BLASTX nr result
ID: Anemarrhena21_contig00003098
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00003098
(2105 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_009399689.1| PREDICTED: RNA polymerase-associated protein... 225 e-105
ref|XP_010915870.1| PREDICTED: RNA polymerase-associated protein... 221 e-104
ref|XP_008783248.1| PREDICTED: RNA polymerase-associated protein... 217 e-101
ref|XP_010925891.1| PREDICTED: RNA polymerase-associated protein... 223 e-100
ref|XP_008801861.1| PREDICTED: RNA polymerase-associated protein... 216 1e-97
ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein... 223 1e-85
ref|XP_011468358.1| PREDICTED: RNA polymerase-associated protein... 213 2e-79
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein... 197 3e-74
ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293... 110 5e-54
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr... 132 9e-54
emb|CDY50211.1| BnaCnng18930D [Brassica napus] 127 7e-53
ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein... 213 5e-52
ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein... 211 2e-51
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun... 209 5e-51
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 206 5e-50
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas... 206 6e-50
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr... 206 6e-50
ref|XP_004505022.1| PREDICTED: protein RTF1 homolog [Cicer ariet... 206 6e-50
ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein... 205 1e-49
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ... 204 2e-49
>ref|XP_009399689.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Musa
acuminata subsp. malaccensis]
gi|694997498|ref|XP_009399697.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Musa
acuminata subsp. malaccensis]
gi|694997500|ref|XP_009399705.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Musa
acuminata subsp. malaccensis]
gi|694997502|ref|XP_009399712.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Musa
acuminata subsp. malaccensis]
Length = 666
Score = 225 bits (573), Expect(4) = e-105
Identities = 171/394 (43%), Positives = 207/394 (52%), Gaps = 17/394 (4%)
Frame = -2
Query: 1348 LEDIT*SKSDT---EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYS 1178
LED++ S+ D E K +TI R KLVKWFMEPFFEE I GCFV +GI T G Y
Sbjct: 264 LEDLSPSRLDAPKFEDVKNITIRRSKLVKWFMEPFFEELISGCFVRLGIGKTRSGKPKYK 323
Query: 1177 FCVVRMWMLLTQTGSTIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCHLKGVQGLV*E 998
C+VR + T G ++ T+ + I RW ++ E
Sbjct: 324 LCLVRN-VDATDPGKH-YKLEHYTTYKWLNCIWGSDSSAARWQ-MAMVSDSPPLEDEFNE 380
Query: 997 VEWC----GSCMLTLKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKD 830
+W G M T +E+ +K EEIQKIN++V SAA VKQML EKKS + RP N+AAEKD
Sbjct: 381 WKWQVENDGGRMPTHQEILDKKEEIQKINNFVYSAATVKQMLLEKKSASLRPVNIAAEKD 440
Query: 829 QLRKEIEVAKSHHDDAEVERIQAKLKELEEFLGSPSRRMQKQ*EL-RMH*S*SQLILD*K 653
+LRKE+EVA+S D+AEVERI+A+LKELE+ + +K L M+
Sbjct: 441 RLRKEMEVAQSRRDEAEVERIRARLKELEDISRKTKQVDEKAVRLAEMNRRNRAENFKNA 500
Query: 652 LERNGVIFSQXXXXXXGIIMCRNQVEKMGMEQLSMEGIPGLLQVGAGDRN---LVGPAN- 485
E V S R M +S G G D + G AN
Sbjct: 501 SELKPVNTSLKAGEAGYDPFSRRWTRSMNY-YVSKPGGDGNAAAANDDHEKPVVAGVANG 559
Query: 484 -----GVEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWG 320
GVEAGE A K+VDT+APVD GT SN LHNFELPI LA LQ F G
Sbjct: 560 VVTINGVEAGEAATAAALQAAAGAGKLVDTSAPVDHGTASNFLHNFELPISLAALQNFGG 619
Query: 319 PTRVQLGFSARKQGIEATIGYKLPVNDGRRHALT 218
P V LG ARKQ IEATIGYK+P NDGRRH LT
Sbjct: 620 PQGVHLGLMARKQKIEATIGYKVPDNDGRRHPLT 653
Score = 127 bits (320), Expect(4) = e-105
Identities = 72/132 (54%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSDNPKFSKRKHLG 1924
MADL++L+L+AAGRT G + + P RW R++SY DGSDS +DDSD+PK++KRK G
Sbjct: 1 MADLENLLLQAAGRT-GSGQKNNNSRPQSRWKRDNSYSDGSDSRDDDSDDPKYTKRKPSG 59
Query: 1923 SQVPLKKRFDPHEK---XXXXXXXXXXXXXXXXXXXXXSAPSIGSHIYKDEEDKEELGKM 1753
SQVPLKKRFDP EK SAPS+GS +YKD+ DKEELGKM
Sbjct: 60 SQVPLKKRFDPPEKDKRGGWRDGDNDDGGGRHSDDDSDSAPSVGSDLYKDDADKEELGKM 119
Query: 1752 SELDREMIF*RR 1717
SELDREMI R
Sbjct: 120 SELDREMILAER 131
Score = 63.2 bits (152), Expect(4) = e-105
Identities = 49/107 (45%), Positives = 62/107 (57%), Gaps = 10/107 (9%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLWCDKPAAKSEALNEL*AK*MKQKDLEGYR-KMRDTAG---VVGF 1476
RKE PP P RG S D+ AAKS ALNEL AK M+Q+D EGYR ++RD G + GF
Sbjct: 155 RKERSPPLPIRGRSSAQNDRTAAKS-ALNELRAKRMRQQDPEGYRSRLRDLTGEGAIGGF 213
Query: 1475 GARDSSPAE----*LVPMPTLD-SSESEGESKTDG-RDKSPEDNEMD 1353
RDSSP++ + P D S+E E + D D+ ED +MD
Sbjct: 214 TLRDSSPSKRRNLGMAASPPSDISNEGESGGRADSDDDRFHEDKKMD 260
Score = 40.0 bits (92), Expect(4) = e-105
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = -2
Query: 1738 RDDLLAERSTKVDDYRLKKKAWKTLSKVEMKSGKKS 1631
R+ +LAERSTK+DDY+LKK A + SK+E ++S
Sbjct: 124 REMILAERSTKIDDYKLKKMARASSSKMEKSRKERS 159
>ref|XP_010915870.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Elaeis
guineensis] gi|743771171|ref|XP_010915871.1| PREDICTED:
RNA polymerase-associated protein RTF1 homolog [Elaeis
guineensis]
Length = 657
Score = 221 bits (563), Expect(5) = e-104
Identities = 167/397 (42%), Positives = 210/397 (52%), Gaps = 31/397 (7%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVR--------- 1163
E K +TI R KLVKWF EPFFEE IVGCFV V + A Y C+VR
Sbjct: 272 EDIKDITIRRSKLVKWFREPFFEELIVGCFVRVQVGSR--SGARYKLCLVRNVDASNPSK 329
Query: 1162 --------MWMLLTQTGSTIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCHLKGVQGL 1007
+ LL T W G ++ + + L F+ + H
Sbjct: 330 QYKLEHYMTYKLLNLT----W--GNMSERYEMAYVSDSPALEKE---FKEWQH------- 373
Query: 1006 V*EVEWCGSCMLTLKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQ 827
EVE G M T +++ EK E IQKI+++V SAA VKQMLQEKKS +RP NVAAEKD+
Sbjct: 374 --EVEKSGGQMPTRQDVHEKKEAIQKISNFVYSAATVKQMLQEKKSALARPVNVAAEKDR 431
Query: 826 LRKEIEVAKSHHDDAEVERIQAKLKELEEFLGSPSRR---------MQKQ*ELRMH*S*S 674
LRKE+EVA+S D+AEVERI+A+LKELEE ++ M ++ + S
Sbjct: 432 LRKEMEVAESRRDEAEVERIRARLKELEEMSRQAEQKDLKAVRLAEMNRKNRAENFKNAS 491
Query: 673 QLILD*KLERNGVIFSQXXXXXXGIIMCRNQ---VEKMGME--QLSMEGIPGLLQVGAGD 509
+L K + + R++ V K G + + G G +G GD
Sbjct: 492 EL----KPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGDGNAEAANGDNGSAAMGNGD 547
Query: 508 RNLVGPANGVEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQK 329
VG NGVEAG A K+VDT+APVDQGTESN+LH+FELPI LA LQK
Sbjct: 548 AVAVGLLNGVEAGVAATAAAQEAAAGAGKLVDTSAPVDQGTESNTLHDFELPISLAALQK 607
Query: 328 FWGPTRVQLGFSARKQGIEATIGYKLPVNDGRRHALT 218
+ GP V L F +RKQ IEAT G K+P NDGRRHALT
Sbjct: 608 YGGPHAVHLNFMSRKQKIEATTGCKVPDNDGRRHALT 644
Score = 127 bits (319), Expect(5) = e-104
Identities = 69/131 (52%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSDNPKFSKRKHLG 1924
MADL++L+L+AAGRT + + P RW RE S+ DGSDS +DDSDNP+++KRK G
Sbjct: 1 MADLENLLLQAAGRTGASGRKNSHSRPQSRWRREGSFSDGSDSKDDDSDNPRYNKRKSAG 60
Query: 1923 SQVPLKKRFDPHE--KXXXXXXXXXXXXXXXXXXXXXSAPSIGSHIYKDEEDKEELGKMS 1750
SQVPLKKR DP E K SAPS+GS +Y+DE DKEELGKMS
Sbjct: 61 SQVPLKKRLDPPEKDKRNGWGDDDDDDDDRHSSDDSDSAPSVGSDLYRDEADKEELGKMS 120
Query: 1749 ELDREMIF*RR 1717
ELDRE+I R
Sbjct: 121 ELDRELILAER 131
Score = 60.5 bits (145), Expect(5) = e-104
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLWCDKPAAKSEALNEL*AK*MKQKDLEGYR-KMRDTAGVVGFGA- 1470
RKE PP P+R S D+ AAKS ALNEL AK M+Q+D EGYR + +D AG G GA
Sbjct: 154 RKESPPPLPYRSRSSARTDRTAAKS-ALNELRAKRMRQQDPEGYRSRFKDAAGEGGGGAG 212
Query: 1469 -RDSSPA-E*LVPMPTLD-SSESEGESKTDGRD-KSPEDNEMD 1353
+DSSP+ V P D S++ E +TD D + P +N+++
Sbjct: 213 NQDSSPSRHRSVASPPSDLSNDRENGGRTDSEDERFPGNNKIE 255
Score = 37.4 bits (85), Expect(5) = e-104
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = -2
