 492  ASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEV 551

Query: 2121 ENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRNRTLLDMV 1942
            +N   K +K LRSDRGGEY+S EF   LK+ GI+ Q+TPP TPQ NGVSERRNRTLLDMV
Sbjct: 552  QNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMV 611

Query: 1941 RSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIWGCPAYV 1762
            RSMMS ++LP SFWGYALETAA  LNRVP+K+V K PYEIW G  P L+++KIWGC AYV
Sbjct: 612  RSMMSQSDLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYV 671

Query: 1761 KKQDPKKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEKEISGSMV 1582
            K+    KL  +S  C  VGYP+ ++GY FY+ ++ K+ V+RH  FLEKEFL + +SG  V
Sbjct: 672  KRLQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRV 731

Query: 1581 ELEEISEIQINTDNLXXXXXXXXXXXXXPLRR-YPRRSHAPKRQYDFFVEGCMSDHVI-D 1408
             LEE+ E                      +    PRRS   +R  D +      D ++ D
Sbjct: 732  HLEEVQETPETVSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDRYTGAEQRDILLLD 791

Query: 1407 DDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVIPIGSKWLFKKKLGV 1228
            +DEP +Y +A    DS  W  AMKSE++SMY N+VW L + P GV  I  KWLFKKK  +
Sbjct: 792  NDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADM 851

Query: 1227 DGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAHYNYEIWQMDVKTAF 1051
            DG    +KARLVAKGF+Q  G+DYDETFSPVAMLKSIRI+LAIAA+++YEIWQMDVKTAF
Sbjct: 852  DGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAF 911

Query: 1050 LNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNICFDDAIKEFGFIKNP 871
            LNG+L E +YM QP+GFV   S GK CKL K+IYGLKQASR WNI FD+ IK FGFIKN 
Sbjct: 912  LNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNE 971

Query: 870  DEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFSMKDLGEASCVLGIQ 691
            +E CVYK++ GS + FLILYVDDILLIGNDI  L++VK  L   FSMKDLGEA+ +LGI+
Sbjct: 972  EEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIR 1031

Query: 690  IYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKKMSPQTDEERKRMSL 511
            IYRDRSKR++GLSQS YI KVLKRF+M +SKKGF+P S GI+LSK   PQT +ER +M +
Sbjct: 1032 IYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGM 1091

Query: 510  IPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNILKYLKRTKELFLIY 331
            +PYASA+GSIMYAMLCTRPD++Y LS  SRYQS+ GE HW AVKNILKYL+RTK++FL+Y
Sbjct: 1092 VPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVY 1151

Query: 330  -GKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDTVADSTMEAEYIAA 154
             G+ DL +  +             S SG+VF LN GAVSWKSSKQDTVADST EAEYIAA
Sbjct: 1152 GGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAA 1211

Query: 153  NDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQKSRH 1
            ++AAKEAVW++KF+SEL V+ +   P+ LYCDN+ AIA  KEPRSHQKS+H
Sbjct: 1212 SEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKH 1262



 Score = 63.5 bits (153), Expect = 1e-06
 Identities = 34/114 (29%), Positives = 58/114 (50%)
 Frame = -2

Query: 3542 CLTIASMDLVHQRQHENMDVRSIFRNTEELYGEQPRQMKYAASWNLFQTKMTVGSSVGDH 3363
            CL +A+M    Q+Q+E+ D  +  +    ++  Q R  ++  S +LF  ++  G+ V  H
Sbjct: 78   CLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACRLVEGNPVSPH 137

Query: 3362 VLKMIVYVNXXXXXXXXXXXDRYIDIILQSLTPAYSRFISQFLMMKLEPTLPAL 3201
            V+KMI Y+            +   D+ILQSL P++  FI  + M  ++ TL  L
Sbjct: 138  VIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAEL 191


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score = 1064 bits (2752), Expect = 0.0
 Identities = 555/1022 (54%), Positives = 710/1022 (69%), Gaps = 17/1022 (1%)
 Frame = -1

Query: 3015 AECFYCHKSGHWKRNCPEYLASLNKDKQVVASSSGVF-VTQNCFSINPTSWVLDTGSGSH 2839
            A CFYC + GHWKR+CP+YL  + KD +V  S++G++ +++N  S N  SWVLDTG G H
Sbjct: 228  ANCFYCKEKGHWKRSCPKYLQDV-KDGKVKPSTAGIYTISKNSPSSN--SWVLDTGCGFH 284

Query: 2838 ICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSCYFVPTMMC 2659
            IC+ LQGL+ +R++  G + L +GN        +G + L L +   + L +C + P M  
Sbjct: 285  ICSDLQGLKESREVEHGRLNLIMGNRRSSPVTKIGVYSLVLSSDVSIELFNCCYSPEMAR 344

Query: 2658 NIISISLLDKEGYMFKLENNVMNI-VFNQKLIAYGTL-CNDIYILNQNTILNTHHTNK-R 2488
            NIIS   L ++G+ F  +NN+ +I VF   ++ +    C+ +Y   +      H  N   
Sbjct: 345  NIISFHALFRQGFHFSFDNNIGSISVFKNGILNFTAYPCDGVYETVECVDNLGHSVNYID 404

Query: 2487 KLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFTGTG 2308
              S +  A LWH RLGHI+K+R+ +L K G L+ FD +S D C+SCL GKMTK+PF G+ 
Sbjct: 405  STSGVEKACLWHSRLGHISKKRIAQLQKDGVLESFDLKSDDVCESCLLGKMTKSPFKGSF 464

Query: 2307 ARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFIEYKN 2128
             R   LL +IH+DVCGP  +  + G  +++TFTDDFSR+GY++L+KHKS+  EKF E+KN
Sbjct: 465  ERGEGLLDIIHTDVCGPFRSTTKDGTRFYVTFTDDFSRYGYIYLIKHKSDTFEKFKEFKN 524

Query: 2127 EVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRNRTLLD 1948
            EVENQ  +K+K+LRSDRGGEYLS EFL +LKE GI+SQ+TPP TPQLNGV+ERRNRTLLD
Sbjct: 525  EVENQLGRKIKMLRSDRGGEYLSIEFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTLLD 584

Query: 1947 MVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIWGCPA 1768
            MVRSMMS A LP  FWGYALETAAH+LN VPTK V K P+E+W G  P L +IK+WGC A
Sbjct: 585  MVRSMMSRASLPIHFWGYALETAAHILNLVPTKKVAKTPHEMWTGKVPSLAHIKVWGCEA 644

Query: 1767 YVKKQDPKKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEKEISGS 1588
            +V+++   KL  RS  C F+GYP+ S GYLFY   E  + V+R A F E+E + KE SGS
Sbjct: 645  FVRRETQDKLAERSERCFFLGYPKQSFGYLFYRPSEDVVFVARRAVFRERELIFKEDSGS 704

Query: 1587 MVELEEISEIQIN-----TDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQYDFFV----E 1435
             ++LEEI E   +     T N                 R   R   P   Y F +    +
Sbjct: 705  TIDLEEIQESSDDATLGETSNQHEEEVPVGPTDVSLPLRRSGRVSMPPEFYGFHITSDGD 764

Query: 1434 GCMSDH-VIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVW-ILDNTPKGVIPIG 1261
              +SD  +I+ DEP +Y +A    +S  W +AM SE+ SMY N+VW ++DN P G   +G
Sbjct: 765  TFVSDRTLINLDEPANYQEAVAGPESAKWKEAMDSEIKSMYDNQVWNLVDNVP-GRKTVG 823

Query: 1260 SKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAHYNY 1084
             KW+FKKK  +DGK  TFKARLVAKGF Q PG+DYDETFSPVA +KSIRI+LAIAA ++Y
Sbjct: 824  CKWIFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDY 883

Query: 1083 EIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNICFDD 904
            EIWQMDVKTAFLNG L E +YM QPEGFV +    K CKL ++IYGLKQASR WN+CF +
Sbjct: 884  EIWQMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHE 943

Query: 903  AIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFSMKD 724
             +KEFGF ++ DE CVY +  GSIV+FL+LYVDDILL+GNDI +LQ VK WL K F+MKD
Sbjct: 944  KVKEFGFSRSEDESCVYVKASGSIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKD 1003

Query: 723  LGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKKMSP 544
            LGEA+ +LGI+I RDR KR++GLSQ  Y+ KVLKRFSMENSKKG +P      LSK  SP
Sbjct: 1004 LGEAAYILGIRILRDRKKRLIGLSQGTYLEKVLKRFSMENSKKGELPIQSNAKLSKTQSP 1063

Query: 543  QTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNILKY 364
             TDEE   MS +PYASAVGSIMYAM CTRPD+A+ LS+VSRYQ N G  HW AVKNILKY
Sbjct: 1064 STDEEIAEMSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVKNILKY 1123

Query: 363  LKRTKELFLIYGKSD-LQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDTVA 187
            L+RTK + L+ G SD L++E +             S SG+VF LN GAV+WKSSKQ+TVA
Sbjct: 1124 LRRTKNMVLVLGGSDTLRVEGYTDASFQTDRDSGRSQSGWVFLLNGGAVTWKSSKQETVA 1183

Query: 186  DSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQKS 7
            DST E+EYIAA++A+KEA W++ F+ +L VVP+I++P+ L+CDN  A+ALTKEPR H KS
Sbjct: 1184 DSTCESEYIAASEASKEAAWLKNFIGDLGVVPSIQEPLELFCDNEGAVALTKEPRDHGKS 1243

Query: 6    RH 1
            RH
Sbjct: 1244 RH 1245


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score = 1053 bits (2722), Expect = 0.0
 Identities = 530/908 (58%), Positives = 661/908 (72%), Gaps = 7/908 (0%)
 Frame = -1

Query: 2703 ILILNSCYFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQ 2524
            +L L +CY+VP +  NIIS+S LD EG+ F ++N   +   +        L N +++LNQ
Sbjct: 2    VLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQ 61

Query: 2523 NTILNTHHTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLK 2344
            +  +    T K K + +N  FLWHCRLGHIN++ + +LH  G L+ FD+ESY+TC+SCL 
Sbjct: 62   SMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLL 121

Query: 2343 GKMTKTPFTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHK 2164
            GKMTK PFTG   R ++LLGLIH+DVCGPMST ARG Y YFITFTDDFSR+GYV+LMKHK
Sbjct: 122  GKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHK 181

Query: 2163 SEACEKFIEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLN 1984
            S++ E F E++NEV+NQ  K +K LRSDRGGEYLS  F   L+E GI+SQ+TPP TPQ N
Sbjct: 182  SKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWN 241

Query: 1983 GVSERRNRTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKP 1804
            GVSERRNRTLLDMVRSMMS+ +LP  FWGYALET+A +LNR P+K+V K PYEIW G  P
Sbjct: 242  GVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKVP 301

Query: 1803 HLNYIKIWGCPAYVKKQDPKKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFL 1624
            +L+++KIWGC +Y K+    KL  +S  C FVGYP+ ++GY FYH  + K+ V R+  FL
Sbjct: 302  NLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAFL 361

Query: 1623 EKEFLEKEISGSMVELEEISEIQ--INTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            E+EFL K  SGS V LEE+ E Q  + T                 +    RRS   + + 
Sbjct: 362  EREFLSKGTSGSKVLLEEVREPQGDVPTSQEEHQLDLRRVVEPILVEPEVRRSERSRHEP 421

Query: 1449 DFFVEGCMSDH---VIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPK 1279
            D F +  M DH   +I+ DEP SY +A    DS  W +A KSEM+SM  NKVW L + P 
Sbjct: 422  DRFRDWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPD 481

Query: 1278 GVIPIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAI 1102
            GV PI  KW+FKKK+ +DG  + +KA LVAKG++Q  G+DYDET+SPVAMLKSIRILLA 
Sbjct: 482  GVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLAT 541

Query: 1101 AAHYNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRW 922
            AAHY+YEIWQMDVKTAFLNG+LEE +YMTQPEGF V  ++ K CKL ++IYGLKQASR W
Sbjct: 542  AAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSW 601

Query: 921  NICFDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSK 742
            N+ F++AIKEF FI+N +EPCVYK+  GS V+FL+LYVDDILL+GNDI  LQ+VK WL  
Sbjct: 602  NLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGS 661

Query: 741  RFSMKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISL 562
             FSMKD+GEA+ +LGI+IYRDR  +++GLSQ  YI KVL RF+M +SKKGFIP S GI+L
Sbjct: 662  CFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITL 721

Query: 561  SKKMSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAV 382
            SK   P T +ER+RMS IPYASA+GSIMYAML TRPD+A  LS+ SRYQS+ GE HW  V
Sbjct: 722  SKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVV 781

Query: 381  KNILKYLKRTKELFLIYGKS-DLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSS 205
            +NI KYL+RTK+ FL+YG S +L +  +             S SG+ F LN GAVSWKS+
Sbjct: 782  RNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKST 841

Query: 204  KQDTVADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEP 25
            KQ TVADST EAEYIAA++AAKE VW+RKF++EL VVP+I  P+ LYCDNN AIA  KEP
Sbjct: 842  KQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEP 901

Query: 24   RSHQKSRH 1
            +SHQKS+H
Sbjct: 902  KSHQKSKH 909


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score = 1039 bits (2687), Expect = 0.0
 Identities = 544/1021 (53%), Positives = 691/1021 (67%), Gaps = 17/1021 (1%)
 Frame = -1

Query: 3012 ECFYCHKSGHWKRNCPEYLASLNKDKQVVASSSGVFVTQNCF-SINPTSWVLDTGSGSHI 2836
            +CF+C++ GHWKRNCP+YLA   K ++       + V + C    + ++W+LD+G+ +HI
Sbjct: 253  KCFHCNQDGHWKRNCPKYLAE-KKAEKATQGKYDLLVVETCLVECDASTWILDSGATNHI 311

Query: 2835 CNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSCYFVPTMMCN 2656
            C   Q     +KL  GE+TL+VG G  V+A AVGD  L   + + LIL    +VP M  N
Sbjct: 312  CFSFQETSSWKKLKEGEITLKVGTGEVVSAEAVGDLTLFFQD-RYLILKDVLYVPLMKRN 370

Query: 2655 IISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQ---NTILNTH-----H 2500
            +ISI+ + +  Y    E N + I+     I      N++Y L     N +LNT       
Sbjct: 371  LISIACILEHIYTISFEVNEVFILCKGIQICSAIRENNLYKLRPTRANVVLNTEMFRTLE 430

Query: 2499 TNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPF 2320
            T  +K  V ++A+LWH RLGHIN  R+  L K G L+  +  S   C+SCL+GKMTK  F
Sbjct: 431  TQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSF 490

Query: 2319 TGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFI 2140
            TG G R    L L+HSD+CGPM+  ARGGY YFI+F DDFSR+G+V+L+ HKSE+ EKF 
Sbjct: 491  TGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFK 550

Query: 2139 EYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRNR 1960
            EYK EVEN+  K +K LRSDRGGEY+ S+F  +L E GI SQ++ P TPQ NGVSERRNR
Sbjct: 551  EYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNR 610

Query: 1959 TLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIW 1780
            TLLDMVRSMMS A+LP SFWGYALETA H+LN VP+K+V + PYE+W G K  L Y +IW
Sbjct: 611  TLLDMVRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIW 670

Query: 1779 GCPAYVKKQDPKKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEKE 1600
            GCPA+V  Q+PKKLE RS LC FVGYP+ S+G LFYH  E K+ VS +ATFLE++     
Sbjct: 671  GCPAHVLVQNPKKLEPRSKLCLFVGYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNH 730

Query: 1599 ISGSMVELEEI----SEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQYDFFVEG 1432
               S + L+E+    ++   ++  +                R PRRS     Q + ++  
Sbjct: 731  QPRSKIVLKEMFKNATDKPSSSTKVVDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGL 790

Query: 1431 CMSDHVIDDD---EPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVIPIG 1261
              +  +I DD   +PL+Y QA    D   W  AM  EM+SMY N VW L + P  V PIG
Sbjct: 791  VETQIIIPDDGVEDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIG 850

Query: 1260 SKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAHYNY 1084
             KW++K+K    GK +TFKARLVAKG+ Q+ G+DY+ETFSPVAMLKSIRILL+IA  YNY
Sbjct: 851  CKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNY 910

Query: 1083 EIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNICFDD 904
            EIWQMDVKTAFLNG+LEE IYM QPEGF+      K CKL K+IYGLKQASR WNI FD 
Sbjct: 911  EIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDT 970

Query: 903  AIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFSMKD 724
            AIK +GF +N DEPCVYK+I+ S+V+FLILYVDDILLIGND+  L  VK WL+ +F MKD
Sbjct: 971  AIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKD 1030

Query: 723  LGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKKMSP 544
            LGEA  +LGIQI R+R  + L +SQ+ YI KVL R+ M+NSKKG +P   GI LSK+  P
Sbjct: 1031 LGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCP 1090

Query: 543  QTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNILKY 364
            +T +E + M  IPY+SAVGS+MYAMLCTRPDI Y++ +VSRYQSN G +HW AVKNILKY
Sbjct: 1091 KTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKY 1150

Query: 363  LKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDTVAD 184
            L+RT+   L+YG  DL L  +             S SG VFTLN GAV W+S KQ  +AD
Sbjct: 1151 LRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIAD 1210

Query: 183  STMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQKSR 4
            STMEAEY+AA +AAKEAVW+RKFL++LEVVP +  P+ LYCDN+ A+A +KEPRSH++ +
Sbjct: 1211 STMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKRGK 1270

Query: 3    H 1
            H
Sbjct: 1271 H 1271


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  981 bits (2537), Expect = 0.0
 Identities = 507/902 (56%), Positives = 636/902 (70%), Gaps = 16/902 (1%)
 Frame = -1

Query: 2658 NIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQN--TILNTHHTNKRK 2485
            N+IS S L  EGY F+  +N  ++ +N     +  + N +YI+N +  ++ N +   +R 
Sbjct: 337  NVISTSCLQAEGYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGCSVYNINAKRQRP 396

Query: 2484 LSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFTGTGA 2305
             + +N  F+WHC LGHIN++R+ +LH+ G L  FDFES+ TC+SCL GKMTK PFTG   
Sbjct: 397  NN-LNPTFIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSE 455

Query: 2304 RVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFIEYKNE 2125
            R +ELLGL+H+DVCGPMS+ ARGG+ YFITFTD+FSR+GYV+LM+HKSE+ EKF E++NE
Sbjct: 456  RASELLGLVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNE 515

Query: 2124 VENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRNRTLLDM 1945
            V+N   K +K LRSDRGGEYLS E+   LKE GI+ Q+TPP TPQ N VSERRNR LLDM
Sbjct: 516  VQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDM 575

Query: 1944 VRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIWGCPAY 1765
            VRSMMS  ++P SFWGYALETAA  LNRVP+K+V K PYEIW G +P L+++KIW C   
Sbjct: 576  VRSMMSQTDMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCC--- 632

Query: 1764 VKKQDPKKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEKEISGSM 1585
                                    ++GY FY+ +E K+ V+RH  FLEKEF+ ++ SGSM
Sbjct: 633  ----------------------EETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSM 670

Query: 1584 VELEEISEIQINTDNLXXXXXXXXXXXXXPL------------RRYPRRSHAPKRQYDFF 1441
            V L+EI E   N                               RR  R    P R Y   
Sbjct: 671  VRLKEIQETPENASTSTQPQVEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPAR-YALL 729

Query: 1440 VEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVIPIG 1261
              G     ++D+DEP +Y +A    D+  W  AMKSE++SM+ N+VW L + P GV  I 
Sbjct: 730  TSGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIE 789

Query: 1260 SKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAHYNY 1084
             KW+FKK   VDG    + ARLVAKGFRQ  G+DYDETFSPVAMLKSIRI+LAIAA+++Y
Sbjct: 790  CKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDY 849

Query: 1083 EIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNICFDD 904
            EIWQMDVKTAFLNG+L+E +YMTQP+GFV   S+ K CKL K+IY LKQASR WNI FD+
Sbjct: 850  EIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDE 909

Query: 903  AIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFSMKD 724
             +K  GF+KN +EPCVYK+I GS + FLILYVDDILLIGNDI  L++VK  L   FSMKD
Sbjct: 910  VVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKD 969

Query: 723  LGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKKMSP 544
            LGEA+ +LGI+IYRDRSKR++GLSQS YI KVLKRF+M++SKKGF+P S GI+L K   P
Sbjct: 970  LGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCP 1029

Query: 543  QTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNILKY 364
            QT +ER +MS+IPYASA+GSIMYAMLCTR D++Y LS  SRYQS+ GE HW AVKNILKY
Sbjct: 1030 QTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKY 1089

Query: 363  LKRTKELFLIYGK-SDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDTVA 187
            L+RTK++FL+YG+  +L +  +             S SG+VF LN GAVSWKSSKQDTVA
Sbjct: 1090 LRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVA 1149

Query: 186  DSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQKS 7
            DST EAEYIAA++AAKEAVW++KF+S+L V+ +   P+ LYCDN+ AIA  KEPRSHQKS
Sbjct: 1150 DSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQKS 1209

Query: 6    RH 1
            +H
Sbjct: 1210 KH 1211



 Score = 66.6 bits (161), Expect = 1e-07
 Identities = 38/114 (33%), Positives = 57/114 (50%)
 Frame = -2

Query: 3542 CLTIASMDLVHQRQHENMDVRSIFRNTEELYGEQPRQMKYAASWNLFQTKMTVGSSVGDH 3363
            CL +A+M    QRQ+E +D  +I      ++ +Q R  ++  S +LF  ++  G+ V  H
Sbjct: 144  CLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNLVSPH 203

Query: 3362 VLKMIVYVNXXXXXXXXXXXDRYIDIILQSLTPAYSRFISQFLMMKLEPTLPAL 3201
            V+KMI Y             +   D+ILQSL P++  FI  F M  L  TL  L
Sbjct: 204  VIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAEL 257


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  973 bits (2516), Expect = 0.0
 Identities = 502/894 (56%), Positives = 631/894 (70%), Gaps = 16/894 (1%)
 Frame = -1

Query: 2634 DKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQN--TILNTHHTNKRKLSVMNDAF 2461
            + EGY F+  +N  ++ +N     +  + N +YI+N +  ++ N +   +R  + +N  F
Sbjct: 258  ETEGYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGCSVYNINAKRQRPNN-LNPTF 316

Query: 2460 LWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFTGTGARVTELLGL 2281
            +WHC LGHIN++R+ +LH+ G L  FDFES+ TC+SCL GKMTK PFTG   R +ELLGL
Sbjct: 317  IWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGL 376

Query: 2280 IHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFIEYKNEVENQTSKK 2101
            +H+DVCGPMS+ ARGG+ YFITFTD+FSR+GYV+LM+HKSE+ EKF E++NEV+N   K 
Sbjct: 377  VHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKT 436

Query: 2100 VKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRNRTLLDMVRSMMSNA 1921
            +K LRSDRGGEYLS E+   LKE GI+ Q+TPP TPQ N VSERRNR LLDMVRSMMS  
Sbjct: 437  IKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQT 496

Query: 1920 ELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIWGCPAYVKKQDPKK 1741
            ++P SFWGYALETAA  LNRVP+K+V K PYEIW G +P L+++KIW C           
Sbjct: 497  DMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCC----------- 545

Query: 1740 LEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEKEISGSMVELEEISE 1561
                            ++GY FY+ +E K+ V+RH  FLEKEF+ ++ SGSMV L+EI E
Sbjct: 546  --------------EETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQE 591

Query: 1560 IQINTDNLXXXXXXXXXXXXXPL------------RRYPRRSHAPKRQYDFFVEGCMSDH 1417
               N                               RR  R    P R Y     G     
Sbjct: 592  TPENASTSTQPQVEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPAR-YALLTSGQRDIL 650

Query: 1416 VIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVIPIGSKWLFKKK 1237
            ++D+DEP +Y +A    D+  W  AMKSE++SM+ N+VW L + P GV  I  KW+FKK 
Sbjct: 651  LLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKM 710

Query: 1236 LGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAHYNYEIWQMDVK 1060
              VDG    + ARLVAKGFRQ  G+DYDETFSPVAMLKSIRI+LAIAA+++YEIWQMDVK
Sbjct: 711  TDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVK 770

Query: 1059 TAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNICFDDAIKEFGFI 880
            TAFLNG+L+E +YMTQP+GFV   S+ K CKL K+IY LKQASR WNI FD+ +K  GF+
Sbjct: 771  TAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGFV 830

Query: 879  KNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFSMKDLGEASCVL 700
            KN +EPCVYK+I GS + FLILYVDDILLIGNDI  L++VK  L   FSMKDLGEA+ +L
Sbjct: 831  KNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYIL 890

Query: 699  GIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKKMSPQTDEERKR 520
            GI+IYRDRSKR++GLSQS YI KVLKRF+M++SKKGF+P S GI+L K   PQT +ER +
Sbjct: 891  GIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNK 950

Query: 519  MSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNILKYLKRTKELF 340
            MS+IPYASA+GSIMYAMLCTR D++Y LS  SRYQS+ GE HW AVKNILKYL+RTK++F
Sbjct: 951  MSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMF 1010

Query: 339  LIYGK-SDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDTVADSTMEAEY 163
            L+YG+  +L +  +             S SG+VF LN GAVSWKSSKQDTVADST EAEY
Sbjct: 1011 LVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEY 1070

Query: 162  IAANDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQKSRH 1
            IAA++AAKEAVW++KF+S+L V+ +   P+ LYCDN+ AIA  KEPRSHQKS+H
Sbjct: 1071 IAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQKSKH 1124



 Score = 66.6 bits (161), Expect = 1e-07
 Identities = 38/114 (33%), Positives = 57/114 (50%)
 Frame = -2

Query: 3542 CLTIASMDLVHQRQHENMDVRSIFRNTEELYGEQPRQMKYAASWNLFQTKMTVGSSVGDH 3363
            CL +A+M    QRQ+E +D  +I      ++ +Q R  ++  S +LF  ++  G+ V  H
Sbjct: 77   CLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNLVSPH 136

Query: 3362 VLKMIVYVNXXXXXXXXXXXDRYIDIILQSLTPAYSRFISQFLMMKLEPTLPAL 3201
            V+KMI Y             +   D+ILQSL P++  FI  F M  L  TL  L
Sbjct: 137  VIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAEL 190


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  886 bits (2289), Expect = 0.0
 Identities = 471/903 (52%), Positives = 595/903 (65%), Gaps = 17/903 (1%)
 Frame = -1

Query: 2658 NIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQN--TILNTHHTNKRK 2485
            N+IS S L  EGY F+  +N  ++ +N     +  + + +YI+N +  +I N +   ++ 
Sbjct: 848  NVISASCLQAEGYGFRSVDNGCSVYYNDIFYFHAPMMSGLYIVNLDGCSIYNIN-AKRQG 906

Query: 2484 LSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFTGTGA 2305
             + +N  F+WHCRLGHIN++R+ +LH+ G L   DFES++TC+SCL GKMTK PFTG   
Sbjct: 907  PNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSE 966

Query: 2304 RVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFIEYKNE 2125
            R +ELL L+H+DVCGPMS+ AR G+ YFITFTDDFSR+GYV+LM+HKSE+ EKF E++NE
Sbjct: 967  RTSELLVLVHTDVCGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNE 1026

Query: 2124 VENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRNRTLLDM 1945
            V+N   K +K LRSD GGEYLS EF   LK  GI+ Q+TPP TPQ NGVSERRNRTLL+M
Sbjct: 1027 VQNHLRKTIKYLRSDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNM 1086

Query: 1944 VRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIWGCPAY 1765
            VRSMMS   L  SFWGYALETAA  LNRVP+K+V K PYEIW G +P L+++KIWGC  Y
Sbjct: 1087 VRSMMSQTNLLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVY 1146

Query: 1764 VKKQDPKKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEKEISGSM 1585
            VK+    KL  +S  C FVGYP+ ++GY  Y+ +E K+ V+RH  FL+KEF+ ++ SGS+
Sbjct: 1147 VKRLQSDKLTPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFISRKDSGSI 1206

Query: 1584 VELEEISEIQINTDNLXXXXXXXXXXXXXP-------------LRRYPRRSHAPKRQYDF 1444
            V LEEI E   N                                RR  R    P R Y  
Sbjct: 1207 VRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPAR-YAL 1265

Query: 1443 FVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVIPI 1264
               G     ++D+DEP +Y +A    DS  W  AMKSE++SM+ N+VW L + P GV  I
Sbjct: 1266 LTIGQRDILLLDNDEPTTYEEAMVGPDSEKWPGAMKSEIESMHVNQVWNLVDPPDGVKAI 1325

Query: 1263 GSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAHYN 1087
              KW+FKKK  VDG    +KARLVAKGFRQ  G+DYDETFSPVAMLKSI+I+LAIAA+++
Sbjct: 1326 ECKWVFKKKTYVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIQIVLAIAAYFD 1385

Query: 1086 YEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNICFD 907
            YEIWQMDVKTAFLNG+L+E                       K+IYGLKQASR WNI FD
Sbjct: 1386 YEIWQMDVKTAFLNGNLDED----------------------KSIYGLKQASRSWNIRFD 1423

Query: 906  DAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFSMK 727
            + +K  GF+KN +EPCVYK+I GS + FLILYVDDILLIGNDI  L++VK  L   FSMK
Sbjct: 1424 EVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMK 1483

Query: 726  DLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKKMS 547
            DLGEA+ ++GI+IYRDRSKR++GLSQS YI KVLKRF+M++SKKGF+P S GI+  K   
Sbjct: 1484 DLGEAAYIMGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINHGKNQC 1543

Query: 546  PQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNILK 367
            PQT +ER +MS+IPYA A+GSIMYAMLCTR D++Y LS  SRYQS+ GE HW AVKNILK
Sbjct: 1544 PQTTDERNKMSVIPYAWAIGSIMYAMLCTRIDVSYALSATSRYQSDPGESHWIAVKNILK 1603

Query: 366  YLKRTKELFLIY-GKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDTV 190
            YL+RTK++FL+Y G+ +L +  +               SG+VF LN  AVSWKS      
Sbjct: 1604 YLRRTKDMFLVYGGQEELVVNGYIDASFQTDKDDFRLQSGFVFCLNGRAVSWKS------ 1657

Query: 189  ADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQK 10
                                          V+ +   P+ LYCDN+ AI   KE RSHQK
Sbjct: 1658 ------------------------------VMTSASSPMNLYCDNSGAIVQAKEHRSHQK 1687

Query: 9    SRH 1
            S+H
Sbjct: 1688 SKH 1690


>emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
          Length = 1356

 Score =  829 bits (2141), Expect = 0.0
 Identities = 462/1061 (43%), Positives = 627/1061 (59%), Gaps = 58/1061 (5%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLASLNKDKQVVASSSGVFVTQNCFSINPTS-----WVLDTGSG 2845
            CF+C+K GH K+ C +Y A   K         G+F+T  C  +N  S     W LD+G+ 
Sbjct: 247  CFFCNKPGHTKKECTKYAAWRVK--------KGMFLTLVCSEVNLASVSRNTWWLDSGAT 298

Query: 2844 SHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSCYFVPTM 2665
            +HIC  +QG    RK    E  + VG+G  V   A+G F L L +G  L L   + VP+ 
Sbjct: 299  THICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRLLLKSGYFLDLIDTFXVPSF 358

Query: 2664 MCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTL--CNDIYILNQNTILN-THHTN 2494
              N+IS+S+LDK GY     NN   +  N   +  G L   +++Y+L      N T H  
Sbjct: 359  RRNLISVSVLDKSGYCCSFGNNKFTLSINSNAVGTGLLNVYDNLYLLETVPSYNETLHVE 418

Query: 2493 ----KRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKT 2326
                KRKL+  N A LWH RLGHI+K R+  L   G LD  DF  +D C  C+KGK TKT
Sbjct: 419  SRGTKRKLNKDNSASLWHKRLGHISKSRVERLVSDGILDSLDFSDFDICVECIKGKQTKT 478

Query: 2325 PFTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEK 2146
               G   R T++L LIH+D+CGP  T +  G  YFITF DD+SR+GY+FL+  KS++ + 
Sbjct: 479  KKLGAN-RATDVLELIHTDICGPYPTASWNGQQYFITFIDDYSRYGYLFLIHEKSQSLDV 537

Query: 2145 FIEYKNEVENQTSKKVKILRSDRGGEYLS----------SEFLGFLKENGILSQVTPPFT 1996
            F  +K EVE Q +K++K +RSDRGGEY              F  +L+E GI+ Q T P +
Sbjct: 538  FKTFKAEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQRPGPFAKYLEECGIVPQYTMPGS 597

Query: 1995 PQLNGVSERRNRTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWN 1816
            P +NGV+ERRNRTL DMVRSM+S++ LP   WG AL+TAA++LNRVPTKA  K PYE+W 
Sbjct: 598  PSMNGVAERRNRTLKDMVRSMISHSTLPEKLWGEALKTAAYILNRVPTKAAAKTPYELWT 657

Query: 1815 GMKPHLNYIKIWGCPAYVKKQDP--KKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVS 1642
            G KP L +  IWGCPA  +   P  KKL++++V   F+GY   S+G+ FY    + I  +
Sbjct: 658  GRKPSLKHFHIWGCPAEARPYKPHEKKLDSKTVSSYFIGYAERSRGFKFYDPAIRSIFET 717

Query: 1641 RHATFLE----------KEFLEKEISGSMVELEEI--------SEIQIN---TDNLXXXX 1525
              ATF E          +  + +E  GS +  + +         E+ ++   TDN+    
Sbjct: 718  GTATFFEDVEFGGRNQARNIVFEEEEGSTIAFDNVQVSLPIIDQEVNLDPQPTDNIVQPL 777

Query: 1524 XXXXXXXXXPLRRYP------RRSHAPKR-----QYDFFVEGCMSDHVIDDDEPLSYLQA 1378
                        + P      RRS   +R      Y  +++    +  + +D+P+++ QA
Sbjct: 778  IANEDIAPEEQTQQPQENMPLRRSTRERRNAISDDYIVYLQEREVESGMMEDDPINFQQA 837

Query: 1377 SQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVIPIGSKWLFKKKLGVDGK-ETFKAR 1201
             +S +S  W +AM  E  SM  NKVW L   P G  PIG KW+FK K   +G  E +KAR
Sbjct: 838  MKSSNSHKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKAR 897

Query: 1200 LVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAHYNYEIWQMDVKTAFLNGDLEECIY 1021
            LVAKGF Q+ G+D+ ETFSPV+   S RI++A+ AHY+ E+ QMDVKTAFLNGD++E IY
Sbjct: 898  LVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAFLNGDIDETIY 957

Query: 1020 MTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNICFDDAIKEFGFIKNPDEPCVYKRII 841
            M QPE FV   S    CKL K+IYGLKQASR+W   F   I  +GF  N  + CVY +  
Sbjct: 958  MVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSYGFEANLMDECVYHKFS 1017

Query: 840  GSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFSMKDLGEASCVLGIQIYRDRSKRML 661
            GS   FL+LYVDDILL  NDIS L   K +LSK F MKDLG+AS VLGIQI+RDRS+ +L
Sbjct: 1018 GSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGIL 1077

Query: 660  GLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKKMSPQTDEERKRMSLIPYASAVGSI 481
            GLSQ  YI KVL+R+ M+NSK G  P + G   S    P+   E + M  IPYASAVGS+
Sbjct: 1078 GLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPYASAVGSL 1137

Query: 480  MYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNILKYLKRTKELFLIYGKSD-LQLEA 304
            MYA +CTRPDIAY + ++ RY SN G +HWKA K +++YL+RTKE  L Y + D L+L  
Sbjct: 1138 MYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKAAKRVMRYLQRTKEYMLTYRRLDQLELIG 1197

Query: 303  FXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDTVADSTMEAEYIAANDAAKEAVWM 124
            +             S SGY++ L  GA+SW+S+KQ  V  STMEAE++A  +A+ + +W+
Sbjct: 1198 YSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWL 1257

Query: 123  RKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQKSRH 1
            R F++ L V+  I+ P+ ++CDN +A+  +   RS  KS++
Sbjct: 1258 RNFVTGLRVLDGIERPLKIFCDNKSAVLYSNNNRSSTKSKY 1298


>emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]
          Length = 1354

 Score =  773 bits (1997), Expect = 0.0
 Identities = 439/1044 (42%), Positives = 599/1044 (57%), Gaps = 41/1044 (3%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLASLNKDKQVVASSSGVFVTQNCFSINPTS-----WVLDTGSG 2845
            CF+C+K GH K+ C +Y A   K         G+F+T  C  +N  S     W LD+G+ 
Sbjct: 292  CFFCNKPGHTKKECTKYAAWRVK--------KGMFLTLVCSEVNLASVSRNTWWLDSGAT 343

Query: 2844 SHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSCYFVPTM 2665
            +HIC  +QG    RK    E  + VG+G  V   A+G F L L +G  L L   + VP+ 
Sbjct: 344  THICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRLLLKSGYFLDLIDTFIVPSF 403

Query: 2664 MCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTL--CNDIYILNQNTILN-THHTN 2494
              N+IS+S+LDK GY     NN   +  N   +  G L   +++Y+L      N T H  
Sbjct: 404  RQNLISVSVLDKSGYCCSFGNNKFTLSINSNAVGTGLLNVYDNLYLLETVPSYNETLHVE 463

Query: 2493 ----KRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKT 2326
                KRKL+  N A LWH RLGHI+K R+  L   G LD  DF  +D C  C+KGK TKT
Sbjct: 464  SRGTKRKLNKDNSASLWHKRLGHISKSRVERLVSDGILDSLDFSDFDICVECIKGKQTKT 523

Query: 2325 PFTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEK 2146
               G   R T++L LIH+D+ GP  T +  G  YFITF DD+SR+GY+FL+  KS++ + 
Sbjct: 524  KKLGAN-RATDVLELIHTDIXGPYPTASWNGQXYFITFIDDYSRYGYLFLIHEKSQSLDV 582

Query: 2145 FIEYKNEVENQTSKKVKILRSDRGGEYLS----------SEFLGFLKENGILSQVTPPFT 1996
            F  +K EVE Q +K++K +RSDRGGEY              F  +L+E GI+ Q T P +
Sbjct: 583  FKTFKXEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQHPGPFAKYLEECGIVPQYTMPGS 642

Query: 1995 PQLNGVSERRNRTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWN 1816
            P +NGV+ERRNR L DMVRSM+S++ LP   WG AL+TAA++LNRVPTKA  K PYE+W 
Sbjct: 643  PSMNGVAERRNRILKDMVRSMISHSTLPEKLWGEALKTAAYILNRVPTKAAAKTPYELWT 702

Query: 1815 GMKPHLNYIKIWGCPAYVKKQDP--KKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVS 1642
            G KP L +  IWGCPA  +   P  KKL++++V   F+GY   S+G+ FY  D      +
Sbjct: 703  GRKPSLKHFHIWGCPAEARPYKPHEKKLDSKTVSSYFIGYAERSRGFKFY--DPAIRNQA 760

Query: 1641 RHATFLEKE--------------FLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXX 1504
            R+  F E+E               +++E++      + I +  I  +++           
Sbjct: 761  RNIVFEEEEGSTIAFDNVQVSLPIIDQEVNLDPQPTDNIVQPLIANEDIAPEEQTQQPQE 820

Query: 1503 XXPLRRYPR-RSHAPKRQYDFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEM 1327
               LRR  R R +A    Y  +++    +  + +D+P+++ QA +S +S  W +AM  E 
Sbjct: 821  NMSLRRSTRERRNAISDDYIVYLQEREVESGMMEDDPINFQQAMKSSNSQKWIEAMNEEY 880

Query: 1326 DSMYTNKVWILDNTPKGVIPIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDET 1150
             SM  NKVW L   P G  PIG KW+FK K   +G  E +KARLVAKGF Q+ G+D+ ET
Sbjct: 881  KSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARLVAKGFTQKEGIDFKET 940

Query: 1149 FSPVAMLKSIRILLAIAAHYNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKAC 970
            FSP                             F NGD++E IYM QPE FV   S    C
Sbjct: 941  FSP----------------------------RFSNGDIDETIYMVQPENFVSEDSKNMVC 972

Query: 969  KLLKAIYGLKQASRRWNICFDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLI 790
            KL K+IYGLKQASR+W   F   I  +GF  N  + CVY +  GS   FL+LYVDDILL 
Sbjct: 973  KLTKSIYGLKQASRQWYFKFHQIIVSYGFEANLMDECVYHKFSGSKYIFLVLYVDDILLA 1032

Query: 789  GNDISSLQAVKIWLSKRFSMKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSM 610
             NDIS L   K +LSK F MKDLG+AS VLGIQI+RDRS+ +LGLSQ  YI KVL+R+ M
Sbjct: 1033 TNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGM 1092

Query: 609  ENSKKGFIPASPGISLSKKMSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSL 430
            +NSK G  P + G   S    P+   E + M  IPYASAVGS+MYA +CTRPDIAY + +
Sbjct: 1093 QNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGM 1152

Query: 429  VSRYQSNHGEEHWKAVKNILKYLKRTKELFLIYGKSD-LQLEAFXXXXXXXXXXXXXSVS 253
            + RY SN G +HW+A K +++YL+RTKE  L Y + D L+L  +             S S
Sbjct: 1153 LGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLDQLELIGYSDSDFAGCQDSRRSTS 1212

Query: 252  GYVFTLNRGAVSWKSSKQDTVADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPV 73
            GY++ L  GA+SW+S+KQ  V  STMEAE++A  +A+ + +W+R F++ L V+  I+ P+
Sbjct: 1213 GYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWLRNFVTGLRVLDGIERPL 1272

Query: 72   PLYCDNNAAIALTKEPRSHQKSRH 1
             ++CDN +A+  +   RS  KS++
Sbjct: 1273 KIFCDNKSAVLYSNNNRSSTKSKY 1296


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  722 bits (1863), Expect = 0.0
 Identities = 375/684 (54%), Positives = 473/684 (69%), Gaps = 14/684 (2%)
 Frame = -1

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
            +  +++ + +N  F WHCRLGHIN++R+ +L++ G L  FDFES++TC+SCL GKMTK P
Sbjct: 134  NAKRQRPNDLNPTFSWHCRLGHINEKRMEKLYRDGLLHSFDFESFETCESCLLGKMTKAP 193

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
            FT      +ELL L+++DVCG MS+ ARG + YFITFT DFSR+GYV+LM+ KSE  EKF
Sbjct: 194  FTSQSEWASELLALVYTDVCGLMSSTARGDFGYFITFTGDFSRYGYVYLMRQKSETFEKF 253

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
             E++NEV+N   K +K LRSDRGG+YLS EF   LKE  I+ Q+T P TPQ NGVSERRN
Sbjct: 254  KEFQNEVQNHLGKTIKYLRSDRGGKYLSLEFGNHLKECRIVPQLTLPGTPQWNGVSERRN 313

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTLLDM+  + S                A  +N+VP+K+V K PYEIW G +P L+++KI
Sbjct: 314  RTLLDMLLGLRSR-------------DTAFTINKVPSKSVDKIPYEIWTGKRPSLSFLKI 360

Query: 1782 WGCPAYVKKQDPKKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEK 1603
            WGC  YVK+    KL  +S  C FVGY + ++GY FY+ +E K+ V+RH  FLEKEF+ +
Sbjct: 361  WGCEVYVKRLQSDKLTPKSDKCFFVGYHKETKGYYFYNREEGKVFVARHGVFLEKEFISR 420

Query: 1602 EISGSMVELEEISEI-----------QINTDNLXXXXXXXXXXXXXPL--RRYPRRSHAP 1462
            + SGSMV LEEI E            Q   D +              L  RR  R    P
Sbjct: 421  KDSGSMVRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEALASRRSKRIRRTP 480

Query: 1461 KRQYDFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTP 1282
             R Y     G     ++D+DEP  Y +A    DS  W  AMKS+++SM+ N+VW L + P
Sbjct: 481  AR-YALLTTGQRDILLLDNDEPTIYEEAMVGPDSEKWLGAMKSKIESMHVNQVWNLVDPP 539

Query: 1281 KGVIPIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLA 1105
             GV  I  KW+FKK   VDG    +KARLVAKGFRQ  G+DYDETFSPVAMLKSIRI+L 
Sbjct: 540  DGVKAIKCKWVFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLT 599

Query: 1104 IAAHYNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRR 925
            IAA+++YEIWQMDVKTA LNG+L+E +YMTQP+GFV   S+ K CKL K+IYGLK+ASR 
Sbjct: 600  IAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKKASRS 659

Query: 924  WNICFDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLS 745
            WNI FD  +K  GF+KN +EPCVYK+I GS + FLILYVD+ILLIGNDI  L++VK  L 
Sbjct: 660  WNIRFDKVVKALGFVKNEEEPCVYKKISGSALVFLILYVDEILLIGNDIPMLESVKTSLK 719

Query: 744  KRFSMKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGIS 565
              F MKDLGE +C+LGI+IYRDRSKR++GLSQS YI KVLKRF+M+NSKKGF+P S GI+
Sbjct: 720  NSFLMKDLGEPTCILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQNSKKGFLPMSHGIN 779

Query: 564  LSKKMSPQTDEERKRMSLIPYASA 493
            L K   PQT +ER +MS+IPYASA
Sbjct: 780  LGKNQCPQTTDERNKMSVIPYASA 803


>emb|CAN73613.1| hypothetical protein VITISV_023299 [Vitis vinifera]
          Length = 1815

 Score =  704 bits (1817), Expect = 0.0
 Identities = 399/930 (42%), Positives = 545/930 (58%), Gaps = 54/930 (5%)
 Frame = -1

Query: 2628 EGYMFKLENNVMNIVFNQKLIAYGTL--CNDIYILNQNTILN-THHTN----KRKLSVMN 2470
            +GY     NN   +  N   +  G L   +++Y+L      N T H      KRKL+  N
Sbjct: 340  DGYCCSFGNNRFALSINSNAVGTGLLNVYDNLYLLETVPSYNETLHVESRGTKRKLNKDN 399

Query: 2469 DAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFTGTGARVTEL 2290
             A LWH RLGHI+K R+  L   G LD  DF  +D C  C+KGK TKT   G   R T++
Sbjct: 400  SASLWHKRLGHISKSRVERLVSDGILDSLDFSDFDICVECIKGKQTKTKKLGAN-RATDV 458

Query: 2289 LGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFIEYKNEVENQT 2110
            L LIH+D+CGP  T +  G  YFITF DD+SR+GY+FL+  KS++ + F  +K EVE Q 
Sbjct: 459  LELIHTDICGPYPTASWNGQQYFITFIDDYSRYGYLFLIHEKSQSLDVFKTFKAEVELQL 518

Query: 2109 SKKVKIL-RSDRGGEYLS----------SEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
            +K++K + RSDRGGEY              F  +L+E GI+ Q T P +P +NGV+ERRN
Sbjct: 519  NKRIKSVGRSDRGGEYYGRYDGSGEQRPGPFAKYLEECGIVPQYTMPGSPSMNGVAERRN 578

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL DMVRSM+S++ LP   WG AL+TAA++LNRVPTKA  K PYE+W G KP L +  I
Sbjct: 579  RTLKDMVRSMISHSTLPEKLWGEALKTAAYILNRVPTKAAAKTPYELWTGRKPSLKHFHI 638

Query: 1782 WGCPAYVKKQDP--KKLEARSVLCKFVGYPRNSQGYLFYHIDEQKIIVSRHATFLE---- 1621
            WGCPA  +   P  KKL++++V   F+GY   S+G+ FY    + I  +  ATF E    
Sbjct: 639  WGCPAEARPYKPHEKKLDSKTVSXYFIGYAERSRGFKFYDPAIRSIFETGTATFFEDVEF 698

Query: 1620 ------KEFLEKEISGSMVELEEI--------SEIQIN---TDNLXXXXXXXXXXXXXPL 1492
                  +  + +E  GS +  + +         E+ ++   TDN+               
Sbjct: 699  GGRNQARNIVFEEEEGSTIAFDNVQVSLPIIDQEVNLDPQPTDNIVQPLIANXDIAPEEQ 758

Query: 1491 RRYP------RRSHAPKR-----QYDFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHD 1345
             + P      RRS   +R      Y  +++    +  + +D+P+++ QA +S +S  W +
Sbjct: 759  TQQPQENMPLRRSTRERRNAISDDYIVYLQEREVESGMMEDDPINFQQAMKSSNSQKWIE 818

Query: 1344 AMKSEMDSMYTNKVWILDNTPKGVIPIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPG 1168
            AM  E  SM  NKVW L   P G  PIG KW+FK K   +G  E +KARLVAKGF Q+ G
Sbjct: 819  AMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARLVAKGFTQKEG 878

Query: 1167 LDYDETFSPVAMLKSIRILLAIAAHYNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSG 988
            +D+ ETFSPV+     RI++A+ AHY+ E+ QMDVKT FLNGD++E IYM QPE FV   
Sbjct: 879  IDFKETFSPVSTKDFFRIIMALVAHYDLELHQMDVKTXFLNGDIDETIYMVQPENFVSED 938

Query: 987  SSGKACKLLKAIYGLKQASRRWNICFDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYV 808
            S     KL K+IYGLKQA                 + N  + CVY +  GS   FL+LYV
Sbjct: 939  SKNMVXKLTKSIYGLKQA--------------ISSVANLMDECVYHKFSGSKYIFLVLYV 984

Query: 807  DDILLIGNDISSLQAVKIWLSKRFSMKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKV 628
            DDILL  NDIS L   K +LSK F MKDLG+AS VLGIQI+RDRS+ +LGLSQ  YI KV
Sbjct: 985  DDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKV 1044

Query: 627  LKRFSMENSKKGFIPASPGISLSKKMSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDI 448
            L+ + M+NSK G  P + G   S    P+   E + M  IPYASAVGS+MYA +CTRPDI
Sbjct: 1045 LQXYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDI 1104

Query: 447  AYTLSLVSRYQSNHGEEHWKAVKNILKYLKRTKELFLIYGKSD-LQLEAFXXXXXXXXXX 271
            AY   ++ RY SN G +HW+A K +++YL+RTKE  L Y + D L++  +          
Sbjct: 1105 AYIXGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLDQLEIIGYSDSDFAGCQD 1164

Query: 270  XXXSVSGYVFTLNRGAVSWKSSKQDTVADSTMEAEYIAANDAAKEAVWMRKFLSELEVVP 91
               S SGY++ L  GA+SW+S+KQ     STMEAE++A  +A+ + +W+R F++ L V+ 
Sbjct: 1165 SRRSTSGYIYLLAGGAISWRSAKQTLXTSSTMEAEFVACYEASNQGIWLRNFVTGLRVLD 1224

Query: 90   TIKDPVPLYCDNNAAIALTKEPRSHQKSRH 1
             I+ P+ ++CDN +A+  +   RS  KS++
Sbjct: 1225 GIERPLKIFCDNKSAVLYSNNNRSSTKSKY 1254


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  682 bits (1761), Expect = 0.0
 Identities = 350/604 (57%), Positives = 436/604 (72%), Gaps = 9/604 (1%)
 Frame = -1

Query: 2415 ELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFTGTGARVTELLGLIHSDVCGPMSTMARG 2236
            +LH+ G L  FDFES++TC+SCL GK+TK PFTG   R +ELL L+H+DVCGPMS+ ARG
Sbjct: 3    KLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTARG 62

Query: 2235 GYSYFITFTDDFSRFGYVFLMKHKSEACEKFIEYKNEVENQTSKKVKILRSDRGGEYLSS 2056
            G+ YFI FTDDFSR+GYV+LM+HKSE+ EKF E+ NEV+N   K +K LRSDRGGEY S 
Sbjct: 63   GFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSL 122

Query: 2055 EFLGFLKENGILSQVTPPFTPQLNGVSERRNRTLLDMVRSMMSNAELPFSFWGYALETAA 1876
            EF   LKE GI+ Q+TPP TPQLNGVS+RRNRTLLDMVRSMMS  +LP SFWGYALETA 
Sbjct: 123  EFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALETAV 182

Query: 1875 HLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIWGCPAYVKKQDPKKL--EARSVLCKFVGY 1702
              +NRVP+K++ K PYEIW G +P L+++KIWGC  YVK+    KL  +++S  C FVGY
Sbjct: 183  FTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSKSDKCFFVGY 242

Query: 1701 PRNSQGYLFYHIDEQKIIVSRHATFLEKEFLEKEISGSMVELEEIS------EIQINTDN 1540
            P+ ++GY FY+ +E K+ V+RH  FLEK+F+ ++ SGSM   E  S      + + +   
Sbjct: 243  PKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSGSMETPENASTSTQPQQAEQDVVQ 302

Query: 1539 LXXXXXXXXXXXXXPLRRYPRRSHAPKRQYDFFVEGCMSDHVIDDDEPLSYLQASQSKDS 1360
                            RR  R    P R Y     G     ++ +DEP +Y +A     S
Sbjct: 303  QVEQVVVEPVVEAPASRRSERIRRTPAR-YALLTTGQCDILLLGNDEPTTYEEAMVGPGS 361

Query: 1359 VAWHDAMKSEMDSMYTNKVWILDNTPKGVIPIGSKWLFKKKLGVDGK-ETFKARLVAKGF 1183
              W  AMKS+++SM+ N+VW L +    V  I  KW+FKKK  VDG    +KARLVAKGF
Sbjct: 362  EKWLGAMKSKIESMHVNQVWNLVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARLVAKGF 421

Query: 1182 RQRPGLDYDETFSPVAMLKSIRILLAIAAHYNYEIWQMDVKTAFLNGDLEECIYMTQPEG 1003
            RQ  G++YDETFSPVAMLKSIRI+LAIAA+++YEIWQMDVKTAFL+G+L+E +YMTQP+G
Sbjct: 422  RQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKG 481

Query: 1002 FVVSGSSGKACKLLKAIYGLKQASRRWNICFDDAIKEFGFIKNPDEPCVYKRIIGSIVSF 823
            FV   S+ K CKL K+IYGLKQASR WNI FD+ IK  GF+KN +EPCVYK+I GS + F
Sbjct: 482  FVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNEEEPCVYKKINGSALMF 541

Query: 822  LILYVDDILLIGNDISSLQAVKIWLSKRFSMKDLGEASCVLGIQIYRDRSKRMLGLSQSR 643
            LILYVDDILLIGNDI  L++VK  L   FSMKDLGEA+ +LGI+IYRDRSKR++GLSQS 
Sbjct: 542  LILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQST 601

Query: 642  YIGK 631
            YI K
Sbjct: 602  YINK 605


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  660 bits (1703), Expect = 0.0
 Identities = 399/1018 (39%), Positives = 559/1018 (54%), Gaps = 24/1018 (2%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLA----------SLNKDKQVVASSSGVFVTQNCFSINP-TSWV 2863
            CF C + GH  R CP+             S N         SG       FS+N  T+W 
Sbjct: 242  CFVCGQIGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 2862 LDTGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSC 2683
            +DTG+  H+C  +  L  + ++  G  T+ +GNG+  +   VG   L   +GKI+ L + 
Sbjct: 302  VDTGANVHVCADIS-LFSSYQVARGS-TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 359

Query: 2682 YFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTH 2503
              VP++  N++S S L ++G+    E+N + +  +   I  G  C  ++  + +   N  
Sbjct: 360  QHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKS 419

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
              N    SV ++A +WH RL HIN   +  L     +  F       C SC++ K  + P
Sbjct: 420  -VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKP 478

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
                  R    L L+HSD+C     + +GG  YF+TF DD +RF YV+L+K K EA + F
Sbjct: 479  HKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYF 538

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
              YK EVENQ  +K+K LRSDRGGE+ S+EF  F +E+GI+ + TPP++P+ NG++ER+N
Sbjct: 539  KIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN 598

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL D+V +M+  A LP ++WG AL T+ H+LNRVP +   K PYEIW G KP L+Y++I
Sbjct: 599  RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRI 658

Query: 1782 WGCPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDEQ-------KIIVSRHAT 1630
            WGC A V     K  KL  ++V C F+GY  +S  Y F  +  +        II SR AT
Sbjct: 659  WGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDAT 718

Query: 1629 FLEKEFLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            F E  F  K+      +  EI    I                   +   PRRS   KRQ 
Sbjct: 719  FFESFFPMKDTHSGSNQPSEIIPSSITPPE--QTEHTHELVSEEDVSEAPRRS---KRQR 773

Query: 1449 DFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVI 1270
                 G      + DD P S  +A  S D+  W +A++SEMDS+  N  W +   P G  
Sbjct: 774  TAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCK 833

Query: 1269 PIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAH 1093
            P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LL++AA 
Sbjct: 834  PVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAAS 893

Query: 1092 YNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNIC 913
            +   + QMDVKTAFLNG+L+E IYM QP+GFVV G  GK CKLLK++YGLKQA ++W+  
Sbjct: 894  HGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEK 953

Query: 912  FDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFS 733
            FD  +   GF  N  + CVY R  G     L LYVDDIL+ G ++  +  VK +LSK F 
Sbjct: 954  FDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSKNFD 1013

Query: 732  MKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKK 553
            MKDLG A  +L I++ R  ++  + L QS Y+ K+L RF   +SK    P  P + L K 
Sbjct: 1014 MKDLGVADVILNIKLIRGENE--ITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRK- 1070

Query: 552  MSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNI 373
                   +R   + + Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A++ +
Sbjct: 1071 ------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 372  LKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDT 193
            ++YLK T EL L Y      LE +             + SGYVFTL  GAVSW+S KQ  
Sbjct: 1125 MRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTI 1184

Query: 192  VADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVP---LYCDNNAAIALTKE 28
            +  STMEAE  A + A  EA W+R  L +L   P ++ PVP   + CDN      T E
Sbjct: 1185 LTRSTMEAELTALDTATVEAEWLRDLLMDL---PVVEKPVPAILMNCDNQTTCEKTIE 1239


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  659 bits (1700), Expect = 0.0
 Identities = 399/1028 (38%), Positives = 562/1028 (54%), Gaps = 25/1028 (2%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLA----------SLNKDKQVVASSSGVFVTQNCFSINP-TSWV 2863
            CF C + GH  R CP+             S N         SG       FS+N  T+W 
Sbjct: 242  CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 2862 LDTGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSC 2683
            +DTG+  H+C  +  L  + ++  G  T+ +GNG+  +   VG   L   +GKI+ L + 
Sbjct: 302  VDTGANVHVCADIS-LFSSYQVARGS-TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 359

Query: 2682 YFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTH 2503
              VP++  N++S S L ++G+    E+N + +  +   I  G  C  ++  + +   N  
Sbjct: 360  QHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKS 419

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
              N    SV ++A +WH RL HIN   +  L     +  F       C SC++ K  + P
Sbjct: 420  -VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKP 478

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
                  R    L L+HSD+C     + +GG  YF+T  DD +RF YV+L+K K EA + F
Sbjct: 479  HKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYF 538

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
              YK EVENQ  +K+K LRSDRGGE+ S+EF  F +E+GI+ + TPP++P+ NG++ER+N
Sbjct: 539  KIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN 598

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL D+V +M+  A LP ++WG AL T+ H+LNRVP +   K PYEIW G KP L+Y++ 
Sbjct: 599  RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRT 658

Query: 1782 WGCPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDEQ-------KIIVSRHAT 1630
            WGC A V     K  KL  ++V C F+GY  +S  Y F  +  +        I+ SR AT
Sbjct: 659  WGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAT 718

Query: 1629 FLEKEFLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            F E  F  K+      +  EI    I                   +   PRRS   KRQ 
Sbjct: 719  FFESFFPMKDTHSGSNQPSEIIPSSITPPE--QTEHTHELVSEEDVSEAPRRS---KRQR 773

Query: 1449 DFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVI 1270
                 G      + DD P S  +A  S D+  W +A++SEMDS+  N  W +   P G  
Sbjct: 774  TAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCK 833

Query: 1269 PIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAH 1093
            P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LL++AA 
Sbjct: 834  PVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAAS 893

Query: 1092 YNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNIC 913
            +   + QMDVKTAFLNG+L+E IYM QP+GFV+ G  GK CKLLK++YGLKQA ++W+  
Sbjct: 894  HGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEK 953

Query: 912  FDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFS 733
            FD  +   GF  N  + CVY R  G     L LYVDDIL+ G +I  +  VK +LS+ F 
Sbjct: 954  FDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFD 1013

Query: 732  MKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKK 553
            MKDLG A  +L I++   R +  + L QS Y+ K+L RF   +SK    P  P +SL K 
Sbjct: 1014 MKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRK- 1070

Query: 552  MSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNI 373
                   +R   + + Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A++ +
Sbjct: 1071 ------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 372  LKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDT 193
            ++YLK T EL L Y      LE +             + SGYVFTL  GAVSW+S KQ  
Sbjct: 1125 MRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTI 1184

Query: 192  VADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVP---LYCDNNAAIALTKEPR 22
            +  STMEAE  A + A  EA W+R  L +L   P ++ PVP   + CDN   I      +
Sbjct: 1185 LTRSTMEAELTALDTATVEAEWLRDLLMDL---PVVEKPVPAILMNCDNQTVIVKVNNSK 1241

Query: 21   SHQK-SRH 1
             + K SRH
Sbjct: 1242 DNMKSSRH 1249


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  658 bits (1698), Expect = 0.0
 Identities = 398/1028 (38%), Positives = 562/1028 (54%), Gaps = 25/1028 (2%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLA----------SLNKDKQVVASSSGVFVTQNCFSINP-TSWV 2863
            CF C + GH  R CP+             S N         SG       FS+N  T+W 
Sbjct: 242  CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 2862 LDTGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSC 2683
            +DTG+  H+C  +  L  + ++  G  T+ +GNG+  +   VG   L   +GKI+ L + 
Sbjct: 302  VDTGANVHVCADIS-LFSSYQVARGS-TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 359

Query: 2682 YFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTH 2503
              VP++  N++S S L ++G+    E+N + +  +   I  G  C  ++  + +   N  
Sbjct: 360  QHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKS 419

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
              N    SV ++A +WH RL HIN   +  L     +  F       C SC++ K  + P
Sbjct: 420  -VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKP 478

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
                  R    L L+HSD+C     + +GG  YF+T  DD +RF YV+L+K K EA + F
Sbjct: 479  HKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYF 538

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
              YK EVENQ  +K+K LRSDRGGE+ S+EF  F +E+GI+ + TPP++P+ NG++ER+N
Sbjct: 539  KIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN 598

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL D+V +M+  A LP ++WG AL T+ H+LNRVP +   K PYEIW G KP L+Y++ 
Sbjct: 599  RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRT 658

Query: 1782 WGCPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDEQ-------KIIVSRHAT 1630
            WGC A V     K  KL  ++V C F+GY  +S  Y F  +  +        I+ SR AT
Sbjct: 659  WGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAT 718

Query: 1629 FLEKEFLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            F E  F  K+      +  EI    I                   +   PRRS   KRQ 
Sbjct: 719  FFESFFPMKDTHSGSNQPSEIIPSSITPPE--QTEHTHELVSEEDVSEAPRRS---KRQR 773

Query: 1449 DFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVI 1270
                 G      + DD P S  +A  S D+  W +A++SEMDS+  N  W +   P G  
Sbjct: 774  TAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCK 833

Query: 1269 PIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAH 1093
            P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LL++AA 
Sbjct: 834  PVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAAS 893

Query: 1092 YNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNIC 913
            +   + QMDVKTAFLNG+L+E IYM QP+GFV+ G  GK CKLLK++YGLKQA ++W+  
Sbjct: 894  HGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEK 953

Query: 912  FDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFS 733
            FD  +   GF  N  + CVY R  G     L LYVDDIL+ G ++  +  VK +LS+ F 
Sbjct: 954  FDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFD 1013

Query: 732  MKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKK 553
            MKDLG A  +L I++   R +  + L QS Y+ K+L RF   +SK    P  P +SL K 
Sbjct: 1014 MKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRK- 1070

Query: 552  MSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNI 373
                   +R   + + Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A++ +
Sbjct: 1071 ------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 372  LKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDT 193
            ++YLK T EL L Y      LE +             + SGYVFTL  GAVSW+S KQ  
Sbjct: 1125 MRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTI 1184

Query: 192  VADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVP---LYCDNNAAIALTKEPR 22
            +  STMEAE  A + A  EA W+R  L +L   P ++ PVP   + CDN   I      +
Sbjct: 1185 LTRSTMEAELTALDTATVEAEWLRDLLMDL---PVVEKPVPAILMNCDNQTVIVKVNSSK 1241

Query: 21   SHQK-SRH 1
             + K SRH
Sbjct: 1242 DNMKSSRH 1249


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  658 bits (1697), Expect = 0.0
 Identities = 399/1028 (38%), Positives = 562/1028 (54%), Gaps = 25/1028 (2%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLA----------SLNKDKQVVASSSGVFVTQNCFSINP-TSWV 2863
            CF C + GH  R CP+             S N         SG       FS+N  T+W 
Sbjct: 242  CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 2862 LDTGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSC 2683
            +DTG+  H+C  +  L  + ++  G  T+ +GNG+  +   VG   L   +GKI+ L + 
Sbjct: 302  VDTGANVHVCADIS-LFSSYQVARGS-TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 359

Query: 2682 YFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTH 2503
              VP++  N++S S L ++G+    E+N + +  +   I  G  C  ++  + +   N  
Sbjct: 360  QHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKS 419

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
              N    SV ++A +WH RL HIN   +  L     +  F       C SC++ K  + P
Sbjct: 420  -VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKP 478

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
                  R    L L+HSD+C     + +GG  YF+T  DD +RF YV+L+K K EA + F
Sbjct: 479  HKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYF 538

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
              YK EVENQ  +K+K LRSDRGGE+ S+EF  F +E+GI+ + TPP++P+ NG++ER+N
Sbjct: 539  KIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN 598

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL D+V +M+  A LP ++WG AL T+ H+LNRVP +   K PYEIW G KP L+Y++ 
Sbjct: 599  RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRT 658

Query: 1782 WGCPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDEQ-------KIIVSRHAT 1630
            WGC A V     K  KL  ++V C F+GY  +S  Y F  +  +        I+ SR AT
Sbjct: 659  WGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAT 718

Query: 1629 FLEKEFLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            F E  F  K+      +  EI    I                   +   PRRS   KRQ 
Sbjct: 719  FFESFFPMKDTHSGSNQPSEIIPSSITPPE--QTEHTHELVSEEDVSEAPRRS---KRQR 773

Query: 1449 DFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVI 1270
                 G      + DD P S  +A  S D+  W +A++SEMDS+  N  W +   P G  
Sbjct: 774  TAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCK 833

Query: 1269 PIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAH 1093
            P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LL++AA 
Sbjct: 834  PVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAAS 893

Query: 1092 YNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNIC 913
            +   + QMDVKTAFLNG+L+E IYM QP+GFV+ G  GK CKLLK++YGLKQA ++W+  
Sbjct: 894  HGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEK 953

Query: 912  FDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFS 733
            FD  +   GF  N  + CVY R  G     L LYVDDIL+ G +I  +  VK +LS+ F 
Sbjct: 954  FDKTLTFAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFD 1013

Query: 732  MKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKK 553
            MKDLG A  +L I++   R +  + L QS Y+ K+L RF   +SK    P  P +SL K 
Sbjct: 1014 MKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRK- 1070

Query: 552  MSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNI 373
                   +R   + + Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A++ +
Sbjct: 1071 ------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 372  LKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDT 193
            ++YLK T EL L Y      LE +             + SGYVFTL  GAVSW+S KQ  
Sbjct: 1125 MRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTI 1184

Query: 192  VADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVP---LYCDNNAAIALTKEPR 22
            +  STMEAE  A + A  EA W+R  L +L   P ++ PVP   + CDN   I      +
Sbjct: 1185 LTRSTMEAELTALDTATVEAEWLRDLLMDL---PVVEKPVPAILMNCDNQTVIVKVNNSK 1241

Query: 21   SHQK-SRH 1
             + K SRH
Sbjct: 1242 DNMKSSRH 1249


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  657 bits (1696), Expect = 0.0
 Identities = 395/1025 (38%), Positives = 560/1025 (54%), Gaps = 22/1025 (2%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLA----------SLNKDKQVVASSSGVFVTQNCFSINP-TSWV 2863
            CF C + GH  R C +             S N         SG       FS+N  T+W 
Sbjct: 242  CFVCGQVGHLARKCSQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 2862 LDTGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSC 2683
            +DTG+  H+C  +  L  + ++  G  T+ +GNG+  +   VG   L   +GKI+ L + 
Sbjct: 302  VDTGANVHVCADIS-LFSSYQVARGS-TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 359

Query: 2682 YFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTH 2503
              VP++  N++S S L ++G+    E+N + +  +   I  G  C  ++  + +   N  
Sbjct: 360  QHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKS 419

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
              N    SV ++A +WH RL HIN   +  L     +  F       C SC++ K  + P
Sbjct: 420  -VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKP 478

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
                  R    L L+HSD+C     + +GG  YF+TF DD +RF YV+L+K K EA + F
Sbjct: 479  HKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYF 538

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
              YK EVENQ  +K+K LRSDRGGE+ S+EF  F +E+GI+ + TPP++P+ NG+++R+N
Sbjct: 539  KIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAKRKN 598

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL D+V +M+  A LP ++WG AL T+ H+LNRVP +   K PYEIW G KP L+Y++ 
Sbjct: 599  RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRT 658

Query: 1782 WGCPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDEQ-------KIIVSRHAT 1630
            WGC A V     K  KL  ++V C F+GY  +S  Y F  +  +        I+ SR AT
Sbjct: 659  WGCLAKVNVPITKKHKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAT 718

Query: 1629 FLEKEFLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            F E  F  K+      +  EI    I                   +   PRRS   KRQ 
Sbjct: 719  FFESFFPMKDTHSGSNQPSEIIPSSITPPE--QTEHTHELVSEEDVSEAPRRS---KRQR 773

Query: 1449 DFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVI 1270
                 G      + DD P S  +A  S D+  W +A++SEMDS+  N  W +   P G  
Sbjct: 774  TAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCK 833

Query: 1269 PIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAH 1093
            P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LL++AA 
Sbjct: 834  PVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAAS 893

Query: 1092 YNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNIC 913
            +   + QMDVKTAFLNG+L+E IYM QP+GFVV G  GK CKLLK++YGLKQA ++W+  
Sbjct: 894  HGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEK 953

Query: 912  FDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFS 733
            FD  +   GF  N  + CVY R  G     L LYVDDIL+ G ++  +  VK +LS+ F 
Sbjct: 954  FDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFD 1013

Query: 732  MKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKK 553
            MKDLG A  +L I++   R +  + L QS Y+ K+L RF   +SK    P  P + L K 
Sbjct: 1014 MKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRK- 1070

Query: 552  MSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNI 373
                   +R   + + Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A++ +
Sbjct: 1071 ------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 372  LKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDT 193
            ++YLK T EL L Y +    LE +             + SGYVFTL  GAVSW+S KQ  
Sbjct: 1125 MRYLKGTVELGLHYTRYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTI 1184

Query: 192  VADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVPLYCDNNAAIALTKEPRSHQ 13
            +  STMEAE  A + A  EA W+R  L +L VV  +   + + CDN   I      + + 
Sbjct: 1185 LTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKLVPAILMNCDNQTVIVKVNSSKDNM 1244

Query: 12   K-SRH 1
            K SRH
Sbjct: 1245 KSSRH 1249


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  657 bits (1694), Expect = 0.0
 Identities = 397/1028 (38%), Positives = 561/1028 (54%), Gaps = 25/1028 (2%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLA----------SLNKDKQVVASSSGVFVTQNCFSINP-TSWV 2863
            CF C + GH  R CP+             S N         SG       FS+N  T+W 
Sbjct: 331  CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 390

Query: 2862 LDTGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSC 2683
            +DTG+  H+C  +  L  + ++  G  T+ +GNG+  +   VG   L   +GKI+ L + 
Sbjct: 391  VDTGANVHVCADIS-LFSSYQVARGS-TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 448

Query: 2682 YFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTH 2503
              VP++  N++S S L ++G+    E+N + +  +   I  G  C  ++  + +   N  
Sbjct: 449  QHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKS 508

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
              N    SV ++A +WH RL HIN   +  L     +  F       C SC++ K  + P
Sbjct: 509  -VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKP 567

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
                  R    L L+HSD+C     + +GG  YF+T  DD +RF YV+L+K K EA + F
Sbjct: 568  HKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYF 627

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
              YK EVENQ  +K+K LRSDRGGE+ S+EF  F +E+GI+ + TPP++P+ NG++ER+N
Sbjct: 628  KIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN 687

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL D+V +M+  A LP ++WG AL T+ H+LNR+P +   K PYEIW G KP L+Y++ 
Sbjct: 688  RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRIPNRNKDKTPYEIWIGRKPSLSYLRT 747

Query: 1782 WGCPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDEQ-------KIIVSRHAT 1630
            WGC A V     K  KL  ++V C F+GY  +S  Y F  +  +        I+ SR AT
Sbjct: 748  WGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAT 807

Query: 1629 FLEKEFLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            F E  F  K+      +  EI    I                   +   PRRS   KRQ 
Sbjct: 808  FFESFFPMKDTHSGSNQPSEIIPSSITPPE--QTEHTHELVSEEDVSEAPRRS---KRQR 862

Query: 1449 DFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVI 1270
                 G      + DD P S  +A  S D+  W +A++SEMDS+  N  W +   P G  
Sbjct: 863  TAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCK 922

Query: 1269 PIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAH 1093
            P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LL++AA 
Sbjct: 923  PVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAAS 982

Query: 1092 YNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNIC 913
            +   + QMDVKTAFLNG+L+E IYM QP+GFVV G  GK CKLLK++YGLKQA ++W+  
Sbjct: 983  HGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEK 1042

Query: 912  FDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFS 733
            FD  +   GF  N  + CVY R  G     L LYVDDIL+ G ++  +  VK +LS+ F 
Sbjct: 1043 FDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFD 1102

Query: 732  MKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKK 553
            MKDLG A  +L I++   R +  + L QS Y+ K+L RF   +SK    P  P + L K 
Sbjct: 1103 MKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRK- 1159

Query: 552  MSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNI 373
                   +R   + + Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A++ +
Sbjct: 1160 ------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1213

Query: 372  LKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDT 193
            ++YLK T EL L Y      LE +             + SGYVFTL  GAVSW+S KQ  
Sbjct: 1214 MRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTI 1273

Query: 192  VADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVP---LYCDNNAAIALTKEPR 22
            +  STMEAE  A + A  EA W+R  L +L   P ++ PVP   + CDN   I      +
Sbjct: 1274 LTRSTMEAELTALDTATVEAEWLRDLLMDL---PVVEKPVPAILMNCDNQTVIVKVNSSK 1330

Query: 21   SHQK-SRH 1
             + K SRH
Sbjct: 1331 DNMKSSRH 1338


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  655 bits (1689), Expect = 0.0
 Identities = 396/1018 (38%), Positives = 557/1018 (54%), Gaps = 24/1018 (2%)
 Frame = -1

Query: 3009 CFYCHKSGHWKRNCPEYLA----------SLNKDKQVVASSSGVFVTQNCFSINP-TSWV 2863
            CF C + GH  R CP+             S N         SG       FS+N  T+W 
Sbjct: 242  CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWW 301

Query: 2862 LDTGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSC 2683
            +DTG+  H+C  +  L  + ++  G  T+ +GNG+  +   VG   L   +GKI+ L + 
Sbjct: 302  VDTGANVHVCADIS-LFSSYQVARGS-TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNV 359

Query: 2682 YFVPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTH 2503
              VP++  N++S S L ++G+    E+N + +  +   I  G  C  ++  + +   N  
Sbjct: 360  QHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKS 419

Query: 2502 HTNKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTP 2323
              N    SV ++A +WH RL HIN   +  L     +  F       C SC++ K  + P
Sbjct: 420  -VNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKP 478

Query: 2322 FTGTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKF 2143
                  R    L L+HSD+C     + +GG  YF+T  DD +RF YV+L+K K EA + F
Sbjct: 479  HKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYF 538

Query: 2142 IEYKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRN 1963
              YK EVENQ  +K+K LRSDRGGE+ S+EF  F +E+GI+ + TPP++P+ NG++ER+N
Sbjct: 539  KIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN 598

Query: 1962 RTLLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKI 1783
            RTL D+V +M+  A LP ++WG AL T+ H+LNRVP +   K PYEIW G KP L+Y++ 
Sbjct: 599  RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRT 658

Query: 1782 WGCPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDEQ-------KIIVSRHAT 1630
            WGC A V     K  KL  ++V C F+GY  +S  Y F  +  +        I+ SR AT
Sbjct: 659  WGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAT 718

Query: 1629 FLEKEFLEKEISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPKRQY 1450
            F E  F  K+      +  EI    I                   +   PRRS   KRQ 
Sbjct: 719  FFESFFPMKDTHSGSNQPSEIIPSSITPPE--QTEHTHELVSEEDVSEAPRRS---KRQR 773

Query: 1449 DFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPKGVI 1270
                 G      + DD P S  +A  S D+  W +A++SEMDS+  N  W +   P G  
Sbjct: 774  TAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCK 833

Query: 1269 PIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAIAAH 1093
            P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LL++AA 
Sbjct: 834  PVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAAS 893

Query: 1092 YNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRWNIC 913
            +   + QMDVKTAFLNG+L+E IYM QP+GFV+ G  GK CKLLK++YGLKQA ++W+  
Sbjct: 894  HGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLKQAPKQWHEK 953

Query: 912  FDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSKRFS 733
            FD  +   GF  N  + CVY R  G     L LYVDDIL+ G +I  +  VK +LS+ F 
Sbjct: 954  FDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFD 1013

Query: 732  MKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISLSKK 553
            MKDLG A  +L I++   R +  + L QS Y+ K+L RF   +SK    P  P +SL K 
Sbjct: 1014 MKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLSLRK- 1070

Query: 552  MSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAVKNI 373
                   +R   + + Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A++ +
Sbjct: 1071 ------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERV 1124

Query: 372  LKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSKQDT 193
            ++YLK T EL L Y      LE +             + SGYVFTL  GAVSW+S KQ  
Sbjct: 1125 MRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTI 1184

Query: 192  VADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVP---LYCDNNAAIALTKE 28
            +  STMEAE  A + A  EA W+R  L +L   P ++ PVP   + CDN      T E
Sbjct: 1185 LTRSTMEAELTALDTATVEAEWLRDLLMDL---PVVEKPVPAILMNCDNQTTCEKTIE 1239


>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1448

 Score =  654 bits (1687), Expect = 0.0
 Identities = 391/1028 (38%), Positives = 563/1028 (54%), Gaps = 26/1028 (2%)
 Frame = -1

Query: 3012 ECFYCHKSGHWKRNCPEYLASLNKDKQVVASSSGVFVTQNCFSINPT--------SWVLD 2857
            +CF C KSGHW ++CPE      K   +V S  G   T     I PT         W +D
Sbjct: 393  DCFVCGKSGHWAKDCPE--RKDRKSANMVISEGGG--TSGYGKILPTVLSVFHSPDWWVD 448

Query: 2856 TGSGSHICNLLQGLRRNRKLGAGEMTLQVGNGAKVAALAVGDFHLALPNGKILILNSCYF 2677
            TG+  H+C  +  L  + ++G G  +L +GNG+  A   VG   L   +GK + L +   
Sbjct: 449  TGANIHVCADIS-LFSSYQVGRGS-SLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQH 506

Query: 2676 VPTMMCNIISISLLDKEGYMFKLENNVMNIVFNQKLIAYGTLCNDIYILNQNTILNTHHT 2497
            VP++  N++S SLL +EG+    E+N   +      +  G     ++  + N + N H+ 
Sbjct: 507  VPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNA 566

Query: 2496 NKRKLSVMNDAFLWHCRLGHINKERLGELHKHGYLDPFDFESYDTCKSCLKGKMTKTPFT 2317
                +S  +++ +WH RL H+N   +  L     +  F       C +C++ K  + P  
Sbjct: 567  VNH-ISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHK 625

Query: 2316 GTGARVTELLGLIHSDVCGPMSTMARGGYSYFITFTDDFSRFGYVFLMKHKSEACEKFIE 2137
             + AR    L L+HSD+C     + +GG  YF+T  DD +RF YV+L+K K EA   F  
Sbjct: 626  ASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKI 685

Query: 2136 YKNEVENQTSKKVKILRSDRGGEYLSSEFLGFLKENGILSQVTPPFTPQLNGVSERRNRT 1957
            YK EVENQ  +K+K LRSDRGGEY S+EF  F +E GI+ ++TPP++PQ NGV+ER+NRT
Sbjct: 686  YKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRT 745

Query: 1956 LLDMVRSMMSNAELPFSFWGYALETAAHLLNRVPTKAVPKPPYEIWNGMKPHLNYIKIWG 1777
            L +MV +M+  A L   +WG A+ TA H+LN++P K     P+E W   K +L+Y++ WG
Sbjct: 746  LTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWG 805

Query: 1776 CPAYVKKQDPK--KLEARSVLCKFVGYPRNSQGYLFYHIDE-------QKIIVSRHATFL 1624
            C A V     K  KL  ++V C F+GY  +S GY F  ++          I+ SR ATF 
Sbjct: 806  CLAKVNVPIAKKWKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFF 865

Query: 1623 EKEFLEK-----EISGSMVELEEISEIQINTDNLXXXXXXXXXXXXXPLRRYPRRSHAPK 1459
            E EF  K         +++  E  + I+ N                   R+  R+  A  
Sbjct: 866  ENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQT---PEENPEEDNIVDTRKSKRQRVAKS 922

Query: 1458 RQYDFFVEGCMSDHVIDDDEPLSYLQASQSKDSVAWHDAMKSEMDSMYTNKVWILDNTPK 1279
               D+ V        + DD P +  +A  S D+  W +A++SEMDS+ +N  W +   P 
Sbjct: 923  FGDDYIV-------YLVDDTPRTIEEAYSSLDADYWKEAVRSEMDSIMSNGTWEVVERPY 975

Query: 1278 GVIPIGSKWLFKKKLGVDGK-ETFKARLVAKGFRQRPGLDYDETFSPVAMLKSIRILLAI 1102
            G  P+G KW+FKKKL  DG  E +KARLVAKG+ Q+ G D+ +T+SPVA L +IR+LLA+
Sbjct: 976  GCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLAL 1035

Query: 1101 AAHYNYEIWQMDVKTAFLNGDLEECIYMTQPEGFVVSGSSGKACKLLKAIYGLKQASRRW 922
            AA +   + QMDVKTAFLNG+LEE IYM QP+G+V+ G  G  CKLLK++YGLKQA ++W
Sbjct: 1036 AASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQW 1095

Query: 921  NICFDDAIKEFGFIKNPDEPCVYKRIIGSIVSFLILYVDDILLIGNDISSLQAVKIWLSK 742
            +  FD  +   GF+ N  + CVY R  G     L LYV+DIL+ G  ++ ++ VK +LSK
Sbjct: 1096 HEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVNDILIFGTSLNVIEEVKDYLSK 1155

Query: 741  RFSMKDLGEASCVLGIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFIPASPGISL 562
             F MKDLGEA  +L I++ R+  +  + L QS Y+ KVL RF   + K    P  P + L
Sbjct: 1156 SFEMKDLGEADVILNIKLQRE-DEDGITLVQSHYVDKVLSRFGYSDCKPAPTPYDPSVLL 1214

Query: 561  SKKMSPQTDEERKRMSLIPYASAVGSIMYAMLCTRPDIAYTLSLVSRYQSNHGEEHWKAV 382
             K      D+ R       Y+  +GS+MY    TRPDI++ +S +SR+ SN G++HW+A+
Sbjct: 1215 RKNQRIARDQLR-------YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQAL 1267

Query: 381  KNILKYLKRTKELFLIYGKSDLQLEAFXXXXXXXXXXXXXSVSGYVFTLNRGAVSWKSSK 202
            + +++YLK T    + Y      LE +             + SGYVFTL  GAVSWKS K
Sbjct: 1268 ERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAVSWKSCK 1327

Query: 201  QDTVADSTMEAEYIAANDAAKEAVWMRKFLSELEVVPTIKDPVP---LYCDNNAAIALTK 31
            Q  +  STMEAE  A + A  EA W+R+ L +L   P ++ PVP   + CDN   I    
Sbjct: 1328 QTILTRSTMEAELTALDTATVEAEWLRELLMDL---PVVEKPVPAILMNCDNQTMIIKVN 1384

Query: 30   EPRSHQKS 7
              + + KS
Sbjct: 1385 SSKDNMKS 1392