BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00003097
         (2210 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009399689.1| PREDICTED: RNA polymerase-associated protein...   709   0.0  
ref|XP_010915870.1| PREDICTED: RNA polymerase-associated protein...   665   0.0  
ref|XP_010925891.1| PREDICTED: RNA polymerase-associated protein...   664   0.0  
ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein...   655   0.0  
ref|XP_008801861.1| PREDICTED: RNA polymerase-associated protein...   655   0.0  
ref|XP_008783248.1| PREDICTED: RNA polymerase-associated protein...   652   0.0  
ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein...   635   e-179
ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein...   634   e-179
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   633   e-178
ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein...   632   e-178
ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   629   e-177
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   623   e-175
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   622   e-175
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   620   e-174
gb|KHN07280.1| RNA polymerase-associated protein RTF1 like [Glyc...   619   e-174
gb|KHN13191.1| RNA polymerase-associated protein RTF1 like [Glyc...   618   e-174
gb|KHN10031.1| RNA polymerase-associated protein RTF1 like [Glyc...   618   e-174
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   616   e-173
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   610   e-171
ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein...   608   e-171

>ref|XP_009399689.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Musa
            acuminata subsp. malaccensis]
            gi|694997498|ref|XP_009399697.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Musa
            acuminata subsp. malaccensis]
            gi|694997500|ref|XP_009399705.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Musa
            acuminata subsp. malaccensis]
            gi|694997502|ref|XP_009399712.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Musa
            acuminata subsp. malaccensis]
          Length = 666

 Score =  709 bits (1829), Expect = 0.0
 Identities = 398/673 (59%), Positives = 467/673 (69%), Gaps = 17/673 (2%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQ-SRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP 1835
            MA      LQAAGRTG  SG+KN  SR  SRW+R+                      K  
Sbjct: 1    MADLENLLLQAAGRTG--SGQKNNNSRPQSRWKRDNSYSDGSDSRDDDSDDPKYTKRKPS 58

Query: 1834 GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXS---APSVGSDLYXXXXXXXELGK 1664
            GSQVPLKKRFDPPEK                         APSVGSDLY       ELGK
Sbjct: 59   GSQVPLKKRFDPPEKDKRGGWRDGDNDDGGGRHSDDDSDSAPSVGSDLYKDDADKEELGK 118

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARETSSKVEMKARKAXXXXXXXXXXXXXXSDKPAA 1484
            MSELDREMILAERSTKIDDY+LKK AR +SSK+E K+RK               +D+ AA
Sbjct: 119  MSELDREMILAERSTKIDDYKLKKMARASSSKME-KSRKERSPPLPIRGRSSAQNDRTAA 177

Query: 1483 KSDALNELRAKRMKQQDPEAYR-KMRDTAGGV---GFSVKDSSPAKR-SVPLPTLPSSES 1319
            KS ALNELRAKRM+QQDPE YR ++RD  G     GF+++DSSP+KR ++ +   P S+ 
Sbjct: 178  KS-ALNELRAKRMRQQDPEGYRSRLRDLTGEGAIGGFTLRDSSPSKRRNLGMAASPPSDI 236

Query: 1318 EGESKADGKDKSPDD--------NEESSEDITGSKFDTLKYEDIKAITIRRSKLAKWFME 1163
              E ++ G+  S DD        +++  ED++ S+ D  K+ED+K ITIRRSKL KWFME
Sbjct: 237  SNEGESGGRADSDDDRFHEDKKMDDDLLEDLSPSRLDAPKFEDVKNITIRRSKLVKWFME 296

Query: 1162 PFFEEIIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGN 983
            PFFEE+I GCFVR+GIGKTRSG   Y+LCLV+NVDATDP + YKLE+  T+KWLNC+WG+
Sbjct: 297  PFFEELISGCFVRLGIGKTRSGKPKYKLCLVRNVDATDPGKHYKLEHYTTYKWLNCIWGS 356

Query: 982  EASAARWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAA 803
            ++SAARWQMAMVSDS P+E+EF +W  +VE  GGRMPT +E+ +K EEIQKIN++VYSAA
Sbjct: 357  DSSAARWQMAMVSDSPPLEDEFNEWKWQVENDGGRMPTHQEILDKKEEIQKINNFVYSAA 416

Query: 802  TVKQMLQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSK 623
            TVKQML EKKS + RP+N+AAEKDRLRKE+EVA+SR D+AEVERI+AR+KELE+ISR++K
Sbjct: 417  TVKQMLLEKKSASLRPVNIAAEKDRLRKEMEVAQSRRDEAEVERIRARLKELEDISRKTK 476

Query: 622  QKDEKAVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPX 443
            Q DEKAV+LAEMNR+NRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRS NYYVSKP 
Sbjct: 477  QVDEKAVRLAEMNRRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSMNYYVSKPG 536

Query: 442  XXXXXXXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPV 263
                        +       AG  N V   N                      VDT+APV
Sbjct: 537  GDGNAAAANDDHEKPVV---AGVANGVVTINGVEAGEAATAAALQAAAGAGKLVDTSAPV 593

Query: 262  DQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALT 83
            D GT SN LHNF+LPISLA LQ FGGPQGV LG +ARKQ+IEATIGYKVPDNDGRRH LT
Sbjct: 594  DHGTASNFLHNFELPISLAALQNFGGPQGVHLGLMARKQKIEATIGYKVPDNDGRRHPLT 653

Query: 82   LTVSDYKRRRGLL 44
            LTVSDYKRRRGLL
Sbjct: 654  LTVSDYKRRRGLL 666


>ref|XP_010915870.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Elaeis
            guineensis] gi|743771171|ref|XP_010915871.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog [Elaeis
            guineensis]
          Length = 657

 Score =  665 bits (1716), Expect = 0.0
 Identities = 388/666 (58%), Positives = 460/666 (69%), Gaps = 10/666 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHPG 1832
            MA      LQAAGRTG +  + + SR  SRWRRE                      K  G
Sbjct: 1    MADLENLLLQAAGRTGASGRKNSHSRPQSRWRREGSFSDGSDSKDDDSDNPRYNKRKSAG 60

Query: 1831 SQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXS--APSVGSDLYXXXXXXXELGKMS 1658
            SQVPLKKR DPPEK                     S  APSVGSDLY       ELGKMS
Sbjct: 61   SQVPLKKRLDPPEKDKRNGWGDDDDDDDDRHSSDDSDSAPSVGSDLYRDEADKEELGKMS 120

Query: 1657 ELDREMILAERSTKIDDYRLKKKARETSSKVEMKARKAXXXXXXXXXXXXXXSDKPAAKS 1478
            ELDRE+ILAERSTKIDDY+LKK AR  SSK++ K+RK               +D+ AAKS
Sbjct: 121  ELDRELILAERSTKIDDYKLKKMAR-ASSKID-KSRKESPPPLPYRSRSSARTDRTAAKS 178

Query: 1477 DALNELRAKRMKQQDPEAYR-KMRDTAG--GVGFSVKDSSPAK-RSVPLPTLP-SSESEG 1313
             ALNELRAKRM+QQDPE YR + +D AG  G G   +DSSP++ RSV  P    S++ E 
Sbjct: 179  -ALNELRAKRMRQQDPEGYRSRFKDAAGEGGGGAGNQDSSPSRHRSVASPPSDLSNDREN 237

Query: 1312 ESKADGKDKSPDDNEESSEDI---TGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEII 1142
              + D +D+    N +  +D+   + S+ D LK+EDIK ITIRRSKL KWF EPFFEE+I
Sbjct: 238  GGRTDSEDERFPGNNKIEDDLLDDSPSRLDPLKFEDIKDITIRRSKLVKWFREPFFEELI 297

Query: 1141 VGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAARW 962
            VGCFVRV +G +RSG + Y+LCLV+NVDA++P +QYKLE+ +T+K LN  WGN +   R+
Sbjct: 298  VGCFVRVQVG-SRSG-ARYKLCLVRNVDASNPSKQYKLEHYMTYKLLNLTWGNMSE--RY 353

Query: 961  QMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQMLQ 782
            +MA VSDS  +E+EFK+W  EVE+ GG+MPT ++V EK E IQKI+++VYSAATVKQMLQ
Sbjct: 354  EMAYVSDSPALEKEFKEWQHEVEKSGGQMPTRQDVHEKKEAIQKISNFVYSAATVKQMLQ 413

Query: 781  EKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKAV 602
            EKKS  +RP+NVAAEKDRLRKE+EVA+SR D+AEVERI+AR+KELEE+SRQ++QKD KAV
Sbjct: 414  EKKSALARPVNVAAEKDRLRKEMEVAESRRDEAEVERIRARLKELEEMSRQAEQKDLKAV 473

Query: 601  KLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXXX 422
            +LAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP        
Sbjct: 474  RLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP--GGDGNA 531

Query: 421  XXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTESN 242
                GD G+A  G GD   V   N                      VDT+APVDQGTESN
Sbjct: 532  EAANGDNGSAAMGNGDAVAVGLLNGVEAGVAATAAAQEAAAGAGKLVDTSAPVDQGTESN 591

Query: 241  SLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSDYK 62
            +LH+F+LPISLA LQK+GGP  V L F++RKQ+IEAT G KVPDNDGRRHALTLTVSDYK
Sbjct: 592  TLHDFELPISLAALQKYGGPHAVHLNFMSRKQKIEATTGCKVPDNDGRRHALTLTVSDYK 651

Query: 61   RRRGLL 44
            RRRGLL
Sbjct: 652  RRRGLL 657


>ref|XP_010925891.1| PREDICTED: RNA polymerase-associated protein C651.09c-like [Elaeis
            guineensis] gi|743800344|ref|XP_010925892.1| PREDICTED:
            RNA polymerase-associated protein C651.09c-like [Elaeis
            guineensis] gi|743800346|ref|XP_010925893.1| PREDICTED:
            RNA polymerase-associated protein C651.09c-like [Elaeis
            guineensis] gi|743800348|ref|XP_010925894.1| PREDICTED:
            RNA polymerase-associated protein C651.09c-like [Elaeis
            guineensis] gi|743800350|ref|XP_010925895.1| PREDICTED:
            RNA polymerase-associated protein C651.09c-like [Elaeis
            guineensis]
          Length = 663

 Score =  664 bits (1713), Expect = 0.0
 Identities = 384/671 (57%), Positives = 452/671 (67%), Gaps = 15/671 (2%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHPG 1832
            MA      LQAAGRTG +  + N SR  SRWRRE                      K  G
Sbjct: 1    MADLENLLLQAAGRTGTSGRKNNHSRPQSRWRREGSYSDGSDSKDDDSDNPRYNKRKPAG 60

Query: 1831 SQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXS------APSVGSDLYXXXXXXXEL 1670
            SQVPLKKR DPPEK                     S      APSVGSDLY       EL
Sbjct: 61   SQVPLKKRLDPPEKDKSSGWGDDDEDDDDDDDDRQSDDESDSAPSVGSDLYRDEADKEEL 120

Query: 1669 GKMSELDREMILAERSTKIDDYRLKKKARETSSKVEMKARKAXXXXXXXXXXXXXXSDKP 1490
            GKMSELDRE+ILAERSTKIDDY+LKK AR +S+K+E K+RK                D+ 
Sbjct: 121  GKMSELDRELILAERSTKIDDYKLKKMARASSAKME-KSRKESPPPLPNRSRSSARIDRT 179

Query: 1489 AAKSDALNELRAKRMKQQDPEAYR-KMRDTAG---GVGFSVKDSSPAKR--SVPLPTLPS 1328
            AAKS AL+ELRAKRMKQQ PE YR + +D  G    VG   +D SP K   +   P+  S
Sbjct: 180  AAKS-ALDELRAKRMKQQAPEGYRGRFKDAVGDGGSVGAGHQDMSPPKHRSAASPPSDLS 238

Query: 1327 SESEGESKADGKDKSPDDNEESSEDI---TGSKFDTLKYEDIKAITIRRSKLAKWFMEPF 1157
            +E E   + D +D+    N    +D+   + S+ D LK+EDIK ITIRRSKL KWF EPF
Sbjct: 239  NEHESGGRMDSEDERFPGNNRMEDDLLDDSPSRLDPLKFEDIKDITIRRSKLVKWFREPF 298

Query: 1156 FEEIIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEA 977
            FE++IVGCFVRV +G +RSG + Y+L LV+NVDA DP RQYKLE+  T+K L+  WGN  
Sbjct: 299  FEDLIVGCFVRVQVG-SRSG-ARYKLFLVRNVDAADPSRQYKLEHHTTYKMLSLTWGN-- 354

Query: 976  SAARWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATV 797
             + +++MA VSDS  +E+EFK+W  EVE+ GGRMPT + V +K E IQ+IN++VYSAATV
Sbjct: 355  MSVKYEMAYVSDSPALEKEFKEWQHEVEKSGGRMPTRQNVQDKKEAIQRINNFVYSAATV 414

Query: 796  KQMLQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQK 617
            KQMLQEKKS + RP+NVAAEKDRLRKE+EVA+SR D+AEVERI+AR+KELE++SR+++QK
Sbjct: 415  KQMLQEKKSASGRPVNVAAEKDRLRKEMEVAESRRDEAEVERIRARLKELEDMSRKAEQK 474

Query: 616  DEKAVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXX 437
            D KAV+LAEMNRKNRAENFKNASELKPVN SLKAGEAGYDPFSRRWTRSRNYYVSKP   
Sbjct: 475  DAKAVRLAEMNRKNRAENFKNASELKPVNPSLKAGEAGYDPFSRRWTRSRNYYVSKP--G 532

Query: 436  XXXXXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQ 257
                     GD G+A  G GD   V P N                      VDT+APVDQ
Sbjct: 533  GDGNAVAANGDNGSATMGNGDAGAVGPLNGVEAGVAATAAALEAAAGAGKLVDTSAPVDQ 592

Query: 256  GTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLT 77
            GTESN+LH+F+LPISLA LQKFGGPQ V L F++RKQ+IEAT GYKVPDNDGRRHALTLT
Sbjct: 593  GTESNTLHDFELPISLAALQKFGGPQAVHLNFMSRKQKIEATTGYKVPDNDGRRHALTLT 652

Query: 76   VSDYKRRRGLL 44
            VSDYKRRRGLL
Sbjct: 653  VSDYKRRRGLL 663


>ref|XP_010241126.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nelumbo
            nucifera]
          Length = 666

 Score =  655 bits (1689), Expect = 0.0
 Identities = 371/674 (55%), Positives = 446/674 (66%), Gaps = 18/674 (2%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKH-- 1838
            MA      L+AAGRTGG    ++     SR RR+                          
Sbjct: 1    MADLENLLLEAAGRTGGPGRNRHSRPPPSRRRRDDSYFDDGSDSKDDDDSDDDDPGYSGR 60

Query: 1837 --PGSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAPS------VGSDLYXXXXX 1682
               GSQVPLKKR D  +K                               VGSDLY     
Sbjct: 61   KPSGSQVPLKKRLDAHDKDDDRDSRDDDRDYDDDDDDEDRRAGSGDDSDVGSDLYKDDRD 120

Query: 1681 XXELGKMSELDREMILAERSTKIDDYRLKK--KARETSSKVEMKARKAXXXXXXXXXXXX 1508
              EL  MSEL RE IL+ER+TK DD RL++  +AR+   K ++                 
Sbjct: 121  REELANMSELQREFILSERATKKDDKRLQEAVRARQGGKKTDIMKETPPSVRVRSSSRYA 180

Query: 1507 XXSDKPAAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR-SVPLPTLP 1331
               DK AAK DALNELR KR  +QDPE +RK+RD+  G G   +  SP +R S+     P
Sbjct: 181  ---DKLAAKDDALNELRNKRRNKQDPEGHRKLRDSGRG-GLGARGGSPVRRRSILTAASP 236

Query: 1330 SSESEGESKADGK---DKSPDDNE--ESSEDITGSKFDTLKYEDIKAITIRRSKLAKWFM 1166
            SS S+ +S++      D S  D +  +S +D  G+  +   +E+IK+ITIRRSKLAKWFM
Sbjct: 237  SSSSQSDSQSGSHSRDDGSTGDGDLGDSDDDRHGAGKEVPTFEEIKSITIRRSKLAKWFM 296

Query: 1165 EPFFEEIIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWG 986
            EPFFEE+IVGCFVRVGIG +RSG SIYRLC+VKNVDATDP++QYKLENR T+K+LNC+WG
Sbjct: 297  EPFFEELIVGCFVRVGIGMSRSGQSIYRLCMVKNVDATDPNKQYKLENRTTYKYLNCIWG 356

Query: 985  NEASAARWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSA 806
            NE+SAARWQMA VSDS P+ EEF DW+REVER GGRMPT ++V+EK E IQK N++VYSA
Sbjct: 357  NESSAARWQMARVSDSAPLVEEFNDWLREVERHGGRMPTKQDVSEKREAIQKTNTFVYSA 416

Query: 805  ATVKQMLQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQS 626
            ATVKQMLQEKK+ +SRPLN+AAEK+RLR+E+EVA+SR D+AEVERI+AR++ELE +SRQ+
Sbjct: 417  ATVKQMLQEKKTASSRPLNIAAEKERLRREMEVAESRRDEAEVERIRARLQELEAMSRQA 476

Query: 625  KQKDEKAVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP 446
            K+KD KAV+LAEMN++NRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP
Sbjct: 477  KEKDSKAVRLAEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP 536

Query: 445  XXXXXXXXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAP 266
                          +  +V  +G G   A                         VDT+AP
Sbjct: 537  GEGAPTANGEAAVASAVSVASSGTGARAA----AEAGIAATAAALEAAAGAGKLVDTSAP 592

Query: 265  VDQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHAL 86
            VDQGTESNSLH+F+LPISLAGLQKFGGPQG  LGFL RKQRIEAT+G +VP+NDGRRH+L
Sbjct: 593  VDQGTESNSLHDFELPISLAGLQKFGGPQGAHLGFLGRKQRIEATVGCRVPENDGRRHSL 652

Query: 85   TLTVSDYKRRRGLL 44
            TLTVSDYKRRRGLL
Sbjct: 653  TLTVSDYKRRRGLL 666


>ref|XP_008801861.1| PREDICTED: RNA polymerase-associated protein RTF1-like [Phoenix
            dactylifera] gi|672107251|ref|XP_008801934.1| PREDICTED:
            RNA polymerase-associated protein RTF1-like [Phoenix
            dactylifera] gi|672107253|ref|XP_008802006.1| PREDICTED:
            RNA polymerase-associated protein RTF1-like [Phoenix
            dactylifera] gi|672107255|ref|XP_008802085.1| PREDICTED:
            RNA polymerase-associated protein RTF1-like [Phoenix
            dactylifera] gi|672107257|ref|XP_008802160.1| PREDICTED:
            RNA polymerase-associated protein RTF1-like [Phoenix
            dactylifera]
          Length = 659

 Score =  655 bits (1689), Expect = 0.0
 Identities = 378/667 (56%), Positives = 454/667 (68%), Gaps = 11/667 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHPG 1832
            MA      LQAAGRTG +  + N SR  SRWRRE                      K  G
Sbjct: 1    MADLENLLLQAAGRTGTSGRKNNHSRPQSRWRREGSYSDGSDSKDDDSDNPRYNKRKPAG 60

Query: 1831 SQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXS--APSVGSDLYXXXXXXXELGKMS 1658
            SQVPLKKR DPPEK                     S  APSVGSDLY       ELGKMS
Sbjct: 61   SQVPLKKRLDPPEKDKRSGWADDDDDDDDRHSDDESDSAPSVGSDLYRDEADKEELGKMS 120

Query: 1657 ELDREMILAERSTKIDDYRLKKKARETSSKVEMKARKAXXXXXXXXXXXXXXSDKPAAKS 1478
            ELDRE+ILAERSTKIDDY+LKK AR +S+K+E K++K               +D+ AAKS
Sbjct: 121  ELDRELILAERSTKIDDYKLKKMARASSAKME-KSQKESPPPLPYRSRSSARTDRTAAKS 179

Query: 1477 DALNELRAKRMKQQDPEAYR-KMRDTAGGVGFSV---KDSSPAKR--SVPLPTLPSSESE 1316
             AL+ELRAKRM+QQ PE YR + +D  G  G S    +D SP K   +   P+  S++ E
Sbjct: 180  -ALDELRAKRMRQQAPEGYRSRFKDAIGDGGSSGAGNQDMSPPKHRSAASPPSDLSNDRE 238

Query: 1315 GESKADGKDKSPDDNEESSEDI---TGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEI 1145
               + D +D+    N +  +D+   + S+ D LK+EDIK ITIRRSKL KWF EPFFEE+
Sbjct: 239  SGGRMDSEDERFPGNNKMEDDLLDDSPSRLDPLKFEDIKDITIRRSKLVKWFREPFFEEL 298

Query: 1144 IVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAAR 965
            I+GCFVRV +G +RSG + Y+L LV+NV+A DP RQYKLE+  T+K LN  WGN   + +
Sbjct: 299  ILGCFVRVQVG-SRSG-ARYKLFLVRNVEAADPSRQYKLEHHTTYKLLNLTWGN--MSVK 354

Query: 964  WQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQML 785
            ++MA VSDS  +E+EFK+W  EVE+ GGRMPT ++V +K E IQKIN++VYSAATVKQML
Sbjct: 355  YEMAYVSDSPVLEKEFKEWQHEVEKSGGRMPTRQDVQDKKEAIQKINNFVYSAATVKQML 414

Query: 784  QEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKA 605
            QEKKS + RP+NVAAEKDRLRKE+EVA+SR D+ EVERI+AR+KELE++SRQ++QKD KA
Sbjct: 415  QEKKSASGRPINVAAEKDRLRKEMEVAESRRDEVEVERIRARLKELEDMSRQAEQKDAKA 474

Query: 604  VKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXX 425
            V+LAEMNRKNRAENF+NASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP       
Sbjct: 475  VRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP--GGEGN 532

Query: 424  XXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTES 245
                 G+ G+A  G GD   V P +                      VDT+APVDQGTES
Sbjct: 533  AAAANGNNGSATTGNGDAGAVGPLSGVEAGVAATAAALEAAAGAGKLVDTSAPVDQGTES 592

Query: 244  NSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSDY 65
            N+LH+F+L ISLA LQKFGGPQ V L F++RKQ+IEAT GYKVPD+DGRRHALTLTVSDY
Sbjct: 593  NTLHDFELSISLAALQKFGGPQAVHLNFMSRKQKIEATTGYKVPDSDGRRHALTLTVSDY 652

Query: 64   KRRRGLL 44
            KRRRGLL
Sbjct: 653  KRRRGLL 659


>ref|XP_008783248.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Phoenix
            dactylifera] gi|672119997|ref|XP_008783249.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog [Phoenix
            dactylifera]
          Length = 656

 Score =  652 bits (1682), Expect = 0.0
 Identities = 378/665 (56%), Positives = 448/665 (67%), Gaps = 9/665 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHPG 1832
            MA      L+AAGR G +  + + SR  SRWRRE                      K  G
Sbjct: 1    MADLENLLLEAAGRMGASGRKNSHSRPQSRWRREGSFSDGSDSKDDDSDSPRYNKRKSAG 60

Query: 1831 SQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAPSVGSDLYXXXXXXXELGKMSEL 1652
            SQVPLKKR DPPEK                     SAPSVGSDLY       ELGKMSEL
Sbjct: 61   SQVPLKKRLDPPEKDKRSGWGDDDDDDRHSSDESDSAPSVGSDLYRDEADKEELGKMSEL 120

Query: 1651 DREMILAERSTKIDDYRLKKKARETSSKVEMKARKAXXXXXXXXXXXXXXSDKPAAKSDA 1472
            DRE+ILAERSTKIDDY+LKK AR  SSK++ K+RK               +D+ AAKS A
Sbjct: 121  DRELILAERSTKIDDYKLKKMAR-ASSKID-KSRKVSPPPLPYRSRSSVRTDRTAAKS-A 177

Query: 1471 LNELRAKRMKQQDPEAYR-KMRDTAG---GVGFSVKDSSPAKRSVPL--PTLPSSESEGE 1310
            LNELRAKRM+QQDPE YR + +D AG   G G   +DSSP+K  +    P+  S+E E  
Sbjct: 178  LNELRAKRMRQQDPEGYRSRFKDAAGEGGGAGAGNQDSSPSKHRLAASPPSDLSNERENG 237

Query: 1309 SKADGKDKSPDDNEESSEDI---TGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEIIV 1139
             + D +D+    N +  +D+   + S+ D LK+EDIK ITIRRSKL KWF EPFFEE+IV
Sbjct: 238  GRTDSEDERFPGNNKIEDDLLDDSPSRLDPLKFEDIKDITIRRSKLTKWFREPFFEELIV 297

Query: 1138 GCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAARWQ 959
            GCFVRV +G +RSG + Y+LCLV+NVDA+D  RQY+LE+  T K L+  WGN +   R++
Sbjct: 298  GCFVRVQVG-SRSG-ARYKLCLVRNVDASDSSRQYRLEHYTTCKLLHLTWGNMSE--RYE 353

Query: 958  MAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQMLQE 779
            MA +SDS  +E+EFK+W  EVE+ GG+MPT ++V +K E IQKINS++YSAATVKQMLQE
Sbjct: 354  MAYISDSPALEKEFKEWQHEVEKSGGQMPTRQDVHDKKEAIQKINSFIYSAATVKQMLQE 413

Query: 778  KKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKAVK 599
            KKS  +RP+NVAAEKDRLRKE+EVA+SR D+AEVERI+AR+KELEE+SRQ++QKD KAV+
Sbjct: 414  KKSALARPVNVAAEKDRLRKEMEVAESRRDEAEVERIRARLKELEEMSRQAEQKDLKAVR 473

Query: 598  LAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXXXX 419
            LAEMNRKNRAENFKNASELK VNT LKAGE GYDPFSRRWTRSRNYYVSKP         
Sbjct: 474  LAEMNRKNRAENFKNASELKAVNTRLKAGETGYDPFSRRWTRSRNYYVSKP--GGDGNAV 531

Query: 418  XXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTESNS 239
               GD G A  G GD   V   N                      VDT+APVD GTESN+
Sbjct: 532  AANGDNGRATMGDGDAVAVGLLNGVEAGVAATAAAQEAAAGAGKLVDTSAPVDHGTESNT 591

Query: 238  LHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSDYKR 59
            LH+F+LPISLA LQKFGGPQ     F++RKQ+IEAT G KVPDNDGRRHAL LTVSDYKR
Sbjct: 592  LHDFELPISLAALQKFGGPQAGHFNFMSRKQKIEATTGCKVPDNDGRRHALALTVSDYKR 651

Query: 58   RRGLL 44
            RRGLL
Sbjct: 652  RRGLL 656


>ref|XP_009347098.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
            bretschneideri]
          Length = 657

 Score =  635 bits (1639), Expect = e-179
 Identities = 365/673 (54%), Positives = 431/673 (64%), Gaps = 17/673 (2%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRT  +SG+   S   SR RR                           
Sbjct: 1    MAELENLLLEAAGRTS-SSGKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSA--PSVGSDLYXXXXXXXELGK 1664
             G QVPLKKR DP E                       +    VGSDLY       +L +
Sbjct: 60   SGPQVPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARET--SSKVEMKARKAXXXXXXXXXXXXXXSDKP 1490
            MSEL RE+IL+ER+ K DD  LK+K R      K     ++               +D+ 
Sbjct: 120  MSELQRELILSERAQKKDDKSLKEKFRPKWDKGKAPQSRKETPPLPSSRVRSSARSADRA 179

Query: 1489 AAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKRSVPLPTLPSSESEGE 1310
            AAK DALNELRAKR+KQQDPEA+RK+RD + G   S +  S   R        SS S+ +
Sbjct: 180  AAKDDALNELRAKRLKQQDPEAHRKLRDASRGGSSSSRSFSHLNRKSFTAVGRSSSSQSD 239

Query: 1309 SKADGKDKSPDDNEESSE---DITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEIIV 1139
            S  D + +S DD     +   D    + + L ++DIK ITIRRSKLAKWFMEPFFEE+IV
Sbjct: 240  S--DSRSRSEDDGSSGDDAMIDSDDERSEGLTFDDIKEITIRRSKLAKWFMEPFFEELIV 297

Query: 1138 GCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAARWQ 959
            GCFVRVGIG+++SG +IYRLC+V+NVDA+DPDRQYKLEN+ THK+LN VWGNE SAARWQ
Sbjct: 298  GCFVRVGIGRSKSG-AIYRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQ 356

Query: 958  MAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQMLQE 779
            MAM+SDS P+EEEFK W+REVER GGR+P+ ++V EK E I+K NS+VYSAATVKQM+QE
Sbjct: 357  MAMISDSAPLEEEFKQWIREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQE 416

Query: 778  KKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKAVK 599
            KKS +SRPLN+A EKDRLR+E+EVAKS+ DDAEVERIQ R+++L E  RQS+ KD KA++
Sbjct: 417  KKSASSRPLNIALEKDRLRRELEVAKSKQDDAEVERIQTRLQQL-EARRQSQGKDSKAIR 475

Query: 598  LAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXXXX 419
            LAEMNRKNR ENFKNASELKP N  LKAGEAGYDPFSRRWTRSRNYYVSKP         
Sbjct: 476  LAEMNRKNRVENFKNASELKPKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEA 535

Query: 418  XXXGD--------TGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPV 263
                D         GTAV GA    + A                         +DT+APV
Sbjct: 536  IAVADGALADIESNGTAVVGAVRAGMAATA-----------AALEAAAGAGKLIDTSAPV 584

Query: 262  DQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALT 83
            D GTESN  HNF+LPISLA LQKFGGPQG Q GFLARKQRIEAT+G +VP+NDGRRHALT
Sbjct: 585  DFGTESNLKHNFELPISLAALQKFGGPQGAQKGFLARKQRIEATVGCQVPENDGRRHALT 644

Query: 82   LTVSDYKRRRGLL 44
            LTVSDYKRRRGLL
Sbjct: 645  LTVSDYKRRRGLL 657


>ref|XP_008382360.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Malus
            domestica]
          Length = 657

 Score =  634 bits (1636), Expect = e-179
 Identities = 364/673 (54%), Positives = 431/673 (64%), Gaps = 17/673 (2%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRT  +SG+   S   SR RR                           
Sbjct: 1    MAELENLLLEAAGRTS-SSGKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSA--PSVGSDLYXXXXXXXELGK 1664
             G QVPLKKR DP E                       +    VGSDLY       +L +
Sbjct: 60   SGPQVPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARET--SSKVEMKARKAXXXXXXXXXXXXXXSDKP 1490
            MSEL RE+IL+ER+ K DD  LK+K R      K     ++               +D+ 
Sbjct: 120  MSELQRELILSERAQKKDDKSLKEKFRPKWDKGKAPQSRKETPPLPSSRVRSSARSADRA 179

Query: 1489 AAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKRSVPLPTLPSSESEGE 1310
            AAK DALNELRAKR+KQQDPEA+RK+RD + G   S +  S   R        SS S+ +
Sbjct: 180  AAKDDALNELRAKRLKQQDPEAHRKLRDASRGGSSSSRSFSHLNRKSFTAVGRSSSSQSD 239

Query: 1309 SKADGKDKSPDDNEESSE---DITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEIIV 1139
            S  D + +S DD     +   D    + + L ++DIK ITIRRSKLAKWFMEPFFEE+IV
Sbjct: 240  S--DSRSRSEDDGSSGDDAMIDSDDERSEGLTFDDIKEITIRRSKLAKWFMEPFFEELIV 297

Query: 1138 GCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAARWQ 959
            GCFVRVGIG+++SG +IYRLC+V+NVDA+DPDRQYKLEN+ THK+LN VWGNE SAARWQ
Sbjct: 298  GCFVRVGIGRSKSG-AIYRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQ 356

Query: 958  MAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQMLQE 779
            MAM+SDS P+EEEFK W+REVER GGR+P+ ++V EK E I+K NS+VYSAATVKQM+QE
Sbjct: 357  MAMISDSAPLEEEFKQWIREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQE 416

Query: 778  KKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKAVK 599
            KKS +SRPLN+A EKDRLR+E+EVAKS+ DDAEVERI+ R+++L E  RQS+ KD KA++
Sbjct: 417  KKSASSRPLNIALEKDRLRRELEVAKSKQDDAEVERIETRLQQL-EARRQSQGKDSKAIR 475

Query: 598  LAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXXXX 419
            LAEMNRKNR ENFKNASELKP N  LKAGEAGYDPFSRRWTRSRNYYVSKP         
Sbjct: 476  LAEMNRKNRVENFKNASELKPKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEA 535

Query: 418  XXXGD--------TGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPV 263
                D         GTAV GA    + A                         +DT+APV
Sbjct: 536  IAVADGALADIESNGTAVVGAVRAGMAATA-----------AALEAAAGAGKLIDTSAPV 584

Query: 262  DQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALT 83
            D GTESN  HNF+LPISLA LQKFGGPQG Q GFLARKQRIEAT+G +VP+NDGRRHALT
Sbjct: 585  DFGTESNLKHNFELPISLAALQKFGGPQGAQKGFLARKQRIEATVGCQVPENDGRRHALT 644

Query: 82   LTVSDYKRRRGLL 44
            LTVSDYKRRRGLL
Sbjct: 645  LTVSDYKRRRGLL 657


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  633 bits (1632), Expect = e-178
 Identities = 368/678 (54%), Positives = 438/678 (64%), Gaps = 22/678 (3%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRT  ++G+   S   SR RR                           
Sbjct: 1    MADLENLLLEAAGRTS-SAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSA--PSVGSDLYXXXXXXXELGK 1664
             G+QVPLKKR DP E                       +    VGSDLY       +L +
Sbjct: 60   SGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKAR---ET----SSKVEMKARKAXXXXXXXXXXXXX 1505
            MSEL RE+IL++R+ K DD  LK+K R   ET    SS+V   AR A             
Sbjct: 120  MSELQRELILSDRAQKKDDKSLKEKFRPKKETPPLPSSRVRSSARSA------------- 166

Query: 1504 XSDKPAAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKRSVPLPTLPSS 1325
              D+ AAK DALNELRAKR+KQQDPEA+RK+RD + G   S   S   ++S    T    
Sbjct: 167  --DRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSF---TAVGR 221

Query: 1324 ESEGESKADGKDKSPDDN---EESSEDITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFF 1154
             S  +S +D +  S DD    E+   D    + + L ++DIK ITIRRSKLAKW MEPFF
Sbjct: 222  SSSSQSDSDSRSHSEDDGSTGEDPMMDSDDERSEGLTFDDIKEITIRRSKLAKWLMEPFF 281

Query: 1153 EEIIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEAS 974
            EE+IVGCFVRVGIG+++SG  IYRLC+V+NVDA+DPDR+YKLEN+ THK+LN VWGNE S
Sbjct: 282  EELIVGCFVRVGIGRSKSG-PIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENS 340

Query: 973  AARWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVK 794
            AARWQMAM+SDS P+EEEFK WVREVER GGR+P+ ++V EK E I+KIN++VYSAATVK
Sbjct: 341  AARWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVK 400

Query: 793  QMLQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKD 614
            QM++EKKS +SRPLN+A EKDRLR+E+EVA+S+HDDAEVERI+ R+++L E  RQS+ KD
Sbjct: 401  QMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQL-EARRQSQGKD 459

Query: 613  EKAVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXX 434
             KAV+LAEMNRKNR ENFKNASELKPV T LKAGEAGYDPFSRRWTRSRNYYVSKP    
Sbjct: 460  SKAVRLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQK 519

Query: 433  XXXXXXXXGD--------TGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVD 278
                     D         GTAV GA    + A                         +D
Sbjct: 520  GEAEAIVDADGALADIESNGTAVVGAVRAGMAATA-----------AALEAAAGAGKLID 568

Query: 277  TNAPVDQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGR 98
            T+APVD GTESN +HNF+LPISLA LQKFGGPQG Q GFLARKQRIEAT+G +VP+NDGR
Sbjct: 569  TSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGR 628

Query: 97   RHALTLTVSDYKRRRGLL 44
            RHALTLTVSDYKRR GLL
Sbjct: 629  RHALTLTVSDYKRRMGLL 646


>ref|XP_009378467.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Pyrus x
            bretschneideri]
          Length = 657

 Score =  632 bits (1631), Expect = e-178
 Identities = 363/673 (53%), Positives = 431/673 (64%), Gaps = 17/673 (2%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRT  +SG+   S   SR RR                           
Sbjct: 1    MAELENLLLEAAGRTS-SSGKNRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSA--PSVGSDLYXXXXXXXELGK 1664
             G QVPLKKR DP E                       +    VGSDLY       +L +
Sbjct: 60   SGPQVPLKKRLDPTEVDDEQGSQEEGGYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARET--SSKVEMKARKAXXXXXXXXXXXXXXSDKP 1490
            MSEL RE+IL+ER+ K DD  LK+K R      K     ++               +D+ 
Sbjct: 120  MSELQRELILSERAQKKDDKSLKEKFRPKWDKGKAPQSRKETPPLPSSRVRSSARSADRA 179

Query: 1489 AAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKRSVPLPTLPSSESEGE 1310
            AAK DALNELRAKR+KQQDPEA+RK+RD + G   S +  S   R        SS S+ +
Sbjct: 180  AAKDDALNELRAKRLKQQDPEAHRKLRDASRGGSSSSRSFSHLNRKSFTAVGRSSSSQSD 239

Query: 1309 SKADGKDKSPDDNEESSE---DITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEIIV 1139
            S  D + +S DD     +   D    + + L ++DIK ITIRRSKLAKWFMEPFFEE+IV
Sbjct: 240  S--DSRSRSEDDGSSGDDAMIDSDDERSEGLTFDDIKEITIRRSKLAKWFMEPFFEELIV 297

Query: 1138 GCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAARWQ 959
            GCFVRVGIG+++SG +IYRLC+V+NVDA+DPDRQYKLEN+ THK+LN VWGNE SAARWQ
Sbjct: 298  GCFVRVGIGRSKSG-AIYRLCMVRNVDASDPDRQYKLENKTTHKYLNVVWGNENSAARWQ 356

Query: 958  MAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQMLQE 779
            MAM+SDS P+EEEFK W+REVER GGR+P+ ++V EK E I+K NS+VYSAATVKQM+QE
Sbjct: 357  MAMISDSAPLEEEFKQWIREVERSGGRLPSKEDVLEKKEAIKKTNSFVYSAATVKQMIQE 416

Query: 778  KKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKAVK 599
            KKS +SRPLN+A EKDRLR+E+EVAKS+ DDAEVERIQ R+++L E  RQS+ KD KA++
Sbjct: 417  KKSASSRPLNIALEKDRLRRELEVAKSKQDDAEVERIQTRLQQL-EARRQSQGKDSKAIR 475

Query: 598  LAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXXXX 419
            LAEMNRKNR ENFKNASELKP N  LKAGEAGYDPFSRRWTRSRNYYVSKP         
Sbjct: 476  LAEMNRKNRVENFKNASELKPKNIGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKEEAEA 535

Query: 418  XXXGD--------TGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPV 263
                D         GTAV GA    + A                         +DT+AP+
Sbjct: 536  IAVADGALVDIESNGTAVVGAVRAGMAATA-----------AALEAAAGAGKLIDTSAPL 584

Query: 262  DQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALT 83
            D GTESN  H+F+LPISLA LQKFGGPQG Q GFLARKQRIEAT+G +VP+NDGRRHALT
Sbjct: 585  DFGTESNLKHDFELPISLAALQKFGGPQGAQKGFLARKQRIEATVGCQVPENDGRRHALT 644

Query: 82   LTVSDYKRRRGLL 44
            LTVSDYKRRRGLL
Sbjct: 645  LTVSDYKRRRGLL 657


>ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
            RTF1 homolog [Prunus mume]
          Length = 648

 Score =  629 bits (1622), Expect = e-177
 Identities = 345/610 (56%), Positives = 420/610 (68%), Gaps = 13/610 (2%)
 Frame = -2

Query: 1834 GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSA--PSVGSDLYXXXXXXXELGKM 1661
            G+QVPLKKR DP E                       +    VGSDLY       +L +M
Sbjct: 53   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 112

Query: 1660 SELDREMILAERSTKIDDYRLKKKARET--SSKVEMKARKAXXXXXXXXXXXXXXSDKPA 1487
            SEL RE+IL++R+ K DD  LK+K R      K     ++               +D+ A
Sbjct: 113  SELQRELILSDRAQKKDDKSLKEKFRPKWDKGKTTHSRKETPPLPSSRVRSSARSADRAA 172

Query: 1486 AKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKRS-VPLPTLPSSESEGE 1310
            AK DALNELRAKR+KQQDPEA+RK+RD + G   S   S   ++S   +    SS+S+ +
Sbjct: 173  AKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQSDSD 232

Query: 1309 SKADGKDKSPDDNEESSEDITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEIIVGCF 1130
            S++  +D+     E++  D    + + L ++DIK ITIRRSKLAKW MEPFFEE+IVGCF
Sbjct: 233  SRSHSEDEG-STGEDAMMDSDDERSEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCF 291

Query: 1129 VRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAARWQMAM 950
            VRVGIG+++SG  IYRLC+V+NVDA+DPDR+YKLEN+ THK+LN VWGNE SAARWQMAM
Sbjct: 292  VRVGIGRSKSG-PIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAM 350

Query: 949  VSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQMLQEKKS 770
            +SDS P+EEEFK WVREVER GGR+P+ ++V EK E I+KIN++VYSAATVKQM++EKKS
Sbjct: 351  ISDSAPVEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKS 410

Query: 769  TASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKAVKLAE 590
             +SRPLN+A EKDRLR+E+EVA+S+HDDAEV+RI+ R+++L E  RQS+ KD KAV+LAE
Sbjct: 411  ASSRPLNIALEKDRLRRELEVAQSKHDDAEVDRIKTRLQQL-EARRQSQGKDSKAVRLAE 469

Query: 589  MNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXXXXXXX 410
            MNRKNR ENFKNASELKPV T LKAGEAGYDPFSRRWTRSRNYYVSKP            
Sbjct: 470  MNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVD 529

Query: 409  GD--------TGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQG 254
             D         GTAV GA    + A                         +DT+APVD G
Sbjct: 530  ADGALADIESNGTAVVGAVRAGMAATA-----------AALEAAAGAGKLIDTSAPVDFG 578

Query: 253  TESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTV 74
            TESN +HNF+LPISLA LQKFGGPQG Q GFLARKQRIEAT+G +VP+NDGRRHALTLTV
Sbjct: 579  TESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTV 638

Query: 73   SDYKRRRGLL 44
            SDYKRRRGLL
Sbjct: 639  SDYKRRRGLL 648


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  623 bits (1606), Expect = e-175
 Identities = 360/669 (53%), Positives = 446/669 (66%), Gaps = 13/669 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRTG  +GR   S   SR R +                          
Sbjct: 1    MADLENLLLEAAGRTG-TAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAP--SVGSDLYXXXXXXXELGK 1664
             GSQVPLKKR DP E+                     S+   ++G DLY       +L +
Sbjct: 60   SGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKK--ARETSSKVEMKARKAXXXXXXXXXXXXXXSDKP 1490
            M+EL REMIL++R+TK DD  L  K  ++    KV +  +++              +D+ 
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSRMRASARSADR- 178

Query: 1489 AAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR----SVPLPTLPSSE 1322
            +AK+DALNELRAKR+KQQDPEA+R++R+ +   G   +  SP KR    S  L +   SE
Sbjct: 179  SAKNDALNELRAKRLKQQDPEAHRRLREASRNAGS--RHFSPPKRKPFTSTSLSSSSHSE 236

Query: 1321 SEGESKADGKDKSPDDNEESSED---ITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFE 1151
            SE  S +D +  + D     S+D   + GS+  +  ++D+K ITIRRSKLAKWFMEPFFE
Sbjct: 237  SESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPS--FQDVKEITIRRSKLAKWFMEPFFE 294

Query: 1150 EIIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASA 971
            E+IVGCFVRVGIG++++G  IYRLC+VKNVDA++PDRQYKLEN+ T+K+LN VWGNE+SA
Sbjct: 295  ELIVGCFVRVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSA 353

Query: 970  ARWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQ 791
            ARWQMAMVSDS P+EEEFK WV+EV+R GGRMP+ ++V EK + IQK  ++VYSAATVKQ
Sbjct: 354  ARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQ 413

Query: 790  MLQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDE 611
            MLQEKKS ++RPLNVAAEKDRLR+E+E+A+S++D+AEVERI+ R+ EL E SRQ+KQKD 
Sbjct: 414  MLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLEL-EASRQAKQKDA 472

Query: 610  KAVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXX 431
            KA+KLAEMNRKNR ENFKNASE+KPVNT LKAGEAGYDPFSRRWTRSRNYY +KP     
Sbjct: 473  KALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAA 532

Query: 430  XXXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGT 251
                   G+    V GAG     AP                        VDT+APVDQGT
Sbjct: 533  AGNNSVNGN----VAGAGSNGTGAPVT-AEAGMVATAAALEAAAGAGKLVDTSAPVDQGT 587

Query: 250  ESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVS 71
            ESN LHNF+LPISLA LQKFGG QG Q GF+ARKQ+IEAT+G++V +NDGRRHALTLTVS
Sbjct: 588  ESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVS 647

Query: 70   DYKRRRGLL 44
            DYKRRRGLL
Sbjct: 648  DYKRRRGLL 656


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  622 bits (1603), Expect = e-175
 Identities = 360/673 (53%), Positives = 445/673 (66%), Gaps = 17/673 (2%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRTG  SGR   S   SR R +                          
Sbjct: 1    MADLENLLLEAAGRTG-TSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAP---SVGSDLYXXXXXXXELG 1667
             GSQVPLKKR DP E+                      +    ++G DLY       +L 
Sbjct: 60   SGSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLS 119

Query: 1666 KMSELDREMILAERSTKIDDYRLKKK--ARETSSKVEMKARKAXXXXXXXXXXXXXXSDK 1493
            +M+EL REMIL++R+TK DD  L  K  ++    KV +  +++              +D+
Sbjct: 120  EMTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSRMRASARSADR 179

Query: 1492 PAAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR----SVPLPTLPSS 1325
             +AK+DALNELRAKR+KQQDPEA+RK+R+ +   G   +  SP KR    S  L +   S
Sbjct: 180  -SAKNDALNELRAKRLKQQDPEAHRKLREASRNAG--PRHFSPPKRKPFTSTSLSSSSHS 236

Query: 1324 ESEGESKADGKDKSPDDNEESSED---ITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFF 1154
            ESE  S +D +  + D     S+D   +TGS+  +  ++DIK ITIRRSKLAKWFMEPFF
Sbjct: 237  ESESRSHSDDEGSTGDGGIGDSDDDRALTGSEGPS--FQDIKEITIRRSKLAKWFMEPFF 294

Query: 1153 EEIIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEAS 974
            EE+IVGCFVRVGIG++++G  IYRLC+VKNVDA++PDRQYKLEN+ T+K+LN VWGNE+S
Sbjct: 295  EELIVGCFVRVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 353

Query: 973  AARWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVK 794
            AARWQMAMVSDS P+EEEFK WV+EV+R GGRMPT ++V EK + IQK  ++VYSAATVK
Sbjct: 354  AARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVK 413

Query: 793  QMLQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKD 614
            QMLQEKKS ++RPLNVAAEKDRLR+E+E+A+S+HD+AEV+RI+AR++EL E SR +KQKD
Sbjct: 414  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQEL-EASRHAKQKD 472

Query: 613  EKAVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXX 434
             KA+KLAEMNRKNR ENFKNASELKPVNT LKAGEAGYDPFSRRWTRSRNYY  +     
Sbjct: 473  AKALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTGEKAAAG 532

Query: 433  XXXXXXXXGDTGTAVEGA---GDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPV 263
                       GT   GA    +  LVA                         VDT+APV
Sbjct: 533  NNSVNGIVAGPGTNSTGAPVTAEAGLVATA-----------AALEAAADAGKLVDTSAPV 581

Query: 262  DQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALT 83
            DQGTESN LHNF+LPISLA LQK+GG QG Q GF+ARKQRIE+T+G++V +NDGRRH+LT
Sbjct: 582  DQGTESNMLHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRRHSLT 641

Query: 82   LTVSDYKRRRGLL 44
            L+VSDYKRRRGLL
Sbjct: 642  LSVSDYKRRRGLL 654


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 [Fragaria vesca
            subsp. vesca]
          Length = 657

 Score =  620 bits (1598), Expect = e-174
 Identities = 362/667 (54%), Positives = 434/667 (65%), Gaps = 11/667 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQ-SRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP 1835
            MA      L+AAGRT  +SGRK++ S   S+ RR+                         
Sbjct: 1    MADLDDLLLEAAGRT--SSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRK 58

Query: 1834 --GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSA--PSVGSDLYXXXXXXXELG 1667
              GSQVPLKKR DP E                       +    VGSDLY       +L 
Sbjct: 59   PSGSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLA 118

Query: 1666 KMSELDREMILAERSTKIDDYRLKKKARET--SSKVEMKARKAXXXXXXXXXXXXXXSDK 1493
            +MSEL RE+IL++R+ K DD  LK+K R      K     +                +D+
Sbjct: 119  EMSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADR 178

Query: 1492 PAAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKRS---VPLPTLPSSE 1322
             AAK DALNELRAKR+KQQDPEA+RK+RD + G   S   S   K+S   V   +   S+
Sbjct: 179  AAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNFSHTIKKSFSAVRRSSSSQSD 238

Query: 1321 SEGESKADGKDKSPDDNEESSEDITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEEII 1142
            SE  S +D    S DD  +S +D  G++   L +EDIK ITIRRS+LAKW MEPFFEE+I
Sbjct: 239  SESRSHSDDDGSSADDAIDS-DDERGNQ--GLTFEDIKEITIRRSRLAKWLMEPFFEELI 295

Query: 1141 VGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAARW 962
            VGC VRVGIGKT+SG  IYRLC V NVD++DPDRQYKLEN+ THK+LN VWGNE SAARW
Sbjct: 296  VGCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNENSAARW 355

Query: 961  QMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQMLQ 782
            QMAMVSDSLP+EEE+  WVREVE+ GGR+P+ ++V EK E I+K N++VYSA TVKQM+Q
Sbjct: 356  QMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAKTVKQMIQ 415

Query: 781  EKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEKAV 602
            EKKS +SRPLN+A EKDRLR+E+E+A+S+HDDAEVERI+AR+++L E  +QS+ KD KAV
Sbjct: 416  EKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKARLEQL-EARQQSQGKDSKAV 474

Query: 601  KLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXXXX 422
            +LAEMNRKNR +NFKNAS LKPV T LKAGEAGYDPFSRRWTRSRNYYVSKP        
Sbjct: 475  RLAEMNRKNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPDEQKDDAE 534

Query: 421  XXXXGDTGTA-VEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTES 245
                     A VE  G G +VA                         +DT APVDQGT S
Sbjct: 535  ANAVAAESLAEVETNGTGGVVA----VRAGLEATAAALEAAAGAGKLIDTMAPVDQGTSS 590

Query: 244  NSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSDY 65
            N LHNF+LPISLA LQKFGGPQG Q GF+ARKQRIEAT+G +VP++DGRRHALTL+VSDY
Sbjct: 591  NPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDGRRHALTLSVSDY 650

Query: 64   KRRRGLL 44
            KRRRGLL
Sbjct: 651  KRRRGLL 657


>gb|KHN07280.1| RNA polymerase-associated protein RTF1 like [Glycine soja]
          Length = 646

 Score =  619 bits (1595), Expect = e-174
 Identities = 362/668 (54%), Positives = 439/668 (65%), Gaps = 12/668 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRTG  +GR   S   SR R +                          
Sbjct: 1    MADLENLLLEAAGRTG-TAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAP--SVGSDLYXXXXXXXELGK 1664
             GSQVPLKKR DP E+                     S+   ++G DLY       +L +
Sbjct: 60   SGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARETSSKVEMKA-RKAXXXXXXXXXXXXXXSDKPA 1487
            M+EL REMIL++R+TK DD  L  K      K +  A RK               S   +
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRS 179

Query: 1486 AKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR----SVPLPTLPSSES 1319
            AK+DALNELRAKR+KQQDPEA+R++R+ +   G   +  SP KR    S  L +   SES
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGS--RHFSPPKRKPFTSTSLSSSSHSES 237

Query: 1318 EGESKADGKDKSPDDNEESSED---ITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEE 1148
            E  S +D +  + D     S+D   + GS+  +  ++DIK ITIRRSKLAKWFMEPFFEE
Sbjct: 238  ESRSHSDDEGSTGDGGIADSDDDRALAGSEGPS--FQDIKEITIRRSKLAKWFMEPFFEE 295

Query: 1147 IIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAA 968
            +IVGCFVRVGIG++++G  IYRLC+VKNVDA++PDRQYKLEN+ T+K+LN VWGNE+SAA
Sbjct: 296  LIVGCFVRVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAA 354

Query: 967  RWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQM 788
            RWQMAMVSDS PIEEEFK WV+EV+  GGRMP+ ++V EK + IQK  ++VYSAATVKQM
Sbjct: 355  RWQMAMVSDSAPIEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQM 414

Query: 787  LQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEK 608
            LQEKKS ++RPLNVAAEKDRLR+E+E+A+S+HD+AEVERI+ R++EL E SRQ+KQKD K
Sbjct: 415  LQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQEL-EASRQAKQKDAK 473

Query: 607  AVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXX 428
            A+KLAEMNRKNR ENFKNASELKPVN  LKAGEAGYDPFSRRWTRSRNYY +KP      
Sbjct: 474  ALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAA 533

Query: 427  XXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTE 248
                  G+    V GAG     AP                        VDT+APVDQGTE
Sbjct: 534  GNNIVNGN----VAGAGSNGTGAPVT-----------VEAGMVAIAAAVDTSAPVDQGTE 578

Query: 247  SNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSD 68
            SN LHNF+LPISLA LQK+GG  G Q GF+ARKQRIE+T+G++V +NDGRRHALTLTVSD
Sbjct: 579  SNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSD 638

Query: 67   YKRRRGLL 44
            YKRRRGLL
Sbjct: 639  YKRRRGLL 646


>gb|KHN13191.1| RNA polymerase-associated protein RTF1 like [Glycine soja]
          Length = 646

 Score =  618 bits (1594), Expect = e-174
 Identities = 362/668 (54%), Positives = 439/668 (65%), Gaps = 12/668 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRTG  +GR   S   SR R +                          
Sbjct: 1    MADLENLLLEAAGRTG-TAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAP--SVGSDLYXXXXXXXELGK 1664
             GSQVPLKKR DP E+                     S+   ++G DLY       +L +
Sbjct: 60   SGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARETSSKVEMKA-RKAXXXXXXXXXXXXXXSDKPA 1487
            M+EL REMIL++R+TK DD  L  K      K +  A RK               S   +
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRS 179

Query: 1486 AKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR----SVPLPTLPSSES 1319
            AK+DALNELRAKR+KQQDPEA+R++R+ +   G   +  SP KR    S  L +   SES
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAG--PRHFSPPKRKTFTSTSLSSSSHSES 237

Query: 1318 EGESKADGKDKSPDDNEESSED---ITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEE 1148
            E  S +D +  + D     S+D   + GS+  +  ++DIK ITIRRSKLAKWFMEPFFEE
Sbjct: 238  ESRSHSDDEGSTGDGGIADSDDDRALAGSEGPS--FQDIKEITIRRSKLAKWFMEPFFEE 295

Query: 1147 IIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAA 968
            +IVGCFVRVGIG++++G  IYRLC+VKNVDA++PDRQYKLEN+ T+K+LN VWGNE+SAA
Sbjct: 296  LIVGCFVRVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAA 354

Query: 967  RWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQM 788
            RWQMAMVSDS PIEEEFK WV+EV+  GGRMP+ ++V EK + IQK  ++VYSAATVKQM
Sbjct: 355  RWQMAMVSDSAPIEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQM 414

Query: 787  LQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEK 608
            LQEKKS ++RPLNVAAEKDRLR+E+E+A+S+HD+AEVERI+ R++EL E SRQ+KQKD K
Sbjct: 415  LQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQEL-EASRQAKQKDAK 473

Query: 607  AVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXX 428
            A+KLAEMNRKNR ENFKNASELKPVN  LKAGEAGYDPFSRRWTRSRNYY +KP      
Sbjct: 474  ALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAA 533

Query: 427  XXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTE 248
                  G+    V GAG     AP                        VDT+APVDQGTE
Sbjct: 534  GNNIVNGN----VAGAGSNGTGAPVT-----------VEAGMVAIAAAVDTSAPVDQGTE 578

Query: 247  SNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSD 68
            SN LHNF+LPISLA LQK+GG  G Q GF+ARKQRIE+T+G++V +NDGRRHALTLTVSD
Sbjct: 579  SNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSD 638

Query: 67   YKRRRGLL 44
            YKRRRGLL
Sbjct: 639  YKRRRGLL 646


>gb|KHN10031.1| RNA polymerase-associated protein RTF1 like [Glycine soja]
          Length = 646

 Score =  618 bits (1594), Expect = e-174
 Identities = 362/668 (54%), Positives = 439/668 (65%), Gaps = 12/668 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRTG  +GR   S   SR R +                          
Sbjct: 1    MADLENLLLEAAGRTG-TAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAP--SVGSDLYXXXXXXXELGK 1664
             GSQVPLKKR DP E+                     S+   ++G DLY       +L +
Sbjct: 60   SGSQVPLKKRLDPTERDDDLGSQEEADDDGRNDHDGDSSDESNIGDDLYKDEDDRRKLSE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARETSSKVEMKA-RKAXXXXXXXXXXXXXXSDKPA 1487
            M+EL REMIL++R+TK DD  L  K      K +  A RK               S   +
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRS 179

Query: 1486 AKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR----SVPLPTLPSSES 1319
            AK+DALNELRAKR+KQQDPEA+R++R+ +   G   +  SP KR    S  L +   SES
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGS--RHFSPPKRKPFTSTSLSSSSHSES 237

Query: 1318 EGESKADGKDKSPDDNEESSED---ITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEE 1148
            E  S +D +  + D     S+D   + GS+  +  ++DIK ITIRRSKLAKWFMEPFFEE
Sbjct: 238  ESRSHSDDEGSTGDGGIADSDDDRALAGSEGPS--FQDIKEITIRRSKLAKWFMEPFFEE 295

Query: 1147 IIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAA 968
            +IVGCFVRVGIG++++G  IYRLC+VKNVDA++PDRQYKLEN+ T+K+LN VWGNE+SAA
Sbjct: 296  LIVGCFVRVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAA 354

Query: 967  RWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQM 788
            RWQMAMVSDS PIEEEFK WV+EV+  GGRMP+ ++V EK + IQK  ++VYSAATVKQM
Sbjct: 355  RWQMAMVSDSAPIEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQM 414

Query: 787  LQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEK 608
            LQEKKS ++RPLNVAAEKDRLR+E+E+A+S+HD+AEVERI+ R++EL E SRQ+KQKD K
Sbjct: 415  LQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQEL-EASRQAKQKDAK 473

Query: 607  AVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXX 428
            A+KLAEMNRKNR ENFKNASELKPVN  LKAGEAGYDPFSRRWTRSRNYY +KP      
Sbjct: 474  ALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAA 533

Query: 427  XXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTE 248
                  G+    V GAG     AP                        VDT+APVDQGTE
Sbjct: 534  GNNIVNGN----VAGAGSNGTGAPVT-----------VEAGMVAIAAAVDTSAPVDQGTE 578

Query: 247  SNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSD 68
            SN LHNF+LPISLA LQK+GG  G Q GF+ARKQRIE+T+G++V +NDGRRHALTLTVSD
Sbjct: 579  SNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSD 638

Query: 67   YKRRRGLL 44
            YKRRRGLL
Sbjct: 639  YKRRRGLL 646


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  616 bits (1589), Expect = e-173
 Identities = 361/668 (54%), Positives = 439/668 (65%), Gaps = 12/668 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRTG  +GR   S   SR R +                          
Sbjct: 1    MADLENLLLEAAGRTG-TAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAP--SVGSDLYXXXXXXXELGK 1664
             GSQVPLKKR DP E+                     S+   ++G DLY       +L +
Sbjct: 60   SGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSE 119

Query: 1663 MSELDREMILAERSTKIDDYRLKKKARETSSKVEMKA-RKAXXXXXXXXXXXXXXSDKPA 1487
            M+EL REMIL++R+TK DD  L  K      K +  A RK               S   +
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRS 179

Query: 1486 AKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR----SVPLPTLPSSES 1319
            AK+DALNELRAKR+KQQDPEA+R++R+ +   G   +  SP KR    S  L +   SES
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAG--PRHFSPPKRKTFTSTSLSSSSHSES 237

Query: 1318 EGESKADGKDKSPDDNEESSED---ITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFEE 1148
            E  S +D +  + D     S+D   + GS+  +  ++DIK ITIRRSKLAKWFMEPFFEE
Sbjct: 238  ESRSHSDDEGSTGDGGIADSDDDRALAGSEGPS--FQDIKEITIRRSKLAKWFMEPFFEE 295

Query: 1147 IIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAA 968
            +IVGCFVRVGIG++++G  IYRLC+VKNVDA++PDRQYKLEN+ T+K+LN VWGNE+SAA
Sbjct: 296  LIVGCFVRVGIGRSKTG-PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAA 354

Query: 967  RWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQM 788
            RWQMAMVSDS P+EEEFK WV+EV+  GGRMP+ ++V EK + IQK  ++VYSAATVKQM
Sbjct: 355  RWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQM 414

Query: 787  LQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEK 608
            LQEKKS ++RPLNVAAEKDRLR+E+E+A+S+HD+AEVERI+ R++EL E SRQ+KQKD K
Sbjct: 415  LQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQEL-EASRQAKQKDAK 473

Query: 607  AVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXX 428
            A+KLAEMNRKNR ENFKNASELKPVN  LKAGEAGYDPFSRRWTRSRNYY +KP      
Sbjct: 474  ALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAA 533

Query: 427  XXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTE 248
                  G+    V GAG     AP                        VDT+APVDQGTE
Sbjct: 534  GNNIVNGN----VAGAGSNATGAPVT-AEAGMVATAAALEAAAGAGKLVDTSAPVDQGTE 588

Query: 247  SNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSD 68
            SN LHNF+LPISLA LQK+GG  G Q GF+ARKQRIE+T+G++V +NDGRRHALTLTVSD
Sbjct: 589  SNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSD 648

Query: 67   YKRRRGLL 44
            YKRRRGLL
Sbjct: 649  YKRRRGLL 656


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|778690563|ref|XP_011653135.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|700198089|gb|KGN53247.1| hypothetical protein
            Csa_4G038650 [Cucumis sativus]
          Length = 660

 Score =  610 bits (1573), Expect = e-171
 Identities = 358/678 (52%), Positives = 437/678 (64%), Gaps = 22/678 (3%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRT   +GR   S   SR +RE                          
Sbjct: 1    MADLENLLLEAAGRTNA-AGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAPS---VGSDLYXXXXXXXELG 1667
             GSQVPLKKR DP E+                      +     VG DLY       +L 
Sbjct: 60   SGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLA 119

Query: 1666 KMSELDREMILAERSTKIDDYRLKK--KARETSSKVEMKARKAXXXXXXXXXXXXXXSDK 1493
             MSEL REMIL++R++K +D  L +  +A+    K     ++               +D+
Sbjct: 120  GMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADR 179

Query: 1492 PAAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKRSVPLPTLPSS---E 1322
             AAK DALNELRAKR+KQQDPEA+RK+RD + G   S + S   ++    P+L SS   E
Sbjct: 180  AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSE 239

Query: 1321 SEGESKADGKDKSPDDNEESSED---ITGSKFDTLKYEDIKAITIRRSKLAKWFMEPFFE 1151
            SE   ++D +  + D     S+D   I GS   T  +EDIK +TIRRSKLAKW MEPFFE
Sbjct: 240  SESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPT--FEDIKEVTIRRSKLAKWLMEPFFE 297

Query: 1150 EIIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASA 971
            E+IVGCFVRVGIG++RSG  IYRLCLV+NVDAT+PDRQYKLEN+ITHK+LN +WGNEASA
Sbjct: 298  ELIVGCFVRVGIGRSRSG-PIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASA 356

Query: 970  ARWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQ 791
            ARWQMAMVSDS P+E+E+K WV+EVER GGRM + +++ EK E IQK+N++VYSAATVKQ
Sbjct: 357  ARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQ 416

Query: 790  MLQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDE 611
            MLQ+KKS ++RPLN+AAEKDRLR+E++VA S++D+AEVERI+ R+++L E SR+ + KD 
Sbjct: 417  MLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQL-EASRRLQMKDA 475

Query: 610  KAVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXX 431
            KA++LAEMNRKNR ENFKNASEL+P+   LKAGEAGYDPFSRRWTRSRNYYVS       
Sbjct: 476  KAIRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSN------ 528

Query: 430  XXXXXXXGDTGTAVEGAGDGNLVAPT---------NXXXXXXXXXXXXXXXXXXXXXXVD 278
                   G+   A E AG+ + V P                                 VD
Sbjct: 529  ------AGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVD 582

Query: 277  TNAPVDQGTESNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGR 98
            TNAPVD GTESNSLHNF+LPISLA LQKFGG  G Q GFLARKQRIEAT+G +VP+NDGR
Sbjct: 583  TNAPVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGR 642

Query: 97   RHALTLTVSDYKRRRGLL 44
            RHALTLTVSDYKRRRGLL
Sbjct: 643  RHALTLTVSDYKRRRGLL 660


>ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Gossypium
            raimondii] gi|763802543|gb|KJB69481.1| hypothetical
            protein B456_011G025800 [Gossypium raimondii]
            gi|763802544|gb|KJB69482.1| hypothetical protein
            B456_011G025800 [Gossypium raimondii]
            gi|763802545|gb|KJB69483.1| hypothetical protein
            B456_011G025800 [Gossypium raimondii]
          Length = 660

 Score =  608 bits (1569), Expect = e-171
 Identities = 355/668 (53%), Positives = 436/668 (65%), Gaps = 12/668 (1%)
 Frame = -2

Query: 2011 MAXXXXXXLQAAGRTGGNSGRKNQSRQHSRWRREXXXXXXXXXXXXXXXXXXXXXXKHP- 1835
            MA      L+AAGRTG   GR   S   SR RRE                          
Sbjct: 1    MADLENLLLEAAGRTG-TGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKP 59

Query: 1834 -GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXSAPS---VGSDLYXXXXXXXELG 1667
             GSQVPLKKR DP E+                      +     VG DLY       +L 
Sbjct: 60   SGSQVPLKKRLDPAERDDDQGSQEEGDYNDAGSGRERDSSDESDVGDDLYKNEEDRRQLA 119

Query: 1666 KMSELDREMILAERSTKIDDYRLKKKARET--SSKVEMKARKAXXXXXXXXXXXXXXSDK 1493
            +++EL+REMIL+ER+ K  D +  +K R    + +     R+               +D+
Sbjct: 120  QLTELEREMILSERADKRGDKKFTEKIRSKRENDRPSRSQRETPPLPSRGVRSSARSADR 179

Query: 1492 PAAKSDALNELRAKRMKQQDPEAYRKMRDTAGGVGFSVKDSSPAKR----SVPLPTLPSS 1325
             AAK DALNELRAKR+KQQDPEA+RK+RD + G   + +  SP KR    +  L +   S
Sbjct: 180  AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGN-RGLSPVKRKPFTASSLSSSSQS 238

Query: 1324 ESEGESKADGKDKSPDDNEESSEDITGSKFDT-LKYEDIKAITIRRSKLAKWFMEPFFEE 1148
            ESE  S ++ +  + D     SED  G+       + DIK ITIRRSKLAKW MEPFFEE
Sbjct: 239  ESESRSNSEDEGSTGDGGMVDSEDERGTWGPNGPTFNDIKEITIRRSKLAKWLMEPFFEE 298

Query: 1147 IIVGCFVRVGIGKTRSGHSIYRLCLVKNVDATDPDRQYKLENRITHKWLNCVWGNEASAA 968
            +IVGCFVRVGIG++++G +IYRLC+V+NVDATDPDR YKLEN+ T+K+LN VWGNE+SAA
Sbjct: 299  LIVGCFVRVGIGRSKTG-AIYRLCMVRNVDATDPDRTYKLENKTTYKYLNVVWGNESSAA 357

Query: 967  RWQMAMVSDSLPIEEEFKDWVREVERCGGRMPTLKEVTEKSEEIQKINSYVYSAATVKQM 788
            RWQMAM+SDS P+EEEF+  +REVER GGRMP+ ++V EK E +QK  ++VYSAATVKQM
Sbjct: 358  RWQMAMISDSPPLEEEFRQLIREVERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQM 417

Query: 787  LQEKKSTASRPLNVAAEKDRLRKEIEVAKSRHDDAEVERIQARMKELEEISRQSKQKDEK 608
            LQEKKS++SRPLNVAAEKDRLR+++E+A+S+HDD EVERI+ R+++L E SRQS++KD K
Sbjct: 418  LQEKKSSSSRPLNVAAEKDRLRRDLEIAQSKHDDVEVERIKKRLQQL-EASRQSQEKDAK 476

Query: 607  AVKLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPXXXXXX 428
            AV+LAEMNRKNR ENFKNAS LKPVNT LKAGEAGYDPFSRRWTRSRNYY +K       
Sbjct: 477  AVRLAEMNRKNRVENFKNASGLKPVNTGLKAGEAGYDPFSRRWTRSRNYYNAK--APGGD 534

Query: 427  XXXXXXGDTGTAVEGAGDGNLVAPTNXXXXXXXXXXXXXXXXXXXXXXVDTNAPVDQGTE 248
                  GDT  A+ G+G+GN  A                         VDTNAPVD+GTE
Sbjct: 535  AAAVANGDTNGAI-GSGNGN-DAGAAAAEAGRAATAAALQEAAGAGKLVDTNAPVDEGTE 592

Query: 247  SNSLHNFDLPISLAGLQKFGGPQGVQLGFLARKQRIEATIGYKVPDNDGRRHALTLTVSD 68
            SN LH+F+LPISL  L+KFGG +G   GF+ARKQRIEAT+G +VP+NDGRRHALTLTVSD
Sbjct: 593  SNMLHDFELPISLDVLRKFGGHEGAVAGFMARKQRIEATVGCRVPENDGRRHALTLTVSD 652

Query: 67   YKRRRGLL 44
            YKRRRGLL
Sbjct: 653  YKRRRGLL 660