Query: 1738 RDDLLAERSTKVDDYRLKKKAWKTLSKVEMKSGKKS 1631
R+ +LAERSTK+DDY+LKK A + SK++ KS K+S
Sbjct: 124 RELILAERSTKIDDYKLKKMA-RASSKID-KSRKES 157
Score = 27.7 bits (60), Expect(5) = e-104
Identities = 15/21 (71%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 237 EGDMH*L-LTVSDYKHRRGLL 178
+G H L LTVSDYK RRGLL
Sbjct: 637 DGRRHALTLTVSDYKRRRGLL 657
>ref|XP_008783248.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Phoenix
dactylifera] gi|672119997|ref|XP_008783249.1| PREDICTED:
RNA polymerase-associated protein RTF1 homolog [Phoenix
dactylifera]
Length = 656
Score = 217 bits (553), Expect(4) = e-101
Identities = 163/389 (41%), Positives = 207/389 (53%), Gaps = 24/389 (6%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVR--------- 1163
E K +TI R KL KWF EPFFEE IVGCFV V + A Y C+VR
Sbjct: 271 EDIKDITIRRSKLTKWFREPFFEELIVGCFVRVQVGSR--SGARYKLCLVRNVDASDSSR 328
Query: 1162 MWMLLTQTGSTIWRT--GQLTSG*TVCGIMRPQQLGGRWL*FRTFCHLKGVQGLV*EVEW 989
+ L T + G ++ + I L F+ + H EVE
Sbjct: 329 QYRLEHYTTCKLLHLTWGNMSERYEMAYISDSPALEKE---FKEWQH---------EVEK 376
Query: 988 CGSCMLTLKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIE 809
G M T +++ +K E IQKINS++ SAA VKQMLQEKKS +RP NVAAEKD+LRKE+E
Sbjct: 377 SGGQMPTRQDVHDKKEAIQKINSFIYSAATVKQMLQEKKSALARPVNVAAEKDRLRKEME 436
Query: 808 VAKSHHDDAEVERIQAKLKELEEFLGSPSRR---------MQKQ*ELRMH*S*SQL-ILD 659
VA+S D+AEVERI+A+LKELEE ++ M ++ + S+L ++
Sbjct: 437 VAESRRDEAEVERIRARLKELEEMSRQAEQKDLKAVRLAEMNRKNRAENFKNASELKAVN 496
Query: 658 *KLERNGVIFSQXXXXXXGIIMCRN-QVEKMGME--QLSMEGIPGLLQVGAGDRNLVGPA 488
+L+ + RN V K G + ++ G G +G GD VG
Sbjct: 497 TRLKAGETGYDPFSRRW---TRSRNYYVSKPGGDGNAVAANGDNGRATMGDGDAVAVGLL 553
Query: 487 NGVEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRV 308
NGVEAG A K+VDT+APVD GTESN+LH+FELPI LA LQKF GP
Sbjct: 554 NGVEAGVAATAAAQEAAAGAGKLVDTSAPVDHGTESNTLHDFELPISLAALQKFGGPQAG 613
Query: 307 QLGFSARKQGIEATIGYKLPVNDGRRHAL 221
F +RKQ IEAT G K+P NDGRRHAL
Sbjct: 614 HFNFMSRKQKIEATTGCKVPDNDGRRHAL 642
Score = 129 bits (324), Expect(4) = e-101
Identities = 68/129 (52%), Positives = 83/129 (64%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSDNPKFSKRKHLG 1924
MADL++L+LEAAGR + + P RW RE S+ DGSDS +DDSD+P+++KRK G
Sbjct: 1 MADLENLLLEAAGRMGASGRKNSHSRPQSRWRREGSFSDGSDSKDDDSDSPRYNKRKSAG 60
Query: 1923 SQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSAPSIGSHIYKDEEDKEELGKMSEL 1744
SQVPLKKR DP EK SAPS+GS +Y+DE DKEELGKMSEL
Sbjct: 61 SQVPLKKRLDPPEKDKRSGWGDDDDDDRHSSDESDSAPSVGSDLYRDEADKEELGKMSEL 120
Query: 1743 DREMIF*RR 1717
DRE+I R
Sbjct: 121 DRELILAER 129
Score = 60.1 bits (144), Expect(4) = e-101
Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 8/104 (7%)
Frame = -1
Query: 1640 KEVFPPP-PFRGCPSLWCDKPAAKSEALNEL*AK*MKQKDLEGYR-KMRDTAGV---VGF 1476
++V PPP P+R S+ D+ AAKS ALNEL AK M+Q+D EGYR + +D AG G
Sbjct: 152 RKVSPPPLPYRSRSSVRTDRTAAKS-ALNELRAKRMRQQDPEGYRSRFKDAAGEGGGAGA 210
Query: 1475 GARDSSPAE-*LVPMPTLD-SSESEGESKTDGRD-KSPEDNEMD 1353
G +DSSP++ L P D S+E E +TD D + P +N+++
Sbjct: 211 GNQDSSPSKHRLAASPPSDLSNERENGGRTDSEDERFPGNNKIE 254
Score = 36.2 bits (82), Expect(4) = e-101
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = -2
Query: 1738 RDDLLAERSTKVDDYRLKKKAWKTLSKVEMKSGKKS 1631
R+ +LAERSTK+DDY+LKK A + SK++ KS K S
Sbjct: 122 RELILAERSTKIDDYKLKKMA-RASSKID-KSRKVS 155
>ref|XP_010925891.1| PREDICTED: RNA polymerase-associated protein C651.09c-like [Elaeis
guineensis] gi|743800344|ref|XP_010925892.1| PREDICTED:
RNA polymerase-associated protein C651.09c-like [Elaeis
guineensis] gi|743800346|ref|XP_010925893.1| PREDICTED:
RNA polymerase-associated protein C651.09c-like [Elaeis
guineensis] gi|743800348|ref|XP_010925894.1| PREDICTED:
RNA polymerase-associated protein C651.09c-like [Elaeis
guineensis] gi|743800350|ref|XP_010925895.1| PREDICTED:
RNA polymerase-associated protein C651.09c-like [Elaeis
guineensis]
Length = 663
Score = 223 bits (568), Expect(4) = e-100
Identities = 169/391 (43%), Positives = 206/391 (52%), Gaps = 25/391 (6%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCF--VHVGIE*TW*GYAIYSFCVVR------- 1163
E K +TI R KLVKWF EPFFE+ IVGCF V VG A Y +VR
Sbjct: 278 EDIKDITIRRSKLVKWFREPFFEDLIVGCFVRVQVGSR----SGARYKLFLVRNVDAADP 333
Query: 1162 --MWMLLTQTG----STIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCHLKGVQGLV* 1001
+ L T S W G ++ + + L F+ + H
Sbjct: 334 SRQYKLEHHTTYKMLSLTW--GNMSVKYEMAYVSDSPALEKE---FKEWQH--------- 379
Query: 1000 EVEWCGSCMLTLKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLR 821
EVE G M T + + +K E IQ+IN++V SAA VKQMLQEKKS + RP NVAAEKD+LR
Sbjct: 380 EVEKSGGRMPTRQNVQDKKEAIQRINNFVYSAATVKQMLQEKKSASGRPVNVAAEKDRLR 439
Query: 820 KEIEVAKSHHDDAEVERIQAKLKELEEFLGSPSRRMQKQ*EL-RMH*S*SQLILD*KLER 644
KE+EVA+S D+AEVERI+A+LKELE+ ++ K L M+ E
Sbjct: 440 KEMEVAESRRDEAEVERIRARLKELEDMSRKAEQKDAKAVRLAEMNRKNRAENFKNASEL 499
Query: 643 NGVIFSQXXXXXXGIIMCRN-------QVEKMGME--QLSMEGIPGLLQVGAGDRNLVGP 491
V S R V K G + ++ G G +G GD VGP
Sbjct: 500 KPVNPSLKAGEAGYDPFSRRWTRSRNYYVSKPGGDGNAVAANGDNGSATMGNGDAGAVGP 559
Query: 490 ANGVEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTR 311
NGVEAG A K+VDT+APVDQGTESN+LH+FELPI LA LQKF GP
Sbjct: 560 LNGVEAGVAATAAALEAAAGAGKLVDTSAPVDQGTESNTLHDFELPISLAALQKFGGPQA 619
Query: 310 VQLGFSARKQGIEATIGYKLPVNDGRRHALT 218
V L F +RKQ IEAT GYK+P NDGRRHALT
Sbjct: 620 VHLNFMSRKQKIEATTGYKVPDNDGRRHALT 650
Score = 126 bits (316), Expect(4) = e-100
Identities = 70/135 (51%), Positives = 84/135 (62%), Gaps = 6/135 (4%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSDNPKFSKRKHLG 1924
MADL++L+L+AAGRT + + P RW RE SY DGSDS +DDSDNP+++KRK G
Sbjct: 1 MADLENLLLQAAGRTGTSGRKNNHSRPQSRWRREGSYSDGSDSKDDDSDNPRYNKRKPAG 60
Query: 1923 SQVPLKKRFDPHEK------XXXXXXXXXXXXXXXXXXXXXSAPSIGSHIYKDEEDKEEL 1762
SQVPLKKR DP EK SAPS+GS +Y+DE DKEEL
Sbjct: 61 SQVPLKKRLDPPEKDKSSGWGDDDEDDDDDDDDRQSDDESDSAPSVGSDLYRDEADKEEL 120
Query: 1761 GKMSELDREMIF*RR 1717
GKMSELDRE+I R
Sbjct: 121 GKMSELDRELILAER 135
Score = 49.7 bits (117), Expect(4) = e-100
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLWCDKPAAKSEALNEL*AK*MKQKDLEGYR-KMRDT---AGVVGF 1476
RKE PP P R S D+ AAKS AL+EL AK MKQ+ EGYR + +D G VG
Sbjct: 159 RKESPPPLPNRSRSSARIDRTAAKS-ALDELRAKRMKQQAPEGYRGRFKDAVGDGGSVGA 217
Query: 1475 GARDSSPAE--*LVPMPTLDSSESEGESKTDGRD-KSPEDNEMD 1353
G +D SP + P+ S+E E + D D + P +N M+
Sbjct: 218 GHQDMSPPKHRSAASPPSDLSNEHESGGRMDSEDERFPGNNRME 261
Score = 39.3 bits (90), Expect(4) = e-100
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = -2
Query: 1738 RDDLLAERSTKVDDYRLKKKAWKTLSKVEMKSGKKS 1631
R+ +LAERSTK+DDY+LKK A + +K+E KS K+S
Sbjct: 128 RELILAERSTKIDDYKLKKMARASSAKME-KSRKES 162
>ref|XP_008801861.1| PREDICTED: RNA polymerase-associated protein RTF1-like [Phoenix
dactylifera] gi|672107251|ref|XP_008801934.1| PREDICTED:
RNA polymerase-associated protein RTF1-like [Phoenix
dactylifera] gi|672107253|ref|XP_008802006.1| PREDICTED:
RNA polymerase-associated protein RTF1-like [Phoenix
dactylifera] gi|672107255|ref|XP_008802085.1| PREDICTED:
RNA polymerase-associated protein RTF1-like [Phoenix
dactylifera] gi|672107257|ref|XP_008802160.1| PREDICTED:
RNA polymerase-associated protein RTF1-like [Phoenix
dactylifera]
Length = 659
Score = 216 bits (551), Expect(4) = 1e-97
Identities = 164/390 (42%), Positives = 205/390 (52%), Gaps = 24/390 (6%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCF--VHVGIE*TW*GYAIYSFCVVRMWMLLTQ 1142
E K +TI R KLVKWF EPFFEE I+GCF V VG A Y +VR
Sbjct: 274 EDIKDITIRRSKLVKWFREPFFEELILGCFVRVQVGSR----SGARYKLFLVRNVEAADP 329
Query: 1141 TGS------TIWRTGQLTSG*TVCGIMRPQQLGGRWL*--FRTFCHLKGVQGLV*EVEWC 986
+ T ++ LT G L F+ + H EVE
Sbjct: 330 SRQYKLEHHTTYKLLNLTWGNMSVKYEMAYVSDSPVLEKEFKEWQH---------EVEKS 380
Query: 985 GSCMLTLKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEV 806
G M T +++ +K E IQKIN++V SAA VKQMLQEKKS + RP NVAAEKD+LRKE+EV
Sbjct: 381 GGRMPTRQDVQDKKEAIQKINNFVYSAATVKQMLQEKKSASGRPINVAAEKDRLRKEMEV 440
Query: 805 AKSHHDDAEVERIQAKLKELEEFLGSPSRR---------MQKQ*ELRMH*S*SQLILD*K 653
A+S D+ EVERI+A+LKELE+ ++ M ++ + S+L K
Sbjct: 441 AESRRDEVEVERIRARLKELEDMSRQAEQKDAKAVRLAEMNRKNRAENFRNASEL----K 496
Query: 652 LERNGVIFSQXXXXXXGIIMCRNQ---VEKMGME--QLSMEGIPGLLQVGAGDRNLVGPA 488
+ + R++ V K G E + G G G GD VGP
Sbjct: 497 PVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGEGNAAAANGNNGSATTGNGDAGAVGPL 556
Query: 487 NGVEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRV 308
+GVEAG A K+VDT+APVDQGTESN+LH+FEL I LA LQKF GP V
Sbjct: 557 SGVEAGVAATAAALEAAAGAGKLVDTSAPVDQGTESNTLHDFELSISLAALQKFGGPQAV 616
Query: 307 QLGFSARKQGIEATIGYKLPVNDGRRHALT 218
L F +RKQ IEAT GYK+P +DGRRHALT
Sbjct: 617 HLNFMSRKQKIEATTGYKVPDSDGRRHALT 646
Score = 127 bits (320), Expect(4) = 1e-97
Identities = 70/131 (53%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSDNPKFSKRKHLG 1924
MADL++L+L+AAGRT + + P RW RE SY DGSDS +DDSDNP+++KRK G
Sbjct: 1 MADLENLLLQAAGRTGTSGRKNNHSRPQSRWRREGSYSDGSDSKDDDSDNPRYNKRKPAG 60
Query: 1923 SQVPLKKRFDPHE--KXXXXXXXXXXXXXXXXXXXXXSAPSIGSHIYKDEEDKEELGKMS 1750
SQVPLKKR DP E K SAPS+GS +Y+DE DKEELGKMS
Sbjct: 61 SQVPLKKRLDPPEKDKRSGWADDDDDDDDRHSDDESDSAPSVGSDLYRDEADKEELGKMS 120
Query: 1749 ELDREMIF*RR 1717
ELDRE+I R
Sbjct: 121 ELDRELILAER 131
Score = 46.2 bits (108), Expect(4) = 1e-97
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLWCDKPAAKSEALNEL*AK*MKQKDLEGYR-KMRDT---AGVVGF 1476
+KE PP P+R S D+ AAKS AL+EL AK M+Q+ EGYR + +D G G
Sbjct: 155 QKESPPPLPYRSRSSARTDRTAAKS-ALDELRAKRMRQQAPEGYRSRFKDAIGDGGSSGA 213
Query: 1475 GARDSSPAE--*LVPMPTLDSSESEGESKTDGRD-KSPEDNEMD 1353
G +D SP + P+ S++ E + D D + P +N+M+
Sbjct: 214 GNQDMSPPKHRSAASPPSDLSNDRESGGRMDSEDERFPGNNKME 257
Score = 39.3 bits (90), Expect(4) = 1e-97
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = -2
Query: 1738 RDDLLAERSTKVDDYRLKKKAWKTLSKVEMKSGKKS 1631
R+ +LAERSTK+DDY+LKK A + +K+E KS K+S
Sbjct: 124 RELILAERSTKIDDYKLKKMARASSAKME-KSQKES 158
>ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nelumbo
nucifera]
Length = 666
Score = 223 bits (569), Expect(3) = 1e-85
Identities = 157/377 (41%), Positives = 204/377 (54%), Gaps = 11/377 (2%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTG 1136
E K++TI R KL KWFMEPFFEE IVGCFV VGI + G +IY C+V+ + T
Sbjct: 279 EEIKSITIRRSKLAKWFMEPFFEELIVGCFVRVGIGMSRSGQSIYRLCMVKN-VDATDPN 337
Query: 1135 STIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCHLKGVQGL---V*EVEWCGSCMLTL 965
+ T C I + RW R V+ + EVE G M T
Sbjct: 338 KQYKLENRTTYKYLNC-IWGNESSAARWQMARVSDSAPLVEEFNDWLREVERHGGRMPTK 396
Query: 964 KEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDD 785
++++EK E IQK N++V SAA VKQMLQEKK+ +SRP N+AAEK++LR+E+EVA+S D+
Sbjct: 397 QDVSEKREAIQKTNTFVYSAATVKQMLQEKKTASSRPLNIAAEKERLRREMEVAESRRDE 456
Query: 784 AEVERIQAKLKELEEFLGSPSRRMQKQ*EL-----RMH*S*SQLILD*KLERNGVIFSQX 620
AEVERI+A+L+ELE + K L R + + K + +
Sbjct: 457 AEVERIRARLQELEAMSRQAKEKDSKAVRLAEMNKRNRAENFKNASELKPVNTSLKAGEA 516
Query: 619 XXXXXGIIMCRNQ---VEKMGMEQLSMEGIPGLLQVGAGDRNLVGPANGVEAGEMXXXXX 449
R++ V K G + G + + + G EAG
Sbjct: 517 GYDPFSRRWTRSRNYYVSKPGEGAPTANGEAAVASAVSVASSGTGARAAAEAGIAATAAA 576
Query: 448 XXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQGIEA 269
A K+VDT+APVDQGTESNSLH+FELPI LAGLQKF GP LGF RKQ IEA
Sbjct: 577 LEAAAGAGKLVDTSAPVDQGTESNSLHDFELPISLAGLQKFGGPQGAHLGFLGRKQRIEA 636
Query: 268 TIGYKLPVNDGRRHALT 218
T+G ++P NDGRRH+LT
Sbjct: 637 TVGCRVPENDGRRHSLT 653
Score = 92.8 bits (229), Expect(3) = 1e-85
Identities = 60/139 (43%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLD-GSDSMEDDS---DNPKFSKR 1936
MADL++L+LEAAGRT G + P R R+DSY D GSDS +DD D+P +S R
Sbjct: 1 MADLENLLLEAAGRTGGPGRNRHSRPPPSRRRRDDSYFDDGSDSKDDDDSDDDDPGYSGR 60
Query: 1935 KHLGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA------PSIGSHIYKDEED 1774
K GSQVPLKKR D H+K +GS +YKD+ D
Sbjct: 61 KPSGSQVPLKKRLDAHDKDDDRDSRDDDRDYDDDDDDEDRRAGSGDDSDVGSDLYKDDRD 120
Query: 1773 KEELGKMSELDREMIF*RR 1717
+EEL MSEL RE I R
Sbjct: 121 REELANMSELQREFILSER 139
Score = 52.0 bits (123), Expect(3) = 1e-85
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = -1
Query: 1661 QGGN--EVRKEVFPPPPFRGCPSLWCDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAG 1488
QGG ++ KE P R S + DK AAK +ALNEL K ++D EG+RK+RD +G
Sbjct: 156 QGGKKTDIMKETPPSVRVRSS-SRYADKLAAKDDALNELRNKRRNKQDPEGHRKLRD-SG 213
Query: 1487 VVGFGARDSSPA---E*LVPMPTLDSSESEGESKTDGRD 1380
G GAR SP L SS+S+ +S + RD
Sbjct: 214 RGGLGARGGSPVRRRSILTAASPSSSSQSDSQSGSHSRD 252
>ref|XP_011468358.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 625
Score = 213 bits (541), Expect(3) = 2e-79
Identities = 149/369 (40%), Positives = 197/369 (53%), Gaps = 3/369 (0%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTG 1136
E K +TI R +L KW MEPFFEE IVGCFV VGI T G IY C VR + +
Sbjct: 270 EDIKEITIRRSRLAKWLMEPFFEELIVGCFVRVGIGKTKSGRPIYRLCSVRN--VDSSDP 327
Query: 1135 STIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCHL---KGVQGLV*EVEWCGSCMLTL 965
++ T+ + + + RW L + V EVE G + +
Sbjct: 328 DRQYKLENKTTHKYLNVVWGNENSAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSK 387
Query: 964 KEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDD 785
+++ EK E I+K N++V SA VKQM+QEKKS +SRP N+A EKD+LR+E+E+A+S HDD
Sbjct: 388 EDVLEKKEAIKKTNTFVYSAETVKQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDD 447
Query: 784 AEVERIQAKLKELEEFLGSPSRRMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQXXXXXX 605
AEVERI+A+L++LE S + + M+ + R +
Sbjct: 448 AEVERIKARLEQLEARRQSQGKDSKAVRLAEMN----------RKNRVDNFYYVSKPDEQ 497
Query: 604 GIIMCRNQVEKMGMEQLSMEGIPGLLQVGAGDRNLVGPANGVEAGEMXXXXXXXXXXXAR 425
N V + ++ G G++ V AG L A +EA A
Sbjct: 498 KDDAEANAVAAESLAEVETNGTGGVVAVRAG---LEATAAALEAAA-----------GAG 543
Query: 424 KMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQGIEATIGYKLPV 245
K++DT APVDQGT SN LHNFELPI LA LQKF GP Q GF ARKQ IEAT+G ++P
Sbjct: 544 KLIDTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPE 603
Query: 244 NDGRRHALT 218
+DGRRHALT
Sbjct: 604 DDGRRHALT 612
Score = 89.0 bits (219), Expect(3) = 2e-79
Identities = 60/130 (46%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTS-GH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNPK-FSKRK 1933
MADLDDL+LEAAGRTS G R + R R+DSY DG SDS DDSD+ + ++ RK
Sbjct: 1 MADLDDLLLEAAGRTSSGRKSRHSHSSSKRR--RDDSYSDGGSDSRGDDSDDGRGYASRK 58
Query: 1932 HLGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA--PSIGSHIYKDEEDKEELG 1759
GSQVPLKKR DP E + +GS +YKDE+D+ +L
Sbjct: 59 PSGSQVPLKKRLDPSEVDDERDSQDEGDYNDSGSDRGGESNESDVGSDLYKDEDDRRKLA 118
Query: 1758 KMSELDREMI 1729
+MSEL RE+I
Sbjct: 119 EMSELQRELI 128
Score = 46.2 bits (108), Expect(3) = 2e-79
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = -1
Query: 1640 KEVFPPPPFRGCPSLW--CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTA-GVVGFGA 1470
++V PP P S D+ AAK +ALNEL AK +KQ+D E +RK+RD + G VG
Sbjct: 158 RKVTPPLPSSRVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKN 217
Query: 1469 RDSSPAE*LVPMPTLDSSESEGESKTDGRDK-SPEDNEMD 1353
+ + + SS+S+ ES++ D+ S D+ +D
Sbjct: 218 FSHTIKKSFSAVRRSSSSQSDSESRSHSDDEGSSADDAID 257
>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 [Fragaria vesca
subsp. vesca]
Length = 657
Score = 197 bits (500), Expect(3) = 3e-74
Identities = 149/385 (38%), Positives = 202/385 (52%), Gaps = 19/385 (4%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTG 1136
E K +TI R +L KW MEPFFEE IVGC V VGI T G IY C V + +
Sbjct: 270 EDIKEITIRRSRLAKWLMEPFFEELIVGCCVRVGIGKTKSGRPIYRLCSV--CNVDSSDP 327
Query: 1135 STIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCHL---KGVQGLV*EVEWCGSCMLTL 965
++ T+ + + + RW L + V EVE G + +
Sbjct: 328 DRQYKLENKTTHKYLNVVWGNENSAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSK 387
Query: 964 KEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDD 785
+++ EK E I+K N++V SA VKQM+QEKKS +SRP N+A EKD+LR+E+E+A+S HDD
Sbjct: 388 EDVLEKKEAIKKTNTFVYSAKTVKQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDD 447
Query: 784 AEVERIQAK---LKELEEFLGSPSR-----RMQKQ*ELRMH*S*SQLILD*KLERNGVI- 632
AEVERI+A+ L+ ++ G S+ M ++ + + S L K + G+
Sbjct: 448 AEVERIKARLEQLEARQQSQGKDSKAVRLAEMNRKNRVDNFKNASGL----KPVKTGLKA 503
Query: 631 -------FSQXXXXXXGIIMCRNQVEKMGMEQLSMEGIPGLLQVGAGDRNLVGPANGVEA 473
FS+ + + +K E ++ L +V + N G V A
Sbjct: 504 GEAGYDPFSRRWTRSRNYYVSKPDEQKDDAEANAVAA-ESLAEV---ETNGTGGVVAVRA 559
Query: 472 GEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFS 293
G A K++DT APVDQGT SN LHNFELPI LA LQKF GP Q GF
Sbjct: 560 GLEATAAALEAAAGAGKLIDTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFM 619
Query: 292 ARKQGIEATIGYKLPVNDGRRHALT 218
ARKQ IEAT+G ++P +DGRRHALT
Sbjct: 620 ARKQRIEATVGVRVPEDDGRRHALT 644
Score = 88.2 bits (217), Expect(3) = 3e-74
Identities = 60/130 (46%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTS-GH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNPK-FSKRK 1933
MADLDDL+LEAAGRTS G R + R R+DSY DG SDS DDSD+ + ++ RK
Sbjct: 1 MADLDDLLLEAAGRTSSGRKSRHSHSSSKRR--RDDSYSDGGSDSRGDDSDDGRGYASRK 58
Query: 1932 HLGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA--PSIGSHIYKDEEDKEELG 1759
GSQVPLKKR DP E + +GS +YKDE D+ +L
Sbjct: 59 PSGSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLA 118
Query: 1758 KMSELDREMI 1729
+MSEL RE+I
Sbjct: 119 EMSELQRELI 128
Score = 45.4 bits (106), Expect(3) = 3e-74
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Frame = -1
Query: 1640 KEVFPPPPFRGCPSLW--CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTA-GVVGFGA 1470
++V PP P S D+ AAK +ALNEL AK +KQ+D E +RK+RD + G VG
Sbjct: 158 RKVTPPLPSSRVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKN 217
Query: 1469 RDSSPAE*LVPMPTLDSSESEGESKTDGRDK-SPEDNEMD 1353
+ + + SS+S+ ES++ D S D+ +D
Sbjct: 218 FSHTIKKSFSAVRRSSSSQSDSESRSHSDDDGSSADDAID 257
>ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293|gb|ACL52521.1| unknown
[Zea mays] gi|414878213|tpg|DAA55344.1| TPA: hypothetical
protein ZEAMMB73_654453 [Zea mays]
Length = 647
Score = 110 bits (274), Expect(4) = 5e-54
Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 7/195 (3%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K++T+ R KLVKWFMEPFF++ I GCFV +GI T G Y C+VR S
Sbjct: 268 KSITLRRSKLVKWFMEPFFDDLISGCFVRLGIGQTKNGTPRYRLCIVR-----NVDASDP 322
Query: 1126 WRTGQLTSG*TVCGIMR----PQQLGGRWL*FRTFCHLKGVQGL---V*EVEWCGSCMLT 968
R +L S T C + + RW + + + E E G+ + T
Sbjct: 323 DRNYKLESYST-CKYLNVVWDSEANAARWQMTQVSDSPPNEEEFKEWLQEAEKHGARIPT 381
Query: 967 LKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHD 788
+E+ +K E IQ+ ++V SAA V+QML+EK S RP N+AAEKD+LR E+E+A S +
Sbjct: 382 RQEVLDKKEAIQEAYNFVYSAATVQQMLREK-SAVRRPINIAAEKDRLRSELEMALSRRN 440
Query: 787 DAEVERIQAKLKELE 743
+AE ERI+ KLK L+
Sbjct: 441 EAEAERIRVKLKNLQ 455
Score = 93.2 bits (230), Expect(4) = 5e-54
Identities = 51/101 (50%), Positives = 64/101 (63%), Gaps = 5/101 (4%)
Frame = -2
Query: 505 NLVGPANG-----VEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLA 341
++V P+NG + G A K+ DTNAPVD GTESN +H FELPI L+
Sbjct: 534 SIVEPSNGDIKSKAQTGTSATTAAQVAAADAGKLTDTNAPVDLGTESNVMHTFELPISLS 593
Query: 340 GLQKFWGPTRVQLGFSARKQGIEATIGYKLPVNDGRRHALT 218
LQ+F G + G+ AR+Q IEAT+GYK+P NDGRRHALT
Sbjct: 594 ALQEFGGAKGLFDGYMARRQKIEATMGYKVPDNDGRRHALT 634
Score = 53.5 bits (127), Expect(4) = 5e-54
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = -1
Query: 731 QSKQKDAKAVRAENALELKPVNSRLKAREERCDLFSRKWMRLRNYYVSKP 582
++ + +A +NA ELKPVN+ LKA E D FSR+W R RNYY SKP
Sbjct: 471 EAMNRKNRADNFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYASKP 520
Score = 26.2 bits (56), Expect(4) = 5e-54
Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 237 EGDMH*L-LTVSDYKHRRGLL 178
+G H L L+VSDYK RRGLL
Sbjct: 627 DGRRHALTLSVSDYKRRRGLL 647
Score = 77.0 bits (188), Expect(2) = 5e-15
Identities = 56/135 (41%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Frame = -3
Query: 2100 ADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSDNPKFSKRKHLGS 1921
++LDDL+L+AAGRT + R RW S DG D +DDSD RK S
Sbjct: 4 SNLDDLLLQAAGRTGKNHSRPSNP----RWNSGGSGSDGFD--DDDSDAAPTYSRKKPSS 57
Query: 1920 QVPLKKRFDPHE------KXXXXXXXXXXXXXXXXXXXXXSAPSIGSHIYKDEEDKEELG 1759
QVPLKKR P + SAPS+GS +YKDE+DKE L
Sbjct: 58 QVPLKKRHQPEQGGRRGSGGWKDEDDEDEDGRRSGGEDSDSAPSVGSDLYKDEDDKERLE 117
Query: 1758 KMSELDREMIF*RRG 1714
MSEL REMI RG
Sbjct: 118 NMSELQREMILADRG 132
Score = 33.9 bits (76), Expect(2) = 5e-15
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = -2
Query: 1738 RDDLLAERSTKVDDYRLKKKAWKTLSKVEMKSGKK 1634
R+ +LA+R T++DDY+LK++A + SK + +K
Sbjct: 124 REMILADRGTRLDDYKLKQRARASSSKTDKVGARK 158
>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
gi|557088572|gb|ESQ29352.1| hypothetical protein
EUTSA_v10023338mg [Eutrema salsugineum]
Length = 644
Score = 132 bits (332), Expect(3) = 9e-54
Identities = 88/194 (45%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTG 1136
E K +TI R KL KW MEPFFEE IVGCFV VGI + G IY C+V+ + T
Sbjct: 267 EDIKDITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKNG-PIYRLCMVKN-VDATDPD 324
Query: 1135 STIWRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTL 965
T + T C I + RW + + + + + EVE M T
Sbjct: 325 KTYKLENKTTHKYLNC-IWGHESSAARWQMAMISDGYPLEEEYRQWIREVERTNGRMPTK 383
Query: 964 KEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDD 785
++++EK E I++INS+V SA VKQMLQEKKS + RP N+AAEKD+LRKE+EVA+ +D+
Sbjct: 384 QDISEKKEAIKRINSFVYSAETVKQMLQEKKSASVRPMNIAAEKDRLRKELEVAQIKNDE 443
Query: 784 AEVERIQAKLKELE 743
A VERI+AK+K+LE
Sbjct: 444 AGVERIKAKIKQLE 457
Score = 87.4 bits (215), Expect(3) = 9e-54
Identities = 46/90 (51%), Positives = 55/90 (61%)
Frame = -2
Query: 487 NGVEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRV 308
NGVEA E K++DT AP+ QG E N LHNFELP+ L LQK+ GP V
Sbjct: 546 NGVEATEAALEAAADAG----KLIDTRAPIGQGAEHNLLHNFELPLSLTALQKYGGPQGV 601
Query: 307 QLGFSARKQGIEATIGYKLPVNDGRRHALT 218
Q F ARKQ EAT+G ++ NDG+RH LT
Sbjct: 602 QKAFMARKQVTEATVGCRVAENDGKRHGLT 631
Score = 42.0 bits (97), Expect(3) = 9e-54
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Frame = -1
Query: 737 SRQSKQKDAKAV---------RAEN---ALELKPVNSRLKAREERCDLFSRKWMRLRNYY 594
SR+ K+ D KA+ RAEN A E+K + + LKA E D FSR+W R NYY
Sbjct: 459 SREKKEVDKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYY 518
Query: 593 VSK 585
K
Sbjct: 519 NGK 521
Score = 112 bits (281), Expect(2) = 1e-38
Identities = 89/228 (39%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLW--CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGA 1470
+KE P P RG S D+ AAK +ALNEL AK MKQ++ RK+RD A G G+
Sbjct: 156 KKETQPLPASRGVRSSARSADRAAAKDDALNELRAKRMKQQEPASLRKLRD-ASKGGSGS 214
Query: 1469 RD--SSPAE*LVPMPTLDSSESEGESKTDGRDK--------SPED-NEMD*FRGYNLI*I 1323
RD S + L +SS+S+ +S++ D+ S +D +++ F I I
Sbjct: 215 RDFSSMKRKPLASSNLSNSSQSDSDSRSQSDDEGSNGGMVDSDDDRSDVPTFEDIKDITI 274
Query: 1322 *Y*SMQSYDHS*VEAGEMVHGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDATDP 1143
+ + E L+ G R+ R + RLC + KNVDATDP
Sbjct: 275 RRSKLAKW------LMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMV-----KNVDATDP 323
Query: 1142 DRQYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSRIGLR 999
D+ Y LEN+TTHK+LNC+W +E+SAARWQMAMISD PLE R +R
Sbjct: 324 DKTYKLENKTTHKYLNCIWGHESSAARWQMAMISDGYPLEEEYRQWIR 371
Score = 77.4 bits (189), Expect(2) = 1e-38
Identities = 52/131 (39%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSDNPK-FSKRKHL 1927
M DLDDL+LEAAGRT+ R + + P RE SY DG DDSD + ++ RK
Sbjct: 1 MVDLDDLLLEAAGRTNAP-GRSRHSHPPSSRRREGSYSDGGSDSRDDSDEERGYASRKPS 59
Query: 1926 GSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSAPS-IGSHIYKDEEDKEELGKMS 1750
GSQVPLKKR + + S S G +YK+EED+++L M+
Sbjct: 60 GSQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMT 119
Query: 1749 ELDREMIF*RR 1717
E REMI R
Sbjct: 120 EFQREMILAER 130
>emb|CDY50211.1| BnaCnng18930D [Brassica napus]
Length = 529
Score = 127 bits (320), Expect(3) = 7e-53
Identities = 85/215 (39%), Positives = 117/215 (54%), Gaps = 24/215 (11%)
Frame = -2
Query: 1315 EVCKAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVR--------- 1163
E K +TI R KL KW MEPFFEE IVGCFV VGI + G IY C+V+
Sbjct: 149 EDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSG-PIYRLCMVKNVDAADPDK 207
Query: 1162 ---------------MWMLLTQTGSTIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCH 1028
W +T + W+ ++ G V ++ +W
Sbjct: 208 AYKLENKTTHKYLNVFWG--NETSAARWQMAMISDGHPV------EEEYRQW-------- 251
Query: 1027 LKGVQGLV*EVEWCGSCMLTLKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHN 848
+ EVE + + ++++EK E I++INS+V SA VKQMLQEKKS + RP N
Sbjct: 252 -------IREVERTNGRLPSKQDVSEKKEAIRRINSFVYSAETVKQMLQEKKSASVRPMN 304
Query: 847 VAAEKDQLRKEIEVAKSHHDDAEVERIQAKLKELE 743
VAAEKD+LRKE+E+A+S +D A VERI+AK+K+L+
Sbjct: 305 VAAEKDRLRKELEIAESKNDQAGVERIKAKIKQLD 339
Score = 90.1 bits (222), Expect(3) = 7e-53
Identities = 47/90 (52%), Positives = 57/90 (63%)
Frame = -2
Query: 487 NGVEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRV 308
NGVEA E K++DT AP+ QG E N +HNFELP+ LA LQK+ GP V
Sbjct: 431 NGVEATEAALEAAAEAG----KLIDTRAPIGQGAEHNLMHNFELPLSLAALQKYGGPQGV 486
Query: 307 QLGFSARKQGIEATIGYKLPVNDGRRHALT 218
Q F ARKQ EAT+G ++ VNDG+RH LT
Sbjct: 487 QKAFMARKQMTEATVGCRVVVNDGKRHGLT 516
Score = 40.8 bits (94), Expect(3) = 7e-53
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Frame = -1
Query: 740 ISRQSKQKDAKAV---------RAEN---ALELKPVNSRLKAREERCDLFSRKWMRLRNY 597
+SR K D KA+ RAEN A E+K + + LKA E D FSR+W R NY
Sbjct: 340 VSRNKKGVDKKALKLYEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNY 399
Query: 596 YVSK 585
Y K
Sbjct: 400 YNGK 403
Score = 103 bits (257), Expect = 5e-19
Identities = 85/226 (37%), Positives = 114/226 (50%), Gaps = 11/226 (4%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLW--CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGA 1470
+K+ P P RG S D+ AAK +ALNEL AK MKQ+D +K+RD A G G+
Sbjct: 41 KKDTQPLPASRGVRSSARSADRAAAKDDALNELRAKRMKQQDPAALKKLRD-ASKGGSGS 99
Query: 1469 RDSSPAE*LVPMPT--------LDSSESEGESKTDGRDKSPED-NEMD*FRGYNLI*I*Y 1317
RD S + P+ + D S+S+ E G S +D +++ + I I
Sbjct: 100 RDFSSMK-RKPLASSKFSSSSDSDRSQSDDEGSNGGMVDSDDDRSDVPTYEDIKEITIRR 158
Query: 1316 *SMQSYDHS*VEAGEMVHGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDATDPDR 1137
+ + E L+ G R+ R + RLC + KNVDA DPD+
Sbjct: 159 SKLAKW------LMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMV-----KNVDAADPDK 207
Query: 1136 QYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSRIGLR 999
Y LEN+TTHK+LN W NE SAARWQMAMISD P+E R +R
Sbjct: 208 AYKLENKTTHKYLNVFWGNETSAARWQMAMISDGHPVEEEYRQWIR 253
>ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
bretschneideri]
Length = 657
Score = 213 bits (542), Expect = 5e-52
Identities = 156/381 (40%), Positives = 210/381 (55%), Gaps = 18/381 (4%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KWFMEPFFEE IVGCFV VGI + G AIY C+VR +
Sbjct: 274 KEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-AIYRLCMVRN--VDASDPDRQ 330
Query: 1126 WRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTLKEM 956
++ T+ + + + RW + + + + + EVE G + + +++
Sbjct: 331 YKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWIREVERSGGRLPSKEDV 390
Query: 955 TEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDDAEV 776
EK E I+K NS+V SAA VKQM+QEKKS +SRP N+A EKD+LR+E+EVAKS DDAEV
Sbjct: 391 LEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDRLRRELEVAKSKQDDAEV 450
Query: 775 ERIQAKLKELE---EFLGSPSR-----RMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQX 620
ERIQ +L++LE + G S+ M ++ + + S+L K + G+ +
Sbjct: 451 ERIQTRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASEL----KPKNIGLKAGEA 506
Query: 619 XXXXXGIIMCRNQ---VEKMGMEQLSMEGIP----GLLQVGAGDRNLVGPANGVEAGEMX 461
R++ V K G ++ E I L + + +VG V AG
Sbjct: 507 GYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALADIESNGTAVVG---AVRAGMAA 563
Query: 460 XXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQ 281
A K++DT+APVD GTESN HNFELPI LA LQKF GP Q GF ARKQ
Sbjct: 564 TAAALEAAAGAGKLIDTSAPVDFGTESNLKHNFELPISLAALQKFGGPQGAQKGFLARKQ 623
Query: 280 GIEATIGYKLPVNDGRRHALT 218
IEAT+G ++P NDGRRHALT
Sbjct: 624 RIEATVGCQVPENDGRRHALT 644
Score = 104 bits (259), Expect(2) = 2e-36
Identities = 84/231 (36%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLW-CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGAR 1467
RKE P P R S D+ AAK +ALNEL AK +KQ+D E +RK+RD + +R
Sbjct: 158 RKETPPLPSSRVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGGSSSSR 217
Query: 1466 DSSPAE*LVPMPTLDSSESEGESKTDGRDKSPEDN--------EMD*FRGYNLI*I*Y*S 1311
S T S +S +D R +S +D + D R L +
Sbjct: 218 SFSHLN--RKSFTAVGRSSSSQSDSDSRSRSEDDGSSGDDAMIDSDDERSEGL------T 269
Query: 1310 MQSYDHS*VEAGEMV-------HGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDA 1152
+ ++ L+ G R+ R + RLC + +NVDA
Sbjct: 270 FDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGAIYRLCMV-----RNVDA 324
Query: 1151 TDPDRQYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSRIGLR 999
+DPDRQY LEN+TTHK+LN VW NE SAARWQMAMISD PLE + +R
Sbjct: 325 SDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWIR 375
Score = 78.2 bits (191), Expect(2) = 2e-36
Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNPK-FSKRKH 1930
MA+L++L+LEAAGRTS + + + R R SY DG SDS DDSD+ + ++ RK
Sbjct: 1 MAELENLLLEAAGRTSSS-GKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA--PSIGSHIYKDEEDKEELGK 1756
G QVPLKKR DP E + +GS +YKDE+D+ +L +
Sbjct: 60 SGPQVPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119
Query: 1755 MSELDREMIF*RR 1717
MSEL RE+I R
Sbjct: 120 MSELQRELILSER 132
>ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
bretschneideri]
Length = 657
Score = 211 bits (536), Expect = 2e-51
Identities = 154/381 (40%), Positives = 211/381 (55%), Gaps = 18/381 (4%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KWFMEPFFEE IVGCFV VGI + G AIY C+VR +
Sbjct: 274 KEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSG-AIYRLCMVRN--VDASDPDRQ 330
Query: 1126 WRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTLKEM 956
++ T+ + + + RW + + + + + EVE G + + +++
Sbjct: 331 YKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWIREVERSGGRLPSKEDV 390
Query: 955 TEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDDAEV 776
EK E I+K NS+V SAA VKQM+QEKKS +SRP N+A EKD+LR+E+EVAKS DDAEV
Sbjct: 391 LEKKEAIKKTNSFVYSAATVKQMIQEKKSASSRPLNIALEKDRLRRELEVAKSKQDDAEV 450
Query: 775 ERIQAKLKELE---EFLGSPSR-----RMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQX 620
ERIQ +L++LE + G S+ M ++ + + S+L K + G+ +
Sbjct: 451 ERIQTRLQQLEARRQSQGKDSKAIRLAEMNRKNRVENFKNASEL----KPKNIGLKAGEA 506
Query: 619 XXXXXGIIMCRNQ---VEKMGMEQLSMEGIP----GLLQVGAGDRNLVGPANGVEAGEMX 461
R++ V K G ++ E I L+ + + +VG V AG
Sbjct: 507 GYDPFSRRWTRSRNYYVSKPGEQKEEAEAIAVADGALVDIESNGTAVVG---AVRAGMAA 563
Query: 460 XXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQ 281
A K++DT+AP+D GTESN H+FELPI LA LQKF GP Q GF ARKQ
Sbjct: 564 TAAALEAAAGAGKLIDTSAPLDFGTESNLKHDFELPISLAALQKFGGPQGAQKGFLARKQ 623
Query: 280 GIEATIGYKLPVNDGRRHALT 218
IEAT+G ++P NDGRRHALT
Sbjct: 624 RIEATVGCQVPENDGRRHALT 644
Score = 104 bits (259), Expect(2) = 2e-36
Identities = 84/231 (36%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLW-CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGAR 1467
RKE P P R S D+ AAK +ALNEL AK +KQ+D E +RK+RD + +R
Sbjct: 158 RKETPPLPSSRVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGGSSSSR 217
Query: 1466 DSSPAE*LVPMPTLDSSESEGESKTDGRDKSPEDN--------EMD*FRGYNLI*I*Y*S 1311
S T S +S +D R +S +D + D R L +
Sbjct: 218 SFSHLN--RKSFTAVGRSSSSQSDSDSRSRSEDDGSSGDDAMIDSDDERSEGL------T 269
Query: 1310 MQSYDHS*VEAGEMV-------HGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDA 1152
+ ++ L+ G R+ R + RLC + +NVDA
Sbjct: 270 FDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGAIYRLCMV-----RNVDA 324
Query: 1151 TDPDRQYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSRIGLR 999
+DPDRQY LEN+TTHK+LN VW NE SAARWQMAMISD PLE + +R
Sbjct: 325 SDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWIR 375
Score = 78.2 bits (191), Expect(2) = 2e-36
Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNPK-FSKRKH 1930
MA+L++L+LEAAGRTS + + + R R SY DG SDS DDSD+ + ++ RK
Sbjct: 1 MAELENLLLEAAGRTSSS-GKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA--PSIGSHIYKDEEDKEELGK 1756
G QVPLKKR DP E + +GS +YKDE+D+ +L +
Sbjct: 60 SGPQVPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119
Query: 1755 MSELDREMIF*RR 1717
MSEL RE+I R
Sbjct: 120 MSELQRELILSER 132
>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
gi|462413781|gb|EMJ18830.1| hypothetical protein
PRUPE_ppa002666mg [Prunus persica]
Length = 646
Score = 209 bits (533), Expect = 5e-51
Identities = 153/381 (40%), Positives = 211/381 (55%), Gaps = 18/381 (4%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KW MEPFFEE IVGCFV VGI + G IY C+VR +
Sbjct: 263 KEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSG-PIYRLCMVRN--VDASDPDRK 319
Query: 1126 WRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTLKEM 956
++ T+ + + + RW + + + + V EVE G + + +++
Sbjct: 320 YKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDV 379
Query: 955 TEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDDAEV 776
EK E I+KIN++V SAA VKQM++EKKS +SRP N+A EKD+LR+E+EVA+S HDDAEV
Sbjct: 380 LEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEV 439
Query: 775 ERIQAKLKELE---EFLGSPSR-----RMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQX 620
ERI+ +L++LE + G S+ M ++ + + S+L K + G+ +
Sbjct: 440 ERIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNASEL----KPVKTGLKAGEA 495
Query: 619 XXXXXGIIMCRNQ---VEKMGMEQLSMEGI----PGLLQVGAGDRNLVGPANGVEAGEMX 461
R++ V K G ++ E I L + + +VG V AG
Sbjct: 496 GYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALADIESNGTAVVG---AVRAGMAA 552
Query: 460 XXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQ 281
A K++DT+APVD GTESN +HNFELPI LA LQKF GP Q GF ARKQ
Sbjct: 553 TAAALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQ 612
Query: 280 GIEATIGYKLPVNDGRRHALT 218
IEAT+G ++P NDGRRHALT
Sbjct: 613 RIEATVGCRVPENDGRRHALT 633
Score = 103 bits (258), Expect(2) = 9e-37
Identities = 85/228 (37%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLW-CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTA-GVVGFGA 1470
+KE P P R S D+ AAK +ALNEL AK +KQ+D E +RK+RD + G G +
Sbjct: 148 KKETPPLPSSRVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRS 207
Query: 1469 RDSSPAE*LVPMPTLDSSESEGESKTDGRD--KSPEDNEMD---------*FRGYNLI*I 1323
+ + SS+S+ +S++ D + ED MD F I I
Sbjct: 208 FSHMTRKSFTAVGRSSSSQSDSDSRSHSEDDGSTGEDPMMDSDDERSEGLTFDDIKEITI 267
Query: 1322 *Y*SMQSYDHS*VEAGEMVHGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDATDP 1143
+ + E L+ G R+ R + RLC + +NVDA+DP
Sbjct: 268 RRSKLAKW------LMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMV-----RNVDASDP 316
Query: 1142 DRQYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSRIGLR 999
DR+Y LEN+TTHK+LN VW NE SAARWQMAMISD PLE + +R
Sbjct: 317 DRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWVR 364
Score = 80.1 bits (196), Expect(2) = 9e-37
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNPK-FSKRKH 1930
MADL++L+LEAAGRTS + + + R R SY DG SDS DDSD+ + ++ RK
Sbjct: 1 MADLENLLLEAAGRTSSA-GKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA--PSIGSHIYKDEEDKEELGK 1756
G+QVPLKKR DP E + +GS +YKDE+D+ +L +
Sbjct: 60 SGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119
Query: 1755 MSELDREMI 1729
MSEL RE+I
Sbjct: 120 MSELQRELI 128
>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 656
Score = 206 bits (525), Expect = 5e-50
Identities = 150/377 (39%), Positives = 205/377 (54%), Gaps = 14/377 (3%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KWFMEPFFEE IVGCFV VGI + G IY C+V+ +
Sbjct: 275 KEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTG-PIYRLCMVKN--VDASEPDRQ 331
Query: 1126 WRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTLKEM 956
++ T+ + + + RW + + + + V EV+ G M + +++
Sbjct: 332 YKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDV 391
Query: 955 TEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDDAEV 776
EK + IQK ++V SAA VKQMLQEKKS ++RP NVAAEKD+LR+E+E+A+S HD+AEV
Sbjct: 392 LEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEV 451
Query: 775 ERIQAKLKELEEFLGSPSR--------RMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQX 620
ERI+ +L+ELE + + M ++ + S+L K G+ +
Sbjct: 452 ERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKNASEL----KPVNIGLKAGEA 507
Query: 619 XXXXXGIIMCRNQ---VEKMGMEQLSMEGIPGLLQVGAGDRNLVGPANGVEAGEMXXXXX 449
R++ K G + + I GAG N G EAG +
Sbjct: 508 GYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGS-NATGAPVTAEAGMVATAAA 566
Query: 448 XXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQGIEA 269
A K+VDT+APVDQGTESN LHNFELPI LA LQK+ G Q GF ARKQ IE+
Sbjct: 567 LEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIES 626
Query: 268 TIGYKLPVNDGRRHALT 218
T+G+++ NDGRRHALT
Sbjct: 627 TVGFRVSENDGRRHALT 643
Score = 96.3 bits (238), Expect = 9e-17
Identities = 74/205 (36%), Positives = 105/205 (51%), Gaps = 19/205 (9%)
Frame = -1
Query: 1580 AAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGARDSSPAE*LVPMPT--LDSSESE 1407
+AK++ALNEL AK +KQ+D E +R++R+ + G R SP + T SS SE
Sbjct: 179 SAKNDALNELRAKRLKQQDPEAHRRLREASR--NAGPRHFSPPKRKTFTSTSLSSSSHSE 236
Query: 1406 GESKTDGRDK----------SPEDNEMD*FRGYNLI*I*Y*SMQSYDHS*VEAGEMV--- 1266
ES++ D+ S +D + G S Q + ++
Sbjct: 237 SESRSHSDDEGSTGDGGIADSDDDRALAGSEGP--------SFQDIKEITIRRSKLAKWF 288
Query: 1265 ----HGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDATDPDRQYNLENRTTHKWL 1098
L+ G R+ R + RLC + KNVDA++PDRQY LEN+TT+K+L
Sbjct: 289 MEPFFEELIVGCFVRVGIGRSKTGPIYRLCMV-----KNVDASEPDRQYKLENKTTYKYL 343
Query: 1097 NCVWDNEASAARWQMAMISDILPLE 1023
N VW NE+SAARWQMAM+SD P+E
Sbjct: 344 NVVWGNESSAARWQMAMVSDSAPME 368
Score = 87.0 bits (214), Expect = 5e-14
Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNP-KFSKRKH 1930
MADL++L+LEAAGRT G R + +LP R + +Y DG SDS +DDSD+ ++ RK
Sbjct: 1 MADLENLLLEAAGRT-GTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSAP--SIGSHIYKDEEDKEELGK 1756
GSQVPLKKR DP E+ S+ +IG +YKDE+D+ +L +
Sbjct: 60 SGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSE 119
Query: 1755 MSELDREMI 1729
M+EL REMI
Sbjct: 120 MTELQREMI 128
>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
gi|561032714|gb|ESW31293.1| hypothetical protein
PHAVU_002G226300g [Phaseolus vulgaris]
Length = 654
Score = 206 bits (524), Expect = 6e-50
Identities = 152/388 (39%), Positives = 204/388 (52%), Gaps = 25/388 (6%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVV---------RMWM 1154
K +TI R KL KWFMEPFFEE IVGCFV VGI + G IY C+V R +
Sbjct: 276 KEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTG-PIYRLCMVKNVDASEPDRQYK 334
Query: 1153 LLTQTG----STIWRTGQLTSG*TVCGIMRPQQLGGRWL*FRTFCHLKGVQGLV*EVEWC 986
L +T + +W + + + L + + V EV+
Sbjct: 335 LENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEF------------KQWVKEVDRS 382
Query: 985 GSCMLTLKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEV 806
G M T +++ EK + IQK ++V SAA VKQMLQEKKS ++RP NVAAEKD+LR+E+E+
Sbjct: 383 GGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEI 442
Query: 805 AKSHHDDAEVERIQAKLKELEEFLGSPSR--------RMQKQ*ELRMH*S*SQLILD*KL 650
A+S HD+AEV+RI+A+L+ELE + + M ++ + S+L K
Sbjct: 443 AQSKHDEAEVDRIKARLQELEASRHAKQKDAKALKLAEMNRKNRFENFKNASEL----KP 498
Query: 649 ERNGVIFSQXXXXXXGIIMCRNQ----VEKMGMEQLSMEGIPGLLQVGAGDRNLVGPANG 482
G+ + R++ EK S+ GI V N G
Sbjct: 499 VNTGLKAGEAGYDPFSRRWTRSRNYYTGEKAAAGNNSVNGI-----VAGPGTNSTGAPVT 553
Query: 481 VEAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQL 302
EAG + A K+VDT+APVDQGTESN LHNFELPI LA LQK+ G Q
Sbjct: 554 AEAGLVATAAALEAAADAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQA 613
Query: 301 GFSARKQGIEATIGYKLPVNDGRRHALT 218
GF ARKQ IE+T+G+++ NDGRRH+LT
Sbjct: 614 GFMARKQRIESTVGFRVLENDGRRHSLT 641
Score = 98.2 bits (243), Expect = 2e-17
Identities = 75/205 (36%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Frame = -1
Query: 1580 AAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGARDSSP--AE*LVPMPTLDSSESE 1407
+AK++ALNEL AK +KQ+D E +RK+R+ + G R SP + SS SE
Sbjct: 180 SAKNDALNELRAKRLKQQDPEAHRKLREASR--NAGPRHFSPPKRKPFTSTSLSSSSHSE 237
Query: 1406 GESKTDGRDK----------SPEDNEMD*FRGYNLI*I*Y*SMQSYDHS*VEAGEMV--- 1266
ES++ D+ S +D + G S Q + ++
Sbjct: 238 SESRSHSDDEGSTGDGGIGDSDDDRALTGSEGP--------SFQDIKEITIRRSKLAKWF 289
Query: 1265 ----HGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDATDPDRQYNLENRTTHKWL 1098
L+ G R+ R + RLC + KNVDA++PDRQY LEN+TT+K+L
Sbjct: 290 MEPFFEELIVGCFVRVGIGRSKTGPIYRLCMV-----KNVDASEPDRQYKLENKTTYKYL 344
Query: 1097 NCVWDNEASAARWQMAMISDILPLE 1023
N VW NE+SAARWQMAM+SD PLE
Sbjct: 345 NVVWGNESSAARWQMAMVSDSAPLE 369
Score = 87.0 bits (214), Expect = 5e-14
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNP-KFSKRKH 1930
MADL++L+LEAAGRT G R + +LP R + +Y DG SDS +DDSD+ ++ RK
Sbjct: 1 MADLENLLLEAAGRT-GTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA---PSIGSHIYKDEEDKEELG 1759
GSQVPLKKR DP E+ + +IG +YKDE+D+ +L
Sbjct: 60 SGSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLS 119
Query: 1758 KMSELDREMI 1729
+M+EL REMI
Sbjct: 120 EMTELQREMI 129
>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
gi|557524836|gb|ESR36142.1| hypothetical protein
CICLE_v10028000mg [Citrus clementina]
Length = 643
Score = 206 bits (524), Expect = 6e-50
Identities = 155/387 (40%), Positives = 202/387 (52%), Gaps = 24/387 (6%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KWFMEPFFEE IVGCFV VGI + G IY C+VR +T
Sbjct: 264 KEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNG-PIYRLCMVR------NVDATE 316
Query: 1126 WRTGQLTSG*TVCGIMRP----QQLGGRWL*FRTFCHL---KGVQGLV*EVEWCGSCMLT 968
T C + + RW + + + EVE G M +
Sbjct: 317 PDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNGGRMPS 376
Query: 967 LKEMTEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHD 788
+++ EK E IQKIN++V SAA VKQMLQEKKS +SRP NVAAEKD+LR+E+EVA+S HD
Sbjct: 377 KQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHD 436
Query: 787 DAEVERIQAKLKELEEFLGSPSRRMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQXXXXX 608
D ++ERI+ +L+ELE S +++ +R+ ++ R + +
Sbjct: 437 DVDMERIKKRLQELE---ASRDSKVKDAKAIRLA----------EMNRKNRVENFKNASE 483
Query: 607 XGIIMCRNQVEKMGMEQLSME---------GIPG--LLQVGAGDRNLV-GPANGV----- 479
+ + + G + S PG + GD+N V G ANG
Sbjct: 484 LKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKNGVPGGANGEEGATG 543
Query: 478 EAGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLG 299
E G A K+VDTNAP+D GTESN LH+FEL I L L+KF GP V G
Sbjct: 544 EVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAG 603
Query: 298 FSARKQGIEATIGYKLPVNDGRRHALT 218
F ARKQ IEAT+G ++P NDGRRHALT
Sbjct: 604 FMARKQRIEATVGCQVPENDGRRHALT 630
Score = 102 bits (255), Expect(2) = 4e-33
Identities = 88/234 (37%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Frame = -1
Query: 1640 KEVFPPPPFRGC--PSLWCDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGAR 1467
KE P P R + D+ AAK +ALNEL AK +KQ+D E +R++RD A G G+R
Sbjct: 146 KETPPLPSSRSARLAARSADRAAAKDDALNELRAKRLKQQDPEAHRRLRD-ASRGGSGSR 204
Query: 1466 DSSPA--E*LVPMPTLDSSESEGESKTDGRDKSP------EDNEMD*FRGYNLI*I*Y*S 1311
SP + P SS+SE ES++ D+ D++ D G
Sbjct: 205 VLSPVKRKAFTPAGLSSSSQSESESRSHSDDEGSTGDGGMADSDDDGAPGS--------G 256
Query: 1310 MQSYD--------HS*VEAG--EMVHGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKN 1161
+YD S + E L+ G R+ R + RLC + +N
Sbjct: 257 RPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMV-----RN 311
Query: 1160 VDATDPDRQYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSRIGLR 999
VDAT+PDR Y LENRTT K+LN W NE+SAARWQMAM+SD PLE + LR
Sbjct: 312 VDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLR 365
Score = 68.9 bits (167), Expect(2) = 4e-33
Identities = 50/130 (38%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDGSDSMEDDSD-NPKFSKRKHL 1927
MADL++L+LEAAGRT+ R + + + RE SY GSDS +DDSD N + RK
Sbjct: 1 MADLENLLLEAAGRTNSA-GRNRHSASSSKRRREGSY-SGSDSRDDDSDDNRGYGSRKPS 58
Query: 1926 GSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSAPSIGSHIYKDEEDKEELGKMSE 1747
GSQVPLKKR DP E+ + +E D + G+M+E
Sbjct: 59 GSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDS--------SNESDDDNHGQMTE 110
Query: 1746 LDREMIF*RR 1717
L+REM+ R
Sbjct: 111 LEREMMIFER 120
>ref|XP_004505022.1| PREDICTED: protein RTF1 homolog [Cicer arietinum]
gi|502142571|ref|XP_004505023.1| PREDICTED: protein RTF1
homolog [Cicer arietinum]
Length = 658
Score = 206 bits (524), Expect = 6e-50
Identities = 148/377 (39%), Positives = 209/377 (55%), Gaps = 14/377 (3%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KWFMEPFFEE IVGCFV VGI + G IY C+V+ + +
Sbjct: 277 KEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTG-PIYRLCMVKN--VDSSDPDRQ 333
Query: 1126 WRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTLKEM 956
++ T+ + + + RW + +F + + V EVE G M T +++
Sbjct: 334 YKLENRTTHKYLNVVWGNESSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDV 393
Query: 955 TEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDDAEV 776
EK + IQKI ++V SA VKQMLQEKKS++SRP NVAAEKD+LR+E+E+A+S +D+AEV
Sbjct: 394 LEKKQAIQKIITFVYSADTVKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEV 453
Query: 775 ERIQAKLKELEEFLGSPSR--------RMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQX 620
ERI+ +++ELE + + M ++ + S+L + G+ +
Sbjct: 454 ERIKTRVQELEASRHAKVKDAKALKLAEMNRKNRFENFKNASEL----RPVNIGLKAGEA 509
Query: 619 XXXXXGIIMCRNQ---VEKMGMEQLSMEGIPGLLQVGAGDRNLVGPANGVEAGEMXXXXX 449
R++ V K G + + + +L AG N+ G E+G +
Sbjct: 510 GYDPFSRRWTRSRNYYVAKPGEKAAARKNTTNVLVADAGS-NITGVPVTAESGVVATAAA 568
Query: 448 XXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQGIEA 269
A K+VDT+APVDQGTESN LHNFELPI LA L K+ G Q GF ARKQ +EA
Sbjct: 569 LEAAADAGKLVDTSAPVDQGTESNFLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEA 628
Query: 268 TIGYKLPVNDGRRHALT 218
T+G+++ NDGRRH LT
Sbjct: 629 TVGFRVSENDGRRHVLT 645
Score = 96.7 bits (239), Expect = 7e-17
Identities = 75/204 (36%), Positives = 99/204 (48%), Gaps = 18/204 (8%)
Frame = -1
Query: 1580 AAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGARDSSPAE*LVPMPTLDS------ 1419
+AK+ ALNEL AK +KQ+D E R++R+ + G R S P L S
Sbjct: 181 SAKNVALNELRAKRLKQQDPEARRRLREASRNSG-PRRFSPPKRKSFTSANLSSSSHSDS 239
Query: 1418 -----SESEGESKTDGRDKSPEDNEMD*FRGYNLI*I*Y*SMQSYDHS*VEAGEMV---- 1266
S+ EG + G S +D + G S Q + ++
Sbjct: 240 DSRSHSDDEGSTGDGGIADSDDDRALSGSEGP--------SFQDIKEITIRRSKLAKWFM 291
Query: 1265 ---HGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDATDPDRQYNLENRTTHKWLN 1095
L+ G R+ R + RLC + KNVD++DPDRQY LENRTTHK+LN
Sbjct: 292 EPFFEELIVGCFVRVGIGRSKTGPIYRLCMV-----KNVDSSDPDRQYKLENRTTHKYLN 346
Query: 1094 CVWDNEASAARWQMAMISDILPLE 1023
VW NE+SAARWQMAM+SD PLE
Sbjct: 347 VVWGNESSAARWQMAMVSDSFPLE 370
Score = 94.0 bits (232), Expect = 4e-16
Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLD-GSDSMEDDSDNP-KFSKRKH 1930
MADL++L+LEAAGRT G R + ++P R R+ SY D GSDS +DDSD+ + RK
Sbjct: 1 MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA---PSIGSHIYKDEEDKEELG 1759
GSQVPLKKR DP E+ + +IG +YKDE+D+ +L
Sbjct: 61 SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120
Query: 1758 KMSELDREMI 1729
+MSEL REMI
Sbjct: 121 EMSELQREMI 130
>ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Gossypium
raimondii] gi|763802543|gb|KJB69481.1| hypothetical
protein B456_011G025800 [Gossypium raimondii]
gi|763802544|gb|KJB69482.1| hypothetical protein
B456_011G025800 [Gossypium raimondii]
gi|763802545|gb|KJB69483.1| hypothetical protein
B456_011G025800 [Gossypium raimondii]
Length = 660
Score = 205 bits (522), Expect = 1e-49
Identities = 153/386 (39%), Positives = 209/386 (54%), Gaps = 23/386 (5%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KW MEPFFEE IVGCFV VGI + G AIY C+VR + T T
Sbjct: 278 KEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKTG-AIYRLCMVRN-VDATDPDRT- 334
Query: 1126 WRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTLKEM 956
++ T+ + + + RW + + + + L+ EVE G M + +++
Sbjct: 335 YKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPLEEEFRQLIREVERSGGRMPSKQDV 394
Query: 955 TEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDDAEV 776
EK E +QK ++V SAA VKQMLQEKKS++SRP NVAAEKD+LR+++E+A+S HDD EV
Sbjct: 395 LEKKEALQKAKTFVYSAATVKQMLQEKKSSSSRPLNVAAEKDRLRRDLEIAQSKHDDVEV 454
Query: 775 ERIQAKLKELEEFLGSPSRRMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQXXXXXXGII 596
ERI+ +L++LE SR+ Q++ ++ + ++ R + + +
Sbjct: 455 ERIKKRLQQLE-----ASRQSQEK--------DAKAVRLAEMNRKNRVENFKNASGLKPV 501
Query: 595 MCRNQVEKMGMEQLSME----------GIPG--LLQVGAGDRN-LVGPANG-------VE 476
+ + G + S PG V GD N +G NG E
Sbjct: 502 NTGLKAGEAGYDPFSRRWTRSRNYYNAKAPGGDAAAVANGDTNGAIGSGNGNDAGAAAAE 561
Query: 475 AGEMXXXXXXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGF 296
AG A K+VDTNAPVD+GTESN LH+FELPI L L+KF G GF
Sbjct: 562 AGRAATAAALQEAAGAGKLVDTNAPVDEGTESNMLHDFELPISLDVLRKFGGHEGAVAGF 621
Query: 295 SARKQGIEATIGYKLPVNDGRRHALT 218
ARKQ IEAT+G ++P NDGRRHALT
Sbjct: 622 MARKQRIEATVGCRVPENDGRRHALT 647
Score = 106 bits (264), Expect(2) = 3e-40
Identities = 89/225 (39%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Frame = -1
Query: 1628 PPPPFRGCPSLW--CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGARDSSP 1455
PP P RG S D+ AAK +ALNEL AK +KQ+D E +RK+RD A G R SP
Sbjct: 163 PPLPSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRD-ASRGSSGNRGLSP 221
Query: 1454 A--E*LVPMPTLDSSESEGESKTDGRDK-SPEDNEM--------------D*FRGYNLI* 1326
+ SS+SE ES+++ D+ S D M F I
Sbjct: 222 VKRKPFTASSLSSSSQSESESRSNSEDEGSTGDGGMVDSEDERGTWGPNGPTFNDIKEIT 281
Query: 1325 I*Y*SMQSYDHS*VEAGEMVHGALL*GNNCRLLCSRWD*VNLVRLCHI*FLCGKNVDATD 1146
I + + E L+ G R+ R + RLC + +NVDATD
Sbjct: 282 IRRSKLAKW------LMEPFFEELIVGCFVRVGIGRSKTGAIYRLCMV-----RNVDATD 330
Query: 1145 PDRQYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSR 1011
PDR Y LEN+TT+K+LN VW NE+SAARWQMAMISD PLE R
Sbjct: 331 PDRTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPLEEEFR 375
Score = 89.4 bits (220), Expect(2) = 3e-40
Identities = 58/134 (43%), Positives = 78/134 (58%), Gaps = 5/134 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNPK-FSKRKH 1930
MADL++L+LEAAGRT G R + +LP R RE SY DG SDS +DDSD+ ++ RK
Sbjct: 1 MADLENLLLEAAGRT-GTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKP 59
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA---PSIGSHIYKDEEDKEELG 1759
GSQVPLKKR DP E+ + +G +YK+EED+ +L
Sbjct: 60 SGSQVPLKKRLDPAERDDDQGSQEEGDYNDAGSGRERDSSDESDVGDDLYKNEEDRRQLA 119
Query: 1758 KMSELDREMIF*RR 1717
+++EL+REMI R
Sbjct: 120 QLTELEREMILSER 133
>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|590624750|ref|XP_007025692.1| PAF1 complex component
isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 204 bits (519), Expect = 2e-49
Identities = 145/378 (38%), Positives = 210/378 (55%), Gaps = 15/378 (3%)
Frame = -2
Query: 1306 KAMTIHRLKLVKWFMEPFFEETIVGCFVHVGIE*TW*GYAIYSFCVVRMWMLLTQTGSTI 1127
K +TI R KL KWFMEPFFEE IVGC+V VGI + G IY C+VR + T+ T
Sbjct: 279 KEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSG-PIYRLCMVRN-VDATEPERT- 335
Query: 1126 WRTGQLTSG*TVCGIMRPQQLGGRW---L*FRTFCHLKGVQGLV*EVEWCGSCMLTLKEM 956
++ T+ + + + RW + + + + L+ E+E G M + +++
Sbjct: 336 YKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDV 395
Query: 955 TEKSEEIQKINSYVSSAANVKQMLQEKKSTASRPHNVAAEKDQLRKEIEVAKSHHDDAEV 776
EK E +QK ++V SAA VKQMLQEKKST+SRP N+AAEKD+LR+++E+A+S HD+AEV
Sbjct: 396 LEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEV 455
Query: 775 ERIQAKLKELEEFLGSPSR--------RMQKQ*ELRMH*S*SQLILD*KLERNGVIFSQX 620
ERI+ +L++LE + + M ++ + S+L K G+ +
Sbjct: 456 ERIKMRLQQLEASRQAQEKDAKAVRLAEMNRKNRAENFKNASEL----KPVNTGLKAGEA 511
Query: 619 XXXXXGIIMCRNQ----VEKMGMEQLSMEGIPGLLQVGAGDRNLVGPANGVEAGEMXXXX 452
R++ + G + ++ + + +G+ N A EAG
Sbjct: 512 GYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASGNGNDARAA--AEAGRAATVA 569
Query: 451 XXXXXXXARKMVDTNAPVDQGTESNSLHNFELPILLAGLQKFWGPTRVQLGFSARKQGIE 272
A K+VDT+APVD+GTESN LH+FE+PI L LQ+F GP GF ARKQ IE
Sbjct: 570 ALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIE 629
Query: 271 ATIGYKLPVNDGRRHALT 218
AT+G ++P NDGRRHALT
Sbjct: 630 ATVGCQVPENDGRRHALT 647
Score = 103 bits (258), Expect(2) = 4e-39
Identities = 87/234 (37%), Positives = 115/234 (49%), Gaps = 23/234 (9%)
Frame = -1
Query: 1643 RKEVFPPPPFRGCPSLW--CDKPAAKSEALNEL*AK*MKQKDLEGYRKMRDTAGVVGFGA 1470
RKE P P RG S D+ AAK +ALNEL AK +KQ+D E +RK+RD A G+
Sbjct: 159 RKETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRD-ASRGSSGS 217
Query: 1469 RDSSPA--E*LVPMPTLDSSESEGESKTDGRDKSPEDN----EMD*FRGYNLI*I*Y*SM 1308
R SP + SS+S+ ES+++ D+ + + D RG M
Sbjct: 218 RGLSPVKRKPFTASSLSSSSQSDSESRSNSEDEGSTGDGGMVDSDDDRG----------M 267
Query: 1307 QSYDHS*VE---------------AGEMVHGALL*GNNCRLLCSRWD*VNLVRLCHI*FL 1173
Q D + E L+ G R+ R + RLC +
Sbjct: 268 QGPDGPTFDDIKEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSGPIYRLCMV--- 324
Query: 1172 CGKNVDATDPDRQYNLENRTTHKWLNCVWDNEASAARWQMAMISDILPLERSSR 1011
+NVDAT+P+R Y LEN+TT+K+LN VW NE+SAARWQMAMISD P E R
Sbjct: 325 --RNVDATEPERTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFR 376
Score = 87.8 bits (216), Expect(2) = 4e-39
Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 5/134 (3%)
Frame = -3
Query: 2103 MADLDDLMLEAAGRTSGH*CRKKQTLPYLRWWREDSYLDG-SDSMEDDSDNPK-FSKRKH 1930
MADL++L+LEAAGRT G R + +LP R RE SY DG SDS +DDSD+ ++ RK
Sbjct: 1 MADLENLLLEAAGRT-GTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKP 59
Query: 1929 LGSQVPLKKRFDPHEKXXXXXXXXXXXXXXXXXXXXXSA---PSIGSHIYKDEEDKEELG 1759
GSQVPLKKR DP E+ + +G +YK+E+D+ +L
Sbjct: 60 SGSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLA 119
Query: 1758 KMSELDREMIF*RR 1717
+M+EL+RE+I R
Sbjct: 120 QMTELERELILSER 133