BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00002044
         (3118 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]             304   3e-79
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]             303   4e-79
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]             301   3e-78
ref|XP_009344908.1| PREDICTED: uncharacterized protein LOC103936...   289   1e-74
gb|AIK35195.1| LINE-type retrotransposon LIb DNA [Ipomoea batatas]    270   3e-73
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...   258   3e-65
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...   246   8e-62
ref|XP_010674616.1| PREDICTED: uncharacterized protein LOC104890...   236   7e-59
ref|XP_009119466.1| PREDICTED: uncharacterized protein LOC103844...   236   7e-59
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   235   2e-58
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...   224   5e-58
gb|AID60103.1| hypothetical protein [Brassica napus]                  227   4e-56
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A...   224   3e-55
ref|XP_010670869.1| PREDICTED: uncharacterized protein LOC104887...   219   1e-53
ref|XP_009101981.1| PREDICTED: putative ribonuclease H protein A...   218   2e-53
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   215   2e-52
ref|XP_008221358.1| PREDICTED: putative ribonuclease H protein A...   215   2e-52
ref|XP_009124282.1| PREDICTED: putative ribonuclease H protein A...   212   2e-51
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   209   1e-50
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]              204   4e-49

>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  304 bits (778), Expect = 3e-79
 Identities = 173/549 (31%), Positives = 274/549 (49%), Gaps = 2/549 (0%)
 Frame = -2

Query: 1809 CDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVL 1630
            C+EIDK  ++F+W      R LH ++W +IC PR+ GGLGLR  R  N AF  KMAWQ+ 
Sbjct: 819  CNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIF 878

Query: 1629 HCPNKPWVKILVDKYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSL 1450
               +K WVK+L +KY +N    + + +   S  W+ + KG  ++   +   +GNGR+ + 
Sbjct: 879  SNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINF 938

Query: 1449 WYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMSI 1270
            W D W+GD  L      I      + KVE +I S  +WD   + +I+  +++  +    I
Sbjct: 939  WNDWWVGDGPLASNTDCINQPHMTDIKVEDLITSQRRWDTGALHNILPTNMIDMVRATPI 998

Query: 1269 PYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWLVI 1090
              N++ ED   W   T+GM +  S Y +    HD D     WI +    +KIK F+W ++
Sbjct: 999  AINSEQEDFLSWPHSTTGMVTVSSAY-SLIAGHDGDDRSHDWIWRATCTEKIKLFMWKIV 1057

Query: 1089 HGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTERGTDN 910
               L      ++RG+ ++  C VC +EDE  DH+FR C  A+  W +    P T + +++
Sbjct: 1058 KNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSA-VPPLTFQTSNH 1116

Query: 909  LHL--WIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQIFLY 736
            LH+  W+K     ++     +    +F   +W +WK RN+ V     T+  DI  + F+ 
Sbjct: 1117 LHMHSWMKAACSSQQKDGYSTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFME 1176

Query: 735  SKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGGIFRNEDDN 556
            S + + +       +   +   + W     G  KLN+DG  K  S  A  GG+ RNE+  
Sbjct: 1177 SSEARCLLAKRTGLQTAFQ-TWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGL 1235

Query: 555  WIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKDNTTLHPL 376
            W+ GY   +GT ++ L E+  ++EGL +A       L+ E DS   +Q++ KD       
Sbjct: 1236 WVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDA 1295

Query: 375  SNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPSGMCNILYG 196
            S  + DC+ L    + +   H+ RE NQ ADFLAN+G + +    ILER P  +   L  
Sbjct: 1296 SILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQSSSWGTTILERPPDDLRIFLQR 1355

Query: 195  DQVGTTYPR 169
            D +G    R
Sbjct: 1356 DAIGLASSR 1364


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  303 bits (777), Expect = 4e-79
 Identities = 173/549 (31%), Positives = 274/549 (49%), Gaps = 2/549 (0%)
 Frame = -2

Query: 1809 CDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVL 1630
            C+EIDK  ++F+W      R LH ++W +IC PR+ GGLGLR  R  N AF  KMAWQ+ 
Sbjct: 819  CNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIF 878

Query: 1629 HCPNKPWVKILVDKYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSL 1450
               +K WVK+L +KY +N    + + +   S  W+ + KG  ++   +   +GNGR+ + 
Sbjct: 879  SNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINF 938

Query: 1449 WYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMSI 1270
            W D W+GD  L      I      + KVE +I S  +WD   + +I+  +++  +    I
Sbjct: 939  WNDWWVGDGPLASNTDCINQPHMTDIKVEDLITSQRRWDTGALHNILPTNMIDMVRATPI 998

Query: 1269 PYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWLVI 1090
              N++ ED   W   T+GM +  S Y +    HD D     WI +    +KIK F+W ++
Sbjct: 999  AINSEQEDFLSWPHSTTGMVTVSSAY-SLIAGHDGDDRSHDWIWRATCTEKIKLFMWKIV 1057

Query: 1089 HGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTERGTDN 910
               L      ++RG+ ++  C VC +EDE  DH+FR C  A+  W +    P T + +++
Sbjct: 1058 KNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSA-VPPLTFQTSNH 1116

Query: 909  LHL--WIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQIFLY 736
            LH+  W+K     ++     +    +F   +W +WK RN+ V     T+  DI  + F+ 
Sbjct: 1117 LHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFME 1176

Query: 735  SKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGGIFRNEDDN 556
            S + + +       +   +   + W     G  KLN+DG  K  S  A  GG+ RNE+  
Sbjct: 1177 SSEARCLLAKRTGLQTAFQ-TWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGL 1235

Query: 555  WIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKDNTTLHPL 376
            W+ GY   +GT ++ L E+  ++EGL +A       L+ E DS   +Q++ KD       
Sbjct: 1236 WVAGYICNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDA 1295

Query: 375  SNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPSGMCNILYG 196
            S  + DC+ L    + +   H+ RE NQ ADFLAN+G + +    ILER P  +   L  
Sbjct: 1296 SILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQSSSWGTTILERPPDDLRIFLQR 1355

Query: 195  DQVGTTYPR 169
            D +G    R
Sbjct: 1356 DAIGLASSR 1364


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score =  301 bits (770), Expect = 3e-78
 Identities = 172/549 (31%), Positives = 273/549 (49%), Gaps = 2/549 (0%)
 Frame = -2

Query: 1809 CDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVL 1630
            C+EIDK  ++F+W      R LH ++W +IC PR+ GGLGLR  R  N AF  KMAWQ+ 
Sbjct: 1351 CNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIF 1410

Query: 1629 HCPNKPWVKILVDKYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSL 1450
               +K WVK+L +KY +N    + + +   S  W+ + KG  ++   +   +GNGR+ + 
Sbjct: 1411 SNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINF 1470

Query: 1449 WYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMSI 1270
            W D W+GD  L      I      + KVE +  S  +WD   + +I+  +++  +    I
Sbjct: 1471 WNDWWVGDGPLASNTDCINQPHMTDIKVEDLTTSQRRWDTGALHNILPINMIDMVRATPI 1530

Query: 1269 PYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWLVI 1090
              N++ ED   W   T+GM +  S Y +    HD D     WI +    +KIK F+W ++
Sbjct: 1531 AINSEQEDFPSWPHSTTGMVTVSSAY-SLIAGHDGDGRSHDWIWRATCTEKIKLFMWKIV 1589

Query: 1089 HGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTERGTDN 910
               L      ++RG+ ++  C VC +EDE  DH+FR C  A+  W +    P T + +++
Sbjct: 1590 KNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSA-VPPLTFQTSNH 1648

Query: 909  LHL--WIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQIFLY 736
            LH+  W+K     ++     +    +F   +W +WK RN+ V     T+  DI  + F+ 
Sbjct: 1649 LHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFME 1708

Query: 735  SKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGGIFRNEDDN 556
            S + + +       +   +   + W     G  KLN+DG  K  S  A  GG+ RNE+  
Sbjct: 1709 SSEARCLLAKRTGLQTAFQ-TWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGL 1767

Query: 555  WIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKDNTTLHPL 376
            W+ GY   +GT ++ L E+  ++EGL +A       L+ E DS   +Q++ KD       
Sbjct: 1768 WVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDA 1827

Query: 375  SNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPSGMCNILYG 196
            S  + DC+ L    + +   H+ RE NQ ADFLAN+G + +    ILER P  +   L  
Sbjct: 1828 SILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQSSSWGTTILERPPDDLRIFLQR 1887

Query: 195  DQVGTTYPR 169
            D +G    R
Sbjct: 1888 DAIGLASSR 1896


>ref|XP_009344908.1| PREDICTED: uncharacterized protein LOC103936764 [Pyrus x
            bretschneideri]
          Length = 1365

 Score =  289 bits (739), Expect = 1e-74
 Identities = 167/561 (29%), Positives = 277/561 (49%), Gaps = 6/561 (1%)
 Frame = -2

Query: 1833 ANRQNLHCCDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFS 1654
            + R  +  CD+IDK+ ++F+W   +++  +HL+ WE +  P+SMGGLGL+ T  +N A  
Sbjct: 806  STRLPISICDKIDKLNRNFLWGHTEDKSKVHLVKWETVSTPKSMGGLGLKDTHAMNQALL 865

Query: 1653 AKMAWQVLHCPNKPWVKILVDKY-ERNEKIPYCKPKPTD-SHVWKDVCKGLTLIREELIS 1480
            AK  W+++      W ++L  KY + ++ +  C  K T+ SH W+ +  G  +I   +  
Sbjct: 866  AKTGWKLMQRDPGLWAQVLKGKYLKHHDMVGACSAKFTNCSHTWRGILFGAQIIPNGMRW 925

Query: 1479 LIGNGRQCSLWYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPD 1300
             +G+G Q   W D WL    L     + +     E+ V+  +  DG W++  + S + PD
Sbjct: 926  RVGSGSQIHFWKDNWLESGVLENFATIPLSADMLEWSVDDFLTDDG-WNVELLYSCLPPD 984

Query: 1299 IVATIERMSIPYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGDWTW--I*KIKA 1126
            IV  I  + +   N  ED+ IW    SG FS K+ Y +  L  D D   W W  I K+K 
Sbjct: 985  IVEHIFSLHVGIANHREDKVIWSLTNSGTFSVKTAYLS--LFGDDDIIPWKWNFIWKLKL 1042

Query: 1125 PQKIKTFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNV 946
            P K+ TF+W + HG++ T     +RG   +  C +C   +E+ DH+FR C  +   W+ V
Sbjct: 1043 PPKLVTFLWTIGHGKILTNVQRARRGFTNNPCCPICPNIEESMDHIFRSCKQSPFFWNGV 1102

Query: 945  NHDPGTERGTD-NLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTS 769
               P        +   W+  N+  + +         +F + +W+ WK RN  V       
Sbjct: 1103 GIPPEVAHSFALDFQSWMAINLRTQCSTIHGLPWNLIFASTLWYCWKGRNNLVFNDGQQP 1162

Query: 768  LYDIKRQIFLYSKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAG 589
                ++ IF +++D  +   +  +S+ PR+I  I W+    G  K+N DG          
Sbjct: 1163 PVSPQKFIFQFARDWYDANKST-SSKPPRQIISIHWIHPPIGRYKINTDGSCNDPFRHIS 1221

Query: 588  YGGIFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQL 409
             GG+ RN + +WI G+   LG G+    E+  +  GL IA +   +D+++E DS  A+ L
Sbjct: 1222 AGGLIRNSEGDWIKGFAANLGRGTIMEAELWGVFMGLSIAWDEGCRDVILECDSWDAVTL 1281

Query: 408  IYKDNTTLHPLSNFLMDCR-SLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILE 232
            I K     HPL N ++DC+ ++    RC    H+YRE N +AD +A++G   +  + +  
Sbjct: 1282 IQKPILDSHPLYNLIIDCKEAIGKNWRC-EVTHIYREMNASADHMADLGHGLSLGLHVFV 1340

Query: 231  RSPSGMCNILYGDQVGTTYPR 169
              P+   N+L  D +G   PR
Sbjct: 1341 SPPTSASNVLVSDSIGRALPR 1361


>gb|AIK35195.1| LINE-type retrotransposon LIb DNA [Ipomoea batatas]
          Length = 1836

 Score =  270 bits (689), Expect(2) = 3e-73
 Identities = 158/556 (28%), Positives = 255/556 (45%), Gaps = 9/556 (1%)
 Frame = -2

Query: 1809 CDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVL 1630
            C+++DK+ ++F+W      + +H ++W  IC PR MGGLGLR+ R  N AF  KMAWQ+ 
Sbjct: 1289 CNDVDKICRNFLWGHTDNTKKIHTVNWSHICRPRQMGGLGLRTARDFNMAFLTKMAWQIF 1348

Query: 1629 HCPNKPWVKILVDKYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSL 1450
               ++ WVK+L +KY + +   +       S  W+ + KG  ++ + L   +G+G   + 
Sbjct: 1349 TNQDRLWVKVLREKYVKQDDFLHIPQCSNASWGWRGILKGRNILAKGLKWCVGDGTAINF 1408

Query: 1449 WYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMSI 1270
            W+D W G   L                V   I +   WD++ + +++ P  +  I  + +
Sbjct: 1409 WHDWWTGKKPLITATNTHDAGQHEPTTVSAFIDNQRNWDIQALSNLLPPSTINDIRAVPL 1468

Query: 1269 PYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWLVI 1090
            P  NQ  D+  W    SG+ S  S + +    HD     + WI K+   +K+K FIW ++
Sbjct: 1469 PAANQQVDKLTWPHSNSGLVSVSSAF-SFISGHDDSDNSYAWIWKLPCVEKVKLFIWKIM 1527

Query: 1089 HGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVN---------HD 937
               L T +  ++RG++E+  C  C   DE  DH+FR C  A   W             H 
Sbjct: 1528 ENGLLTNSERRRRGLLEAATCPSCGTNDETIDHLFRSCDVAVNCWEAAAPPTAFMYSFHL 1587

Query: 936  PGTERGTDNLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDI 757
            P T        +W++ +    +          +F   +W +WK RN QV     T+   I
Sbjct: 1588 PVT--------VWMEKSCASNQTNGRGISWRLIFPYILWNMWKGRNNQVFNNVCTNGNAI 1639

Query: 756  KRQIFLYSKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGGI 577
             +     + + +   L        R++  I W   + G +K+N+DG  K  SG A  GG+
Sbjct: 1640 VKIAEQEASEAQRFLLPHAGPLRARQL-WIPWSPPQPGFVKMNSDGAMKANSGMASAGGL 1698

Query: 576  FRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKD 397
             R+   NWI+G+   +G  ++ L E+   +EGL IA       ++ E DS   +Q++  D
Sbjct: 1699 LRDHMGNWIVGFSTNIGHTNSFLAELWGFREGLVIAKNRGYNHIIAETDSEAVVQVLIND 1758

Query: 396  NTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPSG 217
                      L DC+SL  Q +     H +RE NQ AD LANIG +        +  P+ 
Sbjct: 1759 RAVGPFDFTLLADCKSLIHQFQECRIMHTFREGNQCADHLANIGQSITSGTTWWDHPPAE 1818

Query: 216  MCNILYGDQVGTTYPR 169
            +  +L  D  G TY R
Sbjct: 1819 LTELLNRDAWGVTYCR 1834



 Score = 36.6 bits (83), Expect(2) = 3e-73
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 1979 QMKLSKSSYLHIIQRIKNKFGQ*NANQLNFAGMVTFAQSSLLSIHVYTQQ 1830
            Q ++S+ ++  ++++++ K     A+ LN AG     QSSL S+  YT Q
Sbjct: 1231 QKRVSRHTFSSVVEKMRKKLATWKASTLNMAGRRILVQSSLASVPTYTMQ 1280


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score =  258 bits (658), Expect = 3e-65
 Identities = 174/551 (31%), Positives = 251/551 (45%), Gaps = 12/551 (2%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            +EI+K  + F+W    +   L  +SW++IC P   GGLG R     N AF AK+ W ++ 
Sbjct: 819  NEIEKDCRKFLWNKMDKSHYLARMSWDRICSPTGKGGLGFRRLHNWNLAFMAKLGWMIIK 878

Query: 1626 CPNKPWVKILVDKYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSLW 1447
               K WV+IL  +Y           K   S +W+D+ KG  L+ + L+  IGNGR  SLW
Sbjct: 879  DETKLWVRILKARYWERGSFLSAVGKNHHSPIWRDIVKGRELLEKGLVRRIGNGRSTSLW 938

Query: 1446 YDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMSIP 1267
            Y  W+G   L    G  I +    ++V  II   G+WD + I  ++ PDI+  I+ + + 
Sbjct: 939  YHWWVGGGPLVDVMGSNIPEFMSHWQVSNII-KRGRWDTKKISHLLPPDILKQIKEIPLA 997

Query: 1266 YNNQCEDQWIWKWITSGMFSTKSFY--ANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWLV 1093
              ++ ED + W +  +G FS KS Y   N         G W  + +   P K K  IW  
Sbjct: 998  SMSEVEDDFTWNFEKNGTFSVKSAYYLINRREEETGGKGSWRGLWRKNIPFKYKLLIWNG 1057

Query: 1092 IHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNV--NHDPGTERG 919
            IH  LPT   L KR    +  C  C    E+  H+FR C  A  +W  +  +H P  +  
Sbjct: 1058 IHNILPTALFLAKRIHNFNPQCVACDHPIEDMIHLFRDCCVASSVWIEILKHHKPNNQNL 1117

Query: 918  TDNLHL--WIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQI 745
              NL    WI  N+            V  F T  W IW  RNK V          +    
Sbjct: 1118 FFNLEWEEWIDFNLNQH------DYWVTKFTTAFWHIWCSRNKTVFE------CAVNHPK 1165

Query: 744  FLYSKDLKNIYLNLCTSEIPREIKEISWVKLR-----NGSLKLNADGCSKGTSGRAGYGG 580
            F Y++ + + + N+   ++       S V LR      G LKLN DG  K     AG GG
Sbjct: 1166 FTYNRVVADFFTNIRAFQVNNTQGNGSKVVLRWKPPHQGFLKLNTDGAWKADWENAGIGG 1225

Query: 579  IFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYK 400
            +FR+   NW +G+   +  GS    E+ AI+EGL++A + N   L VE D+   +QL+ K
Sbjct: 1226 VFRDAVGNWELGFAKRVDAGSPEAAELMAIREGