BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00004287
         (777 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Tritic...    60   1e-14
ref|YP_009048052.1| cytochrome b6-f complex subunit IV (chloropl...    58   7e-06

>gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Triticum urartu]
          Length = 430

 Score = 60.5 bits (145), Expect(2) = 1e-14
 Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
 Frame = +3

Query: 120 KQINRKSIFHTYPHIYNNSM*---EKIYQIPFPKL--QLFIAKNSVLTGKCSISK*AYKF 284
           K+I  + I +    +YN+SM    +   +  FPKL  QL I  N +L GKCSISK AYKF
Sbjct: 359 KEIRPRKILNRIK-VYNDSMTLGKKSFIRFSFPKLHLQLLIENNPILMGKCSISKWAYKF 417

Query: 285 DHNQVLFGLSHV 320
           DH+Q+L GLSHV
Sbjct: 418 DHDQLLCGLSHV 429



 Score = 47.0 bits (110), Expect(2) = 1e-14
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +2

Query: 35  EFLWIHPPKEPDMIIFHHPARARIKRM 115
           E   IHPPKEPDM I+HHPARAR+K +
Sbjct: 335 ELFRIHPPKEPDMRIYHHPARARVKEI 361


>ref|YP_009048052.1| cytochrome b6-f complex subunit IV (chloroplast) [Nymphaea
          mexicana] gi|573015085|gb|AHF71668.1| cytochrome b6-f
          complex subunit IV (chloroplast) [Nymphaea mexicana]
          Length = 187

 Score = 57.8 bits (138), Expect = 7e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -1

Query: 75 IMSGSFGGWIHKNSPIPITKKPDLN 1
          +MSGSFGGWIHKNSPIPITKKPDLN
Sbjct: 3  VMSGSFGGWIHKNSPIPITKKPDLN 27