BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00002209
         (4840 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010907843.1| PREDICTED: DNA-directed RNA polymerase III s...  2068   0.0  
ref|XP_009402242.1| PREDICTED: DNA-directed RNA polymerase III s...  2030   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...  1934   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...  1931   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...  1898   0.0  
ref|XP_008669237.1| PREDICTED: DNA-directed RNA polymerase III s...  1884   0.0  
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...  1883   0.0  
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...  1880   0.0  
emb|CDM82865.1| unnamed protein product [Triticum aestivum]          1873   0.0  
ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III s...  1858   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1764   0.0  
ref|XP_010236212.1| PREDICTED: DNA-directed RNA polymerase III s...  1753   0.0  
ref|XP_006828249.1| PREDICTED: DNA-directed RNA polymerase III s...  1737   0.0  
ref|XP_011627269.1| PREDICTED: DNA-directed RNA polymerase III s...  1716   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...  1707   0.0  
ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III s...  1700   0.0  
ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III s...  1692   0.0  
ref|XP_011005565.1| PREDICTED: DNA-directed RNA polymerase III s...  1682   0.0  
ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1679   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1679   0.0  

>ref|XP_010907843.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Elaeis
            guineensis]
          Length = 1369

 Score = 2068 bits (5357), Expect = 0.0
 Identities = 1027/1368 (75%), Positives = 1177/1368 (86%), Gaps = 2/1368 (0%)
 Frame = -3

Query: 4643 EKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLD 4464
            EKLRCTKEPYIE+ GPR+IKSIRF  FSGEEI+K AEVQ+WN  +YD + +K +E+GLLD
Sbjct: 3    EKLRCTKEPYIEDVGPRKIKSIRFSTFSGEEIRKLAEVQVWNNRIYDLN-LKPIENGLLD 61

Query: 4463 PRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILF 4284
            PR+G  N++T CATCHG+FTDCPGHFGYL+L LPVFNVGYFNSILNILKCICK CGRIL 
Sbjct: 62   PRMGAPNRQTECATCHGNFTDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKGCGRILL 121

Query: 4283 SDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQLAIVES 4104
             +   K +L K RNPK+D+ QKN +MK VR+KCKPSRC+RCG+ NG V K +S L  ++ 
Sbjct: 122  DETLRKSYLKKMRNPKADIFQKNALMKMVRDKCKPSRCLRCGYANGVVKKARSGLYFIQD 181

Query: 4103 FNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCVRPESL 3924
            F+KT D S+EE  +ALSH K+K   Q  H+L+   VLSLF+KM DEDCELLNL  RPE L
Sbjct: 182  FSKTADPSVEEFRSALSHTKDKTSFQVSHVLSAVAVLSLFRKMLDEDCELLNLYDRPEKL 241

Query: 3923 IVTDIAIPPAPIRPSVFVGSGQS-NENGLTVILKNIINTNSHLREALQGALPLYNCLERW 3747
            IVT IA+PP  IRPSV V SG+S NE+ +T ILKNIINTNS LRE L+GA P + CL+ W
Sbjct: 242  IVTHIAVPPVSIRPSVIVDSGRSSNEDNITSILKNIINTNSILREDLEGAAPPFKCLDCW 301

Query: 3746 NLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVISPDPNL 3567
              LQ  VVEYINSEAP + D+K++GLVQRLKGKQGRFR NLSGKRVE+TGRTVISPDPNL
Sbjct: 302  THLQIQVVEYINSEAPCIPDSKHRGLVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNL 361

Query: 3566 KITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVHLKYVE 3387
            KITEVA+P+LMA+VLTYPERV+++NIEKLRQ VRNGP K+PGANFV   D ++VHL+YV+
Sbjct: 362  KITEVAIPILMARVLTYPERVSNYNIEKLRQLVRNGPSKYPGANFVLRPDGSKVHLRYVD 421

Query: 3386 KKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 3207
            K+++ANELKYG VVERHLEDGDIVLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPY
Sbjct: 422  KRDIANELKYGYVVERHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 481

Query: 3206 NADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 3027
            NADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD
Sbjct: 482  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 541

Query: 3026 TFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVFVNLIV 2847
            TFYDRAAFSLMCSY+GD M+ IDLPTPA++KP+ELWTGKQLF+V++RPNA TRVF+NLIV
Sbjct: 542  TFYDRAAFSLMCSYMGDAMDPIDLPTPAIIKPIELWTGKQLFNVLIRPNANTRVFLNLIV 601

Query: 2846 KERIHVKDTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSVLLRDYNSDVAASC 2667
            KE+I+ K +ETMCP DG VYFRNS+LICGQLGK TLGNGNK+GLF+VLLRDYN   AASC
Sbjct: 602  KEKIYSK-SETMCPNDGCVYFRNSELICGQLGKATLGNGNKDGLFAVLLRDYNPHAAASC 660

Query: 2666 MNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCISYIELYENRKLNLR 2487
            MNRLAKLSARWIGNHGFSIGIDDVQPGE LNQQK+  I++GYR C  +I  Y   +L L+
Sbjct: 661  MNRLAKLSARWIGNHGFSIGIDDVQPGENLNQQKRKKINEGYRECHGHISSYSKGELILQ 720

Query: 2486 PGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGSAINISQMIACV 2307
            PG +AA+TLE++IT VLN+IR TAG+VCM ELHWRNSPLIMSQCGSKGS INISQM+ACV
Sbjct: 721  PGCNAAQTLELKITGVLNQIRATAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACV 780

Query: 2306 GQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLV 2127
            GQQSVGGRRAPNGFIDRTLPHFP+ SKTPAAKGFVANSFYTGLT TEFFFHTMGGREGLV
Sbjct: 781  GQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTPTEFFFHTMGGREGLV 840

Query: 2126 DTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFIYGDDGMDPAKMEGENGIP 1947
            DTAVKTAETGYMSRRLMK LEDLS+YYDQTVR+A+G++VQF+YGDDGMDPAKMEG++GIP
Sbjct: 841  DTAVKTAETGYMSRRLMKGLEDLSIYYDQTVRTASGSIVQFVYGDDGMDPAKMEGKDGIP 900

Query: 1946 LNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSPEGGCSSAFKNLLSDFLHK 1767
            LNLDQL+ K++ATCP + QD+LSP+ I+ ++++RLSK+DM+PEGGCS++FK +LSDFLHK
Sbjct: 901  LNLDQLFMKIMATCPLREQDTLSPAEILHIMDDRLSKYDMTPEGGCSASFKKMLSDFLHK 960

Query: 1766 RVAELRKTKTRLQLEEAD-QKDYSSKMGIVAANISGISAKQLQVFMETCISRYHKKKXXX 1590
            RVA L   +  LQL+E   QK   S +  VAANISGISAKQLQVF+ETCISRYH KK   
Sbjct: 961  RVAALCNIRRALQLDENHLQKQDYSVLESVAANISGISAKQLQVFLETCISRYHLKKIEA 1020

Query: 1589 XXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITATL 1410
                         EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITATL
Sbjct: 1021 GGAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITATL 1080

Query: 1409 FCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITLDKERIKALQMEASFDSI 1230
              D    SAR+V+  ++KTVLGEVA+A+KIVLKSSQPYI + LD ERI+AL M  S  S+
Sbjct: 1081 VSDRDVLSARMVRSSLQKTVLGEVAKAIKIVLKSSQPYIVVKLDMERIEALHMRISSQSV 1140

Query: 1229 RHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHTLKCMLPKVLVKGISTVE 1050
            + +ILN  K KLKPEH+ V     L++ PP ADR+++QFELH+LK +LPKV+VKGI+TVE
Sbjct: 1141 QQAILNHPKTKLKPEHIRVLGNNKLKIYPPEADRSKLQFELHSLKAVLPKVIVKGIATVE 1200

Query: 1049 RAVINCQKGKYNLLVEGTNLLAVMGTPGVDASKTKSNHVMEIWQTLGIEAARLSIITEIQ 870
            RAVIN   G YNLLVEGTNLLAVMGTPG+D SKTKSNH++E+ QT+GIEAAR  II EIQ
Sbjct: 1201 RAVINHANGVYNLLVEGTNLLAVMGTPGIDGSKTKSNHIIEVQQTIGIEAARQCIINEIQ 1260

Query: 869  DTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKMKDSVLMLASFEKTAEHLFNAS 690
             TMR+HGMSID RHMMLLAD+MTY+GEVLGITRFG++KMKDSVLMLASFEKTAEHLFNAS
Sbjct: 1261 YTMRNHGMSIDARHMMLLADLMTYRGEVLGITRFGISKMKDSVLMLASFEKTAEHLFNAS 1320

Query: 689  FNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQLPELKYGPDPII 546
            ++GR+DQI+GVSECIIMGIPMQLGTGILKVRQRVEQLPELKY PDPII
Sbjct: 1321 YSGRNDQIEGVSECIIMGIPMQLGTGILKVRQRVEQLPELKYRPDPII 1368


>ref|XP_009402242.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Musa
            acuminata subsp. malaccensis]
          Length = 1372

 Score = 2030 bits (5259), Expect = 0.0
 Identities = 1014/1369 (74%), Positives = 1164/1369 (85%), Gaps = 3/1369 (0%)
 Frame = -3

Query: 4643 EKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLD 4464
            EKLRCTKEPYIE+ GP+RIKSIRF  FSGEEIKK AEVQ+WN  +Y    ++ VE+GLLD
Sbjct: 6    EKLRCTKEPYIEDVGPQRIKSIRFSTFSGEEIKKLAEVQVWNNRIYGID-LRPVENGLLD 64

Query: 4463 PRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILF 4284
            P++G ANK   CATCHG+FT+CPGHFGYL+L LPVFNVG+FNSILN+LKCICKAC RIL 
Sbjct: 65   PKMGAANKAGVCATCHGNFTECPGHFGYLKLTLPVFNVGFFNSILNVLKCICKACARILL 124

Query: 4283 SDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQLAIVES 4104
             + + + FL K RNPK+D+  KN +MKK+R+KCK S C  CG  NG V K +S  AI   
Sbjct: 125  LENDRRIFLKKMRNPKADIFMKNALMKKIRDKCKISICPWCGSRNGVVKKARSSFAIAHD 184

Query: 4103 FNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCVRPESL 3924
            F+++VD S+E   AALSH+K K   Q  H+L+P  VLSLFK+M DEDCELLNL  RP+ L
Sbjct: 185  FSRSVDESIEVVRAALSHIKAKSSFQIVHVLSPVTVLSLFKRMVDEDCELLNLYDRPDKL 244

Query: 3923 IVTDIAIPPAPIRPSVFVGSGQS-NENGLTVILKNIINTNSHLREALQGALPLYNCLERW 3747
            IVT IA+PP  +RPSVFV  G+S NE+ +T ILKNIINTNS LRE L+GA P + CL+ W
Sbjct: 245  IVTTIAVPPVAVRPSVFVDFGKSSNEDSITTILKNIINTNSILREDLEGAAPPFKCLDCW 304

Query: 3746 NLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVISPDPNL 3567
              LQ  VVEYINSEAPSV D+K++GL+QRLKGKQGRFR NLSGKRVE+TGRTVISPDPNL
Sbjct: 305  AHLQIQVVEYINSEAPSVPDSKHRGLIQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNL 364

Query: 3566 KITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVHLKYVE 3387
            KITEVA+PVLMA+ LTYPERV+ +NIEKLRQ + NGP K+PGANF+ L D T+ HL+YV+
Sbjct: 365  KITEVAIPVLMAKKLTYPERVSAYNIEKLRQRICNGPDKYPGANFILLGDGTKQHLRYVD 424

Query: 3386 KKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 3207
            KK  A+ELKYG +VERHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPY
Sbjct: 425  KKTAASELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 484

Query: 3206 NADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 3027
            NADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD
Sbjct: 485  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 544

Query: 3026 TFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVFVNLIV 2847
            TFYDRAAFSLMCSY+GD M+ IDLP+PA++KP+ELWTGKQLFSV++RPNA+T+VF+NL+V
Sbjct: 545  TFYDRAAFSLMCSYMGDSMDPIDLPSPAIIKPIELWTGKQLFSVLIRPNARTKVFLNLMV 604

Query: 2846 KERIHVKDTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSVLLRDYNSDVAASC 2667
            KE+I+ K +ETMCP DGYVYFRNS+LICGQLGKVTLGNGNK+GLFSVLLRDYNS  AASC
Sbjct: 605  KEKIYTK-SETMCPSDGYVYFRNSELICGQLGKVTLGNGNKDGLFSVLLRDYNSHAAASC 663

Query: 2666 MNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCISYIELYENRKLNLR 2487
            MNRLAKLSARWIGNHGFSIGIDDVQPGE LNQQKK  ID+GYR C   I LY   KL L+
Sbjct: 664  MNRLAKLSARWIGNHGFSIGIDDVQPGEHLNQQKKKKIDEGYRECHELISLYGKGKLTLQ 723

Query: 2486 PGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGSAINISQMIACV 2307
            PG +AA+TLE++IT VLN+IR  AG+VCM ELHWRNSPLIMSQCGSKGS INISQM++CV
Sbjct: 724  PGCNAAQTLELKITGVLNQIRAIAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVSCV 783

Query: 2306 GQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLV 2127
            GQQSVGGRRAPNGFIDRTLPHFP+ SKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLV
Sbjct: 784  GQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLV 843

Query: 2126 DTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFIYGDDGMDPAKMEGENGIP 1947
            DTAVKTAETGYMSRRLMK LEDLS+YYD+TVR+A+G +VQF+YGDDGMDPAKMEG++GIP
Sbjct: 844  DTAVKTAETGYMSRRLMKGLEDLSIYYDETVRNASGGIVQFLYGDDGMDPAKMEGKDGIP 903

Query: 1946 LNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSPEGGCSSAFKNLLSDFLHK 1767
            LN+DQL+ KV+ATCP +  D LSP+  + ++++RL+K+DMSPEGGCS+AFK LLSDF+HK
Sbjct: 904  LNMDQLFMKVMATCPPREHDMLSPTEALRIMDDRLAKYDMSPEGGCSAAFKKLLSDFVHK 963

Query: 1766 RVAELRKTKTRLQLEEAD--QKDYSSKMGIVAANISGISAKQLQVFMETCISRYHKKKXX 1593
            RV+ L   +  L+L+E D  +KD S+ +  VAA ISGIS+KQL+VF+ETCISRYH KK  
Sbjct: 964  RVSALANMRKSLKLDETDMGRKD-STVLENVAAKISGISSKQLEVFLETCISRYHSKKVE 1022

Query: 1592 XXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAT 1413
                          EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA+KNISTPI+TAT
Sbjct: 1023 AGAAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKNISTPIVTAT 1082

Query: 1412 LFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITLDKERIKALQMEASFDS 1233
            L       SAR+VK  IEKTVLGEVA+A+KIVLKSS+PYI + LD + I+AL M  S +S
Sbjct: 1083 LLNGRDVLSARVVKSCIEKTVLGEVAKALKIVLKSSRPYIVVKLDMDLIEALHMRVSAES 1142

Query: 1232 IRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHTLKCMLPKVLVKGISTV 1053
            + HSILN  K+KLK EH+       L++ PP ADR ++QFE+H+LK MLPKV+VKGI TV
Sbjct: 1143 VCHSILNHPKIKLKSEHINNIGSDKLKIYPPEADRRKLQFEMHSLKAMLPKVIVKGIPTV 1202

Query: 1052 ERAVINCQKGKYNLLVEGTNLLAVMGTPGVDASKTKSNHVMEIWQTLGIEAARLSIITEI 873
            ERAVIN   G YNLLVEGTNLLAVMGTPG+DASKT+SNHV+E+ +TLGIEAAR  II EI
Sbjct: 1203 ERAVINETNGVYNLLVEGTNLLAVMGTPGIDASKTRSNHVIEVQRTLGIEAARQCIINEI 1262

Query: 872  QDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKMKDSVLMLASFEKTAEHLFNA 693
            Q TMR HGMSIDTRHMMLLAD+MTYKGEVLGITRFG++KMK+SVLMLASFEKTAEHLFNA
Sbjct: 1263 QYTMRGHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTAEHLFNA 1322

Query: 692  SFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQLPELKYGPDPII 546
            S+ GRDDQI+GVSECIIMGIPMQLGTGILKVRQRVE+LPELKY PDPII
Sbjct: 1323 SYGGRDDQIEGVSECIIMGIPMQLGTGILKVRQRVEKLPELKYAPDPII 1371


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1934 bits (5009), Expect = 0.0
 Identities = 972/1384 (70%), Positives = 1136/1384 (82%), Gaps = 13/1384 (0%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            MA+  EKLRCTKEP+IE+ G RRIKSIRF  FSG E+++SAEVQ+WN  +Y+   +K V 
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYN-HEMKPVP 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
            +GLLD R+G ANK   C+TCHGSF +CPGHFGYL+L LPVFNVG+FN IL++LKCICK+C
Sbjct: 60   NGLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQL 4119
             R+L  +K+  EFL K RNPK+D  QK+ IMKKVR+KCK SRC  CG  NG   K ++ L
Sbjct: 120  SRVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGL 179

Query: 4118 AIVESFNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCV 3939
             I+   +KT+D S EE   ALSH KEK+ +    +L P  VLSLFK+M DEDCELLNL  
Sbjct: 180  IILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 239

Query: 3938 RPESLIVTDIAIPPAPIRPSVFVGSGQ-SNENGLTVILKNIINTNSHLREALQGALPLYN 3762
            RPE LIVT+IA+PP PIRPSVFV  G+ SNE+ +TVILK+I NTNS L+E LQ       
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 3761 CLERWNLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVIS 3582
            C + W  LQ  VVEYINS+APS+ +++++GLVQRLKGK GRFR NLSGKR EYTGRTVIS
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVIS 359

Query: 3581 PDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVH 3402
            PDPNL+ITEVA+P+LMA+VLTYPERV+++NIEKLRQC+RNGP KHPGANF+   D T++H
Sbjct: 360  PDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKLH 419

Query: 3401 LKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 3222
            LKY +++  A +LKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES
Sbjct: 420  LKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 479

Query: 3221 VCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 3042
            VCNPYNADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 480  VCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL 539

Query: 3041 ITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVF 2862
            +TRKD FYDR++FSL+CSY+GD ME+IDLPTPAL+KP+ELWTGKQLFSV+VRPNA T+VF
Sbjct: 540  VTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKVF 599

Query: 2861 VNLIVKERIH------VKDTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSVLL 2700
            +NL VKE+I+        + E MCP DG+VYFRNS+L+ GQ+GK TLGNGNK+G+FS L+
Sbjct: 600  LNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLV 659

Query: 2699 RDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCISYI 2520
            RDYNS  AASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LNQ+KKM ID GY+ C   I
Sbjct: 660  RDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDLI 719

Query: 2519 ELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGS 2340
              Y    L L+PG +AA+TLE  IT VLNEIR+ AG VCM  LHWRNSPLIMSQCGSKGS
Sbjct: 720  ASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKGS 779

Query: 2339 AINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLTATEFF 2160
             INISQM+ACVGQQSVGGRRAPNGFIDRTLPHFP+ SKTPAAKGFVANSFYTGLTATEFF
Sbjct: 780  PINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFF 839

Query: 2159 FHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFIYGDDGMD 1980
            FHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS++YDQTVR+A+G +VQF+YGDDGMD
Sbjct: 840  FHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMD 899

Query: 1979 PAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSPEGGCSSA 1800
            PAKMEG++G PLNLDQL+ KV+ATCP++ Q++LSP  I+ ++N++LS+HD S + GCS  
Sbjct: 900  PAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEK 959

Query: 1799 FKNLLSDFLHKRVAELRKTKTRLQLEEADQKD-YSSKMGIVAANISGISAKQLQVFMETC 1623
            FK LL+ FL  R+  L+ T+  L L+E    + +SS    +AANISGIS KQLQVF++TC
Sbjct: 960  FKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTC 1019

Query: 1622 ISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1443
            +SRYH KK                EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK
Sbjct: 1020 LSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1079

Query: 1442 NISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITLDKERIK 1263
             ISTPIITA L  +    SARIVKG +EK VLGEVAEA+KIVLKSSQP + + LD +RI+
Sbjct: 1080 KISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIE 1139

Query: 1262 ALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHTLKCMLP 1083
            AL M  S DS++ SILN  K+KLK EHV V  K  LR+ P   D++++ +ELH LK MLP
Sbjct: 1140 ALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLP 1199

Query: 1082 KVLVKGISTVERAVINCQKG-----KYNLLVEGTNLLAVMGTPGVDASKTKSNHVMEIWQ 918
            KV+VKGI TVERAVI+ + G     +Y LLVEGTNLLAVMGTPGVDA KTKSNH+ME+ +
Sbjct: 1200 KVIVKGIPTVERAVIS-ETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNR 1258

Query: 917  TLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKMKDSVL 738
            TLGIEAAR SII EIQ TM+SHGM+ID+RHMMLLAD+MTYKGE+LGITR+G+ KMK SVL
Sbjct: 1259 TLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVL 1318

Query: 737  MLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQLPELKYGP 558
            MLASFEKTAEHLFNAS++GR+DQI+GVSECIIMGIPMQLGTGILKVRQR++ LPE KY P
Sbjct: 1319 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQP 1378

Query: 557  DPII 546
            DPI+
Sbjct: 1379 DPIL 1382


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score = 1931 bits (5002), Expect = 0.0
 Identities = 965/1389 (69%), Positives = 1130/1389 (81%), Gaps = 18/1389 (1%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            MA+  EKLRCTKEP+IE+ G RRIKSIRF  FSG E+++SAEVQ+WN  +Y+   ++ V 
Sbjct: 1    MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYN-QEMRPVP 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
            +GLLD R+G ANK   C+TCHGSF +CPGHFGYL+L LPVFNVG+FN IL++LKCICK C
Sbjct: 60   NGLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQL 4119
             R+L  +K+  EFL K RNPK+D  QK+ IMKKVR+KCK SRC  CG  NG   K ++ L
Sbjct: 120  SRVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGL 179

Query: 4118 AIVESFNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCV 3939
             I+   +KT+D S EE   ALSH KEK+     H+L P  VLSLFK+M DEDCELLNL  
Sbjct: 180  IILHDCSKTLDGSTEELKEALSHKKEKLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGD 239

Query: 3938 RPESLIVTDIAIPPAPIRPSVFVGSGQ-SNENGLTVILKNIINTNSHLREALQGALPLYN 3762
            RPE LIVT+IA+PP PIRPSVFV  G+ SNE+ +TVILK+I NTNS L+E LQ       
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 3761 CLERWNLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVIS 3582
            C + W  LQ  VVEYINS+APS+ +++++GLVQRLKGK GRFR NLSGKR EYTGRTVIS
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVIS 359

Query: 3581 PDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVH 3402
            PDPNL+ITEVA+P+LMA+VLTYPERV+++NIEKLRQC+RNGP KHPGANF+   D T++H
Sbjct: 360  PDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQTDGTKLH 419

Query: 3401 LKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 3222
            LKY +++  A +LKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES
Sbjct: 420  LKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 479

Query: 3221 VCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 3042
            VCNPYNADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 480  VCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL 539

Query: 3041 ITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVF 2862
            +TRKD FYDR++F+L+CSY+GD ME+IDLPTPAL+KP+ELWTGKQLFSV+VRPNA T+VF
Sbjct: 540  VTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFSVLVRPNACTKVF 599

Query: 2861 VNLIVKERIHVKDTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSVLLRDYNSD 2682
            +NL VKE+I+ K  ETMCP DG+VYFRNS+L+ GQ+GK TLGNGNK+G+FS+L+RDYNS 
Sbjct: 600  LNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDGMFSILVRDYNSH 659

Query: 2681 VAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCISYIELYENR 2502
             AASCMNRLAK SAR+IGNHGFSIG+DDV+PGE L+QQKK  ID+GY+ C   I  +   
Sbjct: 660  AAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYKECHDLITSFSKG 719

Query: 2501 KLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGSAINISQ 2322
             L L+PG +AA+TLE +IT VLN+IR+ AG++CM  LHWRNSPLIMSQCGSKGS INISQ
Sbjct: 720  ALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQCGSKGSPINISQ 779

Query: 2321 MIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLT----------- 2175
            M+ CVGQQSVGG RAPNGFIDRTLPHFP+ SKTPAAKGFVANSFY GLT           
Sbjct: 780  MVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEFFFHTMGG 839

Query: 2174 ------ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAV 2013
                  ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS++YDQTVR+A+G +
Sbjct: 840  IYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGI 899

Query: 2012 VQFIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKH 1833
            VQF+YGDDGMDPAKMEGE+G PLNLDQL+ KV+ATCP++ Q++LSP  I+ ++N++LS+H
Sbjct: 900  VQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEH 959

Query: 1832 DMSPEGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEEADQKDYSSKMGIVAANISGISA 1653
            D S + GCS  FK LL DFL  R+  L+ T+  L L+E      SS    +AANISGISA
Sbjct: 960  DASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALCLDENHVGKDSSIEESIAANISGISA 1019

Query: 1652 KQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1473
            KQLQVF++TC+SRYH KK                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1020 KQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1079

Query: 1472 RIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYI 1293
            RIKEIINAAK ISTPIITA L       SAR+VKG +EK VLGEVAE +KIVLKSSQP +
Sbjct: 1080 RIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQPNL 1139

Query: 1292 SITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQF 1113
             + LD +RI+ L M  S DS++ SILN  ++KLK EHV V  K  LRV P   D++++ +
Sbjct: 1140 VVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKLLY 1199

Query: 1112 ELHTLKCMLPKVLVKGISTVERAVINCQKGKYNLLVEGTNLLAVMGTPGVDASKTKSNHV 933
            ELH LK MLPKV+VKGI TVERAVI+    KY+LLVEGTNLLAVMGTPGVDA KTKSNH+
Sbjct: 1200 ELHNLKSMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAVMGTPGVDAMKTKSNHI 1259

Query: 932  MEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKM 753
            ME+ +TLGIEAAR SII EIQ TM SHGM+ID+RHMMLLAD+MTYKGE+LGITR+G+ KM
Sbjct: 1260 MEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKM 1319

Query: 752  KDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQLPE 573
            K SVLMLASFEKTAEHLFNAS++GR+DQI+GVSECIIMGIPMQLGTGILKVRQR++ LPE
Sbjct: 1320 KSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPE 1379

Query: 572  LKYGPDPII 546
             KY PDPI+
Sbjct: 1380 FKYQPDPIL 1388


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 1898 bits (4917), Expect = 0.0
 Identities = 957/1392 (68%), Positives = 1124/1392 (80%), Gaps = 21/1392 (1%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            MA+  EKLRCTKEP+IE+ G RRIKSIRF   SG EI+KSAEVQ+WN  +Y    +K V 
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIY-GHDMKPVP 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
            +GLLDPR+G  NK+  C+TCHG F+DCPGHFGYL+L LPVFNVG+FN IL++LKCICK+C
Sbjct: 60   NGLLDPRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQL 4119
             R+L  +K+ +EFL K RNP++D  QK+  MKKVR+KCK S C RC + NG V K ++ L
Sbjct: 120  SRVLLFEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGL 179

Query: 4118 AIVESFNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCV 3939
             +V   +K +D   EE   AL + KEKV      +L P  VLSLF++M DEDCELLNL  
Sbjct: 180  IVVHDCSKVLDGHTEELKNALQNKKEKVSANSVRVLDPATVLSLFRRMTDEDCELLNLGD 239

Query: 3938 RPESLIVTDIAIPPAPIRPSVFVGSGQ-SNENGLTVILKNIINTNSHLREALQGALPLYN 3762
            RPE LIV++IA+PP PIRPSV VGS + SNE+ +TVILK+I+NTNS L+E L    P   
Sbjct: 240  RPEKLIVSEIAVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTK 299

Query: 3761 CLERWNLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVIS 3582
            C + W  LQ  VVEY+NS+AP + D++++GLVQRLKGK GRFR NLSGKR EYTGRTVIS
Sbjct: 300  CFDCWQYLQLQVVEYVNSDAPCLPDSQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVIS 359

Query: 3581 PDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVH 3402
            PDPNLKITEVA+PVLMA+VLTYPERV+++NIEKLRQC+RNGPFK+PGANFVT  D  +  
Sbjct: 360  PDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQS 419

Query: 3401 LKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 3222
            LKY +++  A +LK GC+VERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFNES
Sbjct: 420  LKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 479

Query: 3221 VCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 3042
            VCNPYNADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 480  VCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL 539

Query: 3041 ITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVF 2862
            +TRKDTFYDR++F+L+CSY+GD ME+IDLPTPAL+KP+ELWTGKQLFSV+VRPNA TRVF
Sbjct: 540  VTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAHTRVF 599

Query: 2861 VNLIVKERIHVKDT-------------ETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKN 2721
            +NL V+E+I+ K               ETMCP DGYVYFRNS+L+ GQ+GK TLGNGNK+
Sbjct: 600  LNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNKD 659

Query: 2720 GLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGY 2541
            GL+SVLLRDYNS  AASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN+QKK  ID GY
Sbjct: 660  GLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEIDGGY 719

Query: 2540 RRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMS 2361
            ++C   I L+    L L PG +AA+TLE  IT VLNEIR  AG+VCM  LHWRNSPLIMS
Sbjct: 720  KKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIMS 779

Query: 2360 QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTG 2181
            QCGSKGS INISQM+ACVGQQSVGGRRAP+GF++RTLPHFP+ SKTPAAKGFVANSFYTG
Sbjct: 780  QCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYTG 839

Query: 2180 LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFI 2001
            LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS++YDQTVR+A+G +VQF+
Sbjct: 840  LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFL 899

Query: 2000 YGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSP 1821
            YGDDGMDPAKMEG++G+PLNLDQL+ KV+ATCP++  D+LSP  I  ++ ++L +HD S 
Sbjct: 900  YGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQMLEDKLLQHDTSS 959

Query: 1820 EGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEE--ADQKDYSSKMGIVAANISGISAKQ 1647
            +GGCS  FK  L++FL KR+  ++ T+  L L E   ++KD S     VAA ISGISAKQ
Sbjct: 960  DGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKD-SCVEESVAAIISGISAKQ 1018

Query: 1646 LQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRI 1467
            LQVF++TC+SRY  KK                EPGTQMTLKTFHFAGVASMNVTLGVPRI
Sbjct: 1019 LQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1078

Query: 1466 KEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISI 1287
            KEIINAA+ ISTPIITA L       SARIVKG +EK VLGEVA A++IVLKSSQP + +
Sbjct: 1079 KEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIV 1138

Query: 1286 TLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFEL 1107
             LD + I++L M  S DS++ SILN  K+KLK EHV V  +  LR+ P   D+ ++Q EL
Sbjct: 1139 KLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLEL 1198

Query: 1106 HTLKCMLPKVLVKGISTVERAVINCQKGK-----YNLLVEGTNLLAVMGTPGVDASKTKS 942
            H LK +LPKV+VKGI TVER VI+  K K     Y LLVEGTNLLAVMGTPGVDA+KTKS
Sbjct: 1199 HNLKSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMGTPGVDATKTKS 1258

Query: 941  NHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGM 762
            NH+ME  QTLGIEAAR SII EIQ TM+SHGM+ID RHMMLLAD+MTYKGE+LGITR+G+
Sbjct: 1259 NHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGI 1318

Query: 761  TKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQ 582
             KMK SVLMLASFEKT+EHLFNAS++GR+DQI+GVSECIIMGIPMQLGTGILKVRQR++ 
Sbjct: 1319 AKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDH 1378

Query: 581  LPELKYGPDPII 546
            +PE KY PDPI+
Sbjct: 1379 VPEFKYQPDPIL 1390


>ref|XP_008669237.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Zea mays]
          Length = 1394

 Score = 1884 bits (4880), Expect = 0.0
 Identities = 955/1395 (68%), Positives = 1119/1395 (80%), Gaps = 24/1395 (1%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            MA+  EKLRCTKEP+IE+ G RRIKSIRF   SG EI+KSAEVQ+WN  +YD   +  V 
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRD-MTPVP 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
            +GLLDPR+G   K+  C TCHG F+DCPGHFGYL+L LPVFNVG+FN IL++LKCICK+C
Sbjct: 60   NGLLDPRMGIPTKRGKCNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQL 4119
             R+L  +K+ +EFL K RNP++D  QK+  MKKVR+KCK S C RC + NG V K ++ L
Sbjct: 120  SRVLLIEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGL 179

Query: 4118 AIVESFNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCV 3939
             +V   +K +D   EE   AL + KEKV      +L P  VLSLF++M DEDCELLNL  
Sbjct: 180  IVVHDCSKVLDGHTEELKNALQNKKEKVSASSVLVLDPATVLSLFRRMIDEDCELLNLGD 239

Query: 3938 RPESLIVTDIAIPPAPIRPSVFVGSGQ-SNENGLTVILKNIINTNSHLREALQGALPLYN 3762
            RPE LIVT+IA+PP PIRPSV VG+ + SNE+ +TVILK+I+NTNS L+E L    P   
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVVVGNSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTK 299

Query: 3761 CLERWNLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVIS 3582
            C + W  LQ  VVEY+NS+APS+ +++++GLVQRLKGK GRFR NLSGKR EYTGRTVIS
Sbjct: 300  CFDCWQYLQLQVVEYVNSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVIS 359

Query: 3581 PDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVH 3402
            PDPNLKITEVA+PVLMA+VLTYPERV+++NIEKLRQC+RNGPFK+PGANFVT  D  +  
Sbjct: 360  PDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQS 419

Query: 3401 LKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 3222
            LKY +++  A +LK GC+VERHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNES
Sbjct: 420  LKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNES 479

Query: 3221 VCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 3042
            VCNPYNADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 480  VCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL 539

Query: 3041 ITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVF 2862
            +TRKDTFYDR++F+L+CSY+GDGME+IDLPTPAL+KPVELWTGKQLFSV+VRPNA T+VF
Sbjct: 540  VTRKDTFYDRSSFTLLCSYLGDGMENIDLPTPALIKPVELWTGKQLFSVLVRPNAHTKVF 599

Query: 2861 VNLIVKERIH------------VKDT----ETMCPRDGYVYFRNSDLICGQLGKVTLGNG 2730
            +NL V+E+I+            VK+T    ETMCP DGYVYFRNS+L+ GQ+GK TLGNG
Sbjct: 600  LNLAVQEKIYSKKKGKKEGGEEVKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNG 659

Query: 2729 NKNGLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTID 2550
            NK+GL+SVLLRDYNS  AASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN+QKK  ID
Sbjct: 660  NKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEID 719

Query: 2549 DGYRRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPL 2370
             GY++C   I L+    L L PG +AA+TLE  IT VLNEIR  AG+VCM  LHWRNSPL
Sbjct: 720  GGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPL 779

Query: 2369 IMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSF 2190
            IMSQCGSKGS INISQM+ACVGQQSVGGRRAP+GF++RTLPHFP+ SKTPAAKGFVANSF
Sbjct: 780  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSF 839

Query: 2189 YTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVV 2010
            YTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS++YDQTVR+A+G +V
Sbjct: 840  YTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIV 899

Query: 2009 QFIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHD 1830
            QF+YGDDGMDPAKMEG++G+PLNLDQL+ KV+ATCP++  D+LSP  I  ++ ++  +HD
Sbjct: 900  QFLYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPVGIKQMLEDKFLQHD 959

Query: 1829 MSPEGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEE--ADQKDYSSKMGIVAANISGIS 1656
             S +GGCS+ FK  L++FL KR+  ++ T+  L L E   ++KD S     +AA ISGIS
Sbjct: 960  TSSDGGCSAEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKD-SCLEESIAAIISGIS 1018

Query: 1655 AKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGV 1476
            AKQLQVF++TC+SRY  KK                EPGTQMTLKTFHFAGVASMNVTLGV
Sbjct: 1019 AKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1078

Query: 1475 PRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPY 1296
            PRIKEIINAAK ISTPIITA L       SARIVKG +EK VLGEVA  ++ VLKSS P 
Sbjct: 1079 PRIKEIINAAKKISTPIITAQLLSRKDVLSARIVKGSMEKAVLGEVAATIQTVLKSSLPN 1138

Query: 1295 ISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQ 1116
            + + LD + I+ L M  S DS++ SILN  KLKLK EHV V  +  LR+ P   D+ ++Q
Sbjct: 1139 LVVKLDMQLIETLHMGISADSVKLSILNHPKLKLKSEHVRVIDRAKLRIYPAGTDKLKLQ 1198

Query: 1115 FELHTLKCMLPKVLVKGISTVERAVI-----NCQKGKYNLLVEGTNLLAVMGTPGVDASK 951
             ELH LK +LPKV+VKGI TVER VI     N    +Y LLVEGTNLLAVMGTPGVDA K
Sbjct: 1199 LELHNLKSILPKVIVKGIPTVERVVIDEVKVNNATERYQLLVEGTNLLAVMGTPGVDARK 1258

Query: 950  TKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITR 771
            TKSNH+ME  QTLGIEAAR SII EIQ TM+SHGM+ID RHMMLLAD+MTYKGE+LGITR
Sbjct: 1259 TKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITR 1318

Query: 770  FGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQR 591
            +G+ KMK SVLMLASFEKTAEHLFNAS++GR DQI+GVSECIIMGIPMQLGTGILKVRQR
Sbjct: 1319 YGIAKMKSSVLMLASFEKTAEHLFNASYSGRQDQIEGVSECIIMGIPMQLGTGILKVRQR 1378

Query: 590  VEQLPELKYGPDPII 546
            ++ +PE KY PDPI+
Sbjct: 1379 LDHVPEFKYQPDPIL 1393


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score = 1884 bits (4879), Expect = 0.0
 Identities = 955/1394 (68%), Positives = 1114/1394 (79%), Gaps = 23/1394 (1%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            MA+  EKLRCTKEP++E+ G RRIKS+RF  FSG+EI++SAE Q+WN  +Y  + +K V 
Sbjct: 1    MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIY-GNDMKPVP 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
            +GLLDPR+G ANK   CATCHGS+ +CPGHFGYL+LVLPVFNVG+FN+IL++LK ICK C
Sbjct: 60   NGLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQL 4119
             RIL  +K+ +EFL K RNP+ +   K  +MKKVR+KCK SRC  CG+ NG   K +  L
Sbjct: 120  SRILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGL 179

Query: 4118 AIVESFNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCV 3939
             IV   +KT+D S EE  +ALSH KEK+ +   H L P  VLSLFK+M DEDCELLNL  
Sbjct: 180  LIVHDCSKTLDGSTEELRSALSHKKEKLSISSVHTLDPATVLSLFKRMTDEDCELLNLGD 239

Query: 3938 RPESLIVTDIAIPPAPIRPSVFVGSGQ-SNENGLTVILKNIINTNSHLREALQGALPLYN 3762
            RPE LI+T+IA+PP PIRPSVFVG G+ SNE+G+T IL+NI+NTNS L+  LQ   PL  
Sbjct: 240  RPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMK 299

Query: 3761 CLERWNLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVIS 3582
            C + W LLQ  VVEYINS+APS+ D +N+GLVQRLKGK GRFR NLSGKR EYTGRTVIS
Sbjct: 300  CFDCWQLLQLQVVEYINSDAPSLTDPQNRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVIS 359

Query: 3581 PDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVH 3402
            PDPNL+ITEVA+PVLMA+VLTYPERV+++NIEKLRQC+RNGP KHPGANFVT  D T++H
Sbjct: 360  PDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQPDGTKLH 419

Query: 3401 LKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 3222
            LKY +++  A +LKYGC+VERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES
Sbjct: 420  LKYCDRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 479

Query: 3221 VCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 3042
            VCNPYNADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 480  VCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFL 539

Query: 3041 ITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVF 2862
            ITRKD FYDR+ F+L+CSY+GD ME+IDLPTPA++KP+ELWTGKQLFSV+VRPNA T+V+
Sbjct: 540  ITRKDNFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQLFSVLVRPNACTKVY 599

Query: 2861 VNLIVKERIHVKD-----------TETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGL 2715
            +NL V+E+I++K             ETMCP DGYVYFRNS+L+ GQ+GK TLGNGNK+G+
Sbjct: 600  LNLTVEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLGNGNKDGM 659

Query: 2714 FSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRR 2535
            FSVL+RDYNS  AASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LNQ+KK TID GY  
Sbjct: 660  FSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNQKKKKTIDQGYTE 719

Query: 2534 CISYIELYENRK--LNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMS 2361
            C   I +Y        L PG + A+TLEV ++ +LN++R+ AG+ CM  LHWRNSPLIMS
Sbjct: 720  CHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHCMNTLHWRNSPLIMS 779

Query: 2360 QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTG 2181
            QCGSKGS INISQM+ CVGQQSVGGRRAP+GFIDRTLPHFP+ SKTPAAKGFVANSFYTG
Sbjct: 780  QCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKTPAAKGFVANSFYTG 839

Query: 2180 LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFI 2001
            LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS++YDQTVR+A+  +VQF+
Sbjct: 840  LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQFV 899

Query: 2000 YGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSP 1821
            YGDDGMDP KMEG+ G PLNLDQL+ KV ATCP++  D LSP  I+ ++N++LS+ DMS 
Sbjct: 900  YGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKLSEQDMS- 958

Query: 1820 EGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEE--ADQKDYSSKMGIVAANISGISAKQ 1647
             GGCS  FK LL+ F   R+  LR T+  L L+E     KD SS    +AANISGISAKQ
Sbjct: 959  SGGCSDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKD-SSIEERIAANISGISAKQ 1017

Query: 1646 LQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRI 1467
            LQVF++TC+SRYH K                 EPGTQMTLKTFHFAGVASMNVTLGVPRI
Sbjct: 1018 LQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1077

Query: 1466 KEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISI 1287
            KEIINAAKNISTPIITA L        A  VK  +EK VLGEVA  +KIVLKSSQP + +
Sbjct: 1078 KEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNLVV 1137

Query: 1286 TLDKERIKAL-QMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFE 1110
             LD +RI+A   M  S DS++ SI+   K+KLK EHV V     LR+ P   D++++Q E
Sbjct: 1138 KLDMQRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQLE 1197

Query: 1109 LHTLKCMLPKVLVKGISTVERAVINCQK------GKYNLLVEGTNLLAVMGTPGVDASKT 948
            LHTLK MLPKV+VKGI TVERAV+N  K       +YNLLVEGTNLL V+GTPGVDA KT
Sbjct: 1198 LHTLKSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLLKVLGTPGVDAKKT 1257

Query: 947  KSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRF 768
            KSNH+ME+ QTLGIEAAR SII EI+ T  S+ M ID RHMMLLAD+MTYKGEVLGITRF
Sbjct: 1258 KSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGITRF 1317

Query: 767  GMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRV 588
            G+ KMK SVLMLASFEKT EHLFNAS++GR+D+I+GVSECIIMGIPM LG+GILKVRQR+
Sbjct: 1318 GIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRL 1377

Query: 587  EQLPELKYGPDPII 546
            + LPE  Y PD II
Sbjct: 1378 DHLPEFNYQPDAII 1391


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Setaria
            italica]
          Length = 1397

 Score = 1880 bits (4870), Expect = 0.0
 Identities = 950/1397 (68%), Positives = 1119/1397 (80%), Gaps = 26/1397 (1%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            MA+  EKLRCTKEP+IE+ G RRIKSIRF   SG EI+KSAEVQ+WN  +Y+   +K V 
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYE-HDMKPVP 59

Query: 4478 HGLLDPRLGPANKKTA---CATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCIC 4308
            +GLLD R+G A+KK     C+TCHG F +CPGHFGYL+L LPVFNVG+FN IL++LKCIC
Sbjct: 60   NGLLDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCIC 119

Query: 4307 KACGRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTK 4128
            K C R+L ++K+ +EFL K RNP++D  QK+ IMKKVR+KCK + C RC + NG V K +
Sbjct: 120  KGCSRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRCEYKNGVVKKGR 179

Query: 4127 SQLAIVESFNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLN 3948
              L ++   +K +D   EE   AL H KEKV      +L P   LSLF++M DEDCELLN
Sbjct: 180  VGLIVIHDCSKILDGHTEELKNALQHKKEKVSTSSVRMLDPATALSLFRRMVDEDCELLN 239

Query: 3947 LCVRPESLIVTDIAIPPAPIRPSVFVGSGQ-SNENGLTVILKNIINTNSHLREALQGALP 3771
            L  RPE LIVT+IA+PP PIRPSV VG+ + SNE+ +T ILK+I+NTNS L+E LQ    
Sbjct: 240  LGDRPEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGGL 299

Query: 3770 LYNCLERWNLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRT 3591
               C + W  LQ  VVE++NS+AP + +++++GLVQRLKGK GRFR NLSGKR EYTGRT
Sbjct: 300  FSKCFDCWQQLQLQVVEFVNSDAPCLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRT 359

Query: 3590 VISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDT 3411
            VISPDPNL+ITEVA+PVLMA+VLTYPERV+++N+EKLRQC+RNGP+KHPGANF+   D T
Sbjct: 360  VISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDGT 419

Query: 3410 RVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 3231
            ++ LKY +++  A +LK G  VERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRF
Sbjct: 420  KLSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRF 479

Query: 3230 NESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTS 3051
            NESVCNPYNADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTS
Sbjct: 480  NESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS 539

Query: 3050 SFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQT 2871
            SFL+TRKD FYDR++F+L+CSY+GD ME+IDLPTPAL+KP+ELWTGKQLFSV+VRPNA+T
Sbjct: 540  SFLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNART 599

Query: 2870 RVFVNLIVKERIHVKDTE----------------TMCPRDGYVYFRNSDLICGQLGKVTL 2739
            +VF+NL VKE+I+ K  E                TMCP DGYVYFRNS+L+ GQ+GK TL
Sbjct: 600  KVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKATL 659

Query: 2738 GNGNKNGLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKM 2559
            GNGNK+G++SVLLRDYNS  AASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN+QKK 
Sbjct: 660  GNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKK 719

Query: 2558 TIDDGYRRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRN 2379
             ID+GY++C   I L+    L L PG +AA+TLE +IT VLNEIR  AG+VCM  LHWRN
Sbjct: 720  KIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMDTLHWRN 779

Query: 2378 SPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVA 2199
            SPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDRTLPHFP+ SKTPAAKGFVA
Sbjct: 780  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFVA 839

Query: 2198 NSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANG 2019
            NSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS++YDQTVR+A+G
Sbjct: 840  NSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASG 899

Query: 2018 AVVQFIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLS 1839
             +VQF+YGDDGMDPAKMEG++G PLNLDQL+ KV ATCP +  D+LSP  I  ++ ++L+
Sbjct: 900  GIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQMLEDKLT 959

Query: 1838 KHDMSPEGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEEAD-QKDYSSKMGIVAANISG 1662
            +H  S +GGCS  FK  L  FL +R+  L+ T+  L L+E    K+ S    I+AANISG
Sbjct: 960  QHKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDSCIEEIIAANISG 1019

Query: 1661 ISAKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTL 1482
            ISAKQLQVF++TC SRY+ K                 EPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1020 ISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1079

Query: 1481 GVPRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQ 1302
            GVPRIKEIINAAK ISTPIIT  L       SARIVKG +EK VLGEVA A+KIVLKSSQ
Sbjct: 1080 GVPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQ 1139

Query: 1301 PYISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNR 1122
            P + + LD + I+AL M  S DS++ SILN  K+KLK EHV V  +  LR+ P   D+++
Sbjct: 1140 PNLVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSK 1199

Query: 1121 VQFELHTLKCMLPKVLVKGISTVERAVINCQK-----GKYNLLVEGTNLLAVMGTPGVDA 957
            +Q ELH LK MLPKV+VKGI TVER VI+ +K      KYNLLVEGTNLLAVMGTPGVDA
Sbjct: 1200 LQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTNLLAVMGTPGVDA 1259

Query: 956  SKTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGI 777
              TKSNH+ME+  TLGIEAAR SII EIQ TM+SHGM+ID RHMMLLAD+MTYKGEVLGI
Sbjct: 1260 RNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGI 1319

Query: 776  TRFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVR 597
            TR+G+ KMK SVLMLASFEKT+EHLFNAS++GR+D+I+GVSECIIMGIPMQLGTGILKVR
Sbjct: 1320 TRYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVR 1379

Query: 596  QRVEQLPELKYGPDPII 546
            QR++ LPELKY PDPI+
Sbjct: 1380 QRLDHLPELKYQPDPIL 1396


>emb|CDM82865.1| unnamed protein product [Triticum aestivum]
          Length = 1395

 Score = 1873 bits (4853), Expect = 0.0
 Identities = 949/1396 (67%), Positives = 1112/1396 (79%), Gaps = 25/1396 (1%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            M +  EKLRCTKEP+IE+ G RRIKS+RF  FSG+EI++SAE Q+WN  +Y+ + +K   
Sbjct: 1    MLRQEEKLRCTKEPFIEDVGTRRIKSMRFSMFSGKEIRQSAEAQVWNNRIYEPN-MKPAP 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
            +GLLD R+G ANK+  C TCHGS+T+CPGHFGYL+L LPVFNVG+FN+IL+++KCICK C
Sbjct: 60   NGLLDTRMGAANKQGECGTCHGSYTECPGHFGYLKLALPVFNVGFFNNILDVVKCICKGC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSRCVRCGHNNGTVTKTKSQL 4119
             R+L  +K+ +EFL K R P+++   K  +MKKVR+KCK SRC  CG  NG   K +  L
Sbjct: 120  SRVLLVEKDRREFLKKMRQPRAEPLVKFALMKKVRDKCKLSRCPWCGFINGVAKKGRMGL 179

Query: 4118 AIVESFNKTVDASMEECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCV 3939
             IV   +KT+D S EE  +ALSH KEK+ +   H L P  VLSLF++M DEDCELLNL  
Sbjct: 180  VIVHDCSKTLDGSTEELRSALSHKKEKLAITSIHTLDPATVLSLFRRMIDEDCELLNLGD 239

Query: 3938 RPESLIVTDIAIPPAPIRPSVFVGSG---QSNENGLTVILKNIINTNSHLREALQGALPL 3768
            RPE LI+T+IA+PP PIRPSVFVG G    SNE+ +T ILKNI+NTNS L+  LQ   PL
Sbjct: 240  RPEKLIITEIAVPPVPIRPSVFVGGGGGRMSNEDSITCILKNIVNTNSILKGTLQSGEPL 299

Query: 3767 YNCLERWNLLQGLVVEYINSEAPSVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTV 3588
              C + W  LQ  VVEYINS+AP ++D++++GL+QRLKGK GRFR NLSGKR EYTGRTV
Sbjct: 300  VKCFDCWQHLQLQVVEYINSDAPCLIDSQHRGLIQRLKGKTGRFRGNLSGKRTEYTGRTV 359

Query: 3587 ISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTR 3408
            ISPDPNL+ITEVA+P+LMA+VLTYPERV+++NIEKLRQC+RNGP KHPGANF+   D T+
Sbjct: 360  ISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFILQPDGTK 419

Query: 3407 VHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 3228
            +HLKY +++  A +LKYGC+VERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFN
Sbjct: 420  LHLKYCDRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 479

Query: 3227 ESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSS 3048
            ESVCNPYNADFDGDEMNLHVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSS
Sbjct: 480  ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 539

Query: 3047 FLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTR 2868
            FLITRKD+FYDR++F+L+CSY+GD ME+IDLPTPAL+KP+ELWTGKQLFSV+VRPNA T+
Sbjct: 540  FLITRKDSFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAFTK 599

Query: 2867 VFVNLIVKERIHVKDT-------------ETMCPRDGYVYFRNSDLICGQLGKVTLGNGN 2727
            V++NL V+E+I  K               + MCP DG+VYFRNS+L+ GQ+GK TLGNGN
Sbjct: 600  VYLNLGVREKICTKKCPLTVEDKTSEAVHDAMCPNDGFVYFRNSELLSGQVGKKTLGNGN 659

Query: 2726 KNGLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDD 2547
              G+FSVL+RDYNS  AASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN++K  TI +
Sbjct: 660  NEGMFSVLIRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNEKKGKTIGE 719

Query: 2546 GYRRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLI 2367
            GY+ C   I  Y    L  +PG S A+TLE  I+ VLN++R TAGD CM  LHWRNSPLI
Sbjct: 720  GYQECHELIAQYSKGALKPQPGCSRAQTLEARISGVLNKLRDTAGDHCMSTLHWRNSPLI 779

Query: 2366 MSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFY 2187
            MSQCGSKGS INISQM+ CVGQQSVGGRRAPNGFIDRTLPHFP+ SKTPAAKGFVANSFY
Sbjct: 780  MSQCGSKGSPINISQMVVCVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFY 839

Query: 2186 TGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQ 2007
            TGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS++YDQTVR+A+G +VQ
Sbjct: 840  TGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQ 899

Query: 2006 FIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDM 1827
            F+YGDDGMDP KMEG+ G PLNLDQL+ KV+ATCP++  ++LSP  I  ++N++LS+ D 
Sbjct: 900  FVYGDDGMDPVKMEGKGGNPLNLDQLFMKVMATCPQRGHETLSPEGISQMLNDKLSEQDP 959

Query: 1826 SPEGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEE--ADQKDYSSKMGIVAANISGISA 1653
            S  GGCS  FK LL+ F+  R+  LR T+  L L+E    +KD SS    VAANISGISA
Sbjct: 960  S-AGGCSDRFKELLTKFVGNRIKMLRNTRRALHLDEDHVGRKD-SSIEECVAANISGISA 1017

Query: 1652 KQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1473
            KQLQVF++TC+SRYH K                 EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1018 KQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1077

Query: 1472 RIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYI 1293
            RIKEIINAAK ISTPIITA L     E     VK  IEK VLGEVA A+KIVLKSSQP +
Sbjct: 1078 RIKEIINAAKKISTPIITAELLSGQDESFGVKVKRCIEKVVLGEVAAAIKIVLKSSQPNL 1137

Query: 1292 SITLDKERIKALQMEA-SFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQ 1116
             + LD +RI+A   E  S DS++ SI+N  KLKLK +HV V  +  LR+ P   DR+++Q
Sbjct: 1138 VVKLDMQRIEAQGYEGISADSVQLSIINYPKLKLKSQHVRVIDEAKLRIYPDGTDRSKLQ 1197

Query: 1115 FELHTLKCMLPKVLVKGISTVERAVINCQKG------KYNLLVEGTNLLAVMGTPGVDAS 954
            FELH LK MLPKV+VKGI TVERAV+N  KG      +YNLLVEGTNLLAV+G PGVDA 
Sbjct: 1198 FELHNLKSMLPKVIVKGIQTVERAVVNPVKGRDKTIERYNLLVEGTNLLAVLGAPGVDAM 1257

Query: 953  KTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGIT 774
            KTKSNH+ME+ QTLGIEAAR SII EIQ T  S+ M ID RHMMLLAD+MTYKGEVLGIT
Sbjct: 1258 KTKSNHIMEVNQTLGIEAARRSIIDEIQYTFESNNMIIDLRHMMLLADLMTYKGEVLGIT 1317

Query: 773  RFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQ 594
            R+G+ KMK SVLMLASFEKT+EHLFNAS+ GR+DQI GVSECIIMGIPMQLGTGILKVRQ
Sbjct: 1318 RYGIAKMKSSVLMLASFEKTSEHLFNASYAGREDQIDGVSECIIMGIPMQLGTGILKVRQ 1377

Query: 593  RVEQLPELKYGPDPII 546
            R+E LPE KY P PI+
Sbjct: 1378 RLESLPEFKYQPAPIM 1393


>ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nelumbo
            nucifera]
          Length = 1392

 Score = 1858 bits (4812), Expect = 0.0
 Identities = 946/1393 (67%), Positives = 1110/1393 (79%), Gaps = 22/1393 (1%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            MA   +++  TKEPYIE+ GPR+IKSIRF  FSG+EI+K+AEVQ+W    YD +  K ++
Sbjct: 1    MANTQDRMLFTKEPYIEDVGPRKIKSIRFSMFSGDEIRKAAEVQVWRSVYYDVNR-KPID 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
             GLLD R+GPA+K   C TC GSFTDCPGHFGYL L LPVFNVGYF++IL+ILKCICK+C
Sbjct: 60   DGLLDSRMGPASKSGICTTCDGSFTDCPGHFGYLNLALPVFNVGYFSTILDILKCICKSC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKC-------KPSRCVRCGHNNGTV 4140
             RIL  +++ K++L K R+ K+D  QKN +MK++ +KC       K  +C RCG+ NG V
Sbjct: 120  ARILLEEEKRKDYLKKMRSSKADALQKNNLMKQIVKKCTTMLSSKKALKCTRCGYINGFV 179

Query: 4139 TK------TKSQLAIVESFNKTVDASMEECLAALSHLKE-KVPVQPHHLLTPFKVLSLFK 3981
             K      T S L IV   +K  D S+EEC +A+SH KE K   +  H+L P ++L+LFK
Sbjct: 180  KKGASISGTGSTLGIVHDRSKVNDESLEECSSAISHKKESKASFRVVHVLNPVRILALFK 239

Query: 3980 KMPDEDCELLNLCVRPESLIVTDIAIPPAPIRPSVFVGSG-QSNENGLTVILKNIINTNS 3804
            +M DEDCELL L  RPE LI+TDIA+PP  IRPSVF+ +G  SNE+ +T  L  II  N+
Sbjct: 240  RMVDEDCELLYLYDRPEKLIITDIAVPPIAIRPSVFMDAGTMSNEDDITSKLSAIIRANA 299

Query: 3803 HLREALQGALPLYNCLERWNLLQGLVVEYINSEAPSVLDAKN-----QGLVQRLKGKQGR 3639
             LR+ LQGA P   CL  W+ LQ  V +YINS+   +  +       +G VQRLKGKQGR
Sbjct: 300  PLRQDLQGANPKSKCLLDWDQLQIEVAQYINSDVRGIPTSMQPSKPLRGFVQRLKGKQGR 359

Query: 3638 FRCNLSGKRVEYTGRTVISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNG 3459
            FR NLSGKRVEYTGRTVISPDPNLKITEVA+P+LMAQ+LTYPERV+HHNIEKLRQCVRNG
Sbjct: 360  FRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSHHNIEKLRQCVRNG 419

Query: 3458 PFKHPGANFVTLLDDTRVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMS 3279
              K+PGANF+   D + ++L++  +K  A+ELKYG +VERHLEDGDIVLFNRQPSLHRMS
Sbjct: 420  SQKYPGANFIRYPDGSIMNLRFSARKRAADELKYGYIVERHLEDGDIVLFNRQPSLHRMS 479

Query: 3278 IMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTP 3099
            IMSHRARIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQNNLCTP
Sbjct: 480  IMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTP 539

Query: 3098 KNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELW 2919
            KNG ILVASTQDFLTS+FLITRKDTFYDRAAFSLMCSY+GDGM+ +DLPTPAL+KP+ELW
Sbjct: 540  KNGAILVASTQDFLTSAFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELW 599

Query: 2918 TGKQLFSVIVRPNAQTRVFVNLIVKERIHVKDTETMCPRDGYVYFRNSDLICGQLGKVTL 2739
            TGKQLFSV+VRP+A  RV++NL V E+  VK  ETMCP DG+VYFRNS+LICGQLGK TL
Sbjct: 600  TGKQLFSVLVRPHAHMRVYLNLTVLEKNCVKQKETMCPNDGFVYFRNSELICGQLGKATL 659

Query: 2738 GNGNKNGLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKM 2559
            GNGNK+GLFSVLLRDYN+  AASCMNR+AKLSARWIGNHGFSIGIDDVQPGE L  +KK 
Sbjct: 660  GNGNKDGLFSVLLRDYNAHAAASCMNRIAKLSARWIGNHGFSIGIDDVQPGELLKDKKKE 719

Query: 2558 TIDDGYRRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRN 2379
            TI+DGY+ C   I  Y    L L PG  AA+TLE +IT  LNEIR+    VCM+ELHWRN
Sbjct: 720  TIEDGYKACDELIHSYNKGNLELEPGCDAAQTLEAQITRKLNEIREETAAVCMQELHWRN 779

Query: 2378 SPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVA 2199
            SPLIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDR+LPHFP KSKTPAAKGFVA
Sbjct: 780  SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVA 839

Query: 2198 NSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANG 2019
            NSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K+LEDL++YYD TVR+A+G
Sbjct: 840  NSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLAVYYDDTVRNASG 899

Query: 2018 AVVQFIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLS 1839
             VVQF+YGDDG+DPA MEG+ GIPLNL+++Y K  ATCP     SL PS I+ ++++R+S
Sbjct: 900  GVVQFLYGDDGLDPANMEGKKGIPLNLERVYLKTKATCPSGTNASLCPSEIVKILDDRIS 959

Query: 1838 KHDMSPEGGCSSAFKNLLSDFLHKRVAELRKTKTRLQL-EEADQKDYSSKMGIVAANISG 1662
            ++DM+P+GGCSSAFK LL DF+  R++ LR T+  L L EE  +KD S  +  +AANISG
Sbjct: 960  RYDMTPDGGCSSAFKKLLVDFIQNRISILRNTRKALGLDEEYAKKDNSDILEHIAANISG 1019

Query: 1661 ISAKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTL 1482
            I+ +QL+VF+ETCISRYH K+                EPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1020 ITTQQLKVFLETCISRYHLKRIEAGAAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1079

Query: 1481 GVPRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQ 1302
            GVPRIKEIIN AKNISTPIITATL CDD  +SARIVKG IEKTVLGEVA+++KIV+   Q
Sbjct: 1080 GVPRIKEIINGAKNISTPIITATLECDDNVKSARIVKGCIEKTVLGEVAKSIKIVMTQRQ 1139

Query: 1301 PYISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNR 1122
              I I+LD  RI+A Q++ S DS++ SIL     K KP+ + V     L V+P  +DR++
Sbjct: 1140 ASIVISLDMARIEAAQLKISADSVKESILKHLNPKFKPK-IVVDKGYKLIVIPTESDRSK 1198

Query: 1121 VQFELHTLKCMLPKVLVKGISTVERAVINCQK-GKYNLLVEGTNLLAVMGTPGVDASKTK 945
            + FELH LK +LP+V+VKGISTV+RAVIN  K GKYNLLVEGTNLL VMGTPGVD  KT 
Sbjct: 1199 LHFELHNLKAVLPQVIVKGISTVQRAVINKSKDGKYNLLVEGTNLLGVMGTPGVDGCKTT 1258

Query: 944  SNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFG 765
            SNH++E+  TLGIEAAR  II EIQ TM  HGM ID RHMMLLAD+MTYKGEVLGITR G
Sbjct: 1259 SNHIIEVQGTLGIEAARRCIIDEIQYTMGKHGMDIDIRHMMLLADLMTYKGEVLGITRTG 1318

Query: 764  MTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVE 585
            + KMK+SVLMLASFEKTA+HLFNAS NGRDD+I+GVSECII+GIPMQ+GTGILKV QR  
Sbjct: 1319 IQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIILGIPMQIGTGILKVIQRYP 1378

Query: 584  QLPELKYGPDPII 546
            Q+P+L Y PDPII
Sbjct: 1379 QVPQLSYKPDPII 1391


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Vitis
            vinifera]
          Length = 1383

 Score = 1764 bits (4568), Expect = 0.0
 Identities = 910/1385 (65%), Positives = 1074/1385 (77%), Gaps = 21/1385 (1%)
 Frame = -3

Query: 4637 LRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLDPR 4458
            ++ TKEPYIE+ GPR+I+SIRF  FS  EI K+AEVQ+W    YDA+  K +E+GLLDPR
Sbjct: 5    IQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANR-KPIENGLLDPR 63

Query: 4457 LGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILFSD 4278
            +GPANK   CATC G+F DCPGH GYL L LPV+NVGY ++I++ILKCICK+C R+L  +
Sbjct: 64   MGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDE 123

Query: 4277 KEHKEFLVKTRNPKSDVHQKNMIMKKVREKC-------KPSRCVRCGHNNGTVTKTKSQL 4119
            K  K++L K R+ K +  +K  +MKK+ +KC       K  +C RCG+ NG V K  S L
Sbjct: 124  KASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVL 183

Query: 4118 AIVESFNKTVDASMEECLAALSHLKE-KVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLC 3942
             I+   +K  D S+EEC +A+SH KE K       +L P KVLSLFK+M DEDC+LLNL 
Sbjct: 184  GIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLA 243

Query: 3941 VRPESLIVTDIAIPPAPIRPSVFVGSG-QSNENGLTVILKNIINTNSHLREALQGALPLY 3765
             RPE L++T+I +PP  IRPSVF+  G QSNEN +T  LK II  N+ L + LQ      
Sbjct: 244  ERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTS 303

Query: 3764 NCLERWNLLQGLVVEYINSEA---PSVLDAKN--QGLVQRLKGKQGRFRCNLSGKRVEYT 3600
             CL  W+ LQ  V +YINS+    P  + A     G VQRLKGKQGRFR NLSGKRVEYT
Sbjct: 304  KCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYT 363

Query: 3599 GRTVISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLL 3420
            GRTVISPDPNLKITEVA+P+LMA++L+YPERV+HHNIEKLRQC+ NGPFK+PGA  +   
Sbjct: 364  GRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYP 423

Query: 3419 DDTRVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRT 3240
            D +   L +  +K  A+ELKYG +VERHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRT
Sbjct: 424  DGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRT 483

Query: 3239 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDF 3060
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDF
Sbjct: 484  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 543

Query: 3059 LTSSFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPN 2880
            LTSSFLITRKDTFYDRAAFSLMCSY+GDGM+ +DLPTPA++KPVELWTGKQLF+V++RP+
Sbjct: 544  LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPH 603

Query: 2879 AQTRVFVNLIVKERIHVK--DTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSV 2706
            A  RV++NL V E+ + K    ETMCP DG+VYFRNS+LI GQLGK TLGNGNK+GLFSV
Sbjct: 604  ANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSV 663

Query: 2705 LLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCIS 2526
            LLRDYN+  AA+CMNRLAKLSARWIGNHGFSIGIDDVQPG  LN QK   I++GY  C  
Sbjct: 664  LLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHE 723

Query: 2525 YIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSK 2346
             I+ Y   KL L+PG +AA+TLE EIT VLN+IR+T  +VCM+ELHWRNSPLIMSQCGSK
Sbjct: 724  LIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSK 783

Query: 2345 GSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLTATE 2166
            GS INISQMIACVGQQSVGGRRAP+GFIDRTLPHFP KSKTP AKGFVA+SFYTGLTATE
Sbjct: 784  GSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATE 843

Query: 2165 FFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFIYGDDG 1986
            FFFHTMGGREGLVDTAVKTA+TGYMSRRLMK+LEDLS+ YD+TVR+ANG++VQF+YGDDG
Sbjct: 844  FFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDG 903

Query: 1985 MDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSPEGGCS 1806
            MDPA+MEG++G PLN ++L+ KV ATCP     SLS  +I + V +RL +H+ S E GCS
Sbjct: 904  MDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAE-GCS 961

Query: 1805 SAFKNLLSDFLHKRVAELRKTKTRLQLE----EADQKDYSSKMGIVAANISGISAKQLQV 1638
             AFK  LS FL +   + + T+  L L       +  D   K    A NISGI++KQLQV
Sbjct: 962  DAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKF---AKNISGITSKQLQV 1018

Query: 1637 FMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1458
            F++TCISRY  K+                EPGTQMTLKTFHFAGVASMNVTLGVPRIKEI
Sbjct: 1019 FLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1078

Query: 1457 INAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITLD 1278
            IN AK ISTPIITA L C++  ++AR+VKG IE+T LG+VA+++KIVL S    I++ LD
Sbjct: 1079 INGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALD 1138

Query: 1277 KERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHTL 1098
             E I+A Q+    + +R SIL  R++KLK +H+ V   G L V  P  DR+ + FELH L
Sbjct: 1139 MEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEV-HPQGDRSTIHFELHAL 1197

Query: 1097 KCMLPKVLVKGISTVERAVIN-CQKGKYNLLVEGTNLLAVMGTPGVDASKTKSNHVMEIW 921
            K +LP V+VKGI TVERAVIN   K KYNLLVEGT L  VMGT GV   +T SNH++E+ 
Sbjct: 1198 KNLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQ 1257

Query: 920  QTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKMKDSV 741
            QTLGIEAAR  II EIQ TM SHGMSID RHMMLLAD+MT++GEVLGITRFG+ KM  SV
Sbjct: 1258 QTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSV 1317

Query: 740  LMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQLPELKYG 561
            LMLASFEKTA+HLFNAS +GRDD+I+GVSECIIMGIPMQLGTGILKVRQR++Q+PEL YG
Sbjct: 1318 LMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYG 1377

Query: 560  PDPII 546
             DPII
Sbjct: 1378 LDPII 1382


>ref|XP_010236212.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1382

 Score = 1753 bits (4541), Expect = 0.0
 Identities = 898/1386 (64%), Positives = 1069/1386 (77%), Gaps = 41/1386 (2%)
 Frame = -3

Query: 4580 IRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLDPRLGPANKKTACATCHGSFTD 4401
            +RF   SG+EI++SA  Q+WN  +YD SS+K V +GLLDPR+G ++K   CATCHGS+T+
Sbjct: 1    MRFCTLSGKEIRQSAAAQVWNTRIYD-SSLKPVPNGLLDPRMGASDKCGECATCHGSYTE 59

Query: 4400 CPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILFSDKEHKEFLVKTRNPKSDVHQ 4221
            CPGHFGY++L LPVFNVGYFN IL +LKCICK C R+L ++  H+EFL K RNP++D   
Sbjct: 60   CPGHFGYIKLALPVFNVGYFNKILAVLKCICKGCSRVLLTENIHQEFLKKMRNPRAD--- 116

Query: 4220 KNMIMKKVREKCKPSRCVRCGHNNGTVTKT-----KSQLAIVESFNKTVDASMEECLAAL 4056
            ++ IM KVR+KC+PSRC  CG+ NG V K      K  + IV   +K +DAS EE  + L
Sbjct: 117  RSSIMIKVRDKCRPSRCSWCGYINGIVKKEGRRALKQTVVIVHDCSKNLDASTEEVRSVL 176

Query: 4055 SHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCVRPESLIVTDIAIPPAPIRPSV 3876
            SH KEK+ +   H L P  VLSLF+++ DEDCELL +  RPE+LI+TDIA+PP PIRPS 
Sbjct: 177  SHKKEKLSITSVHTLDPVTVLSLFRRITDEDCELLAIGERPENLIITDIAVPPVPIRPSR 236

Query: 3875 FV-GSGQSNENGLTVILKNIINTNSHLREALQGALPLYNCLERWNLLQGLVVEYINSEAP 3699
            FV G+  SNE+ +T IL+NI+N NSHL+  +Q       C   W  LQ  V+EYINS+A 
Sbjct: 237  FVAGTTMSNEDSITSILRNIVNANSHLKLTIQDGQVPMKCFTWWEQLQDNVIEYINSDAS 296

Query: 3698 SVLDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTVISPDPNLKITEVAVPVLMAQVLT 3519
            S+ D+K+ GL+QRLKGK GRFR NLSGKR E+TGRTVISPDPNL+ITEVA+PVLMA+VLT
Sbjct: 297  SLQDSKDCGLIQRLKGKTGRFRGNLSGKRTEHTGRTVISPDPNLRITEVAIPVLMARVLT 356

Query: 3518 YPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTRVHLKYVEKKNVANELKYGCVVER 3339
            YPERVT++NIEKLRQC+RNGP KHPGANF+   D+T++HL Y ++   A +LKYGC+VER
Sbjct: 357  YPERVTYYNIEKLRQCIRNGPHKHPGANFIIQPDETKLHLNYCDRSRAARDLKYGCIVER 416

Query: 3338 HLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQT 3159
            HLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQT
Sbjct: 417  HLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQT 476

Query: 3158 EEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYIG 2979
            EEARTEAF LMGVQ+NLCTPKNGEILVASTQDFLTSSFL+TRKDTFYDR+ F+L+CSY+G
Sbjct: 477  EEARTEAFLLMGVQSNLCTPKNGEILVASTQDFLTSSFLVTRKDTFYDRSYFTLLCSYLG 536

Query: 2978 DGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTRVFVNLIVKERIHVKD-------- 2823
            D ME+IDLPTPA++KPVELWTGKQLFSV+VRPNA T+VF+NL V+E++++K         
Sbjct: 537  DAMENIDLPTPAIIKPVELWTGKQLFSVLVRPNACTKVFLNLTVEEKVYIKHKERDKKAI 596

Query: 2822 ---TETMCPRDGYVYFRNSDLICGQLGKVTL-----------GNGNKNGLFSVLLRDYNS 2685
                ETMCP DG+VYFRNS+L+ GQLGK TL           GNGNK G+FSVLLRDYNS
Sbjct: 597  TVLEETMCPNDGFVYFRNSELLSGQLGKKTLANQNLFHVLSPGNGNKEGMFSVLLRDYNS 656

Query: 2684 DVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCISYIELYEN 2505
              AASCMNRLAK SAR+IGNHGFSIG+DDVQPG+ LN++KK+ ID+GY  C   I LY  
Sbjct: 657  HAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGQSLNKKKKVIIDEGYEECNKLIALYSK 716

Query: 2504 RKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGSAINIS 2325
              L  +PG S A+TLE +I+ VLN++R+TAGD CM  LHWRNSPLIMSQCGSKGS INIS
Sbjct: 717  GHLKPQPGCSRAQTLESQISCVLNKLRETAGDDCMSTLHWRNSPLIMSQCGSKGSPINIS 776

Query: 2324 QMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLTATEFFFHTMG 2145
            QM+ CVGQQSVGG RAPNGFIDRTLPHFP+ SKTPAAKGFVANSFYTGLTA+EFFFHTMG
Sbjct: 777  QMVVCVGQQSVGGCRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTASEFFFHTMG 836

Query: 2144 GREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFIYGDDGMDPAKME 1965
            GREGLVDTAVKTA+TGY+SRRLMK LEDLS++YDQTVR+A+G +VQF+YGDDGMDP KME
Sbjct: 837  GREGLVDTAVKTADTGYLSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKME 896

Query: 1964 GENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSPEGGCSSAFKNLL 1785
            G+ G PLNLDQL+ KV ATCP++  D+LSP  I+ + N+ L K + S  G CS   K +L
Sbjct: 897  GKGGSPLNLDQLFMKVKATCPQRGHDTLSPDVILQMFNDTLFKQETS-SGRCSDKLKEML 955

Query: 1784 SDFLHKRVAELRKTKTRLQLEE--ADQKDYSSKMGIVAANISGISAKQLQVFMETCISRY 1611
            + FL  RV  LR T+  L ++E    ++D SS    +AA+ISGISAKQLQVF++TC SRY
Sbjct: 956  TKFLEDRVKMLRSTRRALHIDEDHVGRRD-SSVEECIAADISGISAKQLQVFLDTCFSRY 1014

Query: 1610 HKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNIST 1431
            H K                 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK  ST
Sbjct: 1015 HSKIIEAGASVGPIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKTST 1074

Query: 1430 PIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITLDKERIKAL-Q 1254
            PIIT  L     +  A  VK  IEK VLGEVA A+ IV K +   + + LD ERI+A   
Sbjct: 1075 PIITTELLSGQDKSFAVKVKSSIEKVVLGEVAAAINIVFKETDSNLVVKLDMERIEAQGY 1134

Query: 1253 MEASFDSIRHSILNQRK----LKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHTLKCML 1086
            M  S DS+R SILN R+    LKL  EHV V  +  LR+      ++ +  ELH LK ML
Sbjct: 1135 MGISSDSVRLSILNHRRIRLELKLTSEHVCVVDQAKLRIHAAGKGKSGLLLELHNLKSML 1194

Query: 1085 PKVLVKGISTVERAVIN------CQKGKYNLLVEGTNLLAVMGTPGVDASKTKSNHVMEI 924
            PKV+VKGI TVERAV+N          +YNLLVEGTNLLAV+GTPGVDA KTKSNH+ME+
Sbjct: 1195 PKVIVKGIPTVERAVVNPVFRHDKTFDRYNLLVEGTNLLAVLGTPGVDAKKTKSNHIMEV 1254

Query: 923  WQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKMKDS 744
             QTLGIEAAR SII EI+ T  ++ M ID RHMMLLADVMT KGEVL +T  G+ KMK S
Sbjct: 1255 SQTLGIEAARRSIIDEIRYTFENNNMMIDLRHMMLLADVMTSKGEVLPMTAHGIAKMKTS 1314

Query: 743  VLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQLPELKY 564
            VLMLASFE+T +HLFNAS+ GR D+I+GVSEC+IMG+PM+ GTGILKV+QR+  LPE +Y
Sbjct: 1315 VLMLASFERTMDHLFNASYAGRVDEIEGVSECVIMGMPMKPGTGILKVKQRLPDLPEFQY 1374

Query: 563  GPDPII 546
             PDP++
Sbjct: 1375 QPDPLV 1380


>ref|XP_006828249.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Amborella trichopoda] gi|548832896|gb|ERM95665.1|
            hypothetical protein AMTR_s00023p00196820 [Amborella
            trichopoda]
          Length = 1383

 Score = 1737 bits (4499), Expect = 0.0
 Identities = 904/1383 (65%), Positives = 1068/1383 (77%), Gaps = 17/1383 (1%)
 Frame = -3

Query: 4643 EKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLD 4464
            E    TK+P++E+ GPR+IKS++F   SG EI K+AE Q++    Y+ + +K  EHG+LD
Sbjct: 6    EAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAEHGVLD 65

Query: 4463 PRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILF 4284
             R+G + K  +CATC G F  CPGHFGYL+L LPVF+VGYF + + +L+CICK+C RIL 
Sbjct: 66   TRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSCARILL 125

Query: 4283 SDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSR-CVRCGHNNGTVTKTKSQLAIVE 4107
             ++E K+FL K RNP++++HQKN  +KKV +KCK  R C RCG  NG V K      I  
Sbjct: 126  FEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPTFRISH 185

Query: 4106 SFNKT-VDASMEECLAALSHLK-EKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCVRP 3933
              +K   D   +EC  A+S  K           LTP + L+LF++M DEDC+LL L  RP
Sbjct: 186  DRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLYLYDRP 245

Query: 3932 ESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLREAL-QGALPLYNCL 3756
            E LI+T IA+PPA IRP+   GS + NEN LT  L  I+  N  L + + +G LP Y  +
Sbjct: 246  EKLIITHIAVPPAGIRPTYQSGS-RLNENELTTKLWEIVQINHTLIDHVNKGNLPQYY-M 303

Query: 3755 ERWNLLQGLVVEYINSEAPSVL-----DAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRT 3591
            + W LLQ  V  YINSE PS+           GLVQRLKGKQGRFR NL GKRV++TGRT
Sbjct: 304  DTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVDFTGRT 363

Query: 3590 VISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDT 3411
            VISPDPNLKITEVA+P LMAQ+LTY ERVT HNIEKLRQCVRNGP K+PGANFV    DT
Sbjct: 364  VISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFVISGGDT 423

Query: 3410 RVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 3231
             + L+Y  KK  A+ELK+G  VERHLEDG+IVLFNRQPSLHRMSIM HRAR+MPWRTLRF
Sbjct: 424  -LSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTLRF 482

Query: 3230 NESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTS 3051
            NESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQ+NLCTPKNGEILVASTQDFLTS
Sbjct: 483  NESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFLTS 542

Query: 3050 SFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQT 2871
            S+LITRKDTFYDRA FSLMCSY+GDGME+IDLPTPALLKPVELWTGKQLFSV++RP+A  
Sbjct: 543  SYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHAHM 602

Query: 2870 RVFVNLIVKERIHVKDTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSVLLRDY 2691
            +V+VNL + E+ + K  ETMC  DG+VY RNS+LI GQLGK TLGNGNK+GLFSVLLRDY
Sbjct: 603  KVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLRDY 662

Query: 2690 NSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCISYIELY 2511
            NS  AASCMNRLAKLSARWIGNHGFSIGIDDV PG  L +QK+  I  GY  C ++I+ Y
Sbjct: 663  NSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFIDAY 722

Query: 2510 ENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGSAIN 2331
            +  KL+L+PG +AA+TLE EIT VLN IR  A  VCM+ELHWRNSPLIMSQCGSKGS IN
Sbjct: 723  DKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSPIN 782

Query: 2330 ISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLTATEFFFHT 2151
            ISQMIACVGQQSVGGRRAPNGFIDR+LPHFP   KTPAAKGFVANSFYTGLTA EFFFHT
Sbjct: 783  ISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFFHT 842

Query: 2150 MGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFIYGDDGMDPAK 1971
            MGGREGLVDTAVKTA+TGY+SRRL+KSLEDLS +YD TVR+++G ++QF YGDDGMDPAK
Sbjct: 843  MGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDPAK 902

Query: 1970 MEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSPEGGCSSAFKN 1791
            MEG++G+PLNLD+L+ K+ ATCP     SLSPS I  +VN+RLSKHDM+PE GCS AFK 
Sbjct: 903  MEGKSGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKE 962

Query: 1790 LLSDFLHKRVAELRKTKTRLQL-EEADQKDYSSKMGIVAANISGISAKQLQVFMETCISR 1614
             LS+F+ KR+  ++KT+  L L E+   K+  S +  VAANISGIS +QL+VF+ETCISR
Sbjct: 963  ELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLETCISR 1022

Query: 1613 YHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNIS 1434
            YH K+                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEI+ A+K IS
Sbjct: 1023 YHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGASKKIS 1082

Query: 1433 TPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITLDKERIKALQ 1254
            TPIITATL CD+ E+SARIVKG IEKT+LGEVA+ VKI +  +Q  I+ITLD +RI+ALQ
Sbjct: 1083 TPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRIEALQ 1142

Query: 1253 MEASFDSIRHSI-------LNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHTLK 1095
            M     ++  SI       +++ KLK+KP   T      L++L P   R  V + LH L+
Sbjct: 1143 MAIDAKTVADSISENLKAKVSRTKLKVKP---TFTLPDKLKILLPEIGRKEVLYSLHLLQ 1199

Query: 1094 CMLPKVLVKGISTVERAVINCQKGKYNLLVEGTNLLAVMGTPGVDASKTKSNHVMEIWQT 915
             +LPK++VKGI TVERAVIN  KGK NLLVEGTNLLAVMGTPGVD   T SNH++E+  T
Sbjct: 1200 SLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGT 1259

Query: 914  LGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKMKDSVLM 735
            LGIEAAR SII EIQ TM+SHGMSID RHMMLLAD+MT++G VLGI RFG+TKMK+SVLM
Sbjct: 1260 LGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLM 1319

Query: 734  LASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQRVEQLPELKYGPD 555
            LASFE+TA+ LF+A+  GR D I GVSECIIMG+PMQ+GTGIL V+QR EQL +L YGPD
Sbjct: 1320 LASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRPEQLAKLTYGPD 1379

Query: 554  PII 546
            PII
Sbjct: 1380 PII 1382


>ref|XP_011627269.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Amborella trichopoda]
          Length = 1367

 Score = 1716 bits (4443), Expect = 0.0
 Identities = 893/1368 (65%), Positives = 1056/1368 (77%), Gaps = 17/1368 (1%)
 Frame = -3

Query: 4643 EKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLD 4464
            E    TK+P++E+ GPR+IKS++F   SG EI K+AE Q++    Y+ + +K  EHG+LD
Sbjct: 6    EAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAEHGVLD 65

Query: 4463 PRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILF 4284
             R+G + K  +CATC G F  CPGHFGYL+L LPVF+VGYF + + +L+CICK+C RIL 
Sbjct: 66   TRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSCARILL 125

Query: 4283 SDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKCKPSR-CVRCGHNNGTVTKTKSQLAIVE 4107
             ++E K+FL K RNP++++HQKN  +KKV +KCK  R C RCG  NG V K      I  
Sbjct: 126  FEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPTFRISH 185

Query: 4106 SFNKT-VDASMEECLAALSHLK-EKVPVQPHHLLTPFKVLSLFKKMPDEDCELLNLCVRP 3933
              +K   D   +EC  A+S  K           LTP + L+LF++M DEDC+LL L  RP
Sbjct: 186  DRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLYLYDRP 245

Query: 3932 ESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLREAL-QGALPLYNCL 3756
            E LI+T IA+PPA IRP+   GS + NEN LT  L  I+  N  L + + +G LP Y  +
Sbjct: 246  EKLIITHIAVPPAGIRPTYQSGS-RLNENELTTKLWEIVQINHTLIDHVNKGNLPQYY-M 303

Query: 3755 ERWNLLQGLVVEYINSEAPSVL-----DAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRT 3591
            + W LLQ  V  YINSE PS+           GLVQRLKGKQGRFR NL GKRV++TGRT
Sbjct: 304  DTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVDFTGRT 363

Query: 3590 VISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDT 3411
            VISPDPNLKITEVA+P LMAQ+LTY ERVT HNIEKLRQCVRNGP K+PGANFV    DT
Sbjct: 364  VISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFVISGGDT 423

Query: 3410 RVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 3231
             + L+Y  KK  A+ELK+G  VERHLEDG+IVLFNRQPSLHRMSIM HRAR+MPWRTLRF
Sbjct: 424  -LSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTLRF 482

Query: 3230 NESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTS 3051
            NESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQ+NLCTPKNGEILVASTQDFLTS
Sbjct: 483  NESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFLTS 542

Query: 3050 SFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQT 2871
            S+LITRKDTFYDRA FSLMCSY+GDGME+IDLPTPALLKPVELWTGKQLFSV++RP+A  
Sbjct: 543  SYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHAHM 602

Query: 2870 RVFVNLIVKERIHVKDTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKNGLFSVLLRDY 2691
            +V+VNL + E+ + K  ETMC  DG+VY RNS+LI GQLGK TLGNGNK+GLFSVLLRDY
Sbjct: 603  KVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLRDY 662

Query: 2690 NSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGYRRCISYIELY 2511
            NS  AASCMNRLAKLSARWIGNHGFSIGIDDV PG  L +QK+  I  GY  C ++I+ Y
Sbjct: 663  NSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFIDAY 722

Query: 2510 ENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMSQCGSKGSAIN 2331
            +  KL+L+PG +AA+TLE EIT VLN IR  A  VCM+ELHWRNSPLIMSQCGSKGS IN
Sbjct: 723  DKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSPIN 782

Query: 2330 ISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTGLTATEFFFHT 2151
            ISQMIACVGQQSVGGRRAPNGFIDR+LPHFP   KTPAAKGFVANSFYTGLTA EFFFHT
Sbjct: 783  ISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFFHT 842

Query: 2150 MGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFIYGDDGMDPAK 1971
            MGGREGLVDTAVKTA+TGY+SRRL+KSLEDLS +YD TVR+++G ++QF YGDDGMDPAK
Sbjct: 843  MGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDPAK 902

Query: 1970 MEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSPEGGCSSAFKN 1791
            MEG++G+PLNLD+L+ K+ ATCP     SLSPS I  +VN+RLSKHDM+PE GCS AFK 
Sbjct: 903  MEGKSGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKE 962

Query: 1790 LLSDFLHKRVAELRKTKTRLQL-EEADQKDYSSKMGIVAANISGISAKQLQVFMETCISR 1614
             LS+F+ KR+  ++KT+  L L E+   K+  S +  VAANISGIS +QL+VF+ETCISR
Sbjct: 963  ELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLETCISR 1022

Query: 1613 YHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNIS 1434
            YH K+                EPGTQMTLKTFHFAGVASMN+TLGVPRIKEI+ A+K IS
Sbjct: 1023 YHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGASKKIS 1082

Query: 1433 TPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITLDKERIKALQ 1254
            TPIITATL CD+ E+SARIVKG IEKT+LGEVA+ VKI +  +Q  I+ITLD +RI+ALQ
Sbjct: 1083 TPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRIEALQ 1142

Query: 1253 MEASFDSIRHSI-------LNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHTLK 1095
            M     ++  SI       +++ KLK+KP   T      L++L P   R  V + LH L+
Sbjct: 1143 MAIDAKTVADSISENLKAKVSRTKLKVKP---TFTLPDKLKILLPEIGRKEVLYSLHLLQ 1199

Query: 1094 CMLPKVLVKGISTVERAVINCQKGKYNLLVEGTNLLAVMGTPGVDASKTKSNHVMEIWQT 915
             +LPK++VKGI TVERAVIN  KGK NLLVEGTNLLAVMGTPGVD   T SNH++E+  T
Sbjct: 1200 SLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGT 1259

Query: 914  LGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGITRFGMTKMKDSVLM 735
            LGIEAAR SII EIQ TM+SHGMSID RHMMLLAD+MT++G VLGI RFG+TKMK+SVLM
Sbjct: 1260 LGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLM 1319

Query: 734  LASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVRQR 591
            LASFE+TA+ LF+A+  GR D I GVSECIIMG+PMQ+GTGIL V+QR
Sbjct: 1320 LASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQR 1367


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score = 1707 bits (4420), Expect = 0.0
 Identities = 888/1397 (63%), Positives = 1050/1397 (75%), Gaps = 36/1397 (2%)
 Frame = -3

Query: 4628 TKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLDPRLGP 4449
            TK PYIE+ GPR+IKSI+F   S  EI K+AEVQ++    YD  S + +E GLLDPR+GP
Sbjct: 6    TKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKS-RPIEGGLLDPRMGP 64

Query: 4448 ANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILFSDKEH 4269
            ANK   CATCHG+F DCPGH+GYL L LPV+NVGY ++IL+ILKCICK+C RI+  +K  
Sbjct: 65   ANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLC 124

Query: 4268 KEFLVKTRNPKSDVHQKNMIMKKVREKC------KPSRCVRCGHNNGTVTKTKSQLAIVE 4107
            K++L + R+PK D  +K  IMK + +KC      K  +C RCG+ NGTV K  + L I+ 
Sbjct: 125  KDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGIIH 184

Query: 4106 SFNKTVDASMEECLAALSHLKEKVPV--QPHHLLTPFKVLSLFKKMPDEDCELLNLCVRP 3933
              +K  D S+EE  +A+SH KE         ++L P KVLSLFK+M D DCELL L  RP
Sbjct: 185  DRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDRP 244

Query: 3932 ESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLREALQGALPLYNCLE 3753
            E LI+T+IA+PP PIRPSV +   QSNEN +T  LK II  N+ LR+ L      + CL 
Sbjct: 245  EKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFKCLG 304

Query: 3752 RWNLLQGLVVEYINSEAPSV-----LDAKNQGLVQRLKGKQGRFRCNLSGKRVEYTGRTV 3588
             W +LQ  V +YINS+   V     +     G VQR+KGK GRFR NLSGKRVEYTGRTV
Sbjct: 305  GWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGRTV 364

Query: 3587 ISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTLLDDTR 3408
            ISPDPNLKITEVA+P+ MA++LTYPERV++HNIEKLRQCVRNGP K+PGA  V   D + 
Sbjct: 365  ISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDGSA 424

Query: 3407 VHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 3228
              L    +K +A+ELK+GCVV+RHLEDGDIVLFNRQPSLHRMSIM HRARIMPWRTLRFN
Sbjct: 425  RLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 484

Query: 3227 ESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQDFLTSS 3048
            ESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSS
Sbjct: 485  ESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 544

Query: 3047 FLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRPNAQTR 2868
            FLITRKD FYDRAAFSL+CSY+GDGM+ IDLPTPALLKP+ELWTGKQLFSV++RP+A  R
Sbjct: 545  FLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASVR 604

Query: 2867 VFVNLIVKERIHVK-----------DTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKN 2721
            V++NLIVKER + K           + ETMCP DG+VY RNS+LICGQLGK TLGNGNK+
Sbjct: 605  VYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNKD 664

Query: 2720 GLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGY 2541
            GL+SVLLRDYN+  AA+CMNRLAKLSARWIGNHGFSIGIDDVQPG+RLN +K +TI   Y
Sbjct: 665  GLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISGDY 724

Query: 2540 RRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMS 2361
            ++C   I+ +   KL  +PG  AA+TLE  +T +LN IR   G VCMKELHWRNSPLIMS
Sbjct: 725  KKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLIMS 784

Query: 2360 QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTG 2181
            QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDR+LPHF   SKTPAAKGFVANSFY+G
Sbjct: 785  QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFYSG 844

Query: 2180 LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFI 2001
            LTATEFFFHTM GREGLVDTAVKTAETGYMSRRL+K+LEDLS++YD TVR+A+G +VQFI
Sbjct: 845  LTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQFI 904

Query: 2000 YGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSP 1821
            YGDDGMDPA MEG++G PLN D+L  KV ATCP   Q  L    I+ ++ E+L+KHD  P
Sbjct: 905  YGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHD--P 962

Query: 1820 EGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEEADQKDYSSKMGIVAANISGISAKQLQ 1641
             G CS AFK  L  FL  +  EL +   +L    A + +   K+G     ISGIS +QL+
Sbjct: 963  AGVCSEAFKKSLKGFLKSQTNELDRV-MKLVNNCAQKSEILEKVG---HKISGISDRQLE 1018

Query: 1640 VFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1461
            VF+ TCISRY  K                 EPGTQMTLKTFHFAGVASMN+T GVPRIKE
Sbjct: 1019 VFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKE 1078

Query: 1460 IINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKSSQPYISITL 1281
            IINAAK ISTP+ITA L  DD    A+IVKG IEKTVLG+VA+++KIV+ S    + ITL
Sbjct: 1079 IINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVVITL 1138

Query: 1280 DKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADRNRVQFELHT 1101
            D E I   ++    + ++ SIL   K+KLK +HV V     L V+PP ADR+++ FELH+
Sbjct: 1139 DMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPP-ADRSQIHFELHS 1197

Query: 1100 LKCMLPKVLVKGISTVERAVI---NCQKGK---------YNLLVEGTNLLAVMGTPGVDA 957
            LK +LP V+VKGI TVER V+   N +K           + LLVEGT L AVMG  G+D 
Sbjct: 1198 LKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIEGIDG 1257

Query: 956  SKTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGEVLGI 777
             +T SNHVME+ Q LGIEAAR  II EI  TM  HGM+ID RHMMLLADVMT++GEVLGI
Sbjct: 1258 RRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEVLGI 1317

Query: 776  TRFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGILKVR 597
            TRFG+ KM  S+LMLASFE+TA+HLFNA+ NGRDD+I+GV+ECIIMGIPMQ+GTGILKV 
Sbjct: 1318 TRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGILKVI 1377

Query: 596  QRVEQLPELKYGPDPII 546
            QRV+  P L+YGPDP++
Sbjct: 1378 QRVDPPPMLRYGPDPVL 1394


>ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Gossypium raimondii] gi|763752836|gb|KJB20224.1|
            hypothetical protein B456_003G139100 [Gossypium
            raimondii]
          Length = 1398

 Score = 1700 bits (4403), Expect = 0.0
 Identities = 887/1405 (63%), Positives = 1049/1405 (74%), Gaps = 34/1405 (2%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            M Q ++ +  TK PYIE+ GPRRIKSI+F  FS  EI K+AEVQ++    YD  S + +E
Sbjct: 1    MQQRSQDIVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDLQS-RPIE 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
             GLLDPR+GP NK   CATC GSF DCPGH+GYL LVLPV+NVGY ++IL+ILKCICK+C
Sbjct: 60   GGLLDPRMGPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKC------KPSRCVRCGHNNGTVT 4137
             RIL  DK  K++L K R PK++  +K  IMK V +KC      K  +C RCG+ NGTV 
Sbjct: 120  SRILLDDKLAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVK 179

Query: 4136 KTKSQLAIVESFNKTVDASMEECLAALSHLKE-KVPVQPHHLLTPFKVLSLFKKMPDEDC 3960
            K    + +    +K  D S+EE  +A+SH KE K  +    +L P KVLSLFK+M D DC
Sbjct: 180  KAPKMIGVFHDRSKVNDNSLEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDC 239

Query: 3959 ELLNLCVRPESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLREALQG 3780
            ELL L  RPE  I+T+IA+PP  IRPSV V   QSNEN +T  LK II  NS LR+ L  
Sbjct: 240  ELLYLSDRPEKFIITNIAVPPTAIRPSVPVDGSQSNENDITERLKRIIQANSSLRQQLVD 299

Query: 3779 ALPLYNCLERWNLLQGLVVEYINSEAPSVLDAKN-----QGLVQRLKGKQGRFRCNLSGK 3615
            +   ++CL  W+LLQ  V +YINS+   V           G +QRLKGKQGRFR NLSGK
Sbjct: 300  SNAAFHCLNGWDLLQVDVAQYINSDVRGVPTEMQPARPLSGFLQRLKGKQGRFRGNLSGK 359

Query: 3614 RVEYTGRTVISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGAN 3435
            RVE+TGRTVISPDPNLKITEVA+P+ MA++L+YPERV+ HNIEKLRQCVRNGP K+PGA 
Sbjct: 360  RVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSSHNIEKLRQCVRNGPSKYPGAV 419

Query: 3434 FVTLLDDTRVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARI 3255
             V   D +   L    +K +A+ELK+GC+V+RHLEDGDIVLFNRQPSLHRMSIM HRARI
Sbjct: 420  KVRYPDGSARLLIGDYRKRLADELKFGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARI 479

Query: 3254 MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVA 3075
            MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQNNLCTPKNGE+LVA
Sbjct: 480  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEVLVA 539

Query: 3074 STQDFLTSSFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSV 2895
            STQDFLTSSFLITR+DTFYDRA FSL+CSY+GD M+ IDLPTP LLKPVELWTGKQLF+V
Sbjct: 540  STQDFLTSSFLITRRDTFYDRATFSLICSYMGDAMDLIDLPTPTLLKPVELWTGKQLFNV 599

Query: 2894 IVRPNAQTRVFVNLIVKERIHVK-----------DTETMCPRDGYVYFRNSDLICGQLGK 2748
            ++RP+A  RV++NL VKER + +           + ETMCP DG+VY RNS+L+CGQLGK
Sbjct: 600  LLRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRNSELLCGQLGK 659

Query: 2747 VTLGNGNKNGLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQ 2568
             TLGNGNK+GL+S+LLRDYN+  AA+CMNRLAK+SARWIGNHGFSIGIDDVQPG+RLN  
Sbjct: 660  ATLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDDVQPGKRLNDA 719

Query: 2567 KKMTIDDGYRRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELH 2388
            K +T+   Y++C   I+++   KL L+PG  AA+TLE  ITEVLN+IR   G VCM+ELH
Sbjct: 720  KGVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDETGKVCMRELH 779

Query: 2387 WRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKG 2208
            WRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDR+LPHF   SKTPAAKG
Sbjct: 780  WRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKG 839

Query: 2207 FVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRS 2028
            FVANSFY+GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRL+K+LEDLS++YD T R+
Sbjct: 840  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTCRN 899

Query: 2027 ANGAVVQFIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNE 1848
            A+G +VQFIYGDDGMDPA MEG++G PLN D+L  KV ATCP   Q  L    I  ++ E
Sbjct: 900  ASGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCPPVDQKYLPADAIPQMLEE 959

Query: 1847 RLSKHDMSPEGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEEADQKDYSSKMGIVAANI 1668
            ++ KHD  P+G CS AFK  L  FL  +  EL++    +QL  ++    S  +  V+  I
Sbjct: 960  QVVKHD--PDGVCSEAFKKSLKGFLEGQKNELKRV---MQL-VSNSAQKSEILEDVSHKI 1013

Query: 1667 SGISAKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNV 1488
             GI+ +QL+VF+  CI RY  K                 EPGTQMTLKTFHFAGVASMN+
Sbjct: 1014 CGITDRQLEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 1073

Query: 1487 TLGVPRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKS 1308
            T GVPRIKEIINAAK ISTPIITA L  D     AR+VKG IEKTVLG+VA+++KIV+ S
Sbjct: 1074 TQGVPRIKEIINAAKKISTPIITAELEFDSNVNVARMVKGRIEKTVLGQVAKSIKIVMTS 1133

Query: 1307 SQPYISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADR 1128
                + I+LD ERI+  Q+    + ++ SIL   KLKLK +HV V     L V+PP ADR
Sbjct: 1134 RLASVVISLDMERIQDAQLHIDANVVKESILQTPKLKLKEQHVKVLDVKKLEVVPP-ADR 1192

Query: 1127 NRVQFELHTLKCMLPKVLVKGISTVERAVI------NCQKGK-----YNLLVEGTNLLAV 981
            +R+ FELH+LK +LP V+VKGI TVER VI      N  + K     Y L VEG  L  V
Sbjct: 1193 SRIHFELHSLKNLLPLVVVKGIKTVERVVIAEKKKDNKSQNKEAKKLYQLFVEGMGLQTV 1252

Query: 980  MGTPGVDASKTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMT 801
            MG  G+D  KT SNHVME+ Q LGIEAAR  II EI  TM SHGMSID RHMMLL DVMT
Sbjct: 1253 MGVEGIDGRKTMSNHVMEMLQILGIEAARSCIINEIAATMASHGMSIDIRHMMLLGDVMT 1312

Query: 800  YKGEVLGITRFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQL 621
            ++GEVLGITRFG+ KM  S+LMLASFEKT +HLFNAS NGRDD+I+GV+ECIIMGIPMQL
Sbjct: 1313 FRGEVLGITRFGIQKMDKSILMLASFEKTGDHLFNASVNGRDDKIEGVTECIIMGIPMQL 1372

Query: 620  GTGILKVRQRVEQLPELKYGPDPII 546
            GTGILKV QRV+ LP L+YG DP++
Sbjct: 1373 GTGILKVMQRVDPLPLLQYGADPVL 1397


>ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Gossypium raimondii]
          Length = 1395

 Score = 1692 bits (4381), Expect = 0.0
 Identities = 885/1405 (62%), Positives = 1047/1405 (74%), Gaps = 34/1405 (2%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            M Q ++ +  TK PYIE+ GPRRIKSI+F  FS  EI K+AEVQ++    YD  S + +E
Sbjct: 1    MQQRSQDIVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDLQS-RPIE 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
             GLLDPR+GP NK   CATC GSF DCPGH+GYL LVLPV+NVGY ++IL+ILKCICK+C
Sbjct: 60   GGLLDPRMGPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKC------KPSRCVRCGHNNGTVT 4137
             RIL  DK  K++L K R PK++  +K  IMK V +KC      K  +C RCG+ NGTV 
Sbjct: 120  SRILLDDKLAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVK 179

Query: 4136 KTKSQLAIVESFNKTVDASMEECLAALSHLKE-KVPVQPHHLLTPFKVLSLFKKMPDEDC 3960
            K    + +    +K  D S+EE  +A+SH KE K  +    +L P KVLSLFK+M D DC
Sbjct: 180  KAPKMIGVFHDRSKVNDNSLEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDC 239

Query: 3959 ELLNLCVRPESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLREALQG 3780
            ELL L  RPE  I+T+IA+PP  IRPSV V     NEN +T  LK II  NS LR+ L  
Sbjct: 240  ELLYLSDRPEKFIITNIAVPPTAIRPSVPV---DGNENDITERLKRIIQANSSLRQQLVD 296

Query: 3779 ALPLYNCLERWNLLQGLVVEYINSEAPSVLDAKN-----QGLVQRLKGKQGRFRCNLSGK 3615
            +   ++CL  W+LLQ  V +YINS+   V           G +QRLKGKQGRFR NLSGK
Sbjct: 297  SNAAFHCLNGWDLLQVDVAQYINSDVRGVPTEMQPARPLSGFLQRLKGKQGRFRGNLSGK 356

Query: 3614 RVEYTGRTVISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGAN 3435
            RVE+TGRTVISPDPNLKITEVA+P+ MA++L+YPERV+ HNIEKLRQCVRNGP K+PGA 
Sbjct: 357  RVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSSHNIEKLRQCVRNGPSKYPGAV 416

Query: 3434 FVTLLDDTRVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARI 3255
             V   D +   L    +K +A+ELK+GC+V+RHLEDGDIVLFNRQPSLHRMSIM HRARI
Sbjct: 417  KVRYPDGSARLLIGDYRKRLADELKFGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARI 476

Query: 3254 MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVA 3075
            MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQNNLCTPKNGE+LVA
Sbjct: 477  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEVLVA 536

Query: 3074 STQDFLTSSFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSV 2895
            STQDFLTSSFLITR+DTFYDRA FSL+CSY+GD M+ IDLPTP LLKPVELWTGKQLF+V
Sbjct: 537  STQDFLTSSFLITRRDTFYDRATFSLICSYMGDAMDLIDLPTPTLLKPVELWTGKQLFNV 596

Query: 2894 IVRPNAQTRVFVNLIVKERIHVK-----------DTETMCPRDGYVYFRNSDLICGQLGK 2748
            ++RP+A  RV++NL VKER + +           + ETMCP DG+VY RNS+L+CGQLGK
Sbjct: 597  LLRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRNSELLCGQLGK 656

Query: 2747 VTLGNGNKNGLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQ 2568
             TLGNGNK+GL+S+LLRDYN+  AA+CMNRLAK+SARWIGNHGFSIGIDDVQPG+RLN  
Sbjct: 657  ATLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDDVQPGKRLNDA 716

Query: 2567 KKMTIDDGYRRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELH 2388
            K +T+   Y++C   I+++   KL L+PG  AA+TLE  ITEVLN+IR   G VCM+ELH
Sbjct: 717  KGVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDETGKVCMRELH 776

Query: 2387 WRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKG 2208
            WRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDR+LPHF   SKTPAAKG
Sbjct: 777  WRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKG 836

Query: 2207 FVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRS 2028
            FVANSFY+GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRL+K+LEDLS++YD T R+
Sbjct: 837  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTCRN 896

Query: 2027 ANGAVVQFIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNE 1848
            A+G +VQFIYGDDGMDPA MEG++G PLN D+L  KV ATCP   Q  L    I  ++ E
Sbjct: 897  ASGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCPPVDQKYLPADAIPQMLEE 956

Query: 1847 RLSKHDMSPEGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEEADQKDYSSKMGIVAANI 1668
            ++ KHD  P+G CS AFK  L  FL  +  EL++    +QL  ++    S  +  V+  I
Sbjct: 957  QVVKHD--PDGVCSEAFKKSLKGFLEGQKNELKRV---MQL-VSNSAQKSEILEDVSHKI 1010

Query: 1667 SGISAKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNV 1488
             GI+ +QL+VF+  CI RY  K                 EPGTQMTLKTFHFAGVASMN+
Sbjct: 1011 CGITDRQLEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 1070

Query: 1487 TLGVPRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLKS 1308
            T GVPRIKEIINAAK ISTPIITA L  D     AR+VKG IEKTVLG+VA+++KIV+ S
Sbjct: 1071 TQGVPRIKEIINAAKKISTPIITAELEFDSNVNVARMVKGRIEKTVLGQVAKSIKIVMTS 1130

Query: 1307 SQPYISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVADR 1128
                + I+LD ERI+  Q+    + ++ SIL   KLKLK +HV V     L V+PP ADR
Sbjct: 1131 RLASVVISLDMERIQDAQLHIDANVVKESILQTPKLKLKEQHVKVLDVKKLEVVPP-ADR 1189

Query: 1127 NRVQFELHTLKCMLPKVLVKGISTVERAVI------NCQKGK-----YNLLVEGTNLLAV 981
            +R+ FELH+LK +LP V+VKGI TVER VI      N  + K     Y L VEG  L  V
Sbjct: 1190 SRIHFELHSLKNLLPLVVVKGIKTVERVVIAEKKKDNKSQNKEAKKLYQLFVEGMGLQTV 1249

Query: 980  MGTPGVDASKTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMT 801
            MG  G+D  KT SNHVME+ Q LGIEAAR  II EI  TM SHGMSID RHMMLL DVMT
Sbjct: 1250 MGVEGIDGRKTMSNHVMEMLQILGIEAARSCIINEIAATMASHGMSIDIRHMMLLGDVMT 1309

Query: 800  YKGEVLGITRFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQL 621
            ++GEVLGITRFG+ KM  S+LMLASFEKT +HLFNAS NGRDD+I+GV+ECIIMGIPMQL
Sbjct: 1310 FRGEVLGITRFGIQKMDKSILMLASFEKTGDHLFNASVNGRDDKIEGVTECIIMGIPMQL 1369

Query: 620  GTGILKVRQRVEQLPELKYGPDPII 546
            GTGILKV QRV+ LP L+YG DP++
Sbjct: 1370 GTGILKVMQRVDPLPLLQYGADPVL 1394


>ref|XP_011005565.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Populus
            euphratica]
          Length = 1410

 Score = 1682 bits (4356), Expect = 0.0
 Identities = 871/1411 (61%), Positives = 1056/1411 (74%), Gaps = 40/1411 (2%)
 Frame = -3

Query: 4658 MAQGAEKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVE 4479
            M Q A+ +  TK+PY+E+ GPRRIKSI+F   SG +I K++E Q+ ++G Y  ++ K + 
Sbjct: 1    MQQRAQDIIYTKQPYVEDVGPRRIKSIQFSTMSGSDILKASECQV-HLGQYYDANKKAIV 59

Query: 4478 HGLLDPRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKAC 4299
             GLLD R+G  NK   C TC GSFTDCPGHFGYL LVLPV+NVGY ++IL+ILKCICK+C
Sbjct: 60   GGLLDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSC 119

Query: 4298 GRILFSDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKC------KPSRCVRCGHNNGTVT 4137
             R+L  +K  K +L + RNP+++  +KN +MK++ +KC      K  +C+RCG+ NG V 
Sbjct: 120  SRVLIDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVK 179

Query: 4136 KTKSQLAIVESFNKTVDASMEECLAALSHLKE-KVPVQ-PHHLLTPFKVLSLFKKMPDED 3963
            K  S + I+   +K  D  +EEC +A+ H +E + P+    ++L P +VLSLF+++ +ED
Sbjct: 180  KAGSVVGIIHDRSKLSDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRIVEED 239

Query: 3962 CELLNLCVRPESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLR-EAL 3786
            CELL L  RPE LI+T IA+PP  IRPSVF    QSNEN +T  LK II  N+ LR E L
Sbjct: 240  CELLYLQGRPEKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELL 299

Query: 3785 QGALPLYNCLERWNLLQGLVVEYINSEAPSVLDAKN----QGLVQRLKGKQGRFRCNLSG 3618
            +G       L  W+ LQ +V  YINS+    LD +      G VQRL GKQGRFR NL+G
Sbjct: 300  EGRRTGIKYLIGWDELQAVVTLYINSDVRIPLDMQVGRPLSGFVQRLTGKQGRFRQNLAG 359

Query: 3617 KRVEYTGRTVISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGA 3438
            KRVE+TGRTVISPDPNLKITEVA+P+ MA++LTYPERVTHHNIEKLR CV NG +K+PGA
Sbjct: 360  KRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRHCVNNGSYKYPGA 419

Query: 3437 NFVTLLDDTRVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRAR 3258
              VT  D +   L    +K +A ELK GC+V RHLEDGD+VLFNRQPSLHRMSIM HRAR
Sbjct: 420  RMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRAR 479

Query: 3257 IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILV 3078
            IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAF LMGVQNNLCTPKNGEILV
Sbjct: 480  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILV 539

Query: 3077 ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFS 2898
            ASTQDFLTSSFLITRKDTFYDRAAFSLMCSY+ DGM+ +DLPTP++LKP+ELWTGKQLFS
Sbjct: 540  ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFS 599

Query: 2897 VIVRPNAQTRVFVNLIVKERI-------HVKDTETMCPRDGYVYFRNSDLICGQLGKVTL 2739
            V++RP+A  RV+VNLIVKE+        H K+ ETMCP DGYVYFRNS+LI GQLGK TL
Sbjct: 600  VLLRPHANVRVYVNLIVKEKNYSKPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATL 659

Query: 2738 GNGNKNGLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKM 2559
            GNGNK+GL+S+LLRDYN+  AA+CMNRLAKLSARWIGNHGFSIGIDDVQPG++L  +K  
Sbjct: 660  GNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGK 719

Query: 2558 TIDDGYRRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRN 2379
            TI +GY+ C   I  Y   +L L+PG  A +TLE EITE LN++R+ AGDVCMKELHWRN
Sbjct: 720  TISNGYQHCNKLIADYNGGRLTLKPGCDATQTLETEITERLNKLREEAGDVCMKELHWRN 779

Query: 2378 SPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVA 2199
            SPLIMSQCGSKGS INISQMIACVGQQSVGG RAP+GFIDR+LPHFP KSKTPAAKGFVA
Sbjct: 780  SPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVA 839

Query: 2198 NSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANG 2019
            NSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYM+RRL K LEDL + YD TV+ A G
Sbjct: 840  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGG 899

Query: 2018 AVVQFIYGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLS 1839
             +VQF+YGDDG+DPA MEG+ G+PLN D+L+ KV ATC  +  + +SPS I ++V   L 
Sbjct: 900  GIVQFLYGDDGLDPAMMEGKAGVPLNFDRLFMKVKATCGAEEDEYISPSDISNIVQSLLL 959

Query: 1838 KHDMSPEGGCSSAFKNLLSDFL---HKRVAELRKTKTRLQLEEADQ-KDYSSKMGI---- 1683
            KH+ + +G CS +F+  LS FL    KR+  L K     ++E  +  K+     GI    
Sbjct: 960  KHNGTLDGICSESFRKSLSSFLGDQAKRLECLMKLVDGFEVENFENIKNVEGLTGISKNT 1019

Query: 1682 --VAANISGISAKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFA 1509
              +A  +SGI+ KQL+VF++TC+ RY  K+                EPGTQMTLKTFHFA
Sbjct: 1020 EKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFA 1079

Query: 1508 GVASMNVTLGVPRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEA 1329
            GVASMN+T GVPRIKEIIN AK ISTPIIT  L  +    +ARI+KG I+KTVLG+VA++
Sbjct: 1080 GVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKS 1139

Query: 1328 VKIVLKSSQPYISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRV 1149
            +KIV+ S    + +TLD + I+  Q+    + +R  IL   K+K K + + V   G L V
Sbjct: 1140 IKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEV 1199

Query: 1148 LPPVADRNRVQFELHTLKCMLPKVLVKGISTVERAVI---------NCQKG-KYNLLVEG 999
             P   DRN++ FELH+LK MLP V+VKGI TVER VI         N Q G KYN+ VEG
Sbjct: 1200 FPG-GDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEG 1258

Query: 998  TNLLAVMGTPGVDASKTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMML 819
            T L AVMGT GVD  KTKSNH++E+ +TLGIEAAR  II EI+ TM SHGMSID RHMML
Sbjct: 1259 TGLQAVMGTDGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMML 1318

Query: 818  LADVMTYKGEVLGITRFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIM 639
            LADVMT +G VLGITRFG+ KM  SVLMLASFEKT++HLFNAS  G+DD+I+GVSECIIM
Sbjct: 1319 LADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIM 1378

Query: 638  GIPMQLGTGILKVRQRVEQLPELKYGPDPII 546
            GIP+ +GTG+LK++QRV+ LP L YG DPII
Sbjct: 1379 GIPVAIGTGVLKIQQRVDPLPMLDYGLDPII 1409


>ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1 [Cucumis melo]
          Length = 1400

 Score = 1679 bits (4349), Expect = 0.0
 Identities = 871/1401 (62%), Positives = 1046/1401 (74%), Gaps = 35/1401 (2%)
 Frame = -3

Query: 4643 EKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLD 4464
            E L  TK+PYIE+ GPR+IKS++F  FSG EI K AEVQ++  GLY  ++ K ++ GLLD
Sbjct: 7    EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYK-GLYYDTTRKPIDGGLLD 65

Query: 4463 PRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILF 4284
            PR+GPANK   C+TCH +F DCPGH+GY+ L LPVFNVGYF +IL ILKCICK+C RIL 
Sbjct: 66   PRMGPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSCSRILL 125

Query: 4283 SDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKC-------KPSRCVRCGHNNGTVTKTKS 4125
             +K +K+FL K RNPK +  +K  ++KK+ +KC       K ++C RCG+ NG+V K  S
Sbjct: 126  EEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCSTLTTGNKSTKCSRCGYLNGSVKKAVS 185

Query: 4124 QLAIVESFNKTVDASM-EECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLN 3948
             L I+    ++ DA +  E L A  ++   +       L PF+VL LF++M DEDCELL 
Sbjct: 186  MLGILHYRARSKDAGVVSEDLRAPYNVSNDI-------LNPFRVLCLFQRMSDEDCELLF 238

Query: 3947 LCVRPESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLREALQGALPL 3768
            L  RPE LI+T++ +PP  IRPSV +   QSNEN +T  LK II  N+ + + L  +   
Sbjct: 239  LSDRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ 298

Query: 3767 YNCLERWNLLQGLVVEYINSEAPSV-----LDAKNQGLVQRLKGKQGRFRCNLSGKRVEY 3603
              CLE W++LQ  V + INS+   +     +     G VQRLKGKQGRFR NL GKRVE+
Sbjct: 299  AKCLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEF 358

Query: 3602 TGRTVISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTL 3423
            TGRTVISPDPNLKITEVAVP+ MA++LTYPERVT HNIEKLRQCV NGP K+PGA  +  
Sbjct: 359  TGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRH 418

Query: 3422 LDDTRVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 3243
            LD +   L    +K +A+ELKYG +VERHLEDGD+VLFNRQPSLHRMSIM HR R+MPWR
Sbjct: 419  LDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWR 478

Query: 3242 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQD 3063
            TLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQD
Sbjct: 479  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQD 538

Query: 3062 FLTSSFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRP 2883
            FLTSSFLITRKDTFYDRAAFSLMCSY+GDGM+ IDLPTPAL+KP+ELWTGKQLFSV+VRP
Sbjct: 539  FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLIDLPTPALIKPIELWTGKQLFSVLVRP 598

Query: 2882 NAQTRVFVNLIVKERIHVK------DTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKN 2721
            +A  +V++NL VKE+ + K      + ETMCP DG+VYFRNS+LI GQ+GK TLGNGNK+
Sbjct: 599  HASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKD 658

Query: 2720 GLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGY 2541
            GL+SVLLRDY +  AA CMNRLAKLSARWIGNHGFSIGIDDVQPG++L  +K+ TI +GY
Sbjct: 659  GLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVXKKQTTILEGY 718

Query: 2540 RRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMS 2361
            R C   I L+    L    G  AA++LE +IT++LN IR+   +VCM+ LHWRNSPLIMS
Sbjct: 719  RDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMS 778

Query: 2360 QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTG 2181
            QCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDR+LPHF  K+KTPAAKGFVANSFY+G
Sbjct: 779  QCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSG 838

Query: 2180 LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFI 2001
            LTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K+LEDLS+YYD +VR+A G +VQF 
Sbjct: 839  LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIYYDSSVRNAGGCIVQFC 898

Query: 2000 YGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSP 1821
            YGDDGMDPA+MEG++G PLN ++L+ K  ATCP      LSPS   + V +RLSK D SP
Sbjct: 899  YGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASP 958

Query: 1820 EGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEE---ADQKDYSSK-------MGIVAAN 1671
            E GCS AF   L  FL+K +   +K+ + L  +     D+   SS           V  N
Sbjct: 959  ECGCSPAFIGSLKIFLNKYIEAQKKSWSTLLADNETAVDKSIISSSDNDNIVIRNNVVQN 1018

Query: 1670 ISGISAKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMN 1491
            I+G++ +QLQVF++TC+SRYH KK                EPGTQMTLKTFHFAGVASMN
Sbjct: 1019 IAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1078

Query: 1490 VTLGVPRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLK 1311
            VTLGVPRIKEIIN AK ISTPI+TA L  DD    AR+VK  IEKT LG++A+ ++IV+ 
Sbjct: 1079 VTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMS 1138

Query: 1310 SSQPYISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVAD 1131
            S    I I LD E+I+  ++    + ++ +IL   KLKLK EH+ V     LRVLP  AD
Sbjct: 1139 SRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDAD 1198

Query: 1130 RNRVQFELHTLKCMLPKVLVKGISTVERAVINCQKG------KYNLLVEGTNLLAVMGTP 969
            RN++ F LH LK MLP V+VKGI TV RAVI  +K       K++LLVEGT L AVMGT 
Sbjct: 1199 RNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTE 1258

Query: 968  GVDASKTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGE 789
            GVD   TKSNH++E+ Q LGIEAAR  II EI+ TM SHGMSID RHMMLL D+MT++GE
Sbjct: 1259 GVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGE 1318

Query: 788  VLGITRFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGI 609
            VLGITRFG+ KM  SVLMLASFEKTA+HLFNAS NGRDD+I+GVSEC+IMGIPM LGTG+
Sbjct: 1319 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGM 1378

Query: 608  LKVRQRVEQLPELKYGPDPII 546
            LKVRQRV    +L YGP  I+
Sbjct: 1379 LKVRQRVSVPRQLPYGPPAIL 1399


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis
            sativus]
          Length = 1400

 Score = 1679 bits (4348), Expect = 0.0
 Identities = 872/1401 (62%), Positives = 1045/1401 (74%), Gaps = 35/1401 (2%)
 Frame = -3

Query: 4643 EKLRCTKEPYIENFGPRRIKSIRFDAFSGEEIKKSAEVQIWNVGLYDASSVKTVEHGLLD 4464
            E L  TK+PYIE+ GPR+IKS++F  FSG EI K AEVQ++  GLY  ++ K ++ GLLD
Sbjct: 7    EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYK-GLYYDTTRKPIDGGLLD 65

Query: 4463 PRLGPANKKTACATCHGSFTDCPGHFGYLRLVLPVFNVGYFNSILNILKCICKACGRILF 4284
            PR+GPANK   CATCH +F DCPGH+GY+ L LPVFNVGYF +IL ILKCICK+C RIL 
Sbjct: 66   PRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILL 125

Query: 4283 SDKEHKEFLVKTRNPKSDVHQKNMIMKKVREKC-------KPSRCVRCGHNNGTVTKTKS 4125
             +K  K+FL K RNPK +  +K  ++KK+ +KC       K +RC RCG+ NG+V K  S
Sbjct: 126  EEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVS 185

Query: 4124 QLAIVESFNKTVDASM-EECLAALSHLKEKVPVQPHHLLTPFKVLSLFKKMPDEDCELLN 3948
             L I+    ++ DA +  E L A  ++   +       L PF+VL LF++M DEDCELL 
Sbjct: 186  MLGILHYRARSKDAGVVSEDLRAPYNVSNDI-------LNPFRVLCLFQRMSDEDCELLF 238

Query: 3947 LCVRPESLIVTDIAIPPAPIRPSVFVGSGQSNENGLTVILKNIINTNSHLREALQGALPL 3768
            L  RPE LI+T++ +PP  IRPSV +   QSNEN +T  LK II  N+ + + L  +   
Sbjct: 239  LSNRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ 298

Query: 3767 YNCLERWNLLQGLVVEYINSEAPSV-----LDAKNQGLVQRLKGKQGRFRCNLSGKRVEY 3603
              CLE W++LQ  V + INS+   +     +     G VQRLKGKQGRFR NL GKRVE+
Sbjct: 299  AKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEF 358

Query: 3602 TGRTVISPDPNLKITEVAVPVLMAQVLTYPERVTHHNIEKLRQCVRNGPFKHPGANFVTL 3423
            TGRTVISPDPNLKITEVAVP+ MA++LTYPERVT HNIEKLRQCV NGP K+PGA  +  
Sbjct: 359  TGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRH 418

Query: 3422 LDDTRVHLKYVEKKNVANELKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 3243
            LD +   L    +K +A+ELKYG +VERHLEDGD+VLFNRQPSLHRMSIM HR R+MPWR
Sbjct: 419  LDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWR 478

Query: 3242 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFTLMGVQNNLCTPKNGEILVASTQD 3063
            TLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMGVQNNLCTPKNGEILVASTQD
Sbjct: 479  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQD 538

Query: 3062 FLTSSFLITRKDTFYDRAAFSLMCSYIGDGMESIDLPTPALLKPVELWTGKQLFSVIVRP 2883
            FLTSSFLITRKDTFYDRAAFSLMCSY+GDGM+ +DLPTPAL+KP+ELWTGKQLFSV+VRP
Sbjct: 539  FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRP 598

Query: 2882 NAQTRVFVNLIVKERIHVK------DTETMCPRDGYVYFRNSDLICGQLGKVTLGNGNKN 2721
            +A  +V++NL VKE+ + K      + ETMCP DG+VYFRNS+LI GQ+GK TLGNGNK+
Sbjct: 599  HASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKD 658

Query: 2720 GLFSVLLRDYNSDVAASCMNRLAKLSARWIGNHGFSIGIDDVQPGERLNQQKKMTIDDGY 2541
            GL+SVLLRDY +  AA CMNRLAKLSARWIGNHGFSIGIDDVQPG++L ++K+ TI +GY
Sbjct: 659  GLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGY 718

Query: 2540 RRCISYIELYENRKLNLRPGASAAETLEVEITEVLNEIRKTAGDVCMKELHWRNSPLIMS 2361
            R C   I L+    L    G  AA++LE +IT++LN IR+   +VCM+ LHWRNSPLIMS
Sbjct: 719  RDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMS 778

Query: 2360 QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHFPLKSKTPAAKGFVANSFYTG 2181
            QCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDR+LPHF  K+KTPAAKGFVANSFY+G
Sbjct: 779  QCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSG 838

Query: 2180 LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSLYYDQTVRSANGAVVQFI 2001
            LTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K+LEDLS++YD +VR+A G +VQF 
Sbjct: 839  LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFC 898

Query: 2000 YGDDGMDPAKMEGENGIPLNLDQLYKKVLATCPRKPQDSLSPSRIIDLVNERLSKHDMSP 1821
            YGDDGMDPA+MEG++G PLN ++L+ K  ATCP      LSPS   + V +RLSK D SP
Sbjct: 899  YGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASP 958

Query: 1820 EGGCSSAFKNLLSDFLHKRVAELRKTKTRLQLEE---ADQKDYSSK-------MGIVAAN 1671
            E GCS AF   L  FL+K V   +K+   L  +     D+   SS           V  N
Sbjct: 959  ECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIVIRNKVVQN 1018

Query: 1670 ISGISAKQLQVFMETCISRYHKKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMN 1491
            I+G++ +QLQVF++TC+SRYH KK                EPGTQMTLKTFHFAGVASMN
Sbjct: 1019 IAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1078

Query: 1490 VTLGVPRIKEIINAAKNISTPIITATLFCDDKEESARIVKGEIEKTVLGEVAEAVKIVLK 1311
            VTLGVPRIKEIIN AK ISTPI+TA L  DD    AR+VK  IEKT LG++A+ ++IV+ 
Sbjct: 1079 VTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMS 1138

Query: 1310 SSQPYISITLDKERIKALQMEASFDSIRHSILNQRKLKLKPEHVTVRSKGSLRVLPPVAD 1131
            S    I I LD E+I+  ++    + ++ +IL   KLKLK EH+ V     LRVLP  AD
Sbjct: 1139 SRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDAD 1198

Query: 1130 RNRVQFELHTLKCMLPKVLVKGISTVERAVINCQKG------KYNLLVEGTNLLAVMGTP 969
            RN++ F LH LK MLP V+VKGI TV RAVI  +K       K++LLVEGT L AVMGT 
Sbjct: 1199 RNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTE 1258

Query: 968  GVDASKTKSNHVMEIWQTLGIEAARLSIITEIQDTMRSHGMSIDTRHMMLLADVMTYKGE 789
            GVD   TKSNH++E+ Q LGIEAAR  II EI+ TM SHGMSID RHMMLL D+MT++GE
Sbjct: 1259 GVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGE 1318

Query: 788  VLGITRFGMTKMKDSVLMLASFEKTAEHLFNASFNGRDDQIQGVSECIIMGIPMQLGTGI 609
            VLGITRFG+ KM  SVLMLASFEKTA+HLFNAS NGRDD+I+GVSEC+IMGIPM LGTG+
Sbjct: 1319 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGM 1378

Query: 608  LKVRQRVEQLPELKYGPDPII 546
            LKVRQRV    +L YGP  I+
Sbjct: 1379 LKVRQRVSVPQQLPYGPPAIL 1399