BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00003792
         (3561 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010904635.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   932   0.0  
ref|XP_010904633.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   932   0.0  
ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   905   0.0  
ref|XP_009400360.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   904   0.0  
ref|XP_010904634.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   885   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   882   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   877   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...   874   0.0  
ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   869   0.0  
ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   864   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              857   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...   857   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...   857   0.0  
gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium r...   850   0.0  
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   850   0.0  
ref|XP_012071554.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   848   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   845   0.0  
ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   841   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   841   0.0  
gb|KDO62286.1| hypothetical protein CISIN_1g001795mg [Citrus sin...   840   0.0  

>ref|XP_010904635.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X3
            [Elaeis guineensis]
          Length = 825

 Score =  932 bits (2408), Expect(2) = 0.0
 Identities = 469/658 (71%), Positives = 533/658 (81%), Gaps = 2/658 (0%)
 Frame = -1

Query: 3285 KFPTTFYHLTPLKSPISLDPTTDFAQSIEFPWTKPLNFAFLEDPVRIXXXXXSGNEGSVN 3106
            KFP   Y  +P     SL    DF +  +  W  P+     + P +I        E    
Sbjct: 2    KFPWLGYGFSPDFPRKSLK--MDFCEDPD--WFSPILSTEFDAPAKIATSDSCREE---R 54

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            K YN+LRRRQIK           EYKELERVMLEKKLAP LPYVKSLFLGWFEPLRDAIE
Sbjct: 55   KTYNALRRRQIKAETEAWERAAAEYKELERVMLEKKLAPCLPYVKSLFLGWFEPLRDAIE 114

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
            +EQ +QK +  KAAYA HIGLLPADKM+VIVMHK         +EGCVRVVQAAIHIGEA
Sbjct: 115  KEQMLQKTKRQKAAYALHIGLLPADKMAVIVMHKMMGLLMTGQEEGCVRVVQAAIHIGEA 174

Query: 2745 IEQEVKIHNYLEKTKK-SRRSNQVDKNLISRE-QEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IE E KIH YLEKTK+  RR NQ +K++I  + Q   RK+VT+ +KMKKLIEVQKL+K+E
Sbjct: 175  IEHEFKIHTYLEKTKRPGRRKNQEEKDVILNQGQGNLRKKVTKLIKMKKLIEVQKLVKNE 234

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGKL 2392
             +++ WGRDAQAKLGSRLI LLIESAFVQ P  QL  S P+IRPAFRH+FK V K+DGKL
Sbjct: 235  IELDSWGRDAQAKLGSRLIELLIESAFVQSPPKQLIDSLPDIRPAFRHSFKAVAKEDGKL 294

Query: 2391 TSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGSR 2212
             +++GV+ECD L+ +GLDSTARHVVIPYLPMLIPPK WKGYDKGGHL LPS+VMRTHG++
Sbjct: 295  RNKYGVIECDPLVQKGLDSTARHVVIPYLPMLIPPKNWKGYDKGGHLFLPSYVMRTHGAK 354

Query: 2211 EQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIPV 2032
            +QQDAI+SVPRKQL+KVF+ALD LGSTKWRVN  +L+V+E +WS+GG +AGL+DR DIPV
Sbjct: 355  DQQDAIKSVPRKQLQKVFKALDILGSTKWRVNRPILDVVEGIWSKGGGIAGLVDRVDIPV 414

Query: 2031 PDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLDF 1852
            P+R DSED +EI++WRW  RK KKANNEMHAQRCD ELKLSVARKM+DEEGFYYPHNLDF
Sbjct: 415  PERSDSEDSVEIRKWRWRVRKVKKANNEMHAQRCDTELKLSVARKMRDEEGFYYPHNLDF 474

Query: 1851 RGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGRL 1672
            RGRAYPMHSHLNHLSSD+CRGILEFAEGR LGKSGL WLKIHLAN+YGGGV KL YDGRL
Sbjct: 475  RGRAYPMHSHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVGKLSYDGRL 534

Query: 1671 TFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIHQ 1492
             FVENHL DIFDSA NP++G RWW+NAEDPFQCLAACINLSDAL+S SP   ISH+PIHQ
Sbjct: 535  AFVENHLHDIFDSAANPIEGDRWWLNAEDPFQCLAACINLSDALKSSSPTEAISHIPIHQ 594

Query: 1491 DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            DGSCNGLQHYAALGRDSLEAAAVNLVAGEKP DVYSGIAARV++IM KDS +DP T+P
Sbjct: 595  DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPGDVYSGIAARVMDIMRKDSARDPTTNP 652



 Score =  296 bits (759), Expect(2) = 0.0
 Identities = 144/161 (89%), Positives = 155/161 (96%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDRLLF+ASCYAAKVTL+ALGE
Sbjct: 663  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGLITDDRLLFTASCYAAKVTLDALGE 722

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            MFQAARSIMKWL DCAK+IASED+PVRWTTPLGLPVVQPY+NCERHLIRTSLQVLALQR 
Sbjct: 723  MFQAARSIMKWLADCAKVIASEDQPVRWTTPLGLPVVQPYKNCERHLIRTSLQVLALQRE 782

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFA 825
            GHSV+VKRQK AFPPNFVHSLDGSHMMMTA++C+NAGLHFA
Sbjct: 783  GHSVSVKRQKSAFPPNFVHSLDGSHMMMTAISCKNAGLHFA 823


>ref|XP_010904633.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
            [Elaeis guineensis]
          Length = 894

 Score =  932 bits (2408), Expect(2) = 0.0
 Identities = 469/658 (71%), Positives = 533/658 (81%), Gaps = 2/658 (0%)
 Frame = -1

Query: 3285 KFPTTFYHLTPLKSPISLDPTTDFAQSIEFPWTKPLNFAFLEDPVRIXXXXXSGNEGSVN 3106
            KFP   Y  +P     SL    DF +  +  W  P+     + P +I        E    
Sbjct: 2    KFPWLGYGFSPDFPRKSLK--MDFCEDPD--WFSPILSTEFDAPAKIATSDSCREE---R 54

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            K YN+LRRRQIK           EYKELERVMLEKKLAP LPYVKSLFLGWFEPLRDAIE
Sbjct: 55   KTYNALRRRQIKAETEAWERAAAEYKELERVMLEKKLAPCLPYVKSLFLGWFEPLRDAIE 114

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
            +EQ +QK +  KAAYA HIGLLPADKM+VIVMHK         +EGCVRVVQAAIHIGEA
Sbjct: 115  KEQMLQKTKRQKAAYALHIGLLPADKMAVIVMHKMMGLLMTGQEEGCVRVVQAAIHIGEA 174

Query: 2745 IEQEVKIHNYLEKTKK-SRRSNQVDKNLISRE-QEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IE E KIH YLEKTK+  RR NQ +K++I  + Q   RK+VT+ +KMKKLIEVQKL+K+E
Sbjct: 175  IEHEFKIHTYLEKTKRPGRRKNQEEKDVILNQGQGNLRKKVTKLIKMKKLIEVQKLVKNE 234

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGKL 2392
             +++ WGRDAQAKLGSRLI LLIESAFVQ P  QL  S P+IRPAFRH+FK V K+DGKL
Sbjct: 235  IELDSWGRDAQAKLGSRLIELLIESAFVQSPPKQLIDSLPDIRPAFRHSFKAVAKEDGKL 294

Query: 2391 TSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGSR 2212
             +++GV+ECD L+ +GLDSTARHVVIPYLPMLIPPK WKGYDKGGHL LPS+VMRTHG++
Sbjct: 295  RNKYGVIECDPLVQKGLDSTARHVVIPYLPMLIPPKNWKGYDKGGHLFLPSYVMRTHGAK 354

Query: 2211 EQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIPV 2032
            +QQDAI+SVPRKQL+KVF+ALD LGSTKWRVN  +L+V+E +WS+GG +AGL+DR DIPV
Sbjct: 355  DQQDAIKSVPRKQLQKVFKALDILGSTKWRVNRPILDVVEGIWSKGGGIAGLVDRVDIPV 414

Query: 2031 PDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLDF 1852
            P+R DSED +EI++WRW  RK KKANNEMHAQRCD ELKLSVARKM+DEEGFYYPHNLDF
Sbjct: 415  PERSDSEDSVEIRKWRWRVRKVKKANNEMHAQRCDTELKLSVARKMRDEEGFYYPHNLDF 474

Query: 1851 RGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGRL 1672
            RGRAYPMHSHLNHLSSD+CRGILEFAEGR LGKSGL WLKIHLAN+YGGGV KL YDGRL
Sbjct: 475  RGRAYPMHSHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVGKLSYDGRL 534

Query: 1671 TFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIHQ 1492
             FVENHL DIFDSA NP++G RWW+NAEDPFQCLAACINLSDAL+S SP   ISH+PIHQ
Sbjct: 535  AFVENHLHDIFDSAANPIEGDRWWLNAEDPFQCLAACINLSDALKSSSPTEAISHIPIHQ 594

Query: 1491 DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            DGSCNGLQHYAALGRDSLEAAAVNLVAGEKP DVYSGIAARV++IM KDS +DP T+P
Sbjct: 595  DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPGDVYSGIAARVMDIMRKDSARDPTTNP 652



 Score =  424 bits (1091), Expect(2) = 0.0
 Identities = 204/232 (87%), Positives = 222/232 (95%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDRLLF+ASCYAAKVTL+ALGE
Sbjct: 663  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGLITDDRLLFTASCYAAKVTLDALGE 722

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            MFQAARSIMKWL DCAK+IASED+PVRWTTPLGLPVVQPY+NCERHLIRTSLQVLALQR 
Sbjct: 723  MFQAARSIMKWLADCAKVIASEDQPVRWTTPLGLPVVQPYKNCERHLIRTSLQVLALQRE 782

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            GHSV+VKRQK AFPPNFVHSLDGSHMMMTA++C+NAGLHFAGVHDSFWTHACDV+RMNQI
Sbjct: 783  GHSVSVKRQKSAFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSFWTHACDVDRMNQI 842

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LREQFVELY+IPILENLLE FQTSFP L+FP LP+RG+FDL++VL SPYFFN
Sbjct: 843  LREQFVELYNIPILENLLEDFQTSFPTLSFPPLPDRGNFDLKKVLGSPYFFN 894


>ref|XP_010273705.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 956

 Score =  905 bits (2339), Expect(2) = 0.0
 Identities = 436/600 (72%), Positives = 514/600 (85%), Gaps = 4/600 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN+LRRRQIK           EY+ELER M EKKLAP+LPYVKSLFLGWFEPLR+AIE
Sbjct: 115  RKYNALRRRQIKVETEAWEKTAAEYRELEREMCEKKLAPNLPYVKSLFLGWFEPLREAIE 174

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
            +EQ++Q+ +  KAAYA +IGLLPADKM+VIVMHK         +EG VRVVQAA+HIGEA
Sbjct: 175  KEQKLQESKKQKAAYAPYIGLLPADKMAVIVMHKMMGLLMTGQEEGYVRVVQAAVHIGEA 234

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQVD---KNLISREQEIKRKRVTQSVKMKKLIEVQKLLKD 2575
            IEQEV+IHN+L+KTKK +   +++    + +++EQ+I RKRV   VK KKLIEVQKL+K+
Sbjct: 235  IEQEVRIHNFLKKTKKYQGGKKIEGQGDDKVTKEQDILRKRVNILVKKKKLIEVQKLVKN 294

Query: 2574 ENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGK 2395
            EN++ PWGRDAQAKLGSRLI LL E+A+VQPP++QL  SP EIRPAFRHTF+T+ K+ G+
Sbjct: 295  ENEIRPWGRDAQAKLGSRLIELLTETAYVQPPINQLGDSPREIRPAFRHTFRTLSKETGR 354

Query: 2394 -LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHG 2218
             +  R+GV+ECD L+ +GLD TARH+VIPY+PMLIPPKKWKGYDKGGHL LPS+VMRTHG
Sbjct: 355  RVGKRYGVIECDPLVGRGLDRTARHMVIPYVPMLIPPKKWKGYDKGGHLFLPSYVMRTHG 414

Query: 2217 SREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDI 2038
            ++ QQDAI++VP KQ++KVFEALDTLG TKWRVN +VL V+ES+W+RGGN+AGL+DREDI
Sbjct: 415  AKRQQDAIKNVPGKQMQKVFEALDTLGRTKWRVNRKVLGVVESIWARGGNMAGLVDREDI 474

Query: 2037 PVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNL 1858
            P+P++PDSEDLIE+++W+WN RK KK N E HAQRCDIELKLSVARK+KDEEGFYYPHNL
Sbjct: 475  PIPEKPDSEDLIEMQKWKWNMRKTKKINRERHAQRCDIELKLSVARKIKDEEGFYYPHNL 534

Query: 1857 DFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDG 1678
            DFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LGK+GL WLKIHLAN+Y GGV+KL YD 
Sbjct: 535  DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKAGLRWLKIHLANLYAGGVDKLSYDD 594

Query: 1677 RLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPI 1498
            RL FVENHL DIFDSAD P+DG RWW+NAEDPFQCLAACINLS+AL+S SPH+ ISHLPI
Sbjct: 595  RLDFVENHLDDIFDSADKPIDGNRWWLNAEDPFQCLAACINLSEALKSSSPHTAISHLPI 654

Query: 1497 HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            HQDGSCNGLQHYAALGR  LEAAAVNLVAGEKPADVYS IAARV  IM  D++KDP TDP
Sbjct: 655  HQDGSCNGLQHYAALGRYQLEAAAVNLVAGEKPADVYSEIAARVHSIMKMDAEKDPTTDP 714



 Score =  401 bits (1030), Expect(2) = 0.0
 Identities = 196/232 (84%), Positives = 213/232 (91%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVTYVGAREQIKR L E+G IT+DRLLFSA+CYAAKVTL AL E
Sbjct: 725  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITNDRLLFSAACYAAKVTLTALEE 784

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            MFQAARSIM WL DCAK+IASE++PVRWTTPLGLPVVQPY   +RHL+RTSLQVLALQR 
Sbjct: 785  MFQAARSIMGWLSDCAKVIASENQPVRWTTPLGLPVVQPYLKPQRHLVRTSLQVLALQRE 844

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G  V VKRQ+ AFPPNFVHSLDGSHMMMTA+ACR+AGLHFAGVHDSFWTHACDV+RMNQI
Sbjct: 845  GDLVEVKRQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDRMNQI 904

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELYD+PILE LLESFQ SFP LTFP LP+RGDFDL+EVL+SPYFFN
Sbjct: 905  LREKFVELYDMPILERLLESFQVSFPLLTFPPLPDRGDFDLKEVLESPYFFN 956


>ref|XP_009400360.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic [Musa
            acuminata subsp. malaccensis]
          Length = 809

 Score =  904 bits (2336), Expect(2) = 0.0
 Identities = 435/567 (76%), Positives = 498/567 (87%), Gaps = 2/567 (0%)
 Frame = -1

Query: 3012 MLEKKLAPSLPYVKSLFLGWFEPLRDAIEEEQRVQKERMHKAAYARHIGLLPADKMSVIV 2833
            MLEKKLAPSLPYVKSLFLGWFEPLRD IE EQR+QK +M KAAYA HIGLLPADKM+VIV
Sbjct: 1    MLEKKLAPSLPYVKSLFLGWFEPLRDVIEREQRLQKTKMQKAAYAPHIGLLPADKMAVIV 60

Query: 2832 MHKXXXXXXXXXQEGCVRVVQAAIHIGEAIEQEVKIHNYLEKTKKSRR-SNQVDKNLI-S 2659
            MHK         ++GC+R+VQAAI IGEAIEQE KI  YLEK+K+ RR  N+ D+N+I  
Sbjct: 61   MHKMMGLLMVGQEDGCIRLVQAAIRIGEAIEQEFKIQAYLEKSKRPRRRKNEGDRNVILC 120

Query: 2658 REQEIKRKRVTQSVKMKKLIEVQKLLKDENDMEPWGRDAQAKLGSRLIGLLIESAFVQPP 2479
             +QEI RK+V + +KMKKLIEVQKLL++E +ME WGRD QAKLGSRLI LL+ESAFVQ P
Sbjct: 121  TQQEILRKKVMKLIKMKKLIEVQKLLRNEIEMESWGRDGQAKLGSRLIELLLESAFVQVP 180

Query: 2478 LDQLACSPPEIRPAFRHTFKTVPKDDGKLTSRFGVVECDVLIHQGLDSTARHVVIPYLPM 2299
             D LA  PPEI PAFRHTFK + K++GK  +R+GV+ECD L+H+G DSTARH+VIPYLPM
Sbjct: 181  CDSLADCPPEILPAFRHTFKNISKENGKSINRYGVIECDPLVHKGFDSTARHMVIPYLPM 240

Query: 2298 LIPPKKWKGYDKGGHLLLPSHVMRTHGSREQQDAIRSVPRKQLKKVFEALDTLGSTKWRV 2119
            LIPPK WKGYD GGHL LPS+VMRTHG++EQQ AI+SVPRKQL+KVFEALDTLG TKWR+
Sbjct: 241  LIPPKSWKGYDNGGHLFLPSYVMRTHGAQEQQKAIKSVPRKQLQKVFEALDTLGRTKWRI 300

Query: 2118 NTRVLNVLESMWSRGGNVAGLIDREDIPVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHA 1939
            N R+L+V+E +WSRGG +AGL+DR+DI +PDRP++EDL EIK+WRW++RKAKKAN+EMHA
Sbjct: 301  NRRILDVIEIVWSRGGGIAGLVDRKDIQLPDRPETEDLTEIKKWRWSTRKAKKANSEMHA 360

Query: 1938 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSL 1759
            QRCD+ELKLSVA KM+DEEGFYYPHN+DFRGRAYPMHSHLNHLSSD+CRGILEFAEG+ L
Sbjct: 361  QRCDVELKLSVAHKMRDEEGFYYPHNIDFRGRAYPMHSHLNHLSSDLCRGILEFAEGKPL 420

Query: 1758 GKSGLHWLKIHLANIYGGGVEKLPYDGRLTFVENHLRDIFDSADNPLDGKRWWINAEDPF 1579
            GKSGLHWLKIHLANIYGGGVEKL YD RLTFV+NHLRDIFDSA+NP+DG RWWI+AEDPF
Sbjct: 421  GKSGLHWLKIHLANIYGGGVEKLSYDRRLTFVKNHLRDIFDSAENPIDGNRWWISAEDPF 480

Query: 1578 QCLAACINLSDALRSPSPHSVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKP 1399
            QCLAACI+L+ AL+S SPH  ISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKP
Sbjct: 481  QCLAACIDLTKALKSSSPHMAISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKP 540

Query: 1398 ADVYSGIAARVLEIMIKDSQKDPATDP 1318
            ADVYS IA RV EI+ KDS+KDP  DP
Sbjct: 541  ADVYSEIAMRVREIIRKDSEKDPTVDP 567



 Score =  415 bits (1066), Expect(2) = 0.0
 Identities = 199/232 (85%), Positives = 217/232 (93%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLF ASCYAAKVTLNALGE
Sbjct: 578  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFGASCYAAKVTLNALGE 637

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            MF+AAR IMKWLGDCAK+IASE+EPV+WTTPLGLPVVQPYRN ERH IRTSLQVL LQR 
Sbjct: 638  MFEAARGIMKWLGDCAKIIASENEPVKWTTPLGLPVVQPYRNSERHQIRTSLQVLTLQRE 697

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G SV+VKRQK AFPPN+VHSLDGSHMMMTA++C+NAGLHFAGVHDSFWTHACDV+RMNQI
Sbjct: 698  GQSVSVKRQKTAFPPNYVHSLDGSHMMMTAISCKNAGLHFAGVHDSFWTHACDVDRMNQI 757

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FV LY+IPILENLL+ FQTSFP LTFP LP+RGDFDL++VL+SPYFFN
Sbjct: 758  LREEFVALYNIPILENLLDGFQTSFPTLTFPPLPDRGDFDLKKVLESPYFFN 809


>ref|XP_010904634.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2
            [Elaeis guineensis]
          Length = 877

 Score =  885 bits (2286), Expect(2) = 0.0
 Identities = 452/658 (68%), Positives = 516/658 (78%), Gaps = 2/658 (0%)
 Frame = -1

Query: 3285 KFPTTFYHLTPLKSPISLDPTTDFAQSIEFPWTKPLNFAFLEDPVRIXXXXXSGNEGSVN 3106
            KFP   Y  +P     SL    DF +  +  W  P+     + P +I        E    
Sbjct: 2    KFPWLGYGFSPDFPRKSLK--MDFCEDPD--WFSPILSTEFDAPAKIATSDSCREE---R 54

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            K YN+LRRRQIK           EYKELERVMLEKKLAP LPYVKSLFLGWFEPLRDAIE
Sbjct: 55   KTYNALRRRQIKAETEAWERAAAEYKELERVMLEKKLAPCLPYVKSLFLGWFEPLRDAIE 114

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
            +EQ +QK +  KAAYA HIGLLPADKM+VIVMHK         +EGCVRVVQAAIHIGEA
Sbjct: 115  KEQMLQKTKRQKAAYALHIGLLPADKMAVIVMHKMMGLLMTGQEEGCVRVVQAAIHIGEA 174

Query: 2745 IEQEVKIHNYLEKTKK-SRRSNQVDKNLISRE-QEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IE E KIH YLEKTK+  RR NQ +K++I  + Q   RK+VT+ +KMKKLIEVQKL+K+E
Sbjct: 175  IEHEFKIHTYLEKTKRPGRRKNQEEKDVILNQGQGNLRKKVTKLIKMKKLIEVQKLVKNE 234

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGKL 2392
             +++ WGRDAQAKLGSRLI LLIESAFVQ P  QL  S P+IRPAFRH+FK V K+DGKL
Sbjct: 235  IELDSWGRDAQAKLGSRLIELLIESAFVQSPPKQLIDSLPDIRPAFRHSFKAVAKEDGKL 294

Query: 2391 TSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGSR 2212
             +++GV+ECD L+ +GLDSTARHVVIPYLPMLIPPK WKGYDKGGHL LPS+VMRTHG++
Sbjct: 295  RNKYGVIECDPLVQKGLDSTARHVVIPYLPMLIPPKNWKGYDKGGHLFLPSYVMRTHGAK 354

Query: 2211 EQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIPV 2032
            +QQDAI+SVPRKQL+KVF+ALD LGSTKWRVN  +L+V+E +WS+GG +AGL+DR DIPV
Sbjct: 355  DQQDAIKSVPRKQLQKVFKALDILGSTKWRVNRPILDVVEGIWSKGGGIAGLVDRVDIPV 414

Query: 2031 PDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLDF 1852
            P+R DSED +EI++WRW  RK KKANNEMHAQRCD ELKLSVARKM+DEEGFYYPHNLDF
Sbjct: 415  PERSDSEDSVEIRKWRWRVRKVKKANNEMHAQRCDTELKLSVARKMRDEEGFYYPHNLDF 474

Query: 1851 RGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGRL 1672
            RGRAYPMHSHLNHLSSD+CRGILEFAEGR LGKSGL WLKIHLAN+YGGGV KL YDGRL
Sbjct: 475  RGRAYPMHSHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVGKLSYDGRL 534

Query: 1671 TFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIHQ 1492
             FVENHL DIFDSA NP++G RWW+NAEDPFQCLAACINLSDAL+S SP   ISH+PIHQ
Sbjct: 535  AFVENHLHDIFDSAANPIEGDRWWLNAEDPFQCLAACINLSDALKSSSPTEAISHIPIHQ 594

Query: 1491 DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
                             LEAAAVNLVAGEKP DVYSGIAARV++IM KDS +DP T+P
Sbjct: 595  -----------------LEAAAVNLVAGEKPGDVYSGIAARVMDIMRKDSARDPTTNP 635



 Score =  424 bits (1091), Expect(2) = 0.0
 Identities = 204/232 (87%), Positives = 222/232 (95%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDRLLF+ASCYAAKVTL+ALGE
Sbjct: 646  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGLITDDRLLFTASCYAAKVTLDALGE 705

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            MFQAARSIMKWL DCAK+IASED+PVRWTTPLGLPVVQPY+NCERHLIRTSLQVLALQR 
Sbjct: 706  MFQAARSIMKWLADCAKVIASEDQPVRWTTPLGLPVVQPYKNCERHLIRTSLQVLALQRE 765

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            GHSV+VKRQK AFPPNFVHSLDGSHMMMTA++C+NAGLHFAGVHDSFWTHACDV+RMNQI
Sbjct: 766  GHSVSVKRQKSAFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSFWTHACDVDRMNQI 825

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LREQFVELY+IPILENLLE FQTSFP L+FP LP+RG+FDL++VL SPYFFN
Sbjct: 826  LREQFVELYNIPILENLLEDFQTSFPTLSFPPLPDRGNFDLKKVLGSPYFFN 877


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 973

 Score =  882 bits (2280), Expect(2) = 0.0
 Identities = 439/674 (65%), Positives = 527/674 (78%), Gaps = 26/674 (3%)
 Frame = -1

Query: 3261 LTPLKSPISLDPTTDFAQ---------SIEF--PWTKPLNFAFLEDPVRIXXXXXSGNEG 3115
            L P   PI   P  D  Q         SI+F  P ++P    F++DP  I      G   
Sbjct: 61   LRPPPDPIQFHPLNDSVQDNLVENLENSIKFQVPISEPR--IFIQDPPWIASLFLKGMFK 118

Query: 3114 SVNK------------KYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVK 2971
             VNK            KYN LRRRQIK           +YK+LERVM EKKLAPSLPYVK
Sbjct: 119  KVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDLERVMREKKLAPSLPYVK 178

Query: 2970 SLFLGWFEPLRDAIEEEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQE 2791
            +LFLGWFEPLR+AI +EQ+ Q+ + HK A+A HI LLPADKM++IVMHK         Q+
Sbjct: 179  ALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMALIVMHKLMGLVMMGNQD 238

Query: 2790 GCVRVVQAAIHIGEAIEQEVKIHNYLEKTKKSRR--SNQVDKNLISREQEIKRKRVTQSV 2617
            GCV+VVQAA+HIG AIEQEV+IH++LEK+K  +R  ++  D++ +S+E+EI RKRV   +
Sbjct: 239  GCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADEDGLSKEKEILRKRVNGLI 298

Query: 2616 KMKKLIEVQKLLKDENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPA 2437
            + K+L+EVQKLLK E DM+PWGRD QAKLGSRLI LL E+A VQPPLDQLA  PP++RPA
Sbjct: 299  RRKRLVEVQKLLKKE-DMKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPA 357

Query: 2436 FRHTFKTVPKDDG-KLTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKG 2260
            FRH  K   K  G KL   +GV+ECD L+  GLD TA+H++IPY+PML+PPK+WKGYDKG
Sbjct: 358  FRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKG 417

Query: 2259 GHLLLPSHVMRTHGSREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWS 2080
            GHL LPS+VMRTHGSR+Q D +R++  +Q++KVFEALD LGSTKWR+N +VLNV+ES+W+
Sbjct: 418  GHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWA 477

Query: 2079 RGGNVAGLIDREDIPVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVAR 1900
            RGGN+AGL+DRED+PVP++P SED  EI+EWRW++RKAKK N E H+QRCD ELKLSVAR
Sbjct: 478  RGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVAR 537

Query: 1899 KMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLA 1720
            +MKDE+GFYYPHNLDFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LGKSGL WLKIHLA
Sbjct: 538  RMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLA 597

Query: 1719 NIYGGGVEKLPYDGRLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDAL 1540
            N+Y GGVEKL YDGR++FV+NH+ DIFDSA NP++G RWW+ AEDP QCLAACINLS+AL
Sbjct: 598  NLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEAL 657

Query: 1539 RSPSPHSVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLE 1360
             SPSPH+VISHLPIHQDGSCNGLQHYAALGRD+LEAAAVNLVAGEKPADVYS IA RV +
Sbjct: 658  NSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHD 717

Query: 1359 IMIKDSQKDPATDP 1318
            IM +DS KDP T+P
Sbjct: 718  IMKRDSNKDPTTNP 731



 Score =  395 bits (1014), Expect(2) = 0.0
 Identities = 192/232 (82%), Positives = 211/232 (90%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            Q+DRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLF+A+CYAAKVTL ALGE
Sbjct: 742  QIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGE 801

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 802  IFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRE 861

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
             + V V++Q+ AFPPNFVHSLDGSHMMMTALACR+AG+ FAGVHDSFWTHACDV++MNQI
Sbjct: 862  SNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQI 921

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE FVELY  PILENLLESFQ ++P LTFP LPERGDFDL+EVLKSPYFFN
Sbjct: 922  LRENFVELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  877 bits (2266), Expect(2) = 0.0
 Identities = 425/598 (71%), Positives = 503/598 (84%), Gaps = 2/598 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            + Y  LRRRQ+K           EY+E+ER M EKKLAP+LPYVK+LFLGWFEPLR+AI+
Sbjct: 141  RNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAID 200

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
            +EQR Q+ +  KAAYA HI LLPADKM+VIVMHK         +EGCVRVVQAA+ IG A
Sbjct: 201  KEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMA 260

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQVDKNLIS-REQEIKRKRVTQSVKMKKLIEVQKLLKDEN 2569
            IEQEV+IH++LEKTK   R   V  +    RE+EI RKRV   ++ KK+IEVQKL+K+E 
Sbjct: 261  IEQEVRIHSFLEKTKNFERHKTVGHSQEGLREKEILRKRVKSFIRKKKIIEVQKLVKNE- 319

Query: 2568 DMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGKLT 2389
            ++ PWGRD QAKLGSRLI LL E+A+VQ P++Q A  PP++RPAFRHTFKTV K+ G+  
Sbjct: 320  EITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKD 379

Query: 2388 SR-FGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGSR 2212
             R +GV+ECD L+  GLD TA+H+VIPY+PMLIPPKKWKGYDKGG+L LPS+VMRTHGSR
Sbjct: 380  WRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSR 439

Query: 2211 EQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIPV 2032
            +QQDA++SVPR+QL+KVFEALDTLG+TKWR+N RVL+V+ES+W+RGGN+ GL+DRE++P+
Sbjct: 440  KQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPL 499

Query: 2031 PDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLDF 1852
            P++P +EDL EI+ W+WN+RKAKK N E H+ RCD E+KLSVARKMKDEEGFYYPHNLDF
Sbjct: 500  PEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDF 559

Query: 1851 RGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGRL 1672
            RGRAYPMH HLNHLSSD+CRG+LEFAEGR LGKSGL WLKI LAN+Y GGVEKL YDGRL
Sbjct: 560  RGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRL 619

Query: 1671 TFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIHQ 1492
             FV+NHL D+FDSADNPL+G RWW+ AEDPFQCLAACINLS+ALRS SPH+VISHLPIHQ
Sbjct: 620  AFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQ 679

Query: 1491 DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            DGSCNGLQHYAALGR+SLEA+AVNLVAGEKPADVYS IAARV EIM +DS KDPATDP
Sbjct: 680  DGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDP 737



 Score =  393 bits (1009), Expect(2) = 0.0
 Identities = 189/232 (81%), Positives = 214/232 (92%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVTY+GAREQIKR LAE+G ITD+RLLF+A+CYAAKVTL ALGE
Sbjct: 748  QVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGE 807

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLG+CAK+IASE++PV+WTTPLGLPV+QPY   ERHLIRTSLQVLALQR 
Sbjct: 808  IFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQRE 867

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G  V +++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGL FAGVHDSFWTHACDV++MNQI
Sbjct: 868  GSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQI 927

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY +PILENLLESFQTS P LTFP LP+RG+FDLREVL+SPYFFN
Sbjct: 928  LREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  874 bits (2258), Expect(2) = 0.0
 Identities = 439/685 (64%), Positives = 530/685 (77%), Gaps = 23/685 (3%)
 Frame = -1

Query: 3303 PPEPDSKFPTTFYHLTPLKSPISLDPTTDFAQSIEFPWTK-----PLNFA---FLEDPVR 3148
            PPEP         H+ PL+  I  D   + + + + P ++     P   A   F++DP  
Sbjct: 60   PPEP--------VHIPPLRDSIQ-DNIVENSMNFQIPMSEFHLITPQESAPRIFIQDPPW 110

Query: 3147 IXXXXXSGNEGSVNKK------------YNSLRRRQIKXXXXXXXXXXXEYKELERVMLE 3004
            I      G     N++            YN LRRRQIK           EYK+LE+VM E
Sbjct: 111  IASLFLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMRE 170

Query: 3003 KKLAPSLPYVKSLFLGWFEPLRDAIEEEQRVQKERMHKAAYARHIGLLPADKMSVIVMHK 2824
            KKLAP+LPYVK+LFLGWFEPLR+AI  EQ+ Q+ + HKAA+A HI LLPADKM++IVMHK
Sbjct: 171  KKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHK 230

Query: 2823 XXXXXXXXXQEGCVRVVQAAIHIGEAIEQEVKIHNYLEKTK--KSRRSNQVDKNLISREQ 2650
                     Q+GCV+VVQAA+HIG AIEQEV+IH++LEKTK  + +++   D++ +S+E+
Sbjct: 231  MMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKEK 290

Query: 2649 EIKRKRVTQSVKMKKLIEVQKLLKDENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQ 2470
            EI RKRV   ++ K+L EVQKLL  E +M+PWGRD QAKLGSRLI LL E+A+VQPPL Q
Sbjct: 291  EILRKRVNGLIRRKRLNEVQKLLIKE-EMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQ 349

Query: 2469 LACSPPEIRPAFRHTFKTVPKDDG-KLTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLI 2293
            LA SPP++RPAFRH FK V K  G K+   +GV+ECD L+  GLD TA+H++IPY+PML+
Sbjct: 350  LADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLV 409

Query: 2292 PPKKWKGYDKGGHLLLPSHVMRTHGSREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNT 2113
            PPK+WKGYDKGGHL LPS+VMRTHGSR+Q DA+R++ R Q++KVFEALD LGSTKWRVN 
Sbjct: 410  PPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNK 469

Query: 2112 RVLNVLESMWSRGGNVAGLIDREDIPVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQR 1933
            +VL+V+ES+W+RGGN+AGL++RED+PVPD+  SEDL EI+EW+W+ RKAKK N E H+QR
Sbjct: 470  KVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQR 529

Query: 1932 CDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGK 1753
            CD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LGK
Sbjct: 530  CDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 589

Query: 1752 SGLHWLKIHLANIYGGGVEKLPYDGRLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQC 1573
            SGL WLKIHLAN+Y GGVEKL Y+GRL FV+NH+ DIFDSA NP++G RWW+ AEDP QC
Sbjct: 590  SGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQC 649

Query: 1572 LAACINLSDALRSPSPHSVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPAD 1393
            LAACINLS+AL SPSPH+VISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLV G+KPAD
Sbjct: 650  LAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPAD 709

Query: 1392 VYSGIAARVLEIMIKDSQKDPATDP 1318
            VYS IAARV EIM +DS KDP T P
Sbjct: 710  VYSEIAARVHEIMKRDSNKDPTTSP 734



 Score =  394 bits (1011), Expect(2) = 0.0
 Identities = 190/232 (81%), Positives = 213/232 (91%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            Q+DRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLF+A+CYAAKVTL ALGE
Sbjct: 745  QIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGE 804

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 805  IFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRE 864

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
             +SV +++Q+ AFPPNFVHSLDGSHMMMTALACR+AGL FAGVHDSFWTH CDV++MN+I
Sbjct: 865  SNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEI 924

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY +PILE+LLESFQ S+PALTFP LPERGDFDL +VL+SPYFFN
Sbjct: 925  LREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
          Length = 976

 Score =  869 bits (2246), Expect(2) = 0.0
 Identities = 437/685 (63%), Positives = 528/685 (77%), Gaps = 23/685 (3%)
 Frame = -1

Query: 3303 PPEPDSKFPTTFYHLTPLKSPISLDPTTDFAQSIEFPWTK-----PLNFA---FLEDPVR 3148
            PPEP         H+ PL+  I  D   + + + + P ++     P       F++DP  
Sbjct: 60   PPEP--------VHIPPLRDSIQ-DNIVENSMNFQIPMSEFHLITPQESGPRIFIQDPPW 110

Query: 3147 IXXXXXSGNEGSVNKK------------YNSLRRRQIKXXXXXXXXXXXEYKELERVMLE 3004
            I      G     N++            YN LRRRQIK           EYK+LE+VM E
Sbjct: 111  IASLFLKGIYKRANQELKLESKEIERRNYNLLRRRQIKAETEAWERMVDEYKDLEKVMRE 170

Query: 3003 KKLAPSLPYVKSLFLGWFEPLRDAIEEEQRVQKERMHKAAYARHIGLLPADKMSVIVMHK 2824
            KKLAP+LPYVK+LFLGWFEPLR+AI  EQ+ Q+ + HKAA+A HI LLPADKM++IVMHK
Sbjct: 171  KKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHK 230

Query: 2823 XXXXXXXXXQEGCVRVVQAAIHIGEAIEQEVKIHNYLEKTK--KSRRSNQVDKNLISREQ 2650
                     Q+GCV+VVQAA+HIG AIEQEV+IH++LEKTK  + +++   D++ +S+E+
Sbjct: 231  MMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKEK 290

Query: 2649 EIKRKRVTQSVKMKKLIEVQKLLKDENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQ 2470
            EI RKRV   ++ K+L EVQKLL  E +M+PWGRD QAKLGSRLI LL E+A+VQPPL Q
Sbjct: 291  EILRKRVNGLIRRKRLNEVQKLLIKE-EMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQ 349

Query: 2469 LACSPPEIRPAFRHTFKTVPKDDG-KLTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLI 2293
            LA SPP++RPAFRH FK V K  G K+   +GV+ECD L+  GLD TA+H++IPY+PML+
Sbjct: 350  LAESPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLV 409

Query: 2292 PPKKWKGYDKGGHLLLPSHVMRTHGSREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNT 2113
            PPK+WKGYDKGGHL LPS+VMRTHGSR+Q DA+R++ R Q++KVFEALD LGSTKWRVN 
Sbjct: 410  PPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNK 469

Query: 2112 RVLNVLESMWSRGGNVAGLIDREDIPVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQR 1933
            +VL+V+ES+W+RGGN+AGL++RED+PVPD+  SEDL EI+EW+W+ RKAKK N E H+ R
Sbjct: 470  KVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSLR 529

Query: 1932 CDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGK 1753
            CD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LGK
Sbjct: 530  CDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGK 589

Query: 1752 SGLHWLKIHLANIYGGGVEKLPYDGRLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQC 1573
            SGL WLKIHLAN+Y GGVEKL Y+GRL FV+NH+ DIFDSA NP++G RWW+ AEDP QC
Sbjct: 590  SGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQC 649

Query: 1572 LAACINLSDALRSPSPHSVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPAD 1393
            LAACINLS+AL SPSPH+VISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLV G+KPAD
Sbjct: 650  LAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPAD 709

Query: 1392 VYSGIAARVLEIMIKDSQKDPATDP 1318
            VYS IAARV EIM +DS KDP T P
Sbjct: 710  VYSEIAARVHEIMKRDSNKDPTTSP 734



 Score =  394 bits (1011), Expect(2) = 0.0
 Identities = 190/232 (81%), Positives = 213/232 (91%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            Q+DRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLF+A+CYAAKVTL ALGE
Sbjct: 745  QIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGE 804

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 805  IFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRE 864

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
             +SV +++Q+ AFPPNFVHSLDGSHMMMTALACR+AGL FAGVHDSFWTH CDV++MN+I
Sbjct: 865  SNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEI 924

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY +PILE+LLESFQ S+PALTFP LPERGDFDL +VL+SPYFFN
Sbjct: 925  LREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x
            bretschneideri]
          Length = 972

 Score =  864 bits (2232), Expect(2) = 0.0
 Identities = 421/599 (70%), Positives = 493/599 (82%), Gaps = 3/599 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQIK           EYK+LERVM EKKLAPSLPYVK+LFLGWFEPLR+AI 
Sbjct: 133  RKYNLLRRRQIKAETEAWERMVEEYKDLERVMREKKLAPSLPYVKTLFLGWFEPLREAIA 192

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
             EQ+VQ+ + HKAA+A HI LLP DKM++IVMHK         Q+GCV+VVQAA+HIG A
Sbjct: 193  REQQVQQTKKHKAAFAPHIDLLPPDKMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMA 252

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQV--DKNLISREQEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IEQEV+IH++LEKTK  +R      D++ + +E+EI RKRV   +K K+L EVQKLL  E
Sbjct: 253  IEQEVRIHSFLEKTKNFQRKKTAVADEDSLIKEKEILRKRVNVLIKRKRLREVQKLLVKE 312

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDG-K 2395
             + +PWGRD QAKLGSRLI LL E+A+VQPPL+QLA  PP++RPAFRH FK   K  G K
Sbjct: 313  -EFKPWGRDTQAKLGSRLIELLTETAYVQPPLNQLADGPPDVRPAFRHRFKAAAKTPGQK 371

Query: 2394 LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGS 2215
            L   +GV+ECD L+  GLD TA+H++IPY+PML+PP+KWKGYDKGGHL LPS+VMRTHGS
Sbjct: 372  LVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPRKWKGYDKGGHLFLPSYVMRTHGS 431

Query: 2214 REQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIP 2035
            R+Q D +R++  KQ++KVFEALD LGSTKWRVN +VLNV+ES+W+RGGN+AGL+DRED+P
Sbjct: 432  RKQVDTMRNISGKQMQKVFEALDMLGSTKWRVNKKVLNVVESIWARGGNIAGLVDREDVP 491

Query: 2034 VPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLD 1855
            VPD+P  E L EI+EW+W+ RKAKK N E H+ RCD ELKLSVARKMKDEEGFYYPHNLD
Sbjct: 492  VPDKPPLEGLTEIQEWKWSVRKAKKINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLD 551

Query: 1854 FRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGR 1675
            FRGRAYPMH HLNHLSSD+CRG+LEFAEGR LGKSGL WLKIHLAN+Y GGVEKL Y+ R
Sbjct: 552  FRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEER 611

Query: 1674 LTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIH 1495
              FV++H+ DIFDSA NP++G RWW+ AEDP QCLAACINLS+AL SPSPH+VISHLPIH
Sbjct: 612  HAFVDHHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIH 671

Query: 1494 QDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            QDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYS IAARV EIM +DS KDP T P
Sbjct: 672  QDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAARVHEIMERDSNKDPTTSP 730



 Score =  397 bits (1021), Expect(2) = 0.0
 Identities = 192/232 (82%), Positives = 215/232 (92%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            Q+DRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLF+A+CYAAKVTL ALGE
Sbjct: 741  QIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGFITDDRLLFTAACYAAKVTLAALGE 800

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 801  IFQAARGIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 860

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
             +S+ V++Q+ AFPPNFVHSLDGSHMMMTALACR+AGL FAGVHDSFWTHACDV++MN+I
Sbjct: 861  SNSIDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHACDVDQMNEI 920

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+F+ELY +PILENLLESFQ S+PALTFP LPERGDFDL+EVL+SPYFFN
Sbjct: 921  LREKFIELYSMPILENLLESFQASYPALTFPPLPERGDFDLQEVLESPYFFN 972


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  857 bits (2215), Expect(2) = 0.0
 Identities = 413/567 (72%), Positives = 487/567 (85%), Gaps = 2/567 (0%)
 Frame = -1

Query: 3012 MLEKKLAPSLPYVKSLFLGWFEPLRDAIEEEQRVQKERMHKAAYARHIGLLPADKMSVIV 2833
            M EKKLAP+LPYVK+LFLGWFEPLR+AI++EQR Q+ +  KAAYA HI LLPADKM+VIV
Sbjct: 1    MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60

Query: 2832 MHKXXXXXXXXXQEGCVRVVQAAIHIGEAIEQEVKIHNYLEKTKKSRRSNQVDKNLIS-R 2656
            MHK         +EGCVRVVQAA+ IG AIEQEV+IH++LEKTK   R   V  +    R
Sbjct: 61   MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGLR 120

Query: 2655 EQEIKRKRVTQSVKMKKLIEVQKLLKDENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPL 2476
            E+EI RKRV   ++ KK+IEVQKL+K+E ++ PWGRD QAKLGSRLI LL E+A+VQ P+
Sbjct: 121  EKEILRKRVKSFIRKKKIIEVQKLVKNE-EITPWGRDTQAKLGSRLIELLTETAYVQTPV 179

Query: 2475 DQLACSPPEIRPAFRHTFKTVPKDDGKLTSR-FGVVECDVLIHQGLDSTARHVVIPYLPM 2299
            +Q A  PP++RPAFRHTFKTV K+ G+   R +GV+ECD L+  GLD TA+H+VIPY+PM
Sbjct: 180  NQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPM 239

Query: 2298 LIPPKKWKGYDKGGHLLLPSHVMRTHGSREQQDAIRSVPRKQLKKVFEALDTLGSTKWRV 2119
            LIPPKKWKGYDKGG+L LPS+VMRTHGSR+QQDA++SVPR+QL+KVFEALDTLG+TKWR+
Sbjct: 240  LIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRI 299

Query: 2118 NTRVLNVLESMWSRGGNVAGLIDREDIPVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHA 1939
            N RVL+V+ES+W+RGGN+ GL+DRE++P+P++P +EDL EI+ W+WN+RKAKK N E H+
Sbjct: 300  NRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHS 359

Query: 1938 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSL 1759
             RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CRG+LEFAEGR L
Sbjct: 360  LRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPL 419

Query: 1758 GKSGLHWLKIHLANIYGGGVEKLPYDGRLTFVENHLRDIFDSADNPLDGKRWWINAEDPF 1579
            GKSGL WLKI LAN+Y GGVEKL YDGRL FV+NHL D+FDSADNPL+G RWW+ AEDPF
Sbjct: 420  GKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPF 479

Query: 1578 QCLAACINLSDALRSPSPHSVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKP 1399
            QCLAACINLS+ALRS SPH+VISHLPIHQDGSCNGLQHYAALGR+SLEA+AVNLVAGEKP
Sbjct: 480  QCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKP 539

Query: 1398 ADVYSGIAARVLEIMIKDSQKDPATDP 1318
            ADVYS IAARV EIM +DS KDPATDP
Sbjct: 540  ADVYSEIAARVHEIMKRDSNKDPATDP 566



 Score =  393 bits (1009), Expect(2) = 0.0
 Identities = 189/232 (81%), Positives = 214/232 (92%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVTY+GAREQIKR LAE+G ITD+RLLF+A+CYAAKVTL ALGE
Sbjct: 577  QVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGE 636

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLG+CAK+IASE++PV+WTTPLGLPV+QPY   ERHLIRTSLQVLALQR 
Sbjct: 637  IFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQRE 696

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G  V +++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGL FAGVHDSFWTHACDV++MNQI
Sbjct: 697  GSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQI 756

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY +PILENLLESFQTS P LTFP LP+RG+FDLREVL+SPYFFN
Sbjct: 757  LREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 808


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  857 bits (2213), Expect(2) = 0.0
 Identities = 412/600 (68%), Positives = 501/600 (83%), Gaps = 4/600 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQ+K           EY+EL+R M EKKLAP+LPYVK LFLGWFEP+R+AI 
Sbjct: 16   RKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIA 75

Query: 2925 EEQRVQKERMHK--AAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIG 2752
             EQ+VQK +  K  AAYA HI LLPADKM+VIVMHK         + G V+VVQAA+HIG
Sbjct: 76   REQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIG 135

Query: 2751 EAIEQEVKIHNYLEKTKKSRRSNQVDK-NLISREQEIKRKRVTQSVKMKKLIEVQKLLKD 2575
             AIEQEV+IHN+LEKTK  +R    D+   +S+E+EI +KRV   ++ ++L+EVQKL+K+
Sbjct: 136  VAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKN 195

Query: 2574 ENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGK 2395
            E +++PWGRDAQAKLGSRL+ LL E+A+VQPP+DQ   SPP+++PAFRH FKT+ KD GK
Sbjct: 196  E-EIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGK 254

Query: 2394 -LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHG 2218
             +  R+GV+ECD LI  GLD +A+H++IPY+PML+PPKKWKGYDKGG+L LPS+VMRTHG
Sbjct: 255  KMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHG 314

Query: 2217 SREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDI 2038
            SR+QQDA++ V  K+++KVFEALDTLGSTKWRVN +VL V+ES+W+ GGN+AGL+DR DI
Sbjct: 315  SRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDI 374

Query: 2037 PVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNL 1858
            P+P++P SED  E +EW+W+ RKA K N E H+QRCD ELKLSVARKM++EEGFYYPHNL
Sbjct: 375  PIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNL 434

Query: 1857 DFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDG 1678
            DFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LG+SGLHWLKIHLAN++ GGVEKL +DG
Sbjct: 435  DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDG 494

Query: 1677 RLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPI 1498
            RL FV+NHL DIFDSA+NP++G RWW+ AEDPFQCLAACINLS++L+S SPHSV+S+LPI
Sbjct: 495  RLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPI 554

Query: 1497 HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYS IA RV  IM +DS KDPAT+P
Sbjct: 555  HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNP 614



 Score =  392 bits (1006), Expect(2) = 0.0
 Identities = 190/233 (81%), Positives = 213/233 (91%), Gaps = 1/233 (0%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDR+LF+A+CY AKVTL ALGE
Sbjct: 625  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGE 684

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR+IM WLGDCAK+IASE++PV+WTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 685  LFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQRE 744

Query: 947  GHSVA-VKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQ 771
            G SV  V++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGLHFAGVHDSFWTHACDV +MNQ
Sbjct: 745  GDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQ 804

Query: 770  ILREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            ILRE+FVELY +P+LENL ES QTS+P+L FP LPERG+FDLREVLKSPYFFN
Sbjct: 805  ILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 857


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  857 bits (2213), Expect(2) = 0.0
 Identities = 412/600 (68%), Positives = 501/600 (83%), Gaps = 4/600 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQ+K           EY+EL+R M EKKLAP+LPYVK LFLGWFEP+R+AI 
Sbjct: 138  RKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIA 197

Query: 2925 EEQRVQKERMHK--AAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIG 2752
             EQ+VQK +  K  AAYA HI LLPADKM+VIVMHK         + G V+VVQAA+HIG
Sbjct: 198  REQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIG 257

Query: 2751 EAIEQEVKIHNYLEKTKKSRRSNQVDK-NLISREQEIKRKRVTQSVKMKKLIEVQKLLKD 2575
             AIEQEV+IHN+LEKTK  +R    D+   +S+E+EI +KRV   ++ ++L+EVQKL+K+
Sbjct: 258  VAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKN 317

Query: 2574 ENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGK 2395
            E +++PWGRDAQAKLGSRL+ LL E+A+VQPP+DQ   SPP+++PAFRH FKT+ KD GK
Sbjct: 318  E-EIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGK 376

Query: 2394 -LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHG 2218
             +  R+GV+ECD LI  GLD +A+H++IPY+PML+PPKKWKGYDKGG+L LPS+VMRTHG
Sbjct: 377  KMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHG 436

Query: 2217 SREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDI 2038
            SR+QQDA++ V  K+++KVFEALDTLGSTKWRVN +VL V+ES+W+ GGN+AGL+DR DI
Sbjct: 437  SRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDI 496

Query: 2037 PVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNL 1858
            P+P++P SED  E +EW+W+ RKA K N E H+QRCD ELKLSVARKM++EEGFYYPHNL
Sbjct: 497  PIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNL 556

Query: 1857 DFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDG 1678
            DFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LG+SGLHWLKIHLAN++ GGVEKL +DG
Sbjct: 557  DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDG 616

Query: 1677 RLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPI 1498
            RL FV+NHL DIFDSA+NP++G RWW+ AEDPFQCLAACINLS++L+S SPHSV+S+LPI
Sbjct: 617  RLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPI 676

Query: 1497 HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYS IA RV  IM +DS KDPAT+P
Sbjct: 677  HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNP 736



 Score =  396 bits (1017), Expect(2) = 0.0
 Identities = 190/232 (81%), Positives = 213/232 (91%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDR+LF+A+CY AKVTL ALGE
Sbjct: 747  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGE 806

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR+IM WLGDCAK+IASE++PV+WTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 807  LFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQRE 866

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G SV V++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGLHFAGVHDSFWTHACDV +MNQI
Sbjct: 867  GDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQI 926

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY +P+LENL ES QTS+P+L FP LPERG+FDLREVLKSPYFFN
Sbjct: 927  LREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score =  850 bits (2195), Expect(2) = 0.0
 Identities = 411/600 (68%), Positives = 500/600 (83%), Gaps = 4/600 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQ+K           EY+ELER M EKKLAP+LPYVK LFLGWFEPLR+AI 
Sbjct: 132  RKYNLLRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIA 191

Query: 2925 EEQRVQKERMHK--AAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIG 2752
            +EQ+VQK +  K  AAYA HI LLPADK++VIVMHK         ++G V+VVQAA+HIG
Sbjct: 192  KEQKVQKGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVMGAEEDGYVQVVQAAVHIG 251

Query: 2751 EAIEQEVKIHNYLEKTKKSRRSNQVDK-NLISREQEIKRKRVTQSVKMKKLIEVQKLLKD 2575
             AIEQEV+IH++LEKTK  +R   VD+    S+E+EI RKRV   ++ ++L EVQKL+K+
Sbjct: 252  VAIEQEVRIHSFLEKTKNYQRKQIVDEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKN 311

Query: 2574 ENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDG- 2398
            E +++PWGRDAQAKLGSRL+ LL E+A+VQPP+DQ   SP ++RPAFRH FKT+ +  G 
Sbjct: 312  E-EIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQ 370

Query: 2397 KLTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHG 2218
            K+  R+GV+ECD LI  GLD +A+H++IPY+PML+PPKKWKGYDKGG+L LPS+VMRTHG
Sbjct: 371  KIKKRYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHG 430

Query: 2217 SREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDI 2038
            SR+QQ+A++ V  K ++KVFEALDTLGSTKWRVN +VL V+ES+W+ GGN+AGL+DR DI
Sbjct: 431  SRKQQEALKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDI 490

Query: 2037 PVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNL 1858
            P+P++P SED  EI+EW+W+ RKA K N E H+QRCD ELKLSVARKM++EEGFYYPHNL
Sbjct: 491  PIPEKPYSEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNL 550

Query: 1857 DFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDG 1678
            DFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LG+SGLHWLKIHLAN+Y GGVEKL +DG
Sbjct: 551  DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDG 610

Query: 1677 RLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPI 1498
            RL FV+NHL +IFDSA+NP++G RWW+ AEDPFQCLAAC+NLS+AL+S SPHS+IS+LPI
Sbjct: 611  RLAFVDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPI 670

Query: 1497 HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            HQDGSCNGLQHYAALGRD+LEAAAVNLVAGEKPADVYS IA RV  IM +DS KDPAT+P
Sbjct: 671  HQDGSCNGLQHYAALGRDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNP 730



 Score =  382 bits (982), Expect(2) = 0.0
 Identities = 184/230 (80%), Positives = 209/230 (90%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDRLLFSA+CY AKVTL ALGE
Sbjct: 741  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAALGE 800

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR+IM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRT+LQVLALQR 
Sbjct: 801  LFQAARNIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLALQRE 860

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G+SV V++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGL+FAGVHDSFWTHACDV +MNQI
Sbjct: 861  GNSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKMNQI 920

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYF 618
            LRE+FVELY +P+LENLLESF+TS+P L FP LPERG+FDL+ VL   +F
Sbjct: 921  LREKFVELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLQTVLACTFF 970


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
            raimondii] gi|763786877|gb|KJB53873.1| hypothetical
            protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score =  850 bits (2195), Expect(2) = 0.0
 Identities = 411/600 (68%), Positives = 500/600 (83%), Gaps = 4/600 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQ+K           EY+ELER M EKKLAP+LPYVK LFLGWFEPLR+AI 
Sbjct: 132  RKYNLLRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIA 191

Query: 2925 EEQRVQKERMHK--AAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIG 2752
            +EQ+VQK +  K  AAYA HI LLPADK++VIVMHK         ++G V+VVQAA+HIG
Sbjct: 192  KEQKVQKGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVMGAEEDGYVQVVQAAVHIG 251

Query: 2751 EAIEQEVKIHNYLEKTKKSRRSNQVDK-NLISREQEIKRKRVTQSVKMKKLIEVQKLLKD 2575
             AIEQEV+IH++LEKTK  +R   VD+    S+E+EI RKRV   ++ ++L EVQKL+K+
Sbjct: 252  VAIEQEVRIHSFLEKTKNYQRKQIVDEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKN 311

Query: 2574 ENDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDG- 2398
            E +++PWGRDAQAKLGSRL+ LL E+A+VQPP+DQ   SP ++RPAFRH FKT+ +  G 
Sbjct: 312  E-EIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQ 370

Query: 2397 KLTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHG 2218
            K+  R+GV+ECD LI  GLD +A+H++IPY+PML+PPKKWKGYDKGG+L LPS+VMRTHG
Sbjct: 371  KIKKRYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHG 430

Query: 2217 SREQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDI 2038
            SR+QQ+A++ V  K ++KVFEALDTLGSTKWRVN +VL V+ES+W+ GGN+AGL+DR DI
Sbjct: 431  SRKQQEALKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDI 490

Query: 2037 PVPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNL 1858
            P+P++P SED  EI+EW+W+ RKA K N E H+QRCD ELKLSVARKM++EEGFYYPHNL
Sbjct: 491  PIPEKPYSEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNL 550

Query: 1857 DFRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDG 1678
            DFRGRAYPMH HLNHLSSD+CRG+LEFAEGR LG+SGLHWLKIHLAN+Y GGVEKL +DG
Sbjct: 551  DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDG 610

Query: 1677 RLTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPI 1498
            RL FV+NHL +IFDSA+NP++G RWW+ AEDPFQCLAAC+NLS+AL+S SPHS+IS+LPI
Sbjct: 611  RLAFVDNHLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPI 670

Query: 1497 HQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            HQDGSCNGLQHYAALGRD+LEAAAVNLVAGEKPADVYS IA RV  IM +DS KDPAT+P
Sbjct: 671  HQDGSCNGLQHYAALGRDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNP 730



 Score =  400 bits (1027), Expect(2) = 0.0
 Identities = 192/232 (82%), Positives = 215/232 (92%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDRLLFSA+CY AKVTL ALGE
Sbjct: 741  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAALGE 800

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR+IM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRT+LQVLALQR 
Sbjct: 801  LFQAARNIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLALQRE 860

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G+SV V++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGL+FAGVHDSFWTHACDV +MNQI
Sbjct: 861  GNSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKMNQI 920

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY +P+LENLLESF+TS+P L FP LPERG+FDLREVLKSPYFFN
Sbjct: 921  LREKFVELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLREVLKSPYFFN 972


>ref|XP_012071554.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha
            curcas]
          Length = 993

 Score =  848 bits (2190), Expect(2) = 0.0
 Identities = 404/598 (67%), Positives = 497/598 (83%), Gaps = 2/598 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQI+           EYK + R M +KKLAP+LPYVK LFLGWFEPL++AIE
Sbjct: 155  RKYNLLRRRQIREETEAWERMADEYKGMVREMCDKKLAPNLPYVKGLFLGWFEPLKEAIE 214

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
             EQ++Q+ +  K+A+A HI LLPADKM++IVMHK         ++GCV VVQAA+ IG A
Sbjct: 215  AEQKLQRSKKQKSAFAPHIELLPADKMALIVMHKMMGLMMVGHEDGCVPVVQAAVQIGMA 274

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQVD--KNLISREQEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            +EQEV+IHN+LEKTK  +R N V   +  +S+E+E+ RKR+   ++ K+LI+VQKL+++E
Sbjct: 275  VEQEVRIHNFLEKTKSFQRKNAVGDAQESLSKEKEVLRKRINNLIRRKRLIQVQKLVRNE 334

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDGKL 2392
             + +PWGRD QAKLGSRL+ LLIESAFVQPP++Q   + P++RPAFRH F+T      K+
Sbjct: 335  -ETKPWGRDTQAKLGSRLVELLIESAFVQPPVNQSPDTLPDVRPAFRHRFRTANNPGRKI 393

Query: 2391 TSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGSR 2212
              R+GV+ECD L+  GLD +A+H++IPY PML+PPKKWKGYDKGGH  LPS +MRTHGSR
Sbjct: 394  MKRYGVIECDPLVLAGLDGSAKHMMIPYFPMLVPPKKWKGYDKGGHFFLPSFLMRTHGSR 453

Query: 2211 EQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIPV 2032
            +QQDA++ VP K ++KVFEALDTLG+TKWRVN RVL+V+ES+W+ GGN+AGL+DR DIP+
Sbjct: 454  KQQDALKHVPGKNMQKVFEALDTLGNTKWRVNRRVLDVVESIWAGGGNIAGLVDRADIPI 513

Query: 2031 PDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLDF 1852
            P++P SEDL EI++WRW+ RKAKK N EMH+QRCD ELKLSVARK+KDE+GFYYPHNLDF
Sbjct: 514  PEKPISEDLTEIQKWRWSMRKAKKINREMHSQRCDTELKLSVARKLKDEDGFYYPHNLDF 573

Query: 1851 RGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGRL 1672
            RGRAYPMH HL+HLSSD+ RGILEFAEGR LGKSGLHWLKIHLAN+Y GGV+KL ++GRL
Sbjct: 574  RGRAYPMHPHLSHLSSDLSRGILEFAEGRPLGKSGLHWLKIHLANLYSGGVKKLSHEGRL 633

Query: 1671 TFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIHQ 1492
             FVENHL +IFDSA NP+ GKRWW+ AEDPFQCLAACINLS+AL+S SP++VISHLPIHQ
Sbjct: 634  AFVENHLDEIFDSAANPVHGKRWWLMAEDPFQCLAACINLSEALKSSSPYNVISHLPIHQ 693

Query: 1491 DGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            DGSCNGLQHYAALGR+SLEAAAVNLVAGEKPADVY+ IA RV EI++KDS KDPAT+P
Sbjct: 694  DGSCNGLQHYAALGRNSLEAAAVNLVAGEKPADVYTEIAVRVHEIILKDSSKDPATNP 751



 Score =  396 bits (1017), Expect(2) = 0.0
 Identities = 192/232 (82%), Positives = 212/232 (91%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLFSA+CY AKVT+ ALGE
Sbjct: 762  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTMKALGE 821

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLGDCAK+IASED+PVRWTTPLGLPVVQPY   +RHLIRTSLQVLALQR 
Sbjct: 822  LFQAARDIMSWLGDCAKVIASEDQPVRWTTPLGLPVVQPYFKSKRHLIRTSLQVLALQRE 881

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G SV V++Q+ AFPPNFVHSLDGSHMMMTA+ACR+A L FAGVHDSFWTHACDV+ MN+I
Sbjct: 882  GSSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHACDVDLMNRI 941

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LR++FVELY +PILENLLE FQTS+PALTFP LPERG+FDL+EVLKSPYFFN
Sbjct: 942  LRDKFVELYRMPILENLLEDFQTSYPALTFPPLPERGNFDLQEVLKSPYFFN 993


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score =  845 bits (2183), Expect(2) = 0.0
 Identities = 404/599 (67%), Positives = 498/599 (83%), Gaps = 3/599 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +K+N LRRRQ+K           EYKELE  M+EK+LAP+LP++K LFLGWF PLR+AIE
Sbjct: 170  RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIE 229

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
             EQ++Q+ +  KAAYA HI LLPADK++VIVMHK         ++ CV+VVQAA+HIG A
Sbjct: 230  REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 289

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQV--DKNLISREQEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IEQE++IH++LEKTK  +R   +   + ++S+E+E+ RKRV   +K K+++E QKLLK+E
Sbjct: 290  IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 349

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDG-K 2395
             + +PWGRD QAKLGSRL+ LLIE+A+VQ P++    SPP++RPAFRH FKT+ K  G K
Sbjct: 350  -ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 408

Query: 2394 LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGS 2215
             T R+GVVECD L+  GLD +A+H++IPY+PML+PPKKWKGY+KGG+L LPS+VMRTHGS
Sbjct: 409  TTKRYGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 468

Query: 2214 REQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIP 2035
            R+QQ+A++SV    +KKVFEALDTLGSTKWRVN +VL+VLES+W  GGN+AGL+DR D+P
Sbjct: 469  RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVP 528

Query: 2034 VPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLD 1855
            +P++P SED+ E+++W+W+ RKAKK N E H+QRCD ELKLSVAR+MKDEEGFYYPHNLD
Sbjct: 529  IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 588

Query: 1854 FRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGR 1675
            FRGRAYPMH HLNHLSSDVCRG+LEFAEGR LGKSGL WLKIHLAN++ GGVEKL +DGR
Sbjct: 589  FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 648

Query: 1674 LTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIH 1495
            L FVENHL +IFDSA+NP++G RWW+ AEDPFQCLAACINLS+AL+S SPHSVISHLPIH
Sbjct: 649  LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 708

Query: 1494 QDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            QDGSCNGLQHYAALGR++LEAAAVNLVAGEKPADVYS IA RV EIM +DS KDP+  P
Sbjct: 709  QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 767



 Score =  396 bits (1018), Expect(2) = 0.0
 Identities = 191/232 (82%), Positives = 215/232 (92%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDR LF+A+CYAAKVTL ALGE
Sbjct: 778  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGE 837

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +F+AARSIM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 838  IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 897

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G SV +++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGLHFAGVHDSFWTHACDV+ MNQI
Sbjct: 898  GKSVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQI 957

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LR++FVELY++PILENLLESFQTS+P L+FP LPERG+FDL EVL+SPYFFN
Sbjct: 958  LRKKFVELYNMPILENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus
            euphratica]
          Length = 983

 Score =  841 bits (2173), Expect(2) = 0.0
 Identities = 402/599 (67%), Positives = 494/599 (82%), Gaps = 3/599 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQI+           EY+ L R M E+KLAP+LPYVK L LGWFEPL++AIE
Sbjct: 144  RKYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIE 203

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
            +EQ+++K +  K+A++ +I LLPADKM+VIVMHK         ++GCVRVVQAA+ IG A
Sbjct: 204  KEQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMA 263

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQVD--KNLISREQEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IEQEV+IHN+LEKTK  +R   +   +  + +E+E+ RKRV   ++ K+L+EVQ L+K +
Sbjct: 264  IEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVK-Q 322

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDG-K 2395
            ++ +PW R  QAKLGSRLI LL E+A+VQPP++Q    PP++RPAFRH FKT+ K+ G K
Sbjct: 323  DETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQK 382

Query: 2394 LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGS 2215
            +  ++GV+ECD LI  GLD TA+H++IPY PML+PPKKWKGYDKGGHL LPS++MRTHGS
Sbjct: 383  IVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYIMRTHGS 442

Query: 2214 REQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIP 2035
            R+QQ A+RSVP KQ++KVFEALDTLG+TKWRVN R+L+V+E +W+ GGN+AGL+DREDIP
Sbjct: 443  RQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIP 502

Query: 2034 VPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLD 1855
            +P++P S+DL EI++W+W+ RKAKK N E H+QRCD ELKLSVARK+KDEEGFYYPHNLD
Sbjct: 503  IPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLD 562

Query: 1854 FRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGR 1675
            FRGRAYPMH HL HLSSD+CRG+LEF EGR LGKSGL WLKIHLAN+Y GGVEKL +DGR
Sbjct: 563  FRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGR 622

Query: 1674 LTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIH 1495
            L FVENHL +IFDSA NP++GKRWW+ AEDPFQCLAACINLS+AL S SPH+VISHLPIH
Sbjct: 623  LAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIH 682

Query: 1494 QDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            QDGSCNGLQHYAALGRDSLEAAAVNLVA EKP+DVYS IA RV EI+ +DS KDPAT+P
Sbjct: 683  QDGSCNGLQHYAALGRDSLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNP 741



 Score =  388 bits (996), Expect(2) = 0.0
 Identities = 188/232 (81%), Positives = 211/232 (90%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLFSA+CY AKVTL ALGE
Sbjct: 752  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGE 811

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLGDCAK+IASED+PV+WTTPLGLPVVQPY   ERHLI+TSLQ+LALQR 
Sbjct: 812  LFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKRERHLIKTSLQILALQRE 871

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G SV V++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGL FAGVHDSFWTHA DV+ MN+I
Sbjct: 872  GSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHARDVDLMNRI 931

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY++PILENLLE FQTS+P L FP LPERG+FDL++VL+SPYFFN
Sbjct: 932  LREKFVELYNMPILENLLEDFQTSYPTLKFPPLPERGNFDLQKVLRSPYFFN 983


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score =  841 bits (2173), Expect(2) = 0.0
 Identities = 402/599 (67%), Positives = 494/599 (82%), Gaps = 3/599 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +KYN LRRRQI+           EY+ L R M E+KLAP+LPYVK L LGWFEPL++AIE
Sbjct: 43   RKYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIE 102

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
            +EQ+++K +  K+A++ +I LLPADKM+VIVMHK         ++GCVRVVQAA+ IG A
Sbjct: 103  KEQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMA 162

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQVDK--NLISREQEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IEQEV+IHN+LEKTK  +R   + +    + +E+E+ RKRV   ++ K+L+EVQ L+K +
Sbjct: 163  IEQEVRIHNFLEKTKNYQRKKTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVK-Q 221

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDG-K 2395
            ++ +PW R  QAKLGSRLI LL E+A+VQPP++Q    PP++RPAFRH FKT+ K+ G K
Sbjct: 222  DETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQK 281

Query: 2394 LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGS 2215
            +  ++GV+ECD LI  GLD TA+H++IPY PML+PPKKWKGYDKGGHL LPS+VMRTHGS
Sbjct: 282  IVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGS 341

Query: 2214 REQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIP 2035
            R+QQ A+RSVP KQ++KVFEALDTLG+TKWRVN R+L+V+E +W+ GGN+AGL+DREDIP
Sbjct: 342  RQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIP 401

Query: 2034 VPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLD 1855
            +P++P S+DL EI++W+W+ RKAKK N E H+QRCD ELKLSVARK+KDEEGFYYPHNLD
Sbjct: 402  IPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLD 461

Query: 1854 FRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGR 1675
            FRGRAYPMH HL HLSSD+CRG+LEF EGR LGKSGL WLKIHLAN+Y GGVEKL +DGR
Sbjct: 462  FRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGR 521

Query: 1674 LTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIH 1495
            L FVENHL +IFDSA NP++GKRWW+ AEDPFQCLAACINLS+AL S SPH+VISHLPIH
Sbjct: 522  LAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIH 581

Query: 1494 QDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            QDGSCNGLQHYAALGRD+LEAAAVNLVA EKP+DVYS IA RV EI+ +DS KDPAT+P
Sbjct: 582  QDGSCNGLQHYAALGRDTLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNP 640



 Score =  389 bits (1000), Expect(2) = 0.0
 Identities = 188/232 (81%), Positives = 211/232 (90%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVTYVGAREQIKR L E+G ITDDRLLFSA+CY AKVTL ALGE
Sbjct: 651  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGE 710

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +FQAAR IM WLGDCAK+IASED+PV+WTTPLGLPVVQPY   ERHLI+TSLQ+LALQR 
Sbjct: 711  LFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQRE 770

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G SV V++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGL FAGVHDSFWTHA DV+ MN+I
Sbjct: 771  GSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRI 830

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LRE+FVELY++PILENLLE FQTS+P L FP LPERG+FDL++VL+SPYFFN
Sbjct: 831  LREKFVELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>gb|KDO62286.1| hypothetical protein CISIN_1g001795mg [Citrus sinensis]
            gi|641843387|gb|KDO62287.1| hypothetical protein
            CISIN_1g001795mg [Citrus sinensis]
          Length = 1012

 Score =  840 bits (2170), Expect(2) = 0.0
 Identities = 402/599 (67%), Positives = 497/599 (82%), Gaps = 3/599 (0%)
 Frame = -1

Query: 3105 KKYNSLRRRQIKXXXXXXXXXXXEYKELERVMLEKKLAPSLPYVKSLFLGWFEPLRDAIE 2926
            +K+N LRRRQ+K           EYKELE  M+EK+LAP+LP++K LFLGWF PL +AIE
Sbjct: 173  RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232

Query: 2925 EEQRVQKERMHKAAYARHIGLLPADKMSVIVMHKXXXXXXXXXQEGCVRVVQAAIHIGEA 2746
             EQ++Q+ +  KAAYA HI LLPADK++VIVMHK         ++ CV+VVQAA+HIG A
Sbjct: 233  REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292

Query: 2745 IEQEVKIHNYLEKTKKSRRSNQV--DKNLISREQEIKRKRVTQSVKMKKLIEVQKLLKDE 2572
            IEQE++IH++LEKTK  +R   +   + ++S+E+E+ RKRV   +K K+++E QKLLK+E
Sbjct: 293  IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 352

Query: 2571 NDMEPWGRDAQAKLGSRLIGLLIESAFVQPPLDQLACSPPEIRPAFRHTFKTVPKDDG-K 2395
             + +PWGRD QAKLGSRL+ LLIE+A+VQ P++    SPP++RPAFRH FKT+ K  G K
Sbjct: 353  -ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411

Query: 2394 LTSRFGVVECDVLIHQGLDSTARHVVIPYLPMLIPPKKWKGYDKGGHLLLPSHVMRTHGS 2215
             T R+GVVECD L+ +GLD +A+H++IPY+PML+PPKKWKGY+KGG+L LPS+VMRTHGS
Sbjct: 412  TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471

Query: 2214 REQQDAIRSVPRKQLKKVFEALDTLGSTKWRVNTRVLNVLESMWSRGGNVAGLIDREDIP 2035
            R+QQ+A++SV    +KKVFEALDTLGSTKWRVN +VL+VLES+W  GGN+AGL+DR D+ 
Sbjct: 472  RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531

Query: 2034 VPDRPDSEDLIEIKEWRWNSRKAKKANNEMHAQRCDIELKLSVARKMKDEEGFYYPHNLD 1855
            +P++P SED+ E+++W+W+ RKAKK N E H+QRCD ELKLSVAR+MKDEEGFYYPHNLD
Sbjct: 532  IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591

Query: 1854 FRGRAYPMHSHLNHLSSDVCRGILEFAEGRSLGKSGLHWLKIHLANIYGGGVEKLPYDGR 1675
            FRGRAYPMH HLNHLSSDVCRG+LEFAEGR LGKSGL WLKIHLAN++ GGVEKL +DGR
Sbjct: 592  FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651

Query: 1674 LTFVENHLRDIFDSADNPLDGKRWWINAEDPFQCLAACINLSDALRSPSPHSVISHLPIH 1495
            L FVENHL +IFDSA+NP++G RWW+ AEDPFQCLAACINLS+AL+S SPHSVISHLPIH
Sbjct: 652  LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711

Query: 1494 QDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSGIAARVLEIMIKDSQKDPATDP 1318
            QDGSCNGLQHYAALGR++LEAAAVNLVAGEKPADVYS IA RV EIM +DS KDP+  P
Sbjct: 712  QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770



 Score =  394 bits (1011), Expect(2) = 0.0
 Identities = 189/232 (81%), Positives = 215/232 (92%)
 Frame = -2

Query: 1307 QVDRKLVKQTVMTSVYGVTYVGAREQIKRTLAERGKITDDRLLFSASCYAAKVTLNALGE 1128
            QVDRKLVKQTVMTSVYGVT+VGAREQIKR L E+G ITDDR LF+A+CYAAKVTL ALGE
Sbjct: 781  QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGE 840

Query: 1127 MFQAARSIMKWLGDCAKLIASEDEPVRWTTPLGLPVVQPYRNCERHLIRTSLQVLALQRA 948
            +F+AARSIM WLGDCAK+IASE++PVRWTTPLGLPVVQPY   ERHLIRTSLQVLALQR 
Sbjct: 841  IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900

Query: 947  GHSVAVKRQKMAFPPNFVHSLDGSHMMMTALACRNAGLHFAGVHDSFWTHACDVNRMNQI 768
            G+ V +++Q+ AFPPNFVHSLDGSHMMMTA+ACR+AGLHFAGVHDSFWTHACDV+ MNQI
Sbjct: 901  GNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQI 960

Query: 767  LREQFVELYDIPILENLLESFQTSFPALTFPALPERGDFDLREVLKSPYFFN 612
            LR++FVELY++P+LENLLESFQTS+P L+FP LPERG+FDL EVL+SPYFFN
Sbjct: 961  LRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1012