BLASTX nr result
ID: Anemarrhena21_contig00004030
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00004030
(6345 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV su... 1570 0.0
ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV su... 1543 0.0
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su... 1449 0.0
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su... 1432 0.0
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 1212 0.0
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su... 1212 0.0
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV su... 1198 0.0
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 1186 0.0
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 1181 0.0
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su... 1177 0.0
ref|XP_004970757.1| PREDICTED: DNA-directed RNA polymerase IV su... 1176 0.0
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su... 1171 0.0
ref|XP_012701775.1| PREDICTED: DNA-directed RNA polymerase IV su... 1171 0.0
ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su... 1126 0.0
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 1123 0.0
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 1122 0.0
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su... 1106 0.0
ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1106 0.0
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r... 1094 0.0
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su... 1094 0.0
>ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Phoenix
dactylifera]
Length = 1567
Score = 1570 bits (4064), Expect = 0.0
Identities = 805/1392 (57%), Positives = 1014/1392 (72%), Gaps = 35/1392 (2%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
MA+D I E M PSG L G++FD+L DDIEK VNI +++D+ + +LGLPNASS+C TC
Sbjct: 1 MASDQIIELMAPSGLLTGIEFDILTDDDIEKICHVNIVESNDVTNAKLGLPNASSRCQTC 60
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRK----DLRIKK 3776
G+ N +DCEGH G+IKLP TIYHP+ V EV+ ILNQICP C IK + + DL +
Sbjct: 61 GSKNTRDCEGHVGLIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQMKDSFDLETWE 120
Query: 3775 K--------------IFTLKRLLLRM-KFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWE 3641
K I L+R L++ K + L PQ S+L ++K+ GKKW
Sbjct: 121 KSIGEDHISEAFGKTIAALRRKFLKLCKSKVLFSPQ--SVLDHARKFYLKKSLEVGKKWA 178
Query: 3640 RVEHQPGCKYCSRNSGEWYPAIKFKISSKDTRGRKC-TITAEVNEKVPKKFGNRSLSEVL 3464
+ + Q CKYC+RN+ +WYPA+KFK+ SKD G+K ++ AEVN+K+PKKF N+SL +VL
Sbjct: 179 KTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSLGDVL 238
Query: 3463 PSDFWNFIPMVPSQHGKPESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCI 3284
P DFW+F+P Q + + ++I +SP QAF +L+ELDPEFIK F RR+++FLS +
Sbjct: 239 PQDFWSFVPTFSQQ----QESNANRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSYL 294
Query: 3283 PLSPNCQRVVETSHVFSDGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVAT 3104
P+SPNC RVVETSHV +DGP+LSFD+ AYK LVD SRKIDEF QHQQF A + +
Sbjct: 295 PVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATSFITS 354
Query: 3103 RVHDCLNVSKLHSNKSVEDRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDP 2924
RV DCLNVSKL + S S D+ ++GLKW+KEVVLSKR+DN FRM M+GDP
Sbjct: 355 RVLDCLNVSKLRARNS---------SNGDSSCLSGLKWLKEVVLSKRSDNVFRMTMVGDP 405
Query: 2923 KIQMGEIGLPQDVSETLEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSN 2744
KI++G+IG+P D+S+ + I+E VN +N++KL ++C+ HLL+K ELH+R KG+L + +SN
Sbjct: 406 KIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRKSN 465
Query: 2743 QLQVGDTFYRPLENGDFILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFD 2564
QLQVGDT YRPLEN D ILVNRPPSVHQHSL+ALSVKILP++SV+SINPLCCAPLLGDFD
Sbjct: 466 QLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGDFD 525
Query: 2563 GDCLHGYVPQSLRARVELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNK 2384
GDCLHGYVPQS+ RVEL EL+S DHQL NAQDGRSL+SL+HDSLTAAHLL VFLNK
Sbjct: 526 GDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFLNK 585
Query: 2383 FEMQQLEMLCTCESQYPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNT 2204
FEMQQ EMLC +S P+II A P WTGQQLFSML P +D S GS + I +G
Sbjct: 586 FEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKGEV 645
Query: 2203 VHSHGVSFLSQNSISGILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTS 2024
+ + G SF QN+ S I MFKCYGRKAL++LFSAQ+VLCE+LT RGLSVSLGDVYL+S
Sbjct: 646 LSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYLSS 705
Query: 2023 DPYTRKKLIDEVRCGLEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARAT 1844
D Y+R+K+ DEV GLEEA+ +CH +LML+P+M FLLK+ D T N +AR
Sbjct: 706 DLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNPYNYARNQ 760
Query: 1843 RPINLASIAKFKEFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSA 1664
+ I+ SIA F++ F +LQNVIH YISR+NS+L M+ AGSKGSL KLVQQG CLG QL A
Sbjct: 761 KHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQLPA 820
Query: 1663 KVLPFSIPDKLSC-------------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHA 1523
LPF IP +LSC P+D + G+NSYAV++ASFLDGLNPLECF HA
Sbjct: 821 SPLPFRIPRRLSCVSLNAQKKLEYGIPQDVVECVRGQNSYAVVKASFLDGLNPLECFVHA 880
Query: 1522 LSCRSNMFSDNAELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKD 1343
++ RSNMFS+NAELPG LTRK+MFY+RD+Y AYDGT+R+ YGQQL+QFSY P + S +
Sbjct: 881 ITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESSSEQ 940
Query: 1342 FEHSQFSSEEDSECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECA 1163
+ + E+D+E N+LGGQPVGS A+C+ISEAAYGALDHP+NSLE+SPLLNLKKVLEC
Sbjct: 941 GDSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASPLLNLKKVLECG 1000
Query: 1162 PARTSVDRTAXXXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEET 983
+R SVD++A YGFEY AL VKNHLDRV FSD+VT+V+IFYA D +
Sbjct: 1001 KSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDVQ-- 1058
Query: 982 KGIKLSPWISHFHLNKEWMIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSKNC-I 809
G K SPWI+HFH++KE M+RKR+ + +++D L+ YN RE LP L TSK+C +
Sbjct: 1059 -GTKFSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSKDCSL 1117
Query: 808 LDNGHKKLKEYCVEVAVEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQ 629
+D ++ + +C+ V V+ +S LD IRD ++P+LL +KGF +FK+V+IL D Q
Sbjct: 1118 IDIQNEHDETFCIMVLVDTPESEIQLDTIRDVLVPLLLETLVKGFWEFKKVEILCDIQPD 1177
Query: 628 PDGQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSY 449
+LFL++SM++ C PGKFW L+NACIPIMDLIDWE SHP+ +YDI +GI +A+ Y
Sbjct: 1178 SLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDIFSIYGIDAAWKY 1237
Query: 448 FLGSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACF 269
FL LK A SD GR IH EHLL+ +D LSVTGEFHGLS KGLK+QR SISSPFT AC
Sbjct: 1238 FLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQASISSPFTLACL 1297
Query: 268 SNPEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGT 89
SNP FI AAK GSVD L GT+DA+AWG+EAPVGTGGPF+IIYSGKVHN ++TENIY T
Sbjct: 1298 SNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKVHNPQKTENIYKT 1357
Query: 88 LLSLKHDRSNQN 53
LL+ K ++ Q+
Sbjct: 1358 LLNFKVEKPWQD 1369
>ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
guineensis]
Length = 1569
Score = 1543 bits (3995), Expect = 0.0
Identities = 788/1395 (56%), Positives = 1005/1395 (72%), Gaps = 38/1395 (2%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
MA+D I E M PSG L G+ FD+L DDIEK V+I +++D+ + +LGLPNASS+C TC
Sbjct: 1 MASDQIIELMAPSGLLTGITFDILTDDDIEKICHVSIVESNDVTNAKLGLPNASSRCQTC 60
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIK----- 3779
G+ N +DCEGH G IKLP TIYHP+ V EV+ ILNQICP C IK DL+IK
Sbjct: 61 GSRNTRDCEGHVGFIKLPRTIYHPYFVTEVIQILNQICPGCMSIKG----DLQIKDSFDL 116
Query: 3778 -----------------KKIFTLKRLLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGK 3650
K I +KR +L++ K+ +S++ V V++K K
Sbjct: 117 ETWEKFIGEDHVSEAFGKTIAAVKRKVLKLCKSKVSFSP-QSVIQHVKKVYLKNCLEVRK 175
Query: 3649 KWERVEHQPGCKYCSRNSGEWYPAIKFKISSKDTRGRKC-TITAEVNEKVPKKFGNRSLS 3473
KW + + Q CKYC+RN+ WYPA+KFK+ SKD G+K +I AEVNEK+PKKF N+SL
Sbjct: 176 KWAKTDAQATCKYCARNATNWYPAVKFKLFSKDMLGKKSLSIIAEVNEKLPKKFQNKSLC 235
Query: 3472 EVLPSDFWNFIPMVPSQHGKPESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFL 3293
+VLP DFW+F+P Q + + ++I +SP QAF +L+ELDPEFIK F RR+++FL
Sbjct: 236 DVLPQDFWSFVPSFSQQ----QESNANRITVSPYQAFCLLKELDPEFIKQFALRRDVLFL 291
Query: 3292 SCIPLSPNCQRVVETSHVFSDGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALD 3113
S +P++PNC RVVETS+V +DGP+LSFD+ AYK LVD SRKI+EF QHQQF A
Sbjct: 292 SYLPVAPNCHRVVETSYVHADGPQLSFDERTKAYKRLVDISRKIEEFRQHQQFVPLATSF 351
Query: 3112 VATRVHDCLNVSKLHSNKSVEDRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMI 2933
+ RV DCLNVSKL + S S D+ ++GLKW+K+VVLSKR+DN FRM MI
Sbjct: 352 ITNRVLDCLNVSKLRTRNS---------SNGDSSCLSGLKWLKDVVLSKRSDNAFRMTMI 402
Query: 2932 GDPKIQMGEIGLPQDVSETLEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLH 2753
GDPKI++G+IG+P D+S+ L ++E VN +N++KL ++C+ HLL+ ELH R KG+L +
Sbjct: 403 GDPKIKLGQIGIPFDLSQNLCVSEHVNAYNLEKLNMSCNLHLLTNEELHTRSKGRLTSVR 462
Query: 2752 RSNQLQVGDTFYRPLENGDFILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLG 2573
+SNQLQ+GDT YRPLENGD ILVNRPPSVHQHSL+ALS KILP++SV+SINPLCCAPLLG
Sbjct: 463 KSNQLQIGDTIYRPLENGDLILVNRPPSVHQHSLIALSAKILPIQSVVSINPLCCAPLLG 522
Query: 2572 DFDGDCLHGYVPQSLRARVELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVF 2393
DFDGDCLHGYVPQS+ RVEL EL+S DHQL NAQDGRSL+SL+HDSLTAAHLL VF
Sbjct: 523 DFDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTSNIVF 582
Query: 2392 LNKFEMQQLEMLCTCESQYPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGE 2213
LNKFEMQQLEMLC +P+II A P WTGQQLFSM+ P +D S G ++I +
Sbjct: 583 LNKFEMQQLEMLCFSRLPFPSIIKAPTTRFPLWTGQQLFSMVLPPAMDFSMGPNKIQISK 642
Query: 2212 GNTVHSHGVSFLSQNSISGILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVY 2033
G + + GVS QN+ S I MFKCYGRKAL++LFSAQ+VLCE+LT RGLSVSLGDVY
Sbjct: 643 GEVLSTSGVSSWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVY 702
Query: 2032 LTSDPYTRKKLIDEVRCGLEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFA 1853
L+SD Y+R+K+ DEV GLEEA+ +CH ++ML+P+M FL K+ D T +L++ +A
Sbjct: 703 LSSDLYSRRKMTDEVFYGLEEAEDACHIKQIMLDPEMEFLFKSHDGTYRNLYN-----YA 757
Query: 1852 RATRPINLASIAKFKEFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQ 1673
R + I+ S+A F++ F +LQNVIH YISR+NS+L M+ AGSKGSL KLVQQG CLG Q
Sbjct: 758 RNRKHISQFSVAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQ 817
Query: 1672 LSAKVLPFSIPDKLSC-------------PEDGFDSSGGENSYAVIEASFLDGLNPLECF 1532
L + LPF IP +LSC P+D + +GG+NSYAV++ASFLDGLNPLECF
Sbjct: 818 LPSSPLPFRIPRRLSCVSWNAQKKSEHGIPQDVVECAGGQNSYAVVKASFLDGLNPLECF 877
Query: 1531 FHALSCRSNMFSDNAELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDES 1352
HA++ RSNMFS+NAELPG LTRK+MFY+RD+Y AYDGT+R+ YGQQL+QFSY P S
Sbjct: 878 VHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGKSS 937
Query: 1351 DKDFEHSQFSSEEDSECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 1172
++ + E D+E N LGGQPVGS AAC+ISEAAYGALDHP+NSLE+SPL+NLKKVL
Sbjct: 938 GEEGDSCMTYGENDAENNSLGGQPVGSWAACAISEAAYGALDHPMNSLEASPLMNLKKVL 997
Query: 1171 ECAPARTSVDRTAXXXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDA 992
+C + S+D++A YGFEY AL VKNHLDRV FSD+VT+++IFYA D
Sbjct: 998 DCGKTKASMDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTILIFYAGLDV 1057
Query: 991 EETKGIKLSPWISHFHLNKEWMIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSKN 815
+ G K SPWI+HFH++KE M+RKR+ +++D L+ YN RE LP L +SK+
Sbjct: 1058 Q---GTKFSPWITHFHVSKERMMRKRLRAQTIIDQLSGNYNFVRETVGTELPVLHISSKD 1114
Query: 814 C-ILDNGHKKLKEYCVEVAVEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDS 638
C ++D ++ + +CV V V+ S LD IRD +IP+LL +KGF +FK+V+IL D
Sbjct: 1115 CSLIDIQNEHDETFCVTVLVDAPKSDIQLDTIRDVIIPLLLETLIKGFWEFKKVEILCDI 1174
Query: 637 QSQPDGQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSA 458
Q LFL+++M++ C PGKFW L+NACIPIMDLIDWE+SHP+ +YDI +GI +A
Sbjct: 1175 QRDSLDGLFLRVTMSEKCLPGKFWSALQNACIPIMDLIDWEQSHPNSMYDIFSIYGIDAA 1234
Query: 457 YSYFLGSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQ 278
+ YFL LK A SDIGR +H EHLL+ +D LSVTGEFHGLS KGLK+QR SISSPFT
Sbjct: 1235 WKYFLKYLKSATSDIGRCMHEEHLLMAADCLSVTGEFHGLSTKGLKKQRDQASISSPFTL 1294
Query: 277 ACFSNPEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENI 98
AC SNP FI AAK GSVD L GT+DA+AWG+EAP+GTGGPF+IIYSGKVHN ++ ENI
Sbjct: 1295 ACLSNPGNGFINAAKQGSVDHLCGTLDAMAWGKEAPIGTGGPFEIIYSGKVHNSQKNENI 1354
Query: 97 YGTLLSLKHDRSNQN 53
Y TL++ K ++ Q+
Sbjct: 1355 YKTLMNFKVEKPWQD 1369
>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
acuminata subsp. malaccensis]
gi|695047161|ref|XP_009411450.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Musa acuminata
subsp. malaccensis] gi|695047163|ref|XP_009411451.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Musa acuminata subsp. malaccensis]
Length = 1569
Score = 1449 bits (3750), Expect = 0.0
Identities = 762/1392 (54%), Positives = 978/1392 (70%), Gaps = 45/1392 (3%)
Frame = -3
Query: 4114 DIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGAT 3935
D+I EQ +PSG+L G+ FDL+ DIEK VNI +A+++ S +LGLPNASSQC TCG+
Sbjct: 4 DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63
Query: 3934 NRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIK-------- 3779
N +DC+GH G +KLP TIYHP V EVVHILNQICP CK +KK DL++K
Sbjct: 64 NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKK----DLKMKGSVILEAS 119
Query: 3778 ---------------KKIFTLKRLLLRMKFEKLKLPQNRSLLSRVTNV---HIKQLKFSG 3653
K + L+R LL++ KL LP RS+L+R T V ++K++ +
Sbjct: 120 EKAIGEGIYILEAFGKNLTVLQRRLLKLCRSKLLLP-TRSILARNTKVRFINLKKILKTR 178
Query: 3652 KKWERVEHQPGCKYCSRNSGEWYPAIKFKISSKDTRGRKC-TITAEVNEKVPKKFGNRSL 3476
K W + Q CKYC+R + WYP +KFKISSKD GR+ +I AEVNEK+PKKF ++SL
Sbjct: 179 KNWVSKDSQVCCKYCARKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSL 238
Query: 3475 SEVLPSDFWNFIPMVPSQHG-KPESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELI 3299
EVLP D+WNFIP V G KP SKI+L+P Q F +L ELDPEFI+ FV RREL+
Sbjct: 239 GEVLPEDYWNFIPKVSLLQGAKP-----SKIDLTPHQVFCLLSELDPEFIQQFVSRRELL 293
Query: 3298 FLSCIPLSPNCQRVVETSHVFSDGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAA 3119
FLS +P++PNCQRVVETSHVF+DGP+LSFD+ AYK L D S+KI EF HQQFG A
Sbjct: 294 FLSYLPITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLAT 353
Query: 3118 LDVATRVHDCLNVSKLHSNKSVEDRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMI 2939
+RV DC N SKLH++ S S+ D+ S G++W+K+VVLSKRTDN FRM
Sbjct: 354 SYTMSRVLDCFNASKLHASSS---------SRGDSTS--GIRWLKDVVLSKRTDNVFRMT 402
Query: 2938 MIGDPKIQMGEIGLPQDVSETLEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLIL 2759
M+GDPKI++ EIG+P D+SE+L +AEQVN +N++KL ++C+ HLL K L+ R KG+L
Sbjct: 403 MVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTS 462
Query: 2758 LHRSNQLQVGDTFYRPLENGDFILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPL 2579
LH++NQLQVGD RPLENGD ILVNRPPSVHQHSL+ALSV ILP++SVISINPLCCAPL
Sbjct: 463 LHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPL 522
Query: 2578 LGDFDGDCLHGYVPQSLRARVELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGA 2399
LGDFDGDCLHGYVPQS+ RVEL ELLS DHQLFNAQDGRSL+SLTHDSLTAA+LL
Sbjct: 523 LGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANR 582
Query: 2398 VFLNKFEMQQLEMLCTCESQYPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKI 2219
FLNK +MQQL MLC PA++ P WTG+QLFSML P +D S + I
Sbjct: 583 EFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-I 641
Query: 2218 GEGNTVHSHGVSFLSQNSISGILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGD 2039
+G + S G SF QN+ +G+ MFK YGRKAL+YL +Q++LCE+LT+RGLSVSLGD
Sbjct: 642 SKGEVMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGD 701
Query: 2038 VYLTSDPYTRKKLIDEVRCGLEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPK 1859
VYL+SD Y+R K++DE+ GLEEA+ +C +LMLEP+M +L+ ++ +D+L ++ K
Sbjct: 702 VYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQYK 760
Query: 1858 FARATRPINLASIAKFKEFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLG 1679
A ++ SIA FK + +L + I+ +I+++NS+L M+ AGSKGSL+KL+QQG CLG
Sbjct: 761 IASERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLG 820
Query: 1678 FQLSAKVLPFSIPDKLSC------------PEDGFDSSGGENSYAVIEASFLDGLNPLEC 1535
QL A LPF++P KL+C D SS G++SYAVI SFLDGLNPLEC
Sbjct: 821 LQLFAHPLPFTVPSKLNCCMWNNLKALDGGISDAAKSSCGQSSYAVIGTSFLDGLNPLEC 880
Query: 1534 FFHALSCRSNMFSDNAELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDE 1355
F HA+ R+N+F++NAELPGTLTRK+MFY+RD+Y AYDGT+R+AYGQQ+++FSY S ++
Sbjct: 881 FVHAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSY-SILED 939
Query: 1354 SDKDFEHSQFSSEEDSECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKV 1175
S + E +D+E LGG+PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK V
Sbjct: 940 STEGGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMV 999
Query: 1174 LECAPARTSVDRTAXXXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHD 995
L+C + S + TA YG EY AL VKNHL+RV F +++ +VMI Y HD
Sbjct: 1000 LDCCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHD 1059
Query: 994 AEETKGIKLSPWISHFHLNKEWMIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSK 818
+ G SPWI HFH++K+ M+R+R+N+ V + L + YN RE+ + +LPRL F SK
Sbjct: 1060 VQ---GTNFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSK 1116
Query: 817 NCILDNGHKKLKE----YCVEVAVEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDI 650
NC + K KE +C+ VA E +S LD IRD VIP+LL +KGF ++V+I
Sbjct: 1117 NC---SSAYKWKEHDDSFCMSVAAETSESLIQLDTIRDMVIPLLLETPIKGFWASEKVEI 1173
Query: 649 LWDSQSQPDGQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFG 470
L +S +LFL+++M+K C PG FW L++ACIPIMDLIDW+ SHPD VY+IS +G
Sbjct: 1174 LCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGTYG 1233
Query: 469 ITSAYSYFLGSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISS 290
I +A+ YF+ SLK +DIGR+IH HL + +D LSVTGEFHGLS KGL+QQR +SISS
Sbjct: 1234 IDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSISS 1293
Query: 289 PFTQACFSNPEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQ 110
PF QAC SNP CF+ AAK GS+D L GT+DAVAWG+EAP GTGGPF+I+YSGKVHN +
Sbjct: 1294 PFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNLTR 1353
Query: 109 TENIYGTLLSLK 74
E IY L S+K
Sbjct: 1354 GEGIYKNLHSIK 1365
>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
acuminata subsp. malaccensis]
Length = 1562
Score = 1432 bits (3706), Expect = 0.0
Identities = 758/1392 (54%), Positives = 973/1392 (69%), Gaps = 45/1392 (3%)
Frame = -3
Query: 4114 DIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGAT 3935
D+I EQ +PSG+L G+ FDL+ DIEK VNI +A+++ S +LGLPNASSQC TCG+
Sbjct: 4 DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63
Query: 3934 NRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIK-------- 3779
N +DC+GH G +KLP TIYHP V EVVHILNQICP CK +KK DL++K
Sbjct: 64 NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKK----DLKMKGSVILEAS 119
Query: 3778 ---------------KKIFTLKRLLLRMKFEKLKLPQNRSLLSRVTNV---HIKQLKFSG 3653
K + L+R LL++ KL LP RS+L+R T V ++K++ +
Sbjct: 120 EKAIGEGIYILEAFGKNLTVLQRRLLKLCRSKLLLP-TRSILARNTKVRFINLKKILKTR 178
Query: 3652 KKWERVEHQPGCKYCSRNSGEWYPAIKFKISSKDTRGRKC-TITAEVNEKVPKKFGNRSL 3476
K W + Q R + WYP +KFKISSKD GR+ +I AEVNEK+PKKF ++SL
Sbjct: 179 KNWVSKDSQ-------RKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSL 231
Query: 3475 SEVLPSDFWNFIPMVPSQHG-KPESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELI 3299
EVLP D+WNFIP V G KP SKI+L+P Q F +L ELDPEFI+ FV RREL+
Sbjct: 232 GEVLPEDYWNFIPKVSLLQGAKP-----SKIDLTPHQVFCLLSELDPEFIQQFVSRRELL 286
Query: 3298 FLSCIPLSPNCQRVVETSHVFSDGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAA 3119
FLS +P++PNCQRVVETSHVF+DGP+LSFD+ AYK L D S+KI EF HQQFG A
Sbjct: 287 FLSYLPITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLAT 346
Query: 3118 LDVATRVHDCLNVSKLHSNKSVEDRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMI 2939
+RV DC N SKLH++ S S+ D+ S G++W+K+VVLSKRTDN FRM
Sbjct: 347 SYTMSRVLDCFNASKLHASSS---------SRGDSTS--GIRWLKDVVLSKRTDNVFRMT 395
Query: 2938 MIGDPKIQMGEIGLPQDVSETLEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLIL 2759
M+GDPKI++ EIG+P D+SE+L +AEQVN +N++KL ++C+ HLL K L+ R KG+L
Sbjct: 396 MVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTS 455
Query: 2758 LHRSNQLQVGDTFYRPLENGDFILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPL 2579
LH++NQLQVGD RPLENGD ILVNRPPSVHQHSL+ALSV ILP++SVISINPLCCAPL
Sbjct: 456 LHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPL 515
Query: 2578 LGDFDGDCLHGYVPQSLRARVELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGA 2399
LGDFDGDCLHGYVPQS+ RVEL ELLS DHQLFNAQDGRSL+SLTHDSLTAA+LL
Sbjct: 516 LGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANR 575
Query: 2398 VFLNKFEMQQLEMLCTCESQYPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKI 2219
FLNK +MQQL MLC PA++ P WTG+QLFSML P +D S + I
Sbjct: 576 EFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-I 634
Query: 2218 GEGNTVHSHGVSFLSQNSISGILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGD 2039
+G + S G SF QN+ +G+ MFK YGRKAL+YL +Q++LCE+LT+RGLSVSLGD
Sbjct: 635 SKGEVMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGD 694
Query: 2038 VYLTSDPYTRKKLIDEVRCGLEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPK 1859
VYL+SD Y+R K++DE+ GLEEA+ +C +LMLEP+M +L+ ++ +D+L ++ K
Sbjct: 695 VYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQYK 753
Query: 1858 FARATRPINLASIAKFKEFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLG 1679
A ++ SIA FK + +L + I+ +I+++NS+L M+ AGSKGSL+KL+QQG CLG
Sbjct: 754 IASERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLG 813
Query: 1678 FQLSAKVLPFSIPDKLSC------------PEDGFDSSGGENSYAVIEASFLDGLNPLEC 1535
QL A LPF++P KL+C D SS G++SYAVI SFLDGLNPLEC
Sbjct: 814 LQLFAHPLPFTVPSKLNCCMWNNLKALDGGISDAAKSSCGQSSYAVIGTSFLDGLNPLEC 873
Query: 1534 FFHALSCRSNMFSDNAELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDE 1355
F HA+ R+N+F++NAELPGTLTRK+MFY+RD+Y AYDGT+R+AYGQQ+++FSY S ++
Sbjct: 874 FVHAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSY-SILED 932
Query: 1354 SDKDFEHSQFSSEEDSECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKV 1175
S + E +D+E LGG+PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK V
Sbjct: 933 STEGGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMV 992
Query: 1174 LECAPARTSVDRTAXXXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHD 995
L+C + S + TA YG EY AL VKNHL+RV F +++ +VMI Y HD
Sbjct: 993 LDCCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHD 1052
Query: 994 AEETKGIKLSPWISHFHLNKEWMIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSK 818
+ G SPWI HFH++K+ M+R+R+N+ V + L + YN RE+ + +LPRL F SK
Sbjct: 1053 VQ---GTNFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSK 1109
Query: 817 NCILDNGHKKLKE----YCVEVAVEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDI 650
NC + K KE +C+ VA E +S LD IRD VIP+LL +KGF ++V+I
Sbjct: 1110 NC---SSAYKWKEHDDSFCMSVAAETSESLIQLDTIRDMVIPLLLETPIKGFWASEKVEI 1166
Query: 649 LWDSQSQPDGQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFG 470
L +S +LFL+++M+K C PG FW L++ACIPIMDLIDW+ SHPD VY+IS +G
Sbjct: 1167 LCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISGTYG 1226
Query: 469 ITSAYSYFLGSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISS 290
I +A+ YF+ SLK +DIGR+IH HL + +D LSVTGEFHGLS KGL+QQR +SISS
Sbjct: 1227 IDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMSISS 1286
Query: 289 PFTQACFSNPEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQ 110
PF QAC SNP CF+ AAK GS+D L GT+DAVAWG+EAP GTGGPF+I+YSGKVHN +
Sbjct: 1287 PFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHNLTR 1346
Query: 109 TENIYGTLLSLK 74
E IY L S+K
Sbjct: 1347 GEGIYKNLHSIK 1358
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 1212 bits (3137), Expect = 0.0
Identities = 648/1373 (47%), Positives = 875/1373 (63%), Gaps = 30/1373 (2%)
Frame = -3
Query: 4114 DIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGAT 3935
++ E +P +L +KF L+ D+EKFS+V+I + D+ + +LGLPN + QC TCG
Sbjct: 29 ELSLEVKMPEAKLNAIKFSLMTSSDMEKFSSVSIIEMRDVTNAKLGLPNGAPQCATCGFR 88
Query: 3934 NRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKR 3755
N +DC+GHFGVIKL T+++P+ + EVV +LNQICP C
Sbjct: 89 NIRDCDGHFGVIKLAATVHNPYFIEEVVQLLNQICPGC---------------------- 126
Query: 3754 LLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAI 3575
L L QN T + Q CKYCS++ + YP+I
Sbjct: 127 ---------LTLKQNGETKGDGTTI-----------------QATCKYCSKDGAKLYPSI 160
Query: 3574 KFKI--SSKDTRGR-----------KCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPM 3434
FK+ S + T R K +I AEV +V K N+ E+LP DFW+F+P
Sbjct: 161 IFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVASRVTHKSKNKVPHEILPQDFWDFLP- 219
Query: 3433 VPSQHGKPESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVV 3254
+P +++K LSP Q F +L+++DPE I PRREL+FLSC+P++PNC RVV
Sbjct: 220 ---DDNQPPQSNVTKKILSPYQVFHMLKKIDPELINQVTPRRELLFLSCLPVTPNCHRVV 276
Query: 3253 ETSHVFSDGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSK 3074
E + SDGPRL+FD AYK +VD SR+ID++ QH QFG A+ V +RV +CL SK
Sbjct: 277 EMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVYASSAVTSRVMECLKSSK 336
Query: 3073 LHSNKSVEDRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLP 2894
L+S KS + + + G KW+K+++LSKR+DN FR +M+GDPKI + EIG+P
Sbjct: 337 LYSRKSDGE-------SSTSTDTYGTKWLKDIILSKRSDNAFRSVMVGDPKINLNEIGMP 389
Query: 2893 QDVSETLEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYR 2714
D++ L ++EQV+ +N + + L C+ HLL+K L RR G+LI + ++N+L++GD YR
Sbjct: 390 MDLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGRLIFIRKANKLEIGDIAYR 449
Query: 2713 PLENGDFILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQ 2534
PL++GD ILVNRPPSVHQHSL+ALS KIL S +SINPLCC P GDFDGDCLHGYVPQ
Sbjct: 450 PLQDGDLILVNRPPSVHQHSLIALSAKILSSHSAVSINPLCCGPFQGDFDGDCLHGYVPQ 509
Query: 2533 SLRARVELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLC 2354
SL++RVEL EL+ QL NAQDGRSL+SLTHDSLTAAH L VFL K E QQL+MLC
Sbjct: 510 SLQSRVELDELVGLSGQLLNAQDGRSLVSLTHDSLTAAHQLTSSDVFLQKAEFQQLQMLC 569
Query: 2353 TCESQ--YPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSF 2180
+ S P+I+ +S P WTG+QLF ML P ++ + + I + + SF
Sbjct: 570 SSVSSTPMPSILKSSKSQGPLWTGKQLFGMLIPSGMNINFDEKL-HIKDSEVLAFSSGSF 628
Query: 2179 LSQNSISGILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKL 2000
QN+ S + MF+ YG KAL +L S+QDVLCEFLTMRGLSVSL D YL SD Y+R+KL
Sbjct: 629 WLQNNTSSLFSVMFEEYGCKALEFLSSSQDVLCEFLTMRGLSVSLSDFYLLSDHYSRRKL 688
Query: 1999 IDEVRCGLEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRPINLASI 1820
I+EV L+EA+ + +++L P LK +D DD L+S + + + PI +SI
Sbjct: 689 IEEVHLALDEAEEAFQIKQILLNPVSIPYLKYYDGADDLLNSYEQSDYTQVSLPIIQSSI 748
Query: 1819 AKFKEFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIP 1640
FK F +L ++H + S++NS++ M+ +GSKGS+LK VQQ C+G QL A + PF IP
Sbjct: 749 TSFKSVFNDLLKMVHQHASKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASIFPFRIP 808
Query: 1639 DKLSCPE------------DG-FDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMF 1499
+LSC DG + GG+N YAVI SFLDGLNPLEC HA+S R+N F
Sbjct: 809 SELSCVSWNRHKSLNCEMTDGTSERMGGQNIYAVIRNSFLDGLNPLECLLHAISGRANFF 868
Query: 1498 SDNAELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSS 1319
S+NA++PGTLTRK+M++LRD Y AYDGT+R++YGQQ++QFSY + +D F
Sbjct: 869 SENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVQFSYNT----ADGMFRDHDLEG 924
Query: 1318 EEDSECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDR 1139
E G PVGS AACSISEAAYGALDHPVN+LE SPL+NL++VL+C + SVD
Sbjct: 925 EP--------GAPVGSWAACSISEAAYGALDHPVNALEDSPLMNLQEVLKCRKSTKSVDH 976
Query: 1138 TAXXXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPW 959
T YGFEYA+L VK+HL+RV FSD+V +VMI Y D ++T+G +PW
Sbjct: 977 TGLLFLSKHLRKYRYGFEYASLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQG---NPW 1033
Query: 958 ISHFHLNKEWMIRKRINLPSVLDVLNRKYN-LEREKDRLLPRLFFTSKNCILDNGHKKLK 782
I+HFHL++E M KR+ L ++ L +YN L ++ + +P + ++ NC + N K
Sbjct: 1034 ITHFHLSQETMKIKRLRLGFIVRELIEQYNALRKQSNNTIPSVCISNSNCSVGNECVKNC 1093
Query: 781 EYCVE-VAVEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPDGQLFLK 605
C+ VA + +S L++I++ VIP +L LKGF++FK V + + Q D +L +K
Sbjct: 1094 TCCITMVAQVESNSTSQLNIIKERVIPSILETLLKGFLEFKNVKV----EYQQDSELVVK 1149
Query: 604 ISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLA 425
+ M++ C GKFW L+NACIPIM+LIDWERS P+ V DI ++GI SA+ +F+ SL+
Sbjct: 1150 VGMSEHCKSGKFWAALQNACIPIMELIDWERSQPERVNDIFCSYGIDSAWKFFVESLRST 1209
Query: 424 VSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFI 245
IGRNI +HLL+V+D LSV+G+FHGL+++GLK QR LSISSPF++ACFS P FI
Sbjct: 1210 TDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLSISSPFSEACFSRPAHSFI 1269
Query: 244 EAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTL 86
AAK SVD L GT+DA+AWG+E VGT GPFKI+YSGK KQ ENIY L
Sbjct: 1270 NAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSLETKQNENIYDFL 1322
>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nelumbo nucifera]
Length = 1489
Score = 1212 bits (3136), Expect = 0.0
Identities = 653/1420 (45%), Positives = 905/1420 (63%), Gaps = 50/1420 (3%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
M +D+ EQ VPSG L G++F++L +DIEK S I+ A+++ RLG PN SQC+TC
Sbjct: 1 MDDDVFIEQQVPSGFLKGIQFNVLTEEDIEKCSVTAIDAANEVTDPRLGFPNPLSQCSTC 60
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFT 3764
G N K+C+GH G+IK + +P + E V ILN ICP C+ + R DL+I K T
Sbjct: 61 GGKNLKNCDGHIGIIKFAVNVLNPFFISETVQILNSICPGCRSV----RHDLKI-KDTDT 115
Query: 3763 LKRLLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQ-PGCKYCSR--NSG 3593
LK L + HQ CKYC++ +S
Sbjct: 116 LKSLTMD------------------------------------SHQYKDCKYCAKQGSSK 139
Query: 3592 EWYPAIKFKISSKD-TRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHG 3416
EWYP +KFK++SKD ++ ++ EVNEK+PKKF N++L EVLP+D+W+ I P Q
Sbjct: 140 EWYPTMKFKVASKDLSKKNTSSVIVEVNEKLPKKFANKNLGEVLPTDYWDCIQKDPEQ-- 197
Query: 3415 KPESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVF 3236
+ + ++ +LSP Q + +L+ +D F+K FV R E IFLSC P++PNC R++E +H+
Sbjct: 198 EESFLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEAIFLSCFPVTPNCHRIMELTHLS 257
Query: 3235 SDGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKS 3056
S+G +L+FD+ A K L+D+ R +E H V +CL+VSKLH++KS
Sbjct: 258 SNGHQLAFDERTKAMKKLIDSKRHANELSLH--------------VRNCLSVSKLHTDKS 303
Query: 3055 VEDRPSYSLSKNDN-PSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSE 2879
+ + L KND+ S+ GLKWIKE++L KRTD FRM +IGDPKI + EIG+P+ V+E
Sbjct: 304 L--KKDTVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKISLCEIGVPRMVAE 361
Query: 2878 TLEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENG 2699
L+I E +NVHN +KL FHL+ KG RRKGKL+ L +++L++GD YR L++G
Sbjct: 362 NLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSELKLGDIVYRHLDDG 421
Query: 2698 DFILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRAR 2519
D +L+NRPPSVHQHSL+ALSVK+LP+ SV+SINPLCC+PL GDFDGDCLHG++ Q++ R
Sbjct: 422 DIVLINRPPSVHQHSLMALSVKVLPINSVVSINPLCCSPLSGDFDGDCLHGFIAQAIDCR 481
Query: 2518 VELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQ 2339
VEL EL++ QL N Q+G++LLSL+HDSL+AAHL+ + VFL+ F+MQQL+MLC + Q
Sbjct: 482 VELRELVALSKQLVNGQNGQNLLSLSHDSLSAAHLVTQNGVFLDMFQMQQLKMLCPHQLQ 541
Query: 2338 YPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSIS 2159
P I+ A + P WTG+QLF ML P + D S+ VKI G + S G S ++
Sbjct: 542 IPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLCSFGESSWLRSRAG 601
Query: 2158 GILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCG 1979
I + Y +A+++LF+AQDV CE+++M G SVSL D+Y+ SD ++RK ++DEVRCG
Sbjct: 602 SIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRKNMLDEVRCG 661
Query: 1978 LEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRP---INLASIAKFK 1808
L+E K + +LM++P+M LL+ +D + + + + + + + S++ F+
Sbjct: 662 LQEIKKKIYIKQLMVDPEMVHLLR-YDGENTKTNGYRVDQECPSNQESVVLCQVSVSSFR 720
Query: 1807 EFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLS 1628
E F ++Q++IH Y S +NSLL M++AGSKG+LLK+VQQG+CLG Q ++ L F IP KLS
Sbjct: 721 EAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPLSFQIPCKLS 780
Query: 1627 CPEDGFDSSG-------GENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPGTL 1469
C + S YAV+E SFLDGLNPLECF H++S R N F +NA+LPGTL
Sbjct: 781 CASWNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFGENADLPGTL 840
Query: 1468 TRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNKLG 1289
TRK+MFY+RD+Y AYDGT+R AYG QL+QFSYG K +S +D + + +G
Sbjct: 841 TRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSVQD--PCGLFGGSPNAYDGVG 898
Query: 1288 GQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXXXXXX 1109
GQPVGSL+ACSISEAAY ALD P++ LE SPLLNLKKVLEC S D+TA
Sbjct: 899 GQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQTASLFLSKKL 958
Query: 1108 XXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHLNKEW 929
GFEY A VKNHL+RV FSDVV++VM+ ++ + + SPW+ HFH+ KE
Sbjct: 959 GRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFS---PQRHSQMSASPWVCHFHVCKEM 1015
Query: 928 MIRKRINLPSVLDVLNR-------KYNLE------REKDRL--------LPRLFFTSKNC 812
M R+ +N+ S++D L R K NL R+K +L LP L S++C
Sbjct: 1016 MERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIKLPNLMILSRDC 1075
Query: 811 ILDNGHKKLKEYCVEVAVE-DCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQ 635
+ + + +C+ V VE DS LD +RD V+P L +KGF++FK VDILW+
Sbjct: 1076 TFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVPFLSRTVIKGFLEFKSVDILWNDL 1135
Query: 634 SQ-------PDGQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDA 476
Q G+L+LK+ M++ C KFW +L+NAC+P+MDLIDWERS+PD +Y+I A
Sbjct: 1136 PQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMDLIDWERSYPDNIYNIVCA 1195
Query: 475 FGITSAYSYFLGSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSI 296
+GI + + YFL SLK A+SDIG+ + EHLLLV++SLS TGEF GLSAKG+K+Q S+
Sbjct: 1196 YGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGEFLGLSAKGIKRQMDQASV 1255
Query: 295 SSPFTQACFSNPEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQ 116
SSPF QACFSNP CFI+AAK G+VD L G +D+V+WG++ P+GTGG F I+YSGK
Sbjct: 1256 SSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVPIGTGGHFDILYSGKGFTP 1315
Query: 115 KQTENIYGTLL--SLKHDRSNQ----NPCHINCDKWKGQS 14
+ NIY L S H + + + C C KW+ QS
Sbjct: 1316 AKPTNIYSALCHESKSHGENVETGLTDACRKVCCKWEKQS 1355
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Brachypodium
distachyon] gi|721640272|ref|XP_010231681.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Brachypodium
distachyon]
Length = 1470
Score = 1198 bits (3100), Expect = 0.0
Identities = 645/1369 (47%), Positives = 865/1369 (63%), Gaps = 30/1369 (2%)
Frame = -3
Query: 4102 EQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGATNRKD 3923
E VP +L +KFDLL+ DIE S+ NI +ASD+ S +LGLPNA+ QC TCG+ N +D
Sbjct: 11 EMDVPMAELKALKFDLLSSADIETLSSANIIEASDVTSAKLGLPNAAPQCVTCGSQNVRD 70
Query: 3922 CEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKRLLLR 3743
C+GH GVIKLP T+Y P+ + ++V LNQICP C K
Sbjct: 71 CDGHSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTPK---------------------- 108
Query: 3742 MKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAIKFKI 3563
QNR K+ + Q CKYCS++ YP++ FK+
Sbjct: 109 ---------QNRDT----------------KRSDAATIQEPCKYCSKDG--LYPSVIFKV 141
Query: 3562 ---------SSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKP 3410
SK R V +V N+S EVLP D+WNF+P H +P
Sbjct: 142 LTSPRITLSKSKLQRNTSVMDKVSVTAEVINMSKNKSSLEVLPHDYWNFVP-----HNQP 196
Query: 3409 ESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSD 3230
+ +KI LSP Q F IL+++D E I F PRREL+FLSC+P++PN RV E + FSD
Sbjct: 197 PQPNTTKILLSPYQVFHILKQVDLELITKFAPRRELLFLSCLPVTPNRHRVAEMPYRFSD 256
Query: 3229 GPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVE 3050
GP L++D AYK VD S+KID++ QH QF A+ V +RV +CL SKL+S K+ +
Sbjct: 257 GPSLAYDDRTKAYKRTVDASKKIDDYRQHPQFSVLASSFVTSRVMECLQSSKLYSKKTDK 316
Query: 3049 DRP--SYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSET 2876
+ SY S N S G KW+K+ +LSKR+D FR IM+GDPKI++ EIG+P D+++
Sbjct: 317 ESSTDSYGTSVKKNDSY-GTKWLKDAILSKRSDYAFRSIMVGDPKIRLHEIGIPMDLAD- 374
Query: 2875 LEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGD 2696
L + E V+++N + L C+ HLL+K L ARR GKLI + + NQL++GD YRPL++GD
Sbjct: 375 LFVPEHVSIYNFKSINLKCNLHLLAKELLIARRNGKLIYVRKENQLEIGDIVYRPLQDGD 434
Query: 2695 FILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARV 2516
ILVNRPPSVHQHSL+ALS K+LPV+SV++INPL CAPL GDFDGDCLHGYVPQS+ +RV
Sbjct: 435 LILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCAPLSGDFDGDCLHGYVPQSIGSRV 494
Query: 2515 ELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCES-- 2342
EL EL+S HQL N QDGRSL+SLTHDSL AAHLL V LNK E QQL+MLC S
Sbjct: 495 ELGELVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTSSGVLLNKTEFQQLQMLCVSLSPT 554
Query: 2341 QYPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSI 2162
P++I + + P WTG+QLF ML P ++ S + I + + G SF QN+
Sbjct: 555 PVPSVIKSINPQGPLWTGKQLFGMLLPSGMNFSPDPKL-HIKDSEVLACSGGSFWLQNNT 613
Query: 2161 SGILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRC 1982
SG+ +FK YG +AL +L SAQD+LCEFLTMRGLSVSL D+YL SD Y+R+K +EV
Sbjct: 614 SGLFSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSVSLSDIYLFSDHYSRRKFAEEVNL 673
Query: 1981 GLEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRPINLASIAKFKEF 1802
L+EA+ + +++L P+ LK +D+ DD S F ++ PI +SI FK
Sbjct: 674 ALDEAEEAFRVTQILLSPNFIPHLKCYDDCDDLSDSYEQSDFVQSNLPIIKSSIMAFKSV 733
Query: 1801 FRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC- 1625
F +L ++ + ++NS++ M+ AGSKGS+LK VQQ C+G QL A PF IP +L+C
Sbjct: 734 FSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAACVGLQLPAGKFPFRIPSELTCA 793
Query: 1624 ------------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAEL 1481
E GG+NS+AVI SF++GLNPLEC H++S R+N FS+NA++
Sbjct: 794 SWNRHKSLDCDISEGARKRLGGQNSHAVIRNSFIEGLNPLECLLHSISGRANFFSENADV 853
Query: 1480 PGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSEC 1301
PGTLT+ +M++LRDIY AYDGT+R++YGQQ++QF+Y + +D + +F
Sbjct: 854 PGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYDTAEDIYTDCGQEGEF-------- 905
Query: 1300 NKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXX 1121
G PVGS AACSISEAAYGALDHPVN +E SPL+NL++VL+C S+D
Sbjct: 906 ----GAPVGSWAACSISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLLFL 961
Query: 1120 XXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHL 941
YGFEYA+L V+N+L+ + FS++V +VMI Y ++TKG SPWI+HFH+
Sbjct: 962 SKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKG---SPWITHFHI 1018
Query: 940 NKEWMIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSKNCILDNGHKKLKEYCVEV 764
+KE M RKR+ L +++ L YN +R++ + ++P+++ + C D+ + C+ V
Sbjct: 1019 SKEMMKRKRLGLRLLVEDLTEHYNAKRDQLNNVIPKVYISKCKCSDDDDCINNQTCCITV 1078
Query: 763 AVED---CDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPDGQLFLKISMA 593
+D S LD ++ IP+LL +KGF++FK V+I Q Q D +L +K++M+
Sbjct: 1079 VAQDESNSTSTSQLDDLKKRAIPVLLATPVKGFLEFKDVEI----QCQRDNELVVKVNMS 1134
Query: 592 KSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLAVSDI 413
K C G FW TLK ACI IM LIDWERS P VYDI GI SA+ YF+ SL+ DI
Sbjct: 1135 KHCKSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFCPCGIDSAWKYFVESLRSKTDDI 1194
Query: 412 GRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFIEAAK 233
GRNIH EHLL+V+D+LSV+G+FHGLS++GLKQQR LS SSPF++ACFS P FI+AAK
Sbjct: 1195 GRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTSSPFSEACFSRPADTFIKAAK 1254
Query: 232 HGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTL 86
SVD L G +DA+AWG+E P GT GPFKI+Y+GK H Q ENIYG L
Sbjct: 1255 QCSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHEPVQNENIYGFL 1303
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
TPA: putative DNA dependent RNA polymerase D largest
subunit family protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
RNA polymerase D largest subunit family protein [Zea
mays]
Length = 1444
Score = 1186 bits (3067), Expect = 0.0
Identities = 643/1402 (45%), Positives = 882/1402 (62%), Gaps = 41/1402 (2%)
Frame = -3
Query: 4090 PSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGATNRKDCEGH 3911
P L +KFDL+ D+EK S+++I + SD+ S +LGLPN S QC TCG+ +DC+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 3910 FGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKRLLLRMKFE 3731
FGV KL T+++P+ + +VVH LN+ICP C
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGC------------------------------ 97
Query: 3730 KLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAIKFK----- 3566
LS + K+L ER + Q CKYCS++ + YP+I FK
Sbjct: 98 ----------LSPREGIDTKRL-------EREKVQATCKYCSKDGSKLYPSIVFKTLSSP 140
Query: 3565 ----ISSKDTRG----RKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKP 3410
SK R + +I AE +++P + + E LP DFW+F+P K
Sbjct: 141 RVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP----SENKQ 196
Query: 3409 ESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSD 3230
+++KI LSP Q F++L++ DPE IK FV RREL+FLSC+P++PNC RVVE + D
Sbjct: 197 VQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLPD 256
Query: 3229 GPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVE 3050
G RL+FD AYK +VD SR+ID++ QH F A+ V++RV +CL SKL+S K+
Sbjct: 257 G-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKA-- 313
Query: 3049 DRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETLE 2870
+ G+KW+K+VVLSKR+DN FR IM+GDPKI++ EIG+P+D+S +L
Sbjct: 314 -------DGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLV 366
Query: 2869 IAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDFI 2690
++E V+ +N L C+ HLL+K EL RR GKL+ L +++QL++GD YRPL++GD I
Sbjct: 367 VSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDII 426
Query: 2689 LVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVEL 2510
L+NRPPSVHQHSL+ALS KILP+ SV+SINPLCC P GDFDGDCLHGY+PQS+R+RVEL
Sbjct: 427 LINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVEL 486
Query: 2509 SELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLC-TCESQYP 2333
EL+S +QL N QDGR+L+SLTHDSL AAHLL VFL K E+QQL+MLC + + P
Sbjct: 487 EELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAP 546
Query: 2332 AIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISGI 2153
A+I + + WTG+QLFSML P ++ S + + + S G S+L QN+ SG+
Sbjct: 547 AVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWL-QNNTSGL 605
Query: 2152 LYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGLE 1973
MFK YG KAL++L SAQ+VLCEFLTMRGLSVSL D+Y+ SD Y+R+KL + V+ L
Sbjct: 606 FSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLALY 665
Query: 1972 EAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRPINLASIAKFKEFFRE 1793
EA+ + +++L+P +LK DET+D + + ++ + +SI FK+ FR+
Sbjct: 666 EAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQS--DCIQSNPSVIRSSIMAFKDVFRD 723
Query: 1792 LQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC---- 1625
L ++ ++S +NS++ M+ AGSKGS+LK QQ C+G QL A PF IP +LSC
Sbjct: 724 LLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISWN 783
Query: 1624 --------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPGTL 1469
E + GG+N YAVI+ SF++GLNPLEC HA+S R+N FS+NA++PGTL
Sbjct: 784 GQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVPGTL 843
Query: 1468 TRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNKLG 1289
TRK+M++LRDI+ AYDGT+R++YGQQ++QFSY S D DK
Sbjct: 844 TRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSVDDLVDK------------------L 885
Query: 1288 GQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXXXXXX 1109
G PVG AACSISEAAYGAL+HPVN LE SPL+NL++V +C A S D
Sbjct: 886 GAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHL 945
Query: 1108 XXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHLNKEW 929
YG EYA+L VKNHL+RV+FSD+V ++MI Y HD +G+ W +HFH+NK
Sbjct: 946 KKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHINKAM 1001
Query: 928 MIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSKNCILDNGHKKLKEYCVE-VAVE 755
M +KR+ L V+D L ++Y+ R++ + +P + + + C++ + K C+ VA
Sbjct: 1002 MKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCCIAVVAHA 1061
Query: 754 DCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPDGQLFLKISMAKSCSPG 575
+ +S LD I+ VIP +L LKGF++FK V+I Q DG+L +K+ M++ C G
Sbjct: 1062 ERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGELLVKVCMSEHCKGG 1117
Query: 574 KFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLAVSDIGRNIHP 395
+FW TL+NACIP+M+LIDWE S P V DI ++GI SA+ YF+ SLK A +D GRNI
Sbjct: 1118 RFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLKSATTDTGRNIRR 1177
Query: 394 EHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFIEAAKHGSVDC 215
EHLL+++DSLSVTG+FH LS++GLKQQR LSISSPF++ACFS P + FI AAK SVD
Sbjct: 1178 EHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQSFINAAKQCSVDN 1237
Query: 214 LYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTLLSLK------------- 74
L G++DAVAWG+E GT GPF+I++SGK H +Q E+IY L S K
Sbjct: 1238 LCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKVRNFEKNHLDTRR 1297
Query: 73 HDRSNQNPCHINCDKWKGQSGV 8
N + C + C KG + V
Sbjct: 1298 QSTENASICRLACKSSKGSTTV 1319
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 1181 bits (3056), Expect = 0.0
Identities = 642/1402 (45%), Positives = 881/1402 (62%), Gaps = 41/1402 (2%)
Frame = -3
Query: 4090 PSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGATNRKDCEGH 3911
P L +KFDL+ D+EK S+++I + SD+ S +LGLPN S QC TCG+ +DC+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 3910 FGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKRLLLRMKFE 3731
FGV KL T+++P+ + +VVH LN+ICP C
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGC------------------------------ 97
Query: 3730 KLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAIKFK----- 3566
LS + K+L ER + Q CKY S++ + YP+I FK
Sbjct: 98 ----------LSPREGIDTKRL-------EREKVQATCKYYSKDGSKLYPSIVFKTLSSP 140
Query: 3565 ----ISSKDTRG----RKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKP 3410
SK R + +I AE +++P + + E LP DFW+F+P K
Sbjct: 141 RVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP----SENKQ 196
Query: 3409 ESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSD 3230
+++KI LSP Q F++L++ DPE IK FV RREL+FLSC+P++PNC RVVE + D
Sbjct: 197 VQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLPD 256
Query: 3229 GPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVE 3050
G RL+FD AYK +VD SR+ID++ QH F A+ V++RV +CL SKL+S K+
Sbjct: 257 G-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKA-- 313
Query: 3049 DRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETLE 2870
+ G+KW+K+VVLSKR+DN FR IM+GDPKI++ EIG+P+D+S +L
Sbjct: 314 -------DGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLV 366
Query: 2869 IAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDFI 2690
++E V+ +N L C+ HLL+K EL RR GKL+ L +++QL++GD YRPL++GD I
Sbjct: 367 VSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDII 426
Query: 2689 LVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVEL 2510
L+NRPPSVHQHSL+ALS KILP+ SV+SINPLCC P GDFDGDCLHGY+PQS+R+RVEL
Sbjct: 427 LINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVEL 486
Query: 2509 SELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLC-TCESQYP 2333
EL+S +QL N QDGR+L+SLTHDSL AAHLL VFL K E+QQL+MLC + + P
Sbjct: 487 EELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAP 546
Query: 2332 AIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISGI 2153
A+I + + WTG+QLFSML P ++ S + + + S G S+L QN+ SG+
Sbjct: 547 AVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWL-QNNTSGL 605
Query: 2152 LYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGLE 1973
MFK YG KAL++L SAQ+VLCEFLTMRGLSVSL D+Y+ SD Y+R+KL + V+ L
Sbjct: 606 FSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLALY 665
Query: 1972 EAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRPINLASIAKFKEFFRE 1793
EA+ + +++L+P +LK DET+D + + ++ + +SI FK+ FR+
Sbjct: 666 EAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQS--DCIQSNPSVIRSSIMAFKDVFRD 723
Query: 1792 LQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC---- 1625
L ++ ++S +NS++ M+ AGSKGS+LK QQ C+G QL A PF IP +LSC
Sbjct: 724 LLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCISWN 783
Query: 1624 --------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPGTL 1469
E + GG+N YAVI+ SF++GLNPLEC HA+S R+N FS+NA++PGTL
Sbjct: 784 GQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVPGTL 843
Query: 1468 TRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNKLG 1289
TRK+M++LRDI+ AYDGT+R++YGQQ++QFSY S D DK
Sbjct: 844 TRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSVDDLVDK------------------L 885
Query: 1288 GQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXXXXXX 1109
G PVG AACSISEAAYGAL+HPVN LE SPL+NL++V +C A S D
Sbjct: 886 GAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHL 945
Query: 1108 XXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHLNKEW 929
YG EYA+L VKNHL+RV+FSD+V ++MI Y HD +G+ W +HFH+NK
Sbjct: 946 KKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFHINKAM 1001
Query: 928 MIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSKNCILDNGHKKLKEYCVE-VAVE 755
M +KR+ L V+D L ++Y+ R++ + +P + + + C++ + K C+ VA
Sbjct: 1002 MKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCCIAVVAHA 1061
Query: 754 DCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPDGQLFLKISMAKSCSPG 575
+ +S LD I+ VIP +L LKGF++FK V+I Q DG+L +K+ M++ C G
Sbjct: 1062 ERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGELLVKVCMSEHCKGG 1117
Query: 574 KFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLAVSDIGRNIHP 395
+FW TL+NACIP+M+LIDWE S P V DI ++GI SA+ YF+ SLK A +D GRNI
Sbjct: 1118 RFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLKSATTDTGRNIRR 1177
Query: 394 EHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFIEAAKHGSVDC 215
EHLL+++DSLSVTG+FH LS++GLKQQR LSISSPF++ACFS P + FI AAK SVD
Sbjct: 1178 EHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQSFINAAKQCSVDN 1237
Query: 214 LYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTLLSLK------------- 74
L G++DAVAWG+E GT GPF+I++SGK H +Q E+IY L S K
Sbjct: 1238 LCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKVRNFEKNHLDTRR 1297
Query: 73 HDRSNQNPCHINCDKWKGQSGV 8
N + C + C KG + V
Sbjct: 1298 QSTENASICRLACKSSKGSTTV 1319
>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
vinifera]
Length = 1458
Score = 1177 bits (3046), Expect = 0.0
Identities = 627/1385 (45%), Positives = 873/1385 (63%), Gaps = 25/1385 (1%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
M ND + EQ VPSG L+G+KFD+ +D+EK S + I+ +++ +LG+PN S QC+TC
Sbjct: 1 MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFT 3764
GA + K CEGHFGVIK P TI HP+ + EVV ILN+ICP CK TR+ +K
Sbjct: 61 GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCK----STRQGQWVKGADSG 116
Query: 3763 LKRLLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWY 3584
+RL GCKYC+ NS +WY
Sbjct: 117 SRRL----------------------------------------RSKGCKYCAANSNDWY 136
Query: 3583 PAIKFKISSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPES 3404
P +KFK+SSKD RK I E+NEK+PKK +S VLP D+W+FIP P Q +
Sbjct: 137 PTMKFKVSSKDLF-RKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQ--EENC 193
Query: 3403 IDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGP 3224
++ ++ LS AQ ++L+++DP FIK FV R + FL+C+P++PN RV E +H S+G
Sbjct: 194 LNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQ 253
Query: 3223 RLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVEDR 3044
L FD+ + AYK LVD +E ++ RV DCL SKL S KS
Sbjct: 254 TLIFDQHSRAYKKLVDFRGTANE--------------LSCRVLDCLKTSKLRSEKST--- 296
Query: 3043 PSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETLEIA 2864
SK+ ++GLKWIKEV+L KRT+++FRMI++GDPK+++ EIG+P ++E L I+
Sbjct: 297 -----SKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLIS 351
Query: 2863 EQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDFILV 2684
E +N N +K+ C+ LL KG+ + RRKG L + R N Q GD YRPL +GD +L+
Sbjct: 352 EHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLI 411
Query: 2683 NRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVELSE 2504
NRPPS+HQHS++ALSVK+LP+ SV+SINPLCC+P GDFDGDCLHGY+PQS+ +RVELSE
Sbjct: 412 NRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSE 471
Query: 2503 LLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQYPAII 2324
L++ + QL N Q GR+LLSL+ DSL+AAHL+ME V LN F+MQQLEM C + Q PAII
Sbjct: 472 LVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAII 531
Query: 2323 NASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISGILYG 2144
A + WTG+QLFSML P + V+I +G + S S ++ +
Sbjct: 532 KAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSS 591
Query: 2143 MFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGLEEAK 1964
+ K KAL++L++AQ+VLCE+L+MRGLSVSL D+YL+SD +RK +IDEV CGL A+
Sbjct: 592 LVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAE 651
Query: 1963 ASCHFNELMLEPDMGFLLKTFDETDDSL--HSMNIPKFARATRPINLASIAKFKEFFREL 1790
+CHF +L+++ FL+ + + + + ++ + + + +S+ FK+ FR++
Sbjct: 652 QTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDI 711
Query: 1789 QNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC----- 1625
QN+++ Y +++NSLL M++AGSKG+LLKLVQQG+CLG Q S L F IP +LSC
Sbjct: 712 QNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNK 771
Query: 1624 -------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPGTLT 1466
D + + YAV+E SFL GLNPLECF H+++ R + FSDNA+LPGTLT
Sbjct: 772 QKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLT 831
Query: 1465 RKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSE---EDSECNK 1295
R++MF++RD+Y AYDGT+RNAYG QL+QFSY + EH+ S+ ED+
Sbjct: 832 RRLMFFMRDLYIAYDGTVRNAYGNQLVQFSY---------NIEHTSTPSDGINEDTCAYD 882
Query: 1294 LGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXXXX 1115
+GGQPVGS++AC+ISEAAY ALD P++ LE SPLLNLK+VLEC +++ DRT
Sbjct: 883 MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSK 942
Query: 1114 XXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHLNK 935
+GFEY AL VKNHL+++ FSD+V++VMI ++ + +T SPW+ HFH+ +
Sbjct: 943 KLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKT---HFSPWVCHFHVCE 999
Query: 934 EWMIRKRINLPSVLDVLNRKYNLEREKDRL-LPRLFFTSKNCILDNGHKKLKEYCVEVA- 761
E ++ + S++D L K N R + ++ LP L TSK+C +D + +C+ V+
Sbjct: 1000 EIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSI 1059
Query: 760 VEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPD------GQLFLKIS 599
V S LD +RD VIP LL +KG +D K+VDILW+ D G+L+L++
Sbjct: 1060 VNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVY 1119
Query: 598 MAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLAVS 419
++ C FW L +AC+ IMD+IDWERSHPD ++DI +GI + + YFL SLK A+S
Sbjct: 1120 VSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAIS 1179
Query: 418 DIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFIEA 239
DIG+ + PEHLLLV+ LS TGEF GL+AKG+ +Q+ SISSPF Q CFS+P CFI+A
Sbjct: 1180 DIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKA 1239
Query: 238 AKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTLLSLKHDRSN 59
K D L+G++DA+AWG+ VG+GG F I+YS K H + E+IY L +
Sbjct: 1240 GKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLL-------GS 1292
Query: 58 QNPCH 44
Q CH
Sbjct: 1293 QTSCH 1297
>ref|XP_004970757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Setaria italica] gi|835980385|ref|XP_012701774.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Setaria italica]
Length = 1451
Score = 1176 bits (3043), Expect = 0.0
Identities = 633/1371 (46%), Positives = 882/1371 (64%), Gaps = 33/1371 (2%)
Frame = -3
Query: 4093 VPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGATNRKDCEG 3914
+P L + FDL+ D+EK S+++I + SD+ S +LGLPN SSQC TCG+ + +DC+G
Sbjct: 7 LPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCDG 66
Query: 3913 HFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKRLLLRMKF 3734
HFGV KL T+++P+ + EVVH LNQICP C +++
Sbjct: 67 HFGVTKLAATVHNPYFIDEVVHFLNQICPGCLNLRE------------------------ 102
Query: 3733 EKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAIKFK---- 3566
N+ +K L ER + CKYCS++ + YP++ FK
Sbjct: 103 ----------------NIDLKTL-------ERETVRATCKYCSKDGSKLYPSVIFKTLSS 139
Query: 3565 ---ISSKDTRGR------KCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGK 3413
+ SK R + +I AE ++ K + E LP D+W+F VPS++ +
Sbjct: 140 PRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKGSLEGLPQDYWDF---VPSENQQ 196
Query: 3412 PESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFS 3233
+S ++KI LSP Q F +L++ DPE IK FV RREL+FLSC+P++PNC RVVE + S
Sbjct: 197 LQST-MTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLS 255
Query: 3232 DGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSV 3053
DG RL+FD AYK +VD S++ID++ QH QF A+ V++RV +CL SKL+S K+
Sbjct: 256 DG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKT- 313
Query: 3052 EDRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETL 2873
+ G+KW+K+ VLSKR+DN FR IM+GDPKI++ EIG+P++++ L
Sbjct: 314 --------DVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNL 365
Query: 2872 EIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDF 2693
++E V+ +N++ + L C+ HLL+K EL RR GKL+ + ++NQL+VGD YRPL++GD
Sbjct: 366 VVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDL 425
Query: 2692 ILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVE 2513
IL+NRPPSVHQHSL+ALS KILP++SV+SINPLCC P LGDFDGDCLHGY+PQS+R+R+E
Sbjct: 426 ILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIE 485
Query: 2512 LSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCES--Q 2339
L EL+S QL N QDGRSL+SLTHDSL AAHLL VFL + E+QQL+MLC S
Sbjct: 486 LGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQMLCLSVSTTP 545
Query: 2338 YPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSIS 2159
PAII + + WTG+Q FSML P ++ S S + I S G S+L QNS +
Sbjct: 546 VPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWL-QNSTT 604
Query: 2158 GILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCG 1979
G+ MFK YGRKAL++L SAQ+VLCEFLTMRGLSVSL D+Y+ SD Y+R+KL V+
Sbjct: 605 GLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLA 664
Query: 1978 LEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRPINLASIAKFKEFF 1799
L+EA+ + +++L+P +LK DET+D + + + ++ + +SI FK+ F
Sbjct: 665 LDEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQS--DYIQSNLSVVRSSIMSFKDVF 722
Query: 1798 RELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC-- 1625
+L ++ +++S +NS++ M+ AGSKGS+LK VQQ C+G QL A PF IP +LSC
Sbjct: 723 NDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPFRIPSQLSCVS 782
Query: 1624 ----------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPG 1475
E + G+N YAVI SF++GLNPLEC HA+S R+N FS++A++PG
Sbjct: 783 WNRQKSLNCEAESTSEHVEGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFSEHADVPG 842
Query: 1474 TLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNK 1295
TLTRK+M++LRD++ AYDGT+R++YGQ ++QFSY + +D CN
Sbjct: 843 TLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSY----------------DTADDMCCNH 886
Query: 1294 --LG--GQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXX 1127
+G G PVGS AACSISEAAYGALDHPVN LE SPL+NL++V +C A S D
Sbjct: 887 DLVGELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLL 946
Query: 1126 XXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHF 947
Y EYA+L VKNHL+RV+FSD+V ++MI Y D K K PW +HF
Sbjct: 947 FLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD----KTRKGGPWTTHF 1002
Query: 946 HLNKEWMIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSKNCILDNGHKKLKEYCV 770
H++KE M +KR+ L V++ L ++Y+ R + + +P + + + C + + + C+
Sbjct: 1003 HISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACCI 1062
Query: 769 E-VAVEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPDGQLFLKISMA 593
VA + +S LD I+ VIP +L LKGF++FK V+I Q + DG+L +K+ M+
Sbjct: 1063 TLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGELLVKVGMS 1118
Query: 592 KSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLAVSDI 413
+ C G+FW TL+NACIP+M+LIDWE+S P VYDI ++GI SA+ F+ SLK SDI
Sbjct: 1119 EHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVESLKSVTSDI 1178
Query: 412 GRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFIEAAK 233
GRN+ EHLL+V+DSLSVTG+F LS++GL QQR+ LSISSPF++ACFS P + FI AAK
Sbjct: 1179 GRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPARSFINAAK 1238
Query: 232 HGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTLLS 80
H SVD L G++DA+AWG+E GT GPF+I+++GK H +Q E+IY L S
Sbjct: 1239 HCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFLRS 1289
>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
vinifera]
Length = 1460
Score = 1171 bits (3030), Expect = 0.0
Identities = 626/1387 (45%), Positives = 873/1387 (62%), Gaps = 27/1387 (1%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
M ND + EQ VPSG L+G+KFD+ +D+EK S + I+ +++ +LG+PN S QC+TC
Sbjct: 1 MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFT 3764
GA + K CEGHFGVIK P TI HP+ + EVV ILN+ICP CK TR+ +K
Sbjct: 61 GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCK----STRQGQWVKGADSG 116
Query: 3763 LKRLLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWY 3584
+RL GCKYC+ NS +WY
Sbjct: 117 SRRL----------------------------------------RSKGCKYCAANSNDWY 136
Query: 3583 PAIKFKISSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPES 3404
P +KFK+SSKD RK I E+NEK+PKK +S VLP D+W+FIP P Q +
Sbjct: 137 PTMKFKVSSKDLF-RKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQ--EENC 193
Query: 3403 IDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGP 3224
++ ++ LS AQ ++L+++DP FIK FV R + FL+C+P++PN RV E +H S+G
Sbjct: 194 LNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQ 253
Query: 3223 RLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVEDR 3044
L FD+ + AYK LVD +E ++ RV DCL SKL S KS
Sbjct: 254 TLIFDQHSRAYKKLVDFRGTANE--------------LSCRVLDCLKTSKLRSEKST--- 296
Query: 3043 PSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETLEIA 2864
SK+ ++GLKWIKEV+L KRT+++FRMI++GDPK+++ EIG+P ++E L I+
Sbjct: 297 -----SKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLIS 351
Query: 2863 EQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDFILV 2684
E +N N +K+ C+ LL KG+ + RRKG L + R N Q GD YRPL +GD +L+
Sbjct: 352 EHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLI 411
Query: 2683 NRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVELSE 2504
NRPPS+HQHS++ALSVK+LP+ SV+SINPLCC+P GDFDGDCLHGY+PQS+ +RVELSE
Sbjct: 412 NRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSE 471
Query: 2503 LLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQYPAII 2324
L++ + QL N Q GR+LLSL+ DSL+AAHL+ME V LN F+MQQLEM C + Q PAII
Sbjct: 472 LVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAII 531
Query: 2323 NASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISGILYG 2144
A + WTG+QLFSML P + V+I +G + S S ++ +
Sbjct: 532 KAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSS 591
Query: 2143 MFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGLEEAK 1964
+ K KAL++L++AQ+VLCE+L+MRGLSVSL D+YL+SD +RK +IDEV CGL A+
Sbjct: 592 LVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAE 651
Query: 1963 ASCHFNELMLEPDMGFLLKTFDETDDSL--HSMNIPKFARATRPINLASIAKFKEFFREL 1790
+CHF +L+++ FL+ + + + + ++ + + + +S+ FK+ FR++
Sbjct: 652 QTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDI 711
Query: 1789 QNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC----- 1625
QN+++ Y +++NSLL M++AGSKG+LLKLVQQG+CLG Q S L F IP +LSC
Sbjct: 712 QNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNK 771
Query: 1624 -------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPGTLT 1466
D + + YAV+E SFL GLNPLECF H+++ R + FSDNA+LPGTLT
Sbjct: 772 QKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLT 831
Query: 1465 RKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSE---EDSECNK 1295
R++MF++RD+Y AYDGT+RNAYG QL+QFSY + EH+ S+ ED+
Sbjct: 832 RRLMFFMRDLYIAYDGTVRNAYGNQLVQFSY---------NIEHTSTPSDGINEDTCAYD 882
Query: 1294 LGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXXXX 1115
+GGQPVGS++AC+ISEAAY ALD P++ LE SPLLNLK+VLEC +++ DRT
Sbjct: 883 MGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSK 942
Query: 1114 XXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHLNK 935
+GFEY AL VKNHL+++ FSD+V++VMI ++ + +T SPW+ HFH+ +
Sbjct: 943 KLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKT---HFSPWVCHFHVCE 999
Query: 934 EWMIRKRINLPSVLDVLNRKYNLEREKDRL-LPRLFFTS--KNCILDNGHKKLKEYCVEV 764
E ++ + S++D L K N R + ++ LP L TS ++C +D + +C+ V
Sbjct: 1000 EIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSNGRDCFVDMEKEDSDCFCITV 1059
Query: 763 A-VEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPD------GQLFLK 605
+ V S LD +RD VIP LL +KG +D K+VDILW+ D G+L+L+
Sbjct: 1060 SIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLR 1119
Query: 604 ISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLA 425
+ ++ C FW L +AC+ IMD+IDWERSHPD ++DI +GI + + YFL SLK A
Sbjct: 1120 VYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSA 1179
Query: 424 VSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFI 245
+SDIG+ + PEHLLLV+ LS TGEF GL+AKG+ +Q+ SISSPF Q CFS+P CFI
Sbjct: 1180 ISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFI 1239
Query: 244 EAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTLLSLKHDR 65
+A K D L+G++DA+AWG+ VG+GG F I+YS K H + E+IY L
Sbjct: 1240 KAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLL------- 1292
Query: 64 SNQNPCH 44
+Q CH
Sbjct: 1293 GSQTSCH 1299
>ref|XP_012701775.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Setaria italica]
Length = 1450
Score = 1171 bits (3030), Expect = 0.0
Identities = 634/1371 (46%), Positives = 881/1371 (64%), Gaps = 33/1371 (2%)
Frame = -3
Query: 4093 VPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGATNRKDCEG 3914
+P L + FDL+ D+EK S+++I + SD+ S +LGLPN SSQC TCG+ + +DC+G
Sbjct: 7 LPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCDG 66
Query: 3913 HFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKRLLLRMKF 3734
HFGV KL T+++P+ + EVVH LNQICP C +++
Sbjct: 67 HFGVTKLAATVHNPYFIDEVVHFLNQICPGCLNLRE------------------------ 102
Query: 3733 EKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAIKFK---- 3566
N+ +K L ER + CKYCS S + YP++ FK
Sbjct: 103 ----------------NIDLKTL-------ERETVRATCKYCSDGS-KLYPSVIFKTLSS 138
Query: 3565 ---ISSKDTRGR------KCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGK 3413
+ SK R + +I AE ++ K + E LP D+W+F VPS++ +
Sbjct: 139 PRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKGSLEGLPQDYWDF---VPSENQQ 195
Query: 3412 PESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFS 3233
+S ++KI LSP Q F +L++ DPE IK FV RREL+FLSC+P++PNC RVVE + S
Sbjct: 196 LQST-MTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLS 254
Query: 3232 DGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSV 3053
DG RL+FD AYK +VD S++ID++ QH QF A+ V++RV +CL SKL+S K+
Sbjct: 255 DG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKT- 312
Query: 3052 EDRPSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETL 2873
+ G+KW+K+ VLSKR+DN FR IM+GDPKI++ EIG+P++++ L
Sbjct: 313 --------DVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNL 364
Query: 2872 EIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDF 2693
++E V+ +N++ + L C+ HLL+K EL RR GKL+ + ++NQL+VGD YRPL++GD
Sbjct: 365 VVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDL 424
Query: 2692 ILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVE 2513
IL+NRPPSVHQHSL+ALS KILP++SV+SINPLCC P LGDFDGDCLHGY+PQS+R+R+E
Sbjct: 425 ILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIE 484
Query: 2512 LSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCES--Q 2339
L EL+S QL N QDGRSL+SLTHDSL AAHLL VFL + E+QQL+MLC S
Sbjct: 485 LGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQMLCLSVSTTP 544
Query: 2338 YPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSIS 2159
PAII + + WTG+Q FSML P ++ S S + I S G S+L QNS +
Sbjct: 545 VPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWL-QNSTT 603
Query: 2158 GILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCG 1979
G+ MFK YGRKAL++L SAQ+VLCEFLTMRGLSVSL D+Y+ SD Y+R+KL V+
Sbjct: 604 GLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLA 663
Query: 1978 LEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRPINLASIAKFKEFF 1799
L+EA+ + +++L+P +LK DET+D + + + ++ + +SI FK+ F
Sbjct: 664 LDEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQS--DYIQSNLSVVRSSIMSFKDVF 721
Query: 1798 RELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC-- 1625
+L ++ +++S +NS++ M+ AGSKGS+LK VQQ C+G QL A PF IP +LSC
Sbjct: 722 NDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPFRIPSQLSCVS 781
Query: 1624 ----------PEDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPG 1475
E + G+N YAVI SF++GLNPLEC HA+S R+N FS++A++PG
Sbjct: 782 WNRQKSLNCEAESTSEHVEGQNLYAVIRNSFIEGLNPLECLLHAISGRANFFSEHADVPG 841
Query: 1474 TLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNK 1295
TLTRK+M++LRD++ AYDGT+R++YGQ ++QFSY + +D CN
Sbjct: 842 TLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSY----------------DTADDMCCNH 885
Query: 1294 --LG--GQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXX 1127
+G G PVGS AACSISEAAYGALDHPVN LE SPL+NL++V +C A S D
Sbjct: 886 DLVGELGAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLL 945
Query: 1126 XXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHF 947
Y EYA+L VKNHL+RV+FSD+V ++MI Y D K K PW +HF
Sbjct: 946 FLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGCD----KTRKGGPWTTHF 1001
Query: 946 HLNKEWMIRKRINLPSVLDVLNRKYNLEREK-DRLLPRLFFTSKNCILDNGHKKLKEYCV 770
H++KE M +KR+ L V++ L ++Y+ R + + +P + + + C + + + C+
Sbjct: 1002 HISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNAIPSVHISKRKCSVGDQCVQNSACCI 1061
Query: 769 E-VAVEDCDSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQPDGQLFLKISMA 593
VA + +S LD I+ VIP +L LKGF++FK V+I Q + DG+L +K+ M+
Sbjct: 1062 TLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGELLVKVGMS 1117
Query: 592 KSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLAVSDI 413
+ C G+FW TL+NACIP+M+LIDWE+S P VYDI ++GI SA+ F+ SLK SDI
Sbjct: 1118 EHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVESLKSVTSDI 1177
Query: 412 GRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFIEAAK 233
GRN+ EHLL+V+DSLSVTG+F LS++GL QQR+ LSISSPF++ACFS P + FI AAK
Sbjct: 1178 GRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPARSFINAAK 1237
Query: 232 HGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTLLS 80
H SVD L G++DA+AWG+E GT GPF+I+++GK H +Q E+IY L S
Sbjct: 1238 HCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFLRS 1288
>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Nelumbo nucifera]
Length = 1373
Score = 1126 bits (2913), Expect = 0.0
Identities = 594/1249 (47%), Positives = 823/1249 (65%), Gaps = 47/1249 (3%)
Frame = -3
Query: 3619 CKYCSRNSGEWYPAIKFKISSKD-TRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNF 3443
CKYC+ +S EWYP +KFK++SKD ++ ++ EVNEK+PKKF N++L EVLP+D+W+
Sbjct: 9 CKYCAGSSKEWYPTMKFKVASKDLSKKNTSSVIVEVNEKLPKKFANKNLGEVLPTDYWDC 68
Query: 3442 IPMVPSQHGKPESIDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQ 3263
I P Q + + ++ +LSP Q + +L+ +D F+K FV R E IFLSC P++PNC
Sbjct: 69 IQKDPEQ--EESFLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEAIFLSCFPVTPNCH 126
Query: 3262 RVVETSHVFSDGPRLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLN 3083
R++E +H+ S+G +L+FD+ A K L+D+ R +E H V +CL+
Sbjct: 127 RIMELTHLSSNGHQLAFDERTKAMKKLIDSKRHANELSLH--------------VRNCLS 172
Query: 3082 VSKLHSNKSVEDRPSYSLSKNDN-PSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGE 2906
VSKLH++KS+ + L KND+ S+ GLKWIKE++L KRTD FRM +IGDPKI + E
Sbjct: 173 VSKLHTDKSL--KKDTVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKISLCE 230
Query: 2905 IGLPQDVSETLEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGD 2726
IG+P+ V+E L+I E +NVHN +KL FHL+ KG RRKGKL+ L +++L++GD
Sbjct: 231 IGVPRMVAENLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSELKLGD 290
Query: 2725 TFYRPLENGDFILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHG 2546
YR L++GD +L+NRPPSVHQHSL+ALSVK+LP+ SV+SINPLCC+PL GDFDGDCLHG
Sbjct: 291 IVYRHLDDGDIVLINRPPSVHQHSLMALSVKVLPINSVVSINPLCCSPLSGDFDGDCLHG 350
Query: 2545 YVPQSLRARVELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQL 2366
++ Q++ RVEL EL++ QL N Q+G++LLSL+HDSL+AAHL+ + VFL+ F+MQQL
Sbjct: 351 FIAQAIDCRVELRELVALSKQLVNGQNGQNLLSLSHDSLSAAHLVTQNGVFLDMFQMQQL 410
Query: 2365 EMLCTCESQYPAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGV 2186
+MLC + Q P I+ A + P WTG+QLF ML P + D S+ VKI G + S G
Sbjct: 411 KMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLCSFGE 470
Query: 2185 SFLSQNSISGILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRK 2006
S ++ I + Y +A+++LF+AQDV CE+++M G SVSL D+Y+ SD ++RK
Sbjct: 471 SSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRK 530
Query: 2005 KLIDEVRCGLEEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFARATRP---I 1835
++DEVRCGL+E K + +LM++P+M LL+ +D + + + + + + +
Sbjct: 531 NMLDEVRCGLQEIKKKIYIKQLMVDPEMVHLLR-YDGENTKTNGYRVDQECPSNQESVVL 589
Query: 1834 NLASIAKFKEFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVL 1655
S++ F+E F ++Q++IH Y S +NSLL M++AGSKG+LLK+VQQG+CLG Q ++ L
Sbjct: 590 CQVSVSSFREAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPL 649
Query: 1654 PFSIPDKLSCPEDGFDSSG-------GENSYAVIEASFLDGLNPLECFFHALSCRSNMFS 1496
F IP KLSC + S YAV+E SFLDGLNPLECF H++S R N F
Sbjct: 650 SFQIPCKLSCASWNYQKSHDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFG 709
Query: 1495 DNAELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSE 1316
+NA+LPGTLTRK+MFY+RD+Y AYDGT+R AYG QL+QFSYG K +S +D
Sbjct: 710 ENADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSVQD--PCGLFGG 767
Query: 1315 EDSECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRT 1136
+ + +GGQPVGSL+ACSISEAAY ALD P++ LE SPLLNLKKVLEC S D+T
Sbjct: 768 SPNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQT 827
Query: 1135 AXXXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWI 956
A GFEY A VKNHL+RV FSDVV++VM+ ++ + + SPW+
Sbjct: 828 ASLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFS---PQRHSQMSASPWV 884
Query: 955 SHFHLNKEWMIRKRINLPSVLDVLNR-------KYNLE------REKDRL--------LP 839
HFH+ KE M R+ +N+ S++D L R K NL R+K +L LP
Sbjct: 885 CHFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIKLP 944
Query: 838 RLFFTSKNCILDNGHKKLKEYCVEVAVE-DCDSPFLLDVIRDSVIPILLCITLKGFMDFK 662
L S++C + + + +C+ V VE DS LD +RD V+P L +KGF++FK
Sbjct: 945 NLMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQLDTVRDLVVPFLSRTVIKGFLEFK 1004
Query: 661 QVDILWDSQSQ-------PDGQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHP 503
VDILW+ Q G+L+LK+ M++ C KFW +L+NAC+P+MDLIDWERS+P
Sbjct: 1005 SVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMDLIDWERSYP 1064
Query: 502 DGVYDISDAFGITSAYSYFLGSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGL 323
D +Y+I A+GI + + YFL SLK A+SDIG+ + EHLLLV++SLS TGEF GLSAKG+
Sbjct: 1065 DNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGEFLGLSAKGI 1124
Query: 322 KQQRAHLSISSPFTQACFSNPEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKI 143
K+Q S+SSPF QACFSNP CFI+AAK G+VD L G +D+V+WG++ P+GTGG F I
Sbjct: 1125 KRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVPIGTGGHFDI 1184
Query: 142 IYSGKVHNQKQTENIYGTLL--SLKHDRSNQ----NPCHINCDKWKGQS 14
+YSGK + NIY L S H + + + C C KW+ QS
Sbjct: 1185 LYSGKGFTPAKPTNIYSALCHESKSHGENVETGLTDACRKVCCKWEKQS 1233
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 1124 bits (2906), Expect = 0.0
Identities = 611/1399 (43%), Positives = 865/1399 (61%), Gaps = 37/1399 (2%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
M ND+ + +P+ + G++F++ N D EK S + I S++ +LG PN S+ CTTC
Sbjct: 4 MENDLYEAEQLPAAFVTGIRFNVSNDRDNEKMSVMEIAAPSEVSDPKLGFPNFSNHCTTC 63
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFT 3764
GA + K CEGHFGVI P I HP+ + EVV ILN+ICP CK + RKDLRIK
Sbjct: 64 GAADMKHCEGHFGVINFPYAILHPYFLSEVVQILNKICPGCKSV----RKDLRIK----- 114
Query: 3763 LKRLLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWY 3584
+V + GCKYC NS +WY
Sbjct: 115 -----------------------------------GANSVSKVNQRKGCKYCVGNSIDWY 139
Query: 3583 PAIKFKISSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPES 3404
P + FKISSKD RK I EV+EK K R + LPSD+W+FIP Q +
Sbjct: 140 PPMNFKISSKDLF-RKSAIIVEVSEKSSMKVRKRG-KQALPSDYWDFIPKDEQQ--EESL 195
Query: 3403 IDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGP 3224
I ++ LS +Q ++L+++DPEFIK FV + IFL+C P++PN RV E H S+G
Sbjct: 196 IRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNSHRVTEIMHASSNGQ 255
Query: 3223 RLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVEDR 3044
RL FD+ YK L D +E H V +CL +SKLH K +
Sbjct: 256 RLIFDQRTRVYKKLADFRGIANELSSH--------------VLECLKISKLHLEKPSNEE 301
Query: 3043 PSYSLSKNDNP----SITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSET 2876
+ L++ N +++GL+++K+V+L KR D+ FRM++ G+P +++ EI +P V+E
Sbjct: 302 SALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEISIPCHVAER 361
Query: 2875 LEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGD 2696
L+IAEQ+N N ++LK CD LL KGE+H RR+G+L+ + + +LQVGDT +RPL NGD
Sbjct: 362 LQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGD 421
Query: 2695 FILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARV 2516
IL+NRPPS+HQHSL+ALSVK+LPV SV+SINPL C+P GDFDGDCLHGYVPQS++ARV
Sbjct: 422 IILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARV 481
Query: 2515 ELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQY 2336
EL EL+S + QL N Q GR+LLSL+HDSLTAA+L+ E V LN F+MQQLEM C S +
Sbjct: 482 ELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPF 541
Query: 2335 PAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISG 2156
PAI+ A + WTG+QL SMLFPL D V I G + S S +++
Sbjct: 542 PAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGN 601
Query: 2155 ILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGL 1976
+ + K Y K L++L++AQ+VLCE+L+MRGLSVSL D+YL+SD ++K ++DE+ CGL
Sbjct: 602 LFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSDSNSQKNMMDEIFCGL 661
Query: 1975 EEAKASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKFA---RATRPINLASIAKFKE 1805
+E + +C+F +LM++ + FL+ DE DS ++++ + + + ++ AS+ FK+
Sbjct: 662 QEIEQTCNFKQLMVDSNHDFLV-GHDEEVDSFMALDVEQMCYEKQRSAALSQASVDSFKQ 720
Query: 1804 FFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC 1625
FR++QN+++ Y +++NSLLTM +AGSKG+LLKLVQ +CLG Q S L F P +LSC
Sbjct: 721 VFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSC 780
Query: 1624 P--------------EDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNA 1487
+D +S+ YAV+E+SF+ GLNPLE F H+++ R + FSDNA
Sbjct: 781 AAWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSSFSDNA 840
Query: 1486 ELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDS 1307
+LPGTL+R++MF++RD+YTAYDGT+RN+YG ++QF Y KD S SE +
Sbjct: 841 DLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLISESST 900
Query: 1306 ECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXX 1127
+GGQPVGSL+AC+ISEAAY ALD PV+ LE+SPLLNLK+V+EC R++ D+T
Sbjct: 901 IPEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTL 960
Query: 1126 XXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHF 947
+G EYAAL VKNHL+R++FSD+VT+V I ++ E +PW+ HF
Sbjct: 961 FLSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSIIFSPQMYREN---HFTPWVCHF 1017
Query: 946 HLNKEWMIRKRINLPSVLDVLNRKYNLEREKDRL-LPRLFFTS--KNCILDNGHKKLKEY 776
H+ K+ M R+++ + S++D L+ + ++ LP + TS + C + + +
Sbjct: 1018 HVCKDTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDMQITSNGRACSHIDMPNEDDTF 1077
Query: 775 CVEVAVEDC--DSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILWDSQ---SQPD---- 623
C+ V + + S LDVIRD VIP LL +KGF + K+VDILW + S+P
Sbjct: 1078 CITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSC 1137
Query: 622 GQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFL 443
G+L+L++ ++ K W L N C+ IMD+IDW RSHPD + + A+GI + + +FL
Sbjct: 1138 GELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFL 1197
Query: 442 GSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSN 263
+LK A+SD G+ I EHLL+V++ LS TGEF GL++KGL+QQR H +SSPF QACFSN
Sbjct: 1198 NNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSN 1257
Query: 262 PEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIY---- 95
P F++AAK G+ D L GT+DA+AWG+ +GTGG F IIYS K + ++Y
Sbjct: 1258 PSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLG 1317
Query: 94 GTLLSLKHDRSNQNPCHIN 38
++ S K D + P +N
Sbjct: 1318 SSISSQKQDVEFEVPKALN 1336
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 1122 bits (2901), Expect = 0.0
Identities = 592/1219 (48%), Positives = 800/1219 (65%), Gaps = 30/1219 (2%)
Frame = -3
Query: 3652 KKWERVEHQPGCKYCSRNSGEWYPAIKFKI--SSKDTRGR-----------KCTITAEVN 3512
K+ + + Q CKYCS++ + YP+I FK+ S + T R K +I AEV
Sbjct: 30 KRADGITIQATCKYCSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVIDKMSIIAEVA 89
Query: 3511 EKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPESIDISKINLSPAQAFFILRELDPEF 3332
+V N++ E LP DFW+FIP +P +++K LSP Q F +L++LDPE
Sbjct: 90 SRVTHNSKNKA-PETLPHDFWDFIP----DENQPSQSNVTKKILSPYQVFHMLKKLDPEL 144
Query: 3331 IKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGPRLSFDKCNNAYKGLVDTSRKIDEF 3152
I PRREL+FLSC+P++PNC RV E + SDGPRL+FD AYK +VD SR+ID++
Sbjct: 145 ISHVTPRRELLFLSCLPVTPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDY 204
Query: 3151 HQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVEDRPSYSLSKNDNPSITGLKWIKEVVL 2972
QH QFG A+ V +RV +C+ SKL++ KS + + + G KW+K+++L
Sbjct: 205 RQHPQFGVFASSVVTSRVMECMKSSKLYAKKSDGE-------SSTSTDTYGTKWLKDIIL 257
Query: 2971 SKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETLEIAEQVNVHNVDKLKLTCDFHLLSKGE 2792
SKR+DN FR IM+GDPKI + EIG+P D++ L ++EQV+ +N + + L C+ HLL+K
Sbjct: 258 SKRSDNAFRSIMVGDPKISLNEIGIPMDLALNLVVSEQVSYYNFETINLKCNLHLLTKEV 317
Query: 2791 LHARRKGKLILLHRSNQLQVGDTFYRPLENGDFILVNRPPSVHQHSLLALSVKILPVKSV 2612
L RR GKLI + ++N+LQ+GD YR L++GD +LVNRPPSVHQHSL+ALS K+LPV S
Sbjct: 318 LLVRRNGKLIFVRKANKLQIGDIAYRLLQDGDLVLVNRPPSVHQHSLVALSAKLLPVHSA 377
Query: 2611 ISINPLCCAPLLGDFDGDCLHGYVPQSLRARVELSELLSFDHQLFNAQDGRSLLSLTHDS 2432
+SINPLCC P GDFDGDCLHGYVPQS+++RVEL EL+ + QL NAQDGRSL+SLTHDS
Sbjct: 378 VSINPLCCDPFKGDFDGDCLHGYVPQSIQSRVELEELVGLNRQLLNAQDGRSLVSLTHDS 437
Query: 2431 LTAAHLLMEGAVFLNKFEMQQLEMLCTCESQ--YPAIINASDIHRPRWTGQQLFSMLFPL 2258
L AAH L + L K E QQL+MLC+ S P++I +++ P WTG+QLF +L P
Sbjct: 438 LAAAHQLTSADILLQKAEFQQLQMLCSSISSTPMPSVIKSANSQGPLWTGKQLFGLLLPS 497
Query: 2257 NIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISGILYGMFKCYGRKALNYLFSAQDVLCE 2078
++ S + I + + S QN+ S + MFK YGRKAL +L S QDVLCE
Sbjct: 498 GMNISFDQNL-HIKDSEVLTCSSGSLWLQNNTSSLFSVMFKEYGRKALQFLSSTQDVLCE 556
Query: 2077 FLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGLEEAKASCHFNELMLEPDMGFLLKTFD 1898
FLT+RGLSVSL D+YL SD Y+R+KL +EV L+EA+ + +++L P LK +D
Sbjct: 557 FLTIRGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNPVSIPNLKYYD 616
Query: 1897 ETDDSLHSMNIPKFARATRPINLASIAKFKEFFRELQNVIHYYISRENSLLTMVQAGSKG 1718
DD +S F +A+ I +SI FK F +L ++ +++S++NS++ M+ +GSKG
Sbjct: 617 GADDLSNSYGQSDFTQASPSIIKSSITSFKSIFNDLLKMVQHHVSKDNSMMAMINSGSKG 676
Query: 1717 SLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC-------------PEDGFDSSGGENSYAV 1577
S+ K VQQ C+G QL A PF IP LSC + +S GG++ YAV
Sbjct: 677 SIPKFVQQTACVGLQLPASKFPFKIPSILSCVSWNRHKSLDYEITDYTIESMGGQSMYAV 736
Query: 1576 IEASFLDGLNPLECFFHALSCRSNMFSDNAELPGTLTRKIMFYLRDIYTAYDGTIRNAYG 1397
I SFLDGLNPLEC HA+S R+N FS+NA++PGTLTRK+M++LRD Y AYDGT+R++YG
Sbjct: 737 IRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYIAYDGTVRSSYG 796
Query: 1396 QQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNKLGGQPVGSLAACSISEAAYGALDHPV 1217
QQ++QFSY D SD + E G PVGS AACSISEAAYGALDHPV
Sbjct: 797 QQIVQFSY----DTSDGMYIEHDIEGEP--------GTPVGSWAACSISEAAYGALDHPV 844
Query: 1216 NSLESSPLLNLKKVLECAPARTSVDRTAXXXXXXXXXXXNYGFEYAALAVKNHLDRVSFS 1037
N LE SPL+NL++VL+C SVD T YGFEYA+L VK+HL+RV FS
Sbjct: 845 NGLEDSPLMNLQEVLKCHKGTNSVDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFS 904
Query: 1036 DVVTSVMIFYATHDAEETKGIKLSPWISHFHLNKEWMIRKRINLPSVLDVLNRKYN-LER 860
D+V +VMI Y D +++KG +PW++HFHLN+E M KR+ L V+ L +YN L +
Sbjct: 905 DLVDTVMILYGGSDIQKSKG---NPWVTHFHLNQEAMKIKRLGLGYVVRELIDQYNALRK 961
Query: 859 EKDRLLPRLFFTSKNCILDNGHKKLKEYCVEVAVE-DCDSPFLLDVIRDSVIPILLCITL 683
+ + +P + S C + NG K + CV + V+ + +S L +I++ VIP +L L
Sbjct: 962 QLNNTIPSVCILSSKCSVGNGCVKNQACCVTMVVQVESNSTSQLTIIKERVIPSILATLL 1021
Query: 682 KGFMDFKQVDILWDSQSQPDGQLFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHP 503
KGF++FK V + Q Q D +L +++ M++ C GKFW TL+NACIPIM+LIDWERS P
Sbjct: 1022 KGFLEFKNVKV----QCQQDSELVVRVDMSEHCKSGKFWATLQNACIPIMELIDWERSRP 1077
Query: 502 DGVYDISDAFGITSAYSYFLGSLKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGL 323
+ +YD+ ++GI SA+ +F+ SL+ IGRNI +HLL+V+D LSV+G+FHGLS++GL
Sbjct: 1078 ERLYDVFCSYGIDSAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGL 1137
Query: 322 KQQRAHLSISSPFTQACFSNPEKCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKI 143
KQQR LSISSPF++ACFS P FI AAK SVD L GT+DA+AWG+E GT GPFKI
Sbjct: 1138 KQQRTSLSISSPFSEACFSRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKI 1197
Query: 142 IYSGKVHNQKQTENIYGTL 86
+YSGK H KQ ENIY L
Sbjct: 1198 LYSGKSHETKQKENIYNFL 1216
>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Cucumis sativus] gi|778675671|ref|XP_011650448.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Cucumis sativus]
gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
gi|700200830|gb|KGN55963.1| hypothetical protein
Csa_3G039340 [Cucumis sativus]
Length = 1483
Score = 1106 bits (2860), Expect = 0.0
Identities = 603/1367 (44%), Positives = 853/1367 (62%), Gaps = 28/1367 (2%)
Frame = -3
Query: 4102 EQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGATNRKD 3923
E +PSG L G+ F + N DIE + + ++ A+++ +LGLPN S QCTTCGA++ K
Sbjct: 24 ELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKF 83
Query: 3922 CEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKRLLLR 3743
CEGHFGVIK P TI HP+ + EV +LN++CP CK +++E L
Sbjct: 84 CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQE------------------LW 125
Query: 3742 MKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAIKFKI 3563
K E NR GC+YC + +WYP ++FK+
Sbjct: 126 GKVEDPTSDYNRP--------------------------KGCRYCFGSLKDWYPPMRFKL 159
Query: 3562 SSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPESIDISKIN 3383
S+ D +K I EV E + KK+ R LPSD+W+FIP Q + ++
Sbjct: 160 STTDMF-KKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQ--EESYCRPNRKI 216
Query: 3382 LSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGPRLSFDKC 3203
L+ AQ ++L+++DP+F+K FVP + +FL+ P++PN RV E +H FS+G RL FD+
Sbjct: 217 LTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDER 276
Query: 3202 NNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNKSVEDRPSYSLSK 3023
AYK +VD +E + +RV DCL +SKL K Y K
Sbjct: 277 TRAYKKVVDFRGTANE--------------LGSRVLDCLKISKLSPEKLQNKDLVYQQKK 322
Query: 3022 --NDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETLEIAEQVNV 2849
+ S +GL+WIK+VVL KR+D+ FRM+++GDP I++ EIG+P V+E L+I+E ++
Sbjct: 323 IKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSS 382
Query: 2848 HNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDFILVNRPPS 2669
N+ KL +C HL+ KGE++ RR+G+L+ + +L +GDT YRPL +GD +LVNRPPS
Sbjct: 383 WNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPS 442
Query: 2668 VHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVELSELLSFD 2489
+HQHSL+ALSVK+LPV +V+S+NPLCC+P GDFDGDCLHGYVPQSL ARVE+ EL+S D
Sbjct: 443 IHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLD 502
Query: 2488 HQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQYPAIINASDI 2309
QL N Q GR+LLSL+HDSLTAAHL++E V LN F+MQQL+ML + PAI+ + +
Sbjct: 503 KQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLL 562
Query: 2308 HRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISGILYGMFKCY 2129
WTG+QLFS+L P + D S+ S V I +G + S G S+ ++S + + +
Sbjct: 563 RNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEG-SYWLRDSGRNLFQALIEHC 621
Query: 2128 GRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGLEEAKASCHF 1949
K L+YL AQ VLCE+L+ RGLSVSL D+YL+ D Y+ + ++D++ CGL+EA+ +C+
Sbjct: 622 EGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNL 681
Query: 1948 NELMLEPDMGFLLKTFDETDDSLHSMNIPKF---ARATRPINLASIAKFKEFFRELQNVI 1778
+LM++ L+ DE + L S+ + + + + +N AS+ FK+ FR++QN++
Sbjct: 682 KQLMVDSHKEILIGN-DEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQNLV 740
Query: 1777 HYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC--------- 1625
+ Y ++NSLLTM +AGSKG+L+KLVQ +CLG Q S L FS+P KLSC
Sbjct: 741 YKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQKMP 800
Query: 1624 ---PEDGF-DSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPGTLTRKI 1457
+DG D + YAV+E SFL GLNP ECF H+++ R + FSDNAE+PGTLTRK+
Sbjct: 801 RYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKL 860
Query: 1456 MFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNKLGGQPV 1277
F +RDIYTAYDGT+RNAYG QL+QF Y D D S+ SE ++ +GG PV
Sbjct: 861 TFLMRDIYTAYDGTVRNAYGNQLVQFCY-------DIDRPTSESESENNNRDRGIGGHPV 913
Query: 1276 GSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXXXXXXXXXN 1097
GSLAAC+ISEAAY ALD P++ LE+SPLLNLK+VLEC R S +T +
Sbjct: 914 GSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRS 973
Query: 1096 YGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHLNKEWMIRK 917
YGFEY AL VKNHL+RV F D+V+SVMI ++ + + SPW+ HFH+ KE + ++
Sbjct: 974 YGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKK---HFSPWVCHFHVCKEILKKR 1030
Query: 916 RINLPSVLDVLNRKYNLEREKDRL-LPRLFFTSKNC-ILDNGHKKLKEYCVEVAV-EDCD 746
R+ + SV+ LN + + R++ R+ LP L +++C + D+ + C+ V + E+
Sbjct: 1031 RLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTK 1090
Query: 745 SPFL-LDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQ------PDGQLFLKISMAKS 587
+ FL LD I+D +I LL ++GF + +VDI W+ + + G+L+L+++M+
Sbjct: 1091 NSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSGE 1150
Query: 586 CSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLKLAVSDIGR 407
+FW TL N C+PIMDLIDW RSHPD + + A+GI S + YFL SL+ A D+G+
Sbjct: 1151 -GNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGK 1209
Query: 406 NIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKCFIEAAKHG 227
I EHLLLVS+SLS TGEF GL+ KGL QR H + +PF QACFS+P C I+AAK G
Sbjct: 1210 TIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAG 1269
Query: 226 SVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTL 86
D L G++DA+AWG+ +GTGG F I+YSGK H + ++Y L
Sbjct: 1270 IKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLL 1316
>ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Cucumis melo]
Length = 1489
Score = 1106 bits (2860), Expect = 0.0
Identities = 608/1375 (44%), Positives = 858/1375 (62%), Gaps = 36/1375 (2%)
Frame = -3
Query: 4102 EQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTCGATNRKD 3923
E +PSG+L G+ F + N DIE + + ++ AS++ +LGLPN S QCTTCGA++ K
Sbjct: 24 ELPIPSGRLTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQCTTCGASSLKF 83
Query: 3922 CEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFTLKRLLLR 3743
CEGHFGVIK P TI HP+ + EV +LN++CP CK I++E L
Sbjct: 84 CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQE------------------LW 125
Query: 3742 MKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWYPAIKFKI 3563
K E NR GC+YC + +WYP ++FK+
Sbjct: 126 GKVEDPTSDYNRP--------------------------KGCRYCFGSLKDWYPPMRFKL 159
Query: 3562 SSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPESIDISKIN 3383
S+ D +K I EV E + KK+ R LPSD+W+FIP Q + ++
Sbjct: 160 STTDMF-KKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQ--EESYCRPNRKI 216
Query: 3382 LSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGPRLSFDKC 3203
L+ AQ ++L+++DP+F+K FVP + +FL+ P++PN RV E +H FS+G RL FD+
Sbjct: 217 LTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDER 276
Query: 3202 NNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSK----LHSNKSVEDR--- 3044
AYK +VD +E + +RV DCL +SK + + + R
Sbjct: 277 TRAYKKVVDFRGTANE--------------LGSRVLDCLKISKAIYKIFPREVTKXRFGL 322
Query: 3043 PSYSLSKNDNPSITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSETLEIA 2864
P+ + K+ S +GL+WIK+VVL KR+D+ FRM+++GDP I++ EIG+P V+E L+I+
Sbjct: 323 PAKKI-KDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQIS 381
Query: 2863 EQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGDFILV 2684
E ++ N+ KL +C HL+ KGE++ RR+G+L+ + +L +GDT YRPL +GD +LV
Sbjct: 382 EHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLV 441
Query: 2683 NRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARVELSE 2504
NRPPS+HQHSL+ALSVK+LPV +V+S+NPLCC+P GDFDGDCLHGYVPQSL ARVE+ E
Sbjct: 442 NRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRE 501
Query: 2503 LLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQYPAII 2324
L+S D QL N Q GR+LLSL+HDSLTAAHL++E V LN F+MQQL+ML + PAI+
Sbjct: 502 LVSLDRQLINGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIV 561
Query: 2323 NASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISGILYG 2144
+ + WTG+QLFS+L P + + S+ S V I +G + S G S+ ++S +
Sbjct: 562 KSPLLRNCAWTGKQLFSILLPPDFEYSSPSHNVFIEKGELISSEG-SYWLRDSGRNLFQA 620
Query: 2143 MFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGLEEAK 1964
+ + K L+YL AQ VLCE+L+MRGLSVSL D+YL+ D Y+ K ++D++ CGL+EA+
Sbjct: 621 LIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAE 680
Query: 1963 ASCHFNELMLEPDMGFLLKTFDETDDSLHSMNIPKF---ARATRPINLASIAKFKEFFRE 1793
+C+ +LM++ L DE + L S+ + + + +N AS+ FK+ FR+
Sbjct: 681 ETCNLKQLMVDSHKEILTGN-DEDNQHLLSIAVEHLIYEKQKSAALNQASVDAFKKVFRD 739
Query: 1792 LQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLSC---- 1625
+QN++H Y ++NSLLTM +AGSKG+L+KLVQ +CLG Q S L FS+P KLSC
Sbjct: 740 IQNLVHKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCSAWN 799
Query: 1624 --------PEDGF-DSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDNAELPGT 1472
EDG D + YAV+E SFL GLNP ECF H+++ R + FSDNAE+PGT
Sbjct: 800 SQKMPRYIQEDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT 859
Query: 1471 LTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEEDSECNK- 1295
LTRK+ F +RDIYTAYDGT+RNAYG QL+QF Y + S SSE DSE N+
Sbjct: 860 LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS--------VSSESDSENNRD 911
Query: 1294 --LGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAXXXX 1121
+GG PVGSLAAC+ SEAAY ALD P++ LE+SPLLNLK+VLEC R S +T
Sbjct: 912 RDIGGHPVGSLAACAFSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFL 971
Query: 1120 XXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISHFHL 941
+YGFEY AL VKNHL+RV F D+V+SVMI ++ + + SPW+ HFH+
Sbjct: 972 SEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPQPSRKK---HFSPWVCHFHV 1028
Query: 940 NKEWMIRKRINLPSVLDVLNRKYNLEREKDRL-LPRLFFTSKNC-ILDNGHKKLKEYCVE 767
K+ + ++R+ + SV+ LN + + R++ R+ LP L +++C + D+ + C+
Sbjct: 1029 CKDILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLT 1088
Query: 766 VAV-EDCDSPFL-LDVIRDSVIPILLCITLKGFMDFKQVDILWDSQSQ------PDGQLF 611
V + E+ + FL LD I+D +I LL ++GF + +VDI W+ + + G+L+
Sbjct: 1089 VTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDITWNDRPKVPKPRCSHGELY 1148
Query: 610 LKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGSLK 431
L+++M+ +FW TL N C+PIMDLIDW RSHPD + + A+GI S + YFL SL+
Sbjct: 1149 LRVTMSGE-GNSRFWATLINNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLE 1207
Query: 430 LAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPEKC 251
A DIG+ I EHLLLV++SLS TGEF GL+ KGL QR H + +PF QACFS+P C
Sbjct: 1208 CATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGAC 1267
Query: 250 FIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTL 86
I+AAK G D L G++DA+AWG+ +GTGG F I+YSGK H + ++Y L
Sbjct: 1268 LIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLL 1322
>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
Length = 1478
Score = 1094 bits (2830), Expect = 0.0
Identities = 602/1377 (43%), Positives = 839/1377 (60%), Gaps = 31/1377 (2%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
M +D EQ + L G+KF + N D E S + I S++ RLG PN S+ CTTC
Sbjct: 1 MESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCTTC 60
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFT 3764
A + K CEGHFGVIK P TI HP + EVVHILN+ICP CK I RKDL +K
Sbjct: 61 DARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSI----RKDLWMK----- 111
Query: 3763 LKRLLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWY 3584
R+ GCKYC NS EWY
Sbjct: 112 -----------------------------------GANSIARLLETKGCKYCVGNSIEWY 136
Query: 3583 PAIKFKISSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPES 3404
P ++FKI+SK+ RK I EV+E K R + LP+D+W+FIP Q +
Sbjct: 137 PPMRFKITSKELF-RKSAIMVEVSENSLMKVRKRG-RQALPADYWDFIPK--DQQQEEGF 192
Query: 3403 IDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGP 3224
+ + LS AQ +L++++PEFIK F+ + IFL+ P++PN RV E H S+
Sbjct: 193 VKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQ 252
Query: 3223 RLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNK-SVED 3047
RL FD+ YK LVD +E H V +CL +SKLH K S ED
Sbjct: 253 RLIFDERTRVYKKLVDFRGLANELSSH--------------VLECLKISKLHVEKPSTED 298
Query: 3046 RPSYSLSKNDNPS---ITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSET 2876
+ K + S ++GL+++K+V+L KR D+ FRM++ G+P +++ EIG+P V+E
Sbjct: 299 SALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEK 358
Query: 2875 LEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGD 2696
L+IAEQ+N N ++LK C+ +L KGE+ RR+GKL+ + + ++QVGDT YRPL +GD
Sbjct: 359 LQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGD 418
Query: 2695 FILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARV 2516
+L+NRPPS+HQHSL+ALSVK+LPV SV+SINPL C+P GDFDGDCLHGYVPQS+ RV
Sbjct: 419 TVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRV 478
Query: 2515 ELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQY 2336
ELSEL+S D QL N Q GR+LLSL+HDSLTAA+L+ E V LN F+MQQLEM C S
Sbjct: 479 ELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPL 538
Query: 2335 PAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISG 2156
PAI+ A + P WTG+QLFSMLFP D + V I G+ + S S +++
Sbjct: 539 PAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGN 598
Query: 2155 ILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGL 1976
+ + K Y K L++L +AQ+VLCE+L+MRGLSVSL D+YL+ D ++K ++DE+ GL
Sbjct: 599 LFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGL 658
Query: 1975 EEAKASCHFNELMLEPDMGFLLKTFDETDD----SLHSMNIPKFARATRPINLASIAKFK 1808
+EA+ +C+F +LM++ FL +ET+ + M K + + ++ AS+ FK
Sbjct: 659 QEAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEK--QRSAALSQASVDSFK 716
Query: 1807 EFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLS 1628
+ FR++QN+++ Y +++NSL TM +AGSKG+LLKLVQ +CLG Q S L F P +LS
Sbjct: 717 QVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLS 776
Query: 1627 CP--------------EDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDN 1490
C +D +S+ YAV+E+SF+ GLNPLECF H+++ R FSDN
Sbjct: 777 CAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDN 836
Query: 1489 AELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEED 1310
A+LPGTL+R++MF++RD+ AYDGT+RNAYG Q++QF Y K + S+
Sbjct: 837 ADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGS 896
Query: 1309 SECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAX 1130
S + +GGQPVGSL+AC+ISEAAY ALD P++ LESSPLLNLK+VLEC R++ D+T
Sbjct: 897 SLPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMS 956
Query: 1129 XXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISH 950
+G EY AL VKNHL+R+ F D+V++V I ++ + E + SPW+ H
Sbjct: 957 LFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSEN---RFSPWVCH 1013
Query: 949 FHLNKEWMIRKRINLPSVLDVLNRK-YNLEREKDRLLPRLFFTSKNCILDNGHKKLKEYC 773
FH+ K+ + R+R+ + S++D L+ N +R LP + TSK C + + + +C
Sbjct: 1014 FHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDTFC 1073
Query: 772 VEVAVEDC-DSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILW-------DSQSQPDGQ 617
+ V + +C S LDVI+D VIP LL +KGF + K+V+ILW +S G+
Sbjct: 1074 ITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGE 1133
Query: 616 LFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGS 437
L+L++S++ K W L N C+ +MD+IDW RSHPD + AFGI + + +FL +
Sbjct: 1134 LYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNN 1193
Query: 436 LKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPE 257
+K A+SD G++I EHL L ++ LS TGEF GL++KGLKQQR H +SSPF QACFSNP
Sbjct: 1194 MKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPS 1253
Query: 256 KCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTL 86
CF++AAK G D L GT+D +AWG+ +GTGG F I+YS K + ++Y L
Sbjct: 1254 ACFVKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLL 1310
>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X1 [Gossypium raimondii]
gi|763758424|gb|KJB25755.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
gi|763758426|gb|KJB25757.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
Length = 1481
Score = 1094 bits (2830), Expect = 0.0
Identities = 602/1377 (43%), Positives = 839/1377 (60%), Gaps = 31/1377 (2%)
Frame = -3
Query: 4123 MANDIITEQMVPSGQLLGMKFDLLNGDDIEKFSTVNINDASDLESVRLGLPNASSQCTTC 3944
M +D EQ + L G+KF + N D E S + I S++ RLG PN S+ CTTC
Sbjct: 4 MESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCTTC 63
Query: 3943 GATNRKDCEGHFGVIKLPTTIYHPHLVHEVVHILNQICPACKLIKKETRKDLRIKKKIFT 3764
A + K CEGHFGVIK P TI HP + EVVHILN+ICP CK I RKDL +K
Sbjct: 64 DARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSI----RKDLWMK----- 114
Query: 3763 LKRLLLRMKFEKLKLPQNRSLLSRVTNVHIKQLKFSGKKWERVEHQPGCKYCSRNSGEWY 3584
R+ GCKYC NS EWY
Sbjct: 115 -----------------------------------GANSIARLLETKGCKYCVGNSIEWY 139
Query: 3583 PAIKFKISSKDTRGRKCTITAEVNEKVPKKFGNRSLSEVLPSDFWNFIPMVPSQHGKPES 3404
P ++FKI+SK+ RK I EV+E K R + LP+D+W+FIP Q +
Sbjct: 140 PPMRFKITSKELF-RKSAIMVEVSENSLMKVRKRG-RQALPADYWDFIPK--DQQQEEGF 195
Query: 3403 IDISKINLSPAQAFFILRELDPEFIKLFVPRRELIFLSCIPLSPNCQRVVETSHVFSDGP 3224
+ + LS AQ +L++++PEFIK F+ + IFL+ P++PN RV E H S+
Sbjct: 196 VKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQ 255
Query: 3223 RLSFDKCNNAYKGLVDTSRKIDEFHQHQQFGFEAALDVATRVHDCLNVSKLHSNK-SVED 3047
RL FD+ YK LVD +E H V +CL +SKLH K S ED
Sbjct: 256 RLIFDERTRVYKKLVDFRGLANELSSH--------------VLECLKISKLHVEKPSTED 301
Query: 3046 RPSYSLSKNDNPS---ITGLKWIKEVVLSKRTDNTFRMIMIGDPKIQMGEIGLPQDVSET 2876
+ K + S ++GL+++K+V+L KR D+ FRM++ G+P +++ EIG+P V+E
Sbjct: 302 SALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEK 361
Query: 2875 LEIAEQVNVHNVDKLKLTCDFHLLSKGELHARRKGKLILLHRSNQLQVGDTFYRPLENGD 2696
L+IAEQ+N N ++LK C+ +L KGE+ RR+GKL+ + + ++QVGDT YRPL +GD
Sbjct: 362 LQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGD 421
Query: 2695 FILVNRPPSVHQHSLLALSVKILPVKSVISINPLCCAPLLGDFDGDCLHGYVPQSLRARV 2516
+L+NRPPS+HQHSL+ALSVK+LPV SV+SINPL C+P GDFDGDCLHGYVPQS+ RV
Sbjct: 422 TVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRV 481
Query: 2515 ELSELLSFDHQLFNAQDGRSLLSLTHDSLTAAHLLMEGAVFLNKFEMQQLEMLCTCESQY 2336
ELSEL+S D QL N Q GR+LLSL+HDSLTAA+L+ E V LN F+MQQLEM C S
Sbjct: 482 ELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPL 541
Query: 2335 PAIINASDIHRPRWTGQQLFSMLFPLNIDSSAGSTIVKIGEGNTVHSHGVSFLSQNSISG 2156
PAI+ A + P WTG+QLFSMLFP D + V I G+ + S S +++
Sbjct: 542 PAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGN 601
Query: 2155 ILYGMFKCYGRKALNYLFSAQDVLCEFLTMRGLSVSLGDVYLTSDPYTRKKLIDEVRCGL 1976
+ + K Y K L++L +AQ+VLCE+L+MRGLSVSL D+YL+ D ++K ++DE+ GL
Sbjct: 602 LFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGL 661
Query: 1975 EEAKASCHFNELMLEPDMGFLLKTFDETDD----SLHSMNIPKFARATRPINLASIAKFK 1808
+EA+ +C+F +LM++ FL +ET+ + M K + + ++ AS+ FK
Sbjct: 662 QEAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEK--QRSAALSQASVDSFK 719
Query: 1807 EFFRELQNVIHYYISRENSLLTMVQAGSKGSLLKLVQQGVCLGFQLSAKVLPFSIPDKLS 1628
+ FR++QN+++ Y +++NSL TM +AGSKG+LLKLVQ +CLG Q S L F P +LS
Sbjct: 720 QVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLS 779
Query: 1627 CP--------------EDGFDSSGGENSYAVIEASFLDGLNPLECFFHALSCRSNMFSDN 1490
C +D +S+ YAV+E+SF+ GLNPLECF H+++ R FSDN
Sbjct: 780 CAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDN 839
Query: 1489 AELPGTLTRKIMFYLRDIYTAYDGTIRNAYGQQLIQFSYGSPKDESDKDFEHSQFSSEED 1310
A+LPGTL+R++MF++RD+ AYDGT+RNAYG Q++QF Y K + S+
Sbjct: 840 ADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGS 899
Query: 1309 SECNKLGGQPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPARTSVDRTAX 1130
S + +GGQPVGSL+AC+ISEAAY ALD P++ LESSPLLNLK+VLEC R++ D+T
Sbjct: 900 SLPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMS 959
Query: 1129 XXXXXXXXXXNYGFEYAALAVKNHLDRVSFSDVVTSVMIFYATHDAEETKGIKLSPWISH 950
+G EY AL VKNHL+R+ F D+V++V I ++ + E + SPW+ H
Sbjct: 960 LFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSEN---RFSPWVCH 1016
Query: 949 FHLNKEWMIRKRINLPSVLDVLNRK-YNLEREKDRLLPRLFFTSKNCILDNGHKKLKEYC 773
FH+ K+ + R+R+ + S++D L+ N +R LP + TSK C + + + +C
Sbjct: 1017 FHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDTFC 1076
Query: 772 VEVAVEDC-DSPFLLDVIRDSVIPILLCITLKGFMDFKQVDILW-------DSQSQPDGQ 617
+ V + +C S LDVI+D VIP LL +KGF + K+V+ILW +S G+
Sbjct: 1077 ITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGE 1136
Query: 616 LFLKISMAKSCSPGKFWRTLKNACIPIMDLIDWERSHPDGVYDISDAFGITSAYSYFLGS 437
L+L++S++ K W L N C+ +MD+IDW RSHPD + AFGI + + +FL +
Sbjct: 1137 LYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNN 1196
Query: 436 LKLAVSDIGRNIHPEHLLLVSDSLSVTGEFHGLSAKGLKQQRAHLSISSPFTQACFSNPE 257
+K A+SD G++I EHL L ++ LS TGEF GL++KGLKQQR H +SSPF QACFSNP
Sbjct: 1197 MKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPS 1256
Query: 256 KCFIEAAKHGSVDCLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHNQKQTENIYGTL 86
CF++AAK G D L GT+D +AWG+ +GTGG F I+YS K + ++Y L
Sbjct: 1257 ACFVKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLL 1313