BLASTX nr result
ID: Anemarrhena21_contig00002880
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Anemarrhena21_contig00002880
(1857 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008808794.1| PREDICTED: RNA polymerase sigma factor sigA ... 660 0.0
ref|XP_010910226.1| PREDICTED: RNA polymerase sigma factor sigA ... 636 e-179
ref|XP_010910228.1| PREDICTED: RNA polymerase sigma factor sigA ... 634 e-178
ref|XP_009382828.1| PREDICTED: RNA polymerase sigma factor sigA-... 617 e-173
ref|XP_009397520.1| PREDICTED: RNA polymerase sigma factor sigA-... 616 e-173
ref|XP_010266387.1| PREDICTED: RNA polymerase sigma factor sigA-... 614 e-173
ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-... 603 e-169
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-... 581 e-163
gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sin... 580 e-162
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr... 579 e-162
gb|AKC88633.1| sigma factor [Melianthus villosus] 578 e-162
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun... 575 e-161
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [... 575 e-161
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g... 574 e-161
ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA ... 574 e-161
ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA ... 573 e-160
ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-... 572 e-160
ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA ... 572 e-160
gb|KHG03684.1| RNA polymerase sigma factor rpoD [Gossypium arbor... 572 e-160
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei... 572 e-160
>ref|XP_008808794.1| PREDICTED: RNA polymerase sigma factor sigA [Phoenix dactylifera]
gi|672177404|ref|XP_008808795.1| PREDICTED: RNA
polymerase sigma factor sigA [Phoenix dactylifera]
gi|672177406|ref|XP_008808796.1| PREDICTED: RNA
polymerase sigma factor sigA [Phoenix dactylifera]
gi|672177408|ref|XP_008808797.1| PREDICTED: RNA
polymerase sigma factor sigA [Phoenix dactylifera]
Length = 508
Score = 660 bits (1703), Expect = 0.0
Identities = 353/507 (69%), Positives = 391/507 (77%), Gaps = 3/507 (0%)
Frame = -1
Query: 1689 MATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFSTN 1510
MATAAVIGLS GKR+L TSFY +DLA+KLF V DHGS QFS +STK+ I A+R S+F TN
Sbjct: 1 MATAAVIGLSTGKRLLSTSFYPADLAEKLFAVPDHGSMQFSTSSTKNTIAAKRSSNFGTN 60
Query: 1509 FPANRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLEKQ 1330
P+NRH+ IKALKEHVDT A + ++WF V ++LQKSMLEKQ
Sbjct: 61 IPSNRHSQAIKALKEHVDTAALSTADAWFRRPDPLEDGESDLEYSLEVLILLQKSMLEKQ 120
Query: 1329 WKLSFNQMRTVVAPGEGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIM---DKGKHL 1159
WKL F Q++TV P E KK EVIRSGISA +CF ++A M ++GK L
Sbjct: 121 WKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTVTRRRCFNRSAYMEPFNGGEEGKEL 180
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
R+ VSPELLQT + GYVRGTVSE+LLTHAEVVHLS+KI K GFEP+
Sbjct: 181 RSTVSPELLQTRVRGYVRGTVSENLLTHAEVVHLSRKIRAGLSLEEKRMKLKEKLGFEPS 240
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
DKQLAS LRMS AEL SKL ECSLAREKLAMSNVRLVMSIAQKYDNLGAEMAD
Sbjct: 241 DKQLASFLRMSHAELHSKLTECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADLIQGGLI 300
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDSSKG KISTYVYWWIRQGVSRAL ENSRTLRLPSHL+ERL IRNAKIRL
Sbjct: 301 GLLRGIEKFDSSKGCKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRL 360
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
E++G+ PS+D +AE L +S KKV+NATEAVSKV SLDREAFPSLNGLPGETLHSYIAD N
Sbjct: 361 EDKGVMPSIDNIAESLNMSPKKVKNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADKN 420
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
L NIPWHGFE+WSLKDEVNKLL A L +RER IIRLYYGI NE HTWEDISRQFGLSRER
Sbjct: 421 LANIPWHGFEDWSLKDEVNKLLHATLSKRERAIIRLYYGIGNETHTWEDISRQFGLSRER 480
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVK 178
VRQVGLVALEKLKHAAR+RRLEA+LVK
Sbjct: 481 VRQVGLVALEKLKHAARRRRLEALLVK 507
>ref|XP_010910226.1| PREDICTED: RNA polymerase sigma factor sigA isoform X1 [Elaeis
guineensis]
Length = 593
Score = 636 bits (1640), Expect = e-179
Identities = 344/509 (67%), Positives = 383/509 (75%), Gaps = 3/509 (0%)
Frame = -1
Query: 1695 RMMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFS 1516
R+MA AAV GLS GKR+L TSFY SDLA+KLF V DH S QFS ASTK+ I A++ S+FS
Sbjct: 84 RIMAMAAVFGLSRGKRLLSTSFYPSDLAEKLFAVPDHASMQFSTASTKNTIAAKKSSNFS 143
Query: 1515 TNFPANRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLE 1336
TN +NRH+ IKALKEHVDT A + ++WF V L+LQKSMLE
Sbjct: 144 TNIRSNRHSQAIKALKEHVDTSALSTADTWFQRPDLLEDGESDLEYSLEVLLLLQKSMLE 203
Query: 1335 KQWKLSFNQMRTVVAPGEGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDK---GK 1165
KQ KL F Q++TV P E KK EVIRSGISA CF Q A M +++ GK
Sbjct: 204 KQRKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTITRMTCFNQNAYMEPLNRVKEGK 263
Query: 1164 HLRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFE 985
LR+ VSPELLQ + GYVRGT+S++LL+HAEVVHLS+KI K GFE
Sbjct: 264 ELRSTVSPELLQMHVRGYVRGTISQNLLSHAEVVHLSRKIRAGLSLEENRMKLKEKLGFE 323
Query: 984 PTDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXX 805
P+DKQLAS L MS AEL SKL ECSLAREKLAMSNVRLVMSIAQKYDNLGAEMAD
Sbjct: 324 PSDKQLASFLGMSNAELHSKLTECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADLIQGG 383
Query: 804 XXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKI 625
IEKFDSSKG KISTYVYWWIR GVSRAL ENSRTLRLP+HL+ERL IRNAK+
Sbjct: 384 LIGLLRGIEKFDSSKGCKISTYVYWWIRHGVSRALVENSRTLRLPAHLHERLSLIRNAKV 443
Query: 624 RLEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIAD 445
RLE++GI PS+D +AE L +S+KKVRNATEAVSKV SLDREAFPSLNGLPGETLHSYIAD
Sbjct: 444 RLEDKGIIPSIDNIAESLNMSQKKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIAD 503
Query: 444 NNLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSR 265
NL N PWHGFE WSLKDEV+KLL A L +RER IIRLYYGI ECHTWE ISRQFGLSR
Sbjct: 504 KNLGNNPWHGFENWSLKDEVDKLLRATLNKRERAIIRLYYGIGGECHTWEGISRQFGLSR 563
Query: 264 ERVRQVGLVALEKLKHAARKRRLEAMLVK 178
ERVRQVGLVALEKLKHAAR+RRLEA+LVK
Sbjct: 564 ERVRQVGLVALEKLKHAARRRRLEALLVK 592
>ref|XP_010910228.1| PREDICTED: RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis] gi|743886771|ref|XP_010910229.1| PREDICTED:
RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis] gi|743886775|ref|XP_010910230.1| PREDICTED:
RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis] gi|743886779|ref|XP_010910231.1| PREDICTED:
RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis] gi|743886783|ref|XP_010910232.1| PREDICTED:
RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis] gi|743886789|ref|XP_010910234.1| PREDICTED:
RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis] gi|743886793|ref|XP_010910235.1| PREDICTED:
RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis] gi|743886797|ref|XP_010910236.1| PREDICTED:
RNA polymerase sigma factor sigA isoform X3 [Elaeis
guineensis]
Length = 508
Score = 634 bits (1634), Expect = e-178
Identities = 343/507 (67%), Positives = 381/507 (75%), Gaps = 3/507 (0%)
Frame = -1
Query: 1689 MATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFSTN 1510
MA AAV GLS GKR+L TSFY SDLA+KLF V DH S QFS ASTK+ I A++ S+FSTN
Sbjct: 1 MAMAAVFGLSRGKRLLSTSFYPSDLAEKLFAVPDHASMQFSTASTKNTIAAKKSSNFSTN 60
Query: 1509 FPANRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLEKQ 1330
+NRH+ IKALKEHVDT A + ++WF V L+LQKSMLEKQ
Sbjct: 61 IRSNRHSQAIKALKEHVDTSALSTADTWFQRPDLLEDGESDLEYSLEVLLLLQKSMLEKQ 120
Query: 1329 WKLSFNQMRTVVAPGEGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDK---GKHL 1159
KL F Q++TV P E KK EVIRSGISA CF Q A M +++ GK L
Sbjct: 121 RKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTITRMTCFNQNAYMEPLNRVKEGKEL 180
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
R+ VSPELLQ + GYVRGT+S++LL+HAEVVHLS+KI K GFEP+
Sbjct: 181 RSTVSPELLQMHVRGYVRGTISQNLLSHAEVVHLSRKIRAGLSLEENRMKLKEKLGFEPS 240
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
DKQLAS L MS AEL SKL ECSLAREKLAMSNVRLVMSIAQKYDNLGAEMAD
Sbjct: 241 DKQLASFLGMSNAELHSKLTECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADLIQGGLI 300
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDSSKG KISTYVYWWIR GVSRAL ENSRTLRLP+HL+ERL IRNAK+RL
Sbjct: 301 GLLRGIEKFDSSKGCKISTYVYWWIRHGVSRALVENSRTLRLPAHLHERLSLIRNAKVRL 360
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
E++GI PS+D +AE L +S+KKVRNATEAVSKV SLDREAFPSLNGLPGETLHSYIAD N
Sbjct: 361 EDKGIIPSIDNIAESLNMSQKKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADKN 420
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
L N PWHGFE WSLKDEV+KLL A L +RER IIRLYYGI ECHTWE ISRQFGLSRER
Sbjct: 421 LGNNPWHGFENWSLKDEVDKLLRATLNKRERAIIRLYYGIGGECHTWEGISRQFGLSRER 480
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVK 178
VRQVGLVALEKLKHAAR+RRLEA+LVK
Sbjct: 481 VRQVGLVALEKLKHAARRRRLEALLVK 507
>ref|XP_009382828.1| PREDICTED: RNA polymerase sigma factor sigA-like [Musa acuminata
subsp. malaccensis]
Length = 491
Score = 617 bits (1591), Expect = e-173
Identities = 326/505 (64%), Positives = 377/505 (74%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMAT+AV+GLS GKR+L +SF +DLA+KLFP++D + F ASTKS+++A++PS F
Sbjct: 1 MMATSAVVGLSTGKRLLTSSFCPTDLAEKLFPILDQTTLPFPTASTKSVVVAQKPSPFRP 60
Query: 1512 NFPANRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLEK 1333
N P RH IKALKEHV T+AP T+ ++LQKSMLEK
Sbjct: 61 NAPPTRHVPIIKALKEHVHTLAPSPTD---------------LESSLEALILLQKSMLEK 105
Query: 1332 QWKLSFNQMRTVVAPGEGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHLRA 1153
QW+L F QM TV APG G + E+ RSGISA KC M + + LR+
Sbjct: 106 QWELPFTQMTTVAAPGNGCRVPEIARSGISARERRMISRRKCIGHRDAMAPASRVRQLRS 165
Query: 1152 AVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPTDK 973
VSPELL + +GYVRGTVSE LLTHAEVV+LSKKI K G+EPTDK
Sbjct: 166 CVSPELLNSDASGYVRGTVSESLLTHAEVVNLSKKIRAGMRVEEHRSRLKEKMGYEPTDK 225
Query: 972 QLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXXXX 793
QLASSLRMSRAEL +K+IECSLAREKLAMSNVRLVMSIAQKYDN+G MAD
Sbjct: 226 QLASSLRMSRAELHTKMIECSLAREKLAMSNVRLVMSIAQKYDNMGTAMADLIQGGLIGL 285
Query: 792 XXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRLEE 613
IEKFD+SKGFKISTYVYWWIRQGV+R L +NSRTLRLP+HL+ERL SIR+AKIRLEE
Sbjct: 286 LRGIEKFDASKGFKISTYVYWWIRQGVTRTLFKNSRTLRLPAHLHERLGSIRHAKIRLEE 345
Query: 612 RGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNNLE 433
+GI PS+DKLAE L +S+KKVRNAT+A S VLS+DREAFPSLNGLPG+TLHSYIAD NLE
Sbjct: 346 KGIAPSIDKLAESLNMSQKKVRNATQAASIVLSIDREAFPSLNGLPGKTLHSYIADRNLE 405
Query: 432 NIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRERVR 253
N PWHGFEEWSLKDEV+KLL L RERDII LY+GIDNECHTWEDI ++FGLSRERVR
Sbjct: 406 NNPWHGFEEWSLKDEVDKLLYMTLSNRERDIISLYHGIDNECHTWEDIGKKFGLSRERVR 465
Query: 252 QVGLVALEKLKHAARKRRLEAMLVK 178
QVGLVA+EKLKHAAR+R+LEAMLVK
Sbjct: 466 QVGLVAMEKLKHAARRRKLEAMLVK 490
>ref|XP_009397520.1| PREDICTED: RNA polymerase sigma factor sigA-like [Musa acuminata
subsp. malaccensis] gi|694997088|ref|XP_009397527.1|
PREDICTED: RNA polymerase sigma factor sigA-like [Musa
acuminata subsp. malaccensis]
gi|694997090|ref|XP_009397536.1| PREDICTED: RNA
polymerase sigma factor sigA-like [Musa acuminata subsp.
malaccensis] gi|694997092|ref|XP_009397544.1| PREDICTED:
RNA polymerase sigma factor sigA-like [Musa acuminata
subsp. malaccensis]
Length = 498
Score = 616 bits (1588), Expect = e-173
Identities = 325/506 (64%), Positives = 381/506 (75%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGL GKR+L +SF +DL +KLF V DHGS FS STK I+A++ SHF +
Sbjct: 1 MMATAAVIGLHTGKRLLSSSFCQTDLTEKLFSVPDHGSLPFSGGSTKCTIVAKKSSHFGS 60
Query: 1512 NFPANRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLEK 1333
N P RH IKAL+E V+T AP ++++W V ++LQKSMLEK
Sbjct: 61 NVPPTRHIPTIKALRERVNTSAPSTSDTW--------SERPDLESSLEVLILLQKSMLEK 112
Query: 1332 QWKLSFNQMRTVVAPGEGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHLRA 1153
QW+L F QM TVVAP + E+ RSGISA KCF A + + K L
Sbjct: 113 QWELPFTQMTTVVAPENSCQMPEITRSGISARERRTISSRKCFSHKANLVPSSRVKQLHP 172
Query: 1152 AVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPTDK 973
+VS ELL++ ++GYVRGTVSE+LLTHAEV +LSK I K GFEPTD+
Sbjct: 173 SVSRELLKSDISGYVRGTVSENLLTHAEVANLSKTIKAGIHIQEQRAKLQDKLGFEPTDR 232
Query: 972 QLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXXXX 793
QLASSLRMSRAEL +K+IE SLAREKLAMSNVRLVMSIAQKYDNLGAEM D
Sbjct: 233 QLASSLRMSRAELHTKMIESSLAREKLAMSNVRLVMSIAQKYDNLGAEMTDLIQAGLIGL 292
Query: 792 XXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRLEE 613
IEKFDSSKGF+ISTYVYWWIRQGVSRAL +NSRTLRLP+HL+ERL SIR+AKIRLEE
Sbjct: 293 LRGIEKFDSSKGFRISTYVYWWIRQGVSRALFKNSRTLRLPTHLHERLSSIRHAKIRLEE 352
Query: 612 RGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNNLE 433
+GITPS+DKLAE L +S+KK+R+AT+A SKVLSLDREAFPSLNGLPGETLHSYIAD N+E
Sbjct: 353 KGITPSIDKLAETLNMSQKKIRDATQAASKVLSLDREAFPSLNGLPGETLHSYIADRNVE 412
Query: 432 NIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRERVR 253
N PW+GFEEWSLKDEV KLL L +RER+IIRLY+GID+ECHTWEDI ++FGLSRERVR
Sbjct: 413 NNPWYGFEEWSLKDEVKKLLYTTLSKREREIIRLYHGIDSECHTWEDIGKRFGLSRERVR 472
Query: 252 QVGLVALEKLKHAARKRRLEAMLVKH 175
QVGL+A+EKLKH AR+R+LEA+LVKH
Sbjct: 473 QVGLIAMEKLKHVARRRKLEAVLVKH 498
>ref|XP_010266387.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
Length = 506
Score = 614 bits (1584), Expect = e-173
Identities = 327/507 (64%), Positives = 379/507 (74%), Gaps = 2/507 (0%)
Frame = -1
Query: 1689 MATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFSTN 1510
MATAAVIGLSAGKR+L ++FY SD+ D+L V DHG +Q+ A S K++IIAR+ S+F +
Sbjct: 1 MATAAVIGLSAGKRLLNSTFYYSDVTDRLLSVYDHGLAQYQATSAKNVIIARKSSNFGDS 60
Query: 1509 FPANRHTVPIKALKEHVDTVAPPST-NSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLEK 1333
FP+N+H I+ALKEHV+T++ PST + W L+LQK +LEK
Sbjct: 61 FPSNQHIQSIRALKEHVNTLSTPSTADVWLQSSGLLEEENTDLDYSVDALLLLQKFLLEK 120
Query: 1332 QWKLSFNQMRTVVAPGEG-NKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHLR 1156
QW LSF Q T APGE +KK +V RSG+SA C + K K L
Sbjct: 121 QWNLSFEQTITDGAPGEETHKKIQVTRSGVSARQRRTSTRRTCLSPKHSIMQPTKRKQLG 180
Query: 1155 AAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPTD 976
+ VSPELL++ GYV+G +SE+LLTHAEVV LSKKI + G +P+D
Sbjct: 181 SMVSPELLKSHY-GYVKGVISEELLTHAEVVQLSKKIKAGLSLEEHKLRLKERLGCDPSD 239
Query: 975 KQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXXX 796
+QLASSLR+SRAEL+SK+IECSLAREKL MSNVRLVMSIAQKYDN+GAEMAD
Sbjct: 240 EQLASSLRISRAELQSKVIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMADLVQGGLIG 299
Query: 795 XXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRLE 616
IEKFDSSKGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERLC IRNAKIRL
Sbjct: 300 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLCLIRNAKIRLA 359
Query: 615 ERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNNL 436
E+GITPS+D++AECL +SEKKVRNATEAV+KV SLDREAFPSLNGLP ETLHSYIADN L
Sbjct: 360 EKGITPSIDRIAECLNMSEKKVRNATEAVNKVFSLDREAFPSLNGLPRETLHSYIADNRL 419
Query: 435 ENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRERV 256
EN PWHG +EWSLKDEVN LL L ERERDIIRLYYG+D EC TWEDISR+ GLSRERV
Sbjct: 420 ENNPWHGVDEWSLKDEVNNLLSTTLEERERDIIRLYYGLDKECLTWEDISRRIGLSRERV 479
Query: 255 RQVGLVALEKLKHAARKRRLEAMLVKH 175
RQVGLVALEKLKHAARK+RL+ MLVKH
Sbjct: 480 RQVGLVALEKLKHAARKKRLDTMLVKH 506
>ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
gi|720061510|ref|XP_010275190.1| PREDICTED: RNA
polymerase sigma factor sigA-like [Nelumbo nucifera]
gi|720061513|ref|XP_010275191.1| PREDICTED: RNA
polymerase sigma factor sigA-like [Nelumbo nucifera]
Length = 516
Score = 603 bits (1555), Expect = e-169
Identities = 317/506 (62%), Positives = 376/506 (74%), Gaps = 1/506 (0%)
Frame = -1
Query: 1689 MATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFSTN 1510
MATAAVIGL+AGKR+L ++FY SD+ D+L V DHG +Q+ A +KS++IA++ S+F +
Sbjct: 11 MATAAVIGLNAGKRLLSSTFYYSDVTDRLASVYDHGLAQYQTAPSKSVVIAKKSSNFDHD 70
Query: 1509 FPANRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLEKQ 1330
F +NRH IKALKEH++T + + + W L+LQKS+LEKQ
Sbjct: 71 FASNRHNQSIKALKEHLNTFSTSTEDMWLQTSDHLEEGNSDLDYSLEALLLLQKSLLEKQ 130
Query: 1329 WKLSFNQ-MRTVVAPGEGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHLRA 1153
W LSF + MR E KK +V RSG+SA K + M + +HL +
Sbjct: 131 WNLSFEKSMRKGAPKEETRKKIQVTRSGVSARQRRTNTRKKYLNTDSSMMQTTRRRHLGS 190
Query: 1152 AVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPTDK 973
VS ELLQ+ L GYV+G +SE+LLTH+EVV LSKKI + G EP+D+
Sbjct: 191 MVSEELLQSRLKGYVKGVISEELLTHSEVVQLSKKIKVGISLEEHKMRLKERLGCEPSDE 250
Query: 972 QLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXXXX 793
QLA+SLR+SRAEL+ K+IECSLAREK+AMSNVRLVMSIA KYDN+GAEMAD
Sbjct: 251 QLATSLRISRAELQMKMIECSLAREKIAMSNVRLVMSIAHKYDNMGAEMADLVQGGLIGL 310
Query: 792 XXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRLEE 613
IEKFDSSKG KISTYVYWWIRQGVSRAL ENSRTLRLPSH++ERL IRNAKIRLEE
Sbjct: 311 LRGIEKFDSSKGCKISTYVYWWIRQGVSRALVENSRTLRLPSHMHERLSLIRNAKIRLEE 370
Query: 612 RGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNNLE 433
+GITPS+D++AECL IS+KKVRNATEAV+KV+SLDREAFPSLNGLPGETLHSYIADN +E
Sbjct: 371 KGITPSIDRIAECLNISQKKVRNATEAVNKVISLDREAFPSLNGLPGETLHSYIADNRIE 430
Query: 432 NIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRERVR 253
N PWHG +EWSLKDEVN LL L ERERDIIRLYYG+D EC TWEDISR+ GLSRERVR
Sbjct: 431 NNPWHGVDEWSLKDEVNNLLNTTLRERERDIIRLYYGLDEECLTWEDISRRIGLSRERVR 490
Query: 252 QVGLVALEKLKHAARKRRLEAMLVKH 175
QVGLVALEKLKHAARK+RL+AMLVKH
Sbjct: 491 QVGLVALEKLKHAARKKRLDAMLVKH 516
>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
polymerase sigma factor sigA-like isoform X2 [Citrus
sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
polymerase sigma factor sigA-like isoform X3 [Citrus
sinensis]
Length = 508
Score = 581 bits (1498), Expect = e-163
Identities = 308/508 (60%), Positives = 371/508 (73%), Gaps = 2/508 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGLSAGKR+L +SFY SD+++K + D GS+ STK+++ A++ S+++
Sbjct: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLE 1336
+FP+ NR T PIKALKEHVDT + W L+LQKSMLE
Sbjct: 61 SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120
Query: 1335 KQWKLSFNQMRTVVAPGEG-NKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHL 1159
KQW LSF + +P + +KK V SG+SA K Q + + K L
Sbjct: 121 KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQNGSKQL 180
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
R+ +SPEL+Q L GYV+G VSE+LLTHAEVV LSKKI + G EP+
Sbjct: 181 RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
+QLA+SLR+SR EL+S L+ECSLAREKL MSNVRLVMSIAQ+YDN+GA+MAD
Sbjct: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDSSKGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNAK+RL
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
EE+G+TPSVD++AE L +S+KKVRNATEA+ KV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
+EN PWHG ++W+LKDEVNKL+ LGERER+IIRLYYG+D EC TWEDIS++ GLSRER
Sbjct: 421 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVKH 175
VRQVGLVALEKLKHAARK+++EAMLVKH
Sbjct: 481 VRQVGLVALEKLKHAARKKKMEAMLVKH 508
>gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
gi|641828897|gb|KDO48033.1| hypothetical protein
CISIN_1g010521mg [Citrus sinensis]
Length = 508
Score = 580 bits (1496), Expect = e-162
Identities = 308/508 (60%), Positives = 371/508 (73%), Gaps = 2/508 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGLSAGKR+L +SFY SD+++K + D GS+ STK+++ A++ S+++
Sbjct: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLE 1336
+FP+ NR T PIKALKEHVDT + W L+LQKSMLE
Sbjct: 61 SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120
Query: 1335 KQWKLSFNQMRTVVAPGEG-NKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHL 1159
KQW LSF + +P + +KK V SG+SA K Q + + K L
Sbjct: 121 KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
R+ +SPEL+Q L GYV+G VSE+LLTHAEVV LSKKI + G EP+
Sbjct: 181 RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
+QLA+SLR+SR EL+S L+ECSLAREKL MSNVRLVMSIAQ+YDN+GA+MAD
Sbjct: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDSSKGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNAK+RL
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
EE+G+TPSVD++AE L +S+KKVRNATEA+ KV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
+EN PWHG ++W+LKDEVNKL+ LGERER+IIRLYYG+D EC TWEDIS++ GLSRER
Sbjct: 421 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVKH 175
VRQVGLVALEKLKHAARK+++EAMLVKH
Sbjct: 481 VRQVGLVALEKLKHAARKKKMEAMLVKH 508
>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
gi|557539599|gb|ESR50643.1| hypothetical protein
CICLE_v10031289mg [Citrus clementina]
Length = 508
Score = 579 bits (1493), Expect = e-162
Identities = 307/508 (60%), Positives = 371/508 (73%), Gaps = 2/508 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGLSAGKR+L +SFY SD+++K + D GS+ STK+++ A++ S+++
Sbjct: 1 MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPSTNSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLE 1336
+FP+ NR T PIKALKEHVDT + W L+LQKSMLE
Sbjct: 61 SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120
Query: 1335 KQWKLSFNQMRTVVAPGEG-NKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHL 1159
KQW LSF + +P + +KK V SG+SA K Q + + K L
Sbjct: 121 KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQNGSKQL 180
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
R+ +SPEL+Q L GYV+G VSE+LLTHAEVV LSKKI + G EP+
Sbjct: 181 RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
+QLA+SLR+SR EL+S L+ECSLAREKL MSNVRLVMSIAQ+YDN+GA+MAD
Sbjct: 241 MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLI 300
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDSSKGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNAK+RL
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
EE+G+TP+VD++AE L +S+KKVRNATEA+ KV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 EEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
+EN PWHG ++W+LKDEVNKL+ LGERER+IIRLYYG+D EC TWEDIS++ GLSRER
Sbjct: 421 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVKH 175
VRQVGLVALEKLKHAARK+++EAMLVKH
Sbjct: 481 VRQVGLVALEKLKHAARKKKMEAMLVKH 508
>gb|AKC88633.1| sigma factor [Melianthus villosus]
Length = 506
Score = 578 bits (1491), Expect = e-162
Identities = 312/508 (61%), Positives = 373/508 (73%), Gaps = 3/508 (0%)
Frame = -1
Query: 1689 MATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFSTN 1510
MATAAVIGLSAGKR+L +S Y SD A+KL DHG ++A TK+++IA++ S+ S
Sbjct: 1 MATAAVIGLSAGKRLLSSSLYYSDYAEKLSYANDHG--HYNATPTKTVVIAKKSSNCSPR 58
Query: 1509 FPA-NRHTVPIKALKEHVDTVAPPST-NSWFXXXXXXXXXXXXXXXXXXVFLMLQKSMLE 1336
FP+ NR T IKALKEHVD ++ PST SWF L+LQKSMLE
Sbjct: 59 FPSSNRKTQSIKALKEHVDDISGPSTAESWFQRSNDVDEQNFDIEYSVEALLLLQKSMLE 118
Query: 1335 KQWKLSFNQ-MRTVVAPGEGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHL 1159
KQW LSF++ M T + + K+ V SG+SA K + + M + L
Sbjct: 119 KQWNLSFDKTMLTDLVKEKTCKRIPVTCSGVSARQRRMSNKRKILSENSSMMQTSRCNRL 178
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
R + PEL+Q GYV+G VSE+LL+HAEVVHLSKKI + G EP+
Sbjct: 179 RTIIGPELMQNRFKGYVKGVVSEELLSHAEVVHLSKKIKCGLSLEEHKLRLKKRLGCEPS 238
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
D+QLA+SLR+SRAELRSK IE LAREKLAMSNVRLVMSIAQ+YDN+GAEM+D
Sbjct: 239 DEQLATSLRISRAELRSKWIESGLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLI 298
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDS+KGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNAKIRL
Sbjct: 299 GLLRGIEKFDSAKGFKISTYVYWWIRQGVSRALIENSRTLRLPTHLHERLGLIRNAKIRL 358
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
EE+GITPS+++LAECL +S+KK+RNATEA+SKV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 359 EEKGITPSIERLAECLNMSKKKIRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 418
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
L+N PWHG +EW+LKDEV KL+ LGERER+IIRLY+G+DNEC TWEDIS++ GLSRER
Sbjct: 419 LDNNPWHGVDEWALKDEVKKLIEMTLGEREREIIRLYHGLDNECLTWEDISKRIGLSRER 478
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVKH 175
VRQVGLVA+EKLKHAAR++ +EAMLVKH
Sbjct: 479 VRQVGLVAMEKLKHAARRKHMEAMLVKH 506
>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
gi|462415485|gb|EMJ20222.1| hypothetical protein
PRUPE_ppa004393mg [Prunus persica]
Length = 512
Score = 575 bits (1483), Expect = e-161
Identities = 314/512 (61%), Positives = 375/512 (73%), Gaps = 6/512 (1%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDH-GSSQFSAASTKSIIIARRPSHFS 1516
MMATAAVIGLS GKR+L +SFY SD+ +KLF + DH G +STK+++ AR+PS+ S
Sbjct: 1 MMATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCS 60
Query: 1515 TNFPA-NRHTVPIKALKEHVDTVAPPS--TNSWFXXXXXXXXXXXXXXXXXXVFLMLQKS 1345
+ FP+ NR I+ALKEHV T + PS T WF L+LQKS
Sbjct: 61 SRFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKS 120
Query: 1344 MLEKQWKLSFNQMRTVVAPGEG-NKKAEVIRSGISAXXXXXXXXXK-CFKQTARMGIMDK 1171
MLEKQW LSF + + + +KK V SG+SA + F ++ +
Sbjct: 121 MLEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVMHPST 180
Query: 1170 GKHLRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFG 991
K LRA VSPELLQ + GYV+G +SEDLLTH EVV LSKKI + G
Sbjct: 181 NKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERLG 240
Query: 990 FEPTDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXX 811
EP+D+QLA+SLR+SRA+L+SKLIEC LAREKLAMSNVRLVMSIAQ+YDN+GAEMAD
Sbjct: 241 CEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQ 300
Query: 810 XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNA 631
IEKFDSSKGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNA
Sbjct: 301 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 360
Query: 630 KIRLEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYI 451
KIRLEE+GITPS+D++AE L +S+KKVRNATEA+SKV SLDR+AFPSLNGLPGET HSYI
Sbjct: 361 KIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYI 420
Query: 450 ADNNLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGL 271
ADN LENIPWHG + W+LK+EV+KL+ LGERE++II+LYYG++NEC TWEDIS++ GL
Sbjct: 421 ADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDISKRIGL 480
Query: 270 SRERVRQVGLVALEKLKHAARKRRLEAMLVKH 175
SRERVRQVGLVALEKLKHAARKR +EAML+KH
Sbjct: 481 SRERVRQVGLVALEKLKHAARKREMEAMLLKH 512
>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 508
Score = 575 bits (1482), Expect = e-161
Identities = 312/508 (61%), Positives = 376/508 (74%), Gaps = 3/508 (0%)
Frame = -1
Query: 1689 MATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFSTN 1510
MATAAVIGLSAGKR+L ++FY SDL +KL +HG + + STK++I+A++ S++ +
Sbjct: 1 MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60
Query: 1509 FPA-NRHTVPIKALKEHVDTVAPPSTNSW-FXXXXXXXXXXXXXXXXXXVFLMLQKSMLE 1336
FP+ NR+T IKALKEHVDT + PST + F L+LQKSMLE
Sbjct: 61 FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120
Query: 1335 KQWKLSFNQMRTVVAPG-EGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHL 1159
KQW LSF + + +P + KK V SG+SA K Q+ + K L
Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
++AVSPELLQ L GYV+G VSE+LL+HAEVV LS+ I + G +P+
Sbjct: 181 KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
D+Q+A+SL++SRAEL+SK I CSLAREKLAMSNVRLVMSIAQ+YDN+GAEMAD
Sbjct: 241 DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDSSKGF+ISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNAKIRL
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
EE+G+TPS+D++AE L IS+KKVRNATEAVSKV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
LEN PWHG ++W+LKDEVNKL+ L ERE++IIRLYYG+DNE TWEDIS++ GLSRER
Sbjct: 421 LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVKH 175
VRQVGLVALEKLKHAARK++LEAMLVKH
Sbjct: 481 VRQVGLVALEKLKHAARKKKLEAMLVKH 508
>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
[Theobroma cacao]
Length = 508
Score = 574 bits (1480), Expect = e-161
Identities = 313/509 (61%), Positives = 375/509 (73%), Gaps = 3/509 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGL+ GKR+L +SF SD+ +KL D+GSS +STKS+I+A++ S+ S
Sbjct: 1 MMATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQ 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPST-NSWFXXXXXXXXXXXXXXXXXXVFLMLQKSML 1339
+ P+ NR IKALKEHVD+ + ST F L+LQKSML
Sbjct: 61 SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120
Query: 1338 EKQWKLSFNQMRTVVAPGEG-NKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKH 1162
EKQW LSF + +P +KK V SG+SA K Q + I K
Sbjct: 121 EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSI-IQPNAKQ 179
Query: 1161 LRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEP 982
LR+ +SPELLQ+ L GYV+G VS++LL+HAEVV LSKKI + G EP
Sbjct: 180 LRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEP 239
Query: 981 TDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXX 802
+D+QLA+SL++SRAELRSKLIECSLAREKLAMSNVRLVMSIAQ+YDN+GAEM+D
Sbjct: 240 SDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299
Query: 801 XXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIR 622
IEKFDSSKG+KISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNAKIR
Sbjct: 300 IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIR 359
Query: 621 LEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADN 442
LEE+GITP++D++AE L +S+KKVRNATEAVSKV SLDR+AFPSLNGLPGET HSYIADN
Sbjct: 360 LEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADN 419
Query: 441 NLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRE 262
++ENIPWHG +EW+LKDEVN+L+ LGERER+IIRLYYG+D E TWEDIS++ GLSRE
Sbjct: 420 HVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKRIGLSRE 479
Query: 261 RVRQVGLVALEKLKHAARKRRLEAMLVKH 175
RVRQVGLVALEKLKHAARK+++EAMLVKH
Sbjct: 480 RVRQVGLVALEKLKHAARKKKMEAMLVKH 508
>ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA [Prunus mume]
Length = 512
Score = 574 bits (1479), Expect = e-161
Identities = 317/513 (61%), Positives = 374/513 (72%), Gaps = 7/513 (1%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDH-GSSQFSAASTKSIIIARRPSHFS 1516
MMATAAVIGLS GKR+L +SFY SD+ +KLF + DH G +STK+++ AR+PS+ S
Sbjct: 1 MMATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCS 60
Query: 1515 TNFPA-NRHTVPIKALKEHVDTVAPPS--TNSWFXXXXXXXXXXXXXXXXXXVFLMLQKS 1345
+ FP+ NR I+ALKEHV T + PS T WF L+LQKS
Sbjct: 61 SRFPSSNRPQQSIRALKEHVHTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKS 120
Query: 1344 MLEKQWKLSFNQMRTVVAPGEG-NKKAEVIRSGISAXXXXXXXXXK--CFKQTARMGIMD 1174
MLEKQW LSF + + + +KK V SG+SA + K T M
Sbjct: 121 MLEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTLNKSTCVMH-PS 179
Query: 1173 KGKHLRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKF 994
K LRA VSPELLQ + GYV+G +SEDLLTH EVV LSKKI +
Sbjct: 180 TNKPLRAIVSPELLQNRVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERL 239
Query: 993 GFEPTDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXX 814
G EP+D+QLA+SLR+SRA+L+SKLIEC LAREKLAMSNVRLVMSIAQ+YDN+GAEMAD
Sbjct: 240 GCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLI 299
Query: 813 XXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRN 634
IEKFDSSKGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRN
Sbjct: 300 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 359
Query: 633 AKIRLEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSY 454
AKIRLEE+GITPS+D++AE L +S+KKVRNATEA+SKV SLDR+AFPSLNGLPGET HSY
Sbjct: 360 AKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSY 419
Query: 453 IADNNLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFG 274
IADN LENIPWHG + W+LK+EV+KL+ LGERER+II+LYYG++NEC TWEDIS++ G
Sbjct: 420 IADNRLENIPWHGVDAWALKEEVSKLINMMLGEREREIIQLYYGLENECLTWEDISKRIG 479
Query: 273 LSRERVRQVGLVALEKLKHAARKRRLEAMLVKH 175
LSRERVRQVGLVALEKLKHAARKR +EAML+KH
Sbjct: 480 LSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512
>ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA [Jatropha curcas]
gi|802585167|ref|XP_012070279.1| PREDICTED: RNA
polymerase sigma factor sigA [Jatropha curcas]
gi|643732469|gb|KDP39565.1| hypothetical protein
JCGZ_02585 [Jatropha curcas]
Length = 508
Score = 573 bits (1477), Expect = e-160
Identities = 311/508 (61%), Positives = 376/508 (74%), Gaps = 3/508 (0%)
Frame = -1
Query: 1689 MATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFSTN 1510
MATAAVIGL AGKR+L ++FY SDL +KLF V DHG + + ++STK++I+A++ S++ ++
Sbjct: 1 MATAAVIGLHAGKRLLSSTFYYSDLTEKLFNVNDHGLTHYQSSSTKNVIVAKKSSNYGSS 60
Query: 1509 FPA-NRHTVPIKALKEHVDTVAPPSTNSW-FXXXXXXXXXXXXXXXXXXVFLMLQKSMLE 1336
F + NR+ IKALKEHVDT + PST + F L+LQKSMLE
Sbjct: 61 FQSSNRNAQSIKALKEHVDTASSPSTAATGFETFVDIEEASSDLDYSVEALLLLQKSMLE 120
Query: 1335 KQWKLSFNQMRTVVAPG-EGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKHL 1159
KQW LSF + + +P + K+ + SG+SA K Q+ + K L
Sbjct: 121 KQWNLSFERTASSDSPSTKSQKQIPITCSGLSARQRRINTRRKNLIQSKSIVQASGFKQL 180
Query: 1158 RAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEPT 979
++AVSPELL L GYV+G VSE+LLTHAEVV LS+ I + G +P+
Sbjct: 181 KSAVSPELLLNRLKGYVKGIVSEELLTHAEVVSLSRIIKAGLSLEEHKSRLKDRLGCDPS 240
Query: 978 DKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXXX 799
D+QLA+SLR+S A+LRSKLI CSLAREKLAMSNVRLVMSIAQ+YDN+GAEMAD
Sbjct: 241 DEQLATSLRISLADLRSKLIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
Query: 798 XXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIRL 619
IEKFDSSKGFKISTYVYWWIRQGVSRAL ENSRTLRLP+HL+ERL IRNAKIRL
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360
Query: 618 EERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADNN 439
EE+G+TPS+D++AE L +S+KKVRNATEA+SKV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 EEKGVTPSIDRIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 420
Query: 438 LENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRER 259
EN PWHG +EW+LKDEVNKL+ L +RER+IIRLYYG+DNE TWEDIS++ GLSRER
Sbjct: 421 PENNPWHGVDEWALKDEVNKLIDLTLQQREREIIRLYYGLDNETLTWEDISKRIGLSRER 480
Query: 258 VRQVGLVALEKLKHAARKRRLEAMLVKH 175
VRQVGLVALEKLKHAARK++LEAMLVKH
Sbjct: 481 VRQVGLVALEKLKHAARKKKLEAMLVKH 508
>ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X2
[Gossypium raimondii] gi|763777227|gb|KJB44350.1|
hypothetical protein B456_007G247500 [Gossypium
raimondii]
Length = 508
Score = 572 bits (1475), Expect = e-160
Identities = 310/509 (60%), Positives = 370/509 (72%), Gaps = 3/509 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGLS GKR+L +SF S+ DKL D+GSS + STK++++A+R S+ S
Sbjct: 1 MMATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLMVAKRSSNCSQ 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPST-NSWFXXXXXXXXXXXXXXXXXXVFLMLQKSML 1339
N P+ NRHT IKA KEHVDT + ST W L+LQKSML
Sbjct: 61 NLPSSNRHTQSIKAFKEHVDTASSISTVEPWIHGTNDLEQESYDLDYSVEALLLLQKSML 120
Query: 1338 EKQWKLSFNQMRTVVAPG-EGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKH 1162
EKQW LSF + +P + + K V SG+SA K Q M I K
Sbjct: 121 EKQWTLSFERTMFTESPSRKTHNKVPVTCSGVSARQRRFSTKRKILSQNKSM-IQPNAKQ 179
Query: 1161 LRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEP 982
LR+ + PELLQ L GYV+G VSEDLL+HAEVV LS+KI + G EP
Sbjct: 180 LRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSRKIKAGLSLEEHRLRLKERLGCEP 239
Query: 981 TDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXX 802
+D+QLA+SL++SRAELRS+ IECSLAREKLAMSNVRLVMSIAQ+YDN+GAEM+D
Sbjct: 240 SDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299
Query: 801 XXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIR 622
IEKFDSSKG+KISTYVYWWIRQGVSRAL ENSRTLRLP++L+ERL IRNAK R
Sbjct: 300 IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKYR 359
Query: 621 LEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADN 442
LEE+GITP++D++AE L +S+KKVRNATEAVSKV SLDR+AFPSLNGLPGET HSYIADN
Sbjct: 360 LEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADN 419
Query: 441 NLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRE 262
++EN PWHG +EW+LKDEVN+L+ LGERER+IIRLY+G+D E TWEDIS++ GLSRE
Sbjct: 420 HVENNPWHGVDEWALKDEVNRLINITLGEREREIIRLYHGLDKESLTWEDISKRIGLSRE 479
Query: 261 RVRQVGLVALEKLKHAARKRRLEAMLVKH 175
RVRQVGLVALEKLKHAARK+++EAMLVKH
Sbjct: 480 RVRQVGLVALEKLKHAARKKKMEAMLVKH 508
>ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
gi|743936142|ref|XP_011012458.1| PREDICTED: RNA
polymerase sigma factor sigA [Populus euphratica]
Length = 509
Score = 572 bits (1475), Expect = e-160
Identities = 306/509 (60%), Positives = 372/509 (73%), Gaps = 3/509 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGLS GKR+L +SFY SDL +KL V DHG + A+TK++++A++ S++
Sbjct: 1 MMATAAVIGLSTGKRLLSSSFYYSDLTEKLSSVNDHGITYCPTATTKNVVVAKKSSNYGP 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPST-NSWFXXXXXXXXXXXXXXXXXXVFLMLQKSML 1339
NFP+ NR++ IKALKEHVDT + S +WF L+LQKSML
Sbjct: 61 NFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120
Query: 1338 EKQWKLSFNQMRTVVAPGE-GNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKH 1162
EKQW LSF + + + + NKK V SG+SA K Q+ M K
Sbjct: 121 EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180
Query: 1161 LRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEP 982
LR+ +SP+LLQ L GYV+G VS+++L H EVV LS+ I + G EP
Sbjct: 181 LRSVISPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240
Query: 981 TDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXX 802
+D+Q+A SLR+SRA+L++KLI+CSLAREKLAMSNVRLVMSIAQKYDN+GAEMAD
Sbjct: 241 SDEQIADSLRISRADLQAKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300
Query: 801 XXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIR 622
IEKFDSSKGFKISTYVYWWIRQGVSRAL +NSRTLRLP+HL+ERL IRNAKIR
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360
Query: 621 LEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADN 442
LEE+G+TPS+D++AE L +S++KVRNATEA+SKV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
Query: 441 NLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRE 262
EN PWHG +EW+LK+EVNKL+ + L ERE++IIRLY+G+D EC TWEDIS++ GLSRE
Sbjct: 421 RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480
Query: 261 RVRQVGLVALEKLKHAARKRRLEAMLVKH 175
RVRQVGLVALEKLKHAARKR EAMLVKH
Sbjct: 481 RVRQVGLVALEKLKHAARKRNTEAMLVKH 509
>gb|KHG03684.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
gi|728838604|gb|KHG18047.1| RNA polymerase sigma factor
rpoD [Gossypium arboreum]
Length = 508
Score = 572 bits (1475), Expect = e-160
Identities = 311/509 (61%), Positives = 370/509 (72%), Gaps = 3/509 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGLS GKR+L +SF S+ DKL D+GSS + STK++I+A+R S+ S
Sbjct: 1 MMATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLIVAKRSSNCSQ 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPST-NSWFXXXXXXXXXXXXXXXXXXVFLMLQKSML 1339
N P+ NRHT IKA K HVDT + ST W L+LQKSML
Sbjct: 61 NLPSSNRHTQLIKAFKGHVDTASSISTVEPWIHGANDLEQESYDLDCSVEALLLLQKSML 120
Query: 1338 EKQWKLSFNQMRTVVAPG-EGNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKH 1162
EKQW LSF + + +P + + K V SG+SA K Q M I K
Sbjct: 121 EKQWTLSFERTMFIESPSRKTHSKVPVTCSGVSARQRRFNTKRKILSQNKSM-IQPNAKQ 179
Query: 1161 LRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEP 982
LR+ + PELLQ L GYV+G VSEDLL+HAEVV LSKKI + G EP
Sbjct: 180 LRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSKKIKAGLSLEEHILRLKERLGCEP 239
Query: 981 TDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXX 802
+D+QLA+SL++SRAELRS+ IECSLAREKLAMSNVRLVMSIAQ+YDN+GAEM+D
Sbjct: 240 SDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299
Query: 801 XXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIR 622
IEKFDSSKG+KISTYVYWWIRQGVSRAL ENSRTLRLP++L+ERL IRNAK R
Sbjct: 300 IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKYR 359
Query: 621 LEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADN 442
LEE+GITP++D++AE L +S+KKVRNATEAVSKV SLDR+AFPSLNGLPGET HSYIADN
Sbjct: 360 LEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADN 419
Query: 441 NLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRE 262
++EN PWHG +EW+LKDEVN+L+ LGERER+IIRLY+G+D E TWEDIS++ GLSRE
Sbjct: 420 HVENNPWHGVDEWALKDEVNRLIDITLGEREREIIRLYHGLDKESLTWEDISKRIGLSRE 479
Query: 261 RVRQVGLVALEKLKHAARKRRLEAMLVKH 175
RVRQVGLVALEKLKHAARK+++EAMLVKH
Sbjct: 480 RVRQVGLVALEKLKHAARKKKMEAMLVKH 508
>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
1 family protein [Populus trichocarpa]
Length = 509
Score = 572 bits (1474), Expect = e-160
Identities = 307/509 (60%), Positives = 373/509 (73%), Gaps = 3/509 (0%)
Frame = -1
Query: 1692 MMATAAVIGLSAGKRILGTSFYSSDLADKLFPVMDHGSSQFSAASTKSIIIARRPSHFST 1513
MMATAAVIGLS+GKR+L +SFY SDL +KL V DHG + + A+TK++I+A++ S++
Sbjct: 1 MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60
Query: 1512 NFPA-NRHTVPIKALKEHVDTVAPPST-NSWFXXXXXXXXXXXXXXXXXXVFLMLQKSML 1339
+FP+ NR++ IKALKEHVDT + S +WF L+LQKSML
Sbjct: 61 SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120
Query: 1338 EKQWKLSFNQMRTVVAPGE-GNKKAEVIRSGISAXXXXXXXXXKCFKQTARMGIMDKGKH 1162
EKQW LSF + + + + NKK V SG+SA K Q+ M K
Sbjct: 121 EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180
Query: 1161 LRAAVSPELLQTSLTGYVRGTVSEDLLTHAEVVHLSKKIXXXXXXXXXXXXXXXKFGFEP 982
LR+ SP+LLQ L GYV+G VS+++L H EVV LS+ I + G EP
Sbjct: 181 LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240
Query: 981 TDKQLASSLRMSRAELRSKLIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADXXXXXX 802
+D+Q+A SLR+SRA+L+SKLI+CSLAREKLAMSNVRLVMSIAQKYDN+GAEMAD
Sbjct: 241 SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300
Query: 801 XXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPSHLYERLCSIRNAKIR 622
IEKFDSSKGFKISTYVYWWIRQGVSRAL +NSRTLRLP+HL+ERL IRNAKIR
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360
Query: 621 LEERGITPSVDKLAECLKISEKKVRNATEAVSKVLSLDREAFPSLNGLPGETLHSYIADN 442
LEE+G+TPS+D++AE L +S++KVRNATEA+SKV SLDREAFPSLNGLPGET HSYIADN
Sbjct: 361 LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
Query: 441 NLENIPWHGFEEWSLKDEVNKLLCAALGERERDIIRLYYGIDNECHTWEDISRQFGLSRE 262
EN PWHG +EW+LK+EVNKL+ + L ERE++IIRLY+G+D EC TWEDIS++ GLSRE
Sbjct: 421 RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480
Query: 261 RVRQVGLVALEKLKHAARKRRLEAMLVKH 175
RVRQVGLVALEKLKHAARKR EAMLVKH
Sbjct: 481 RVRQVGLVALEKLKHAARKRNTEAMLVKH 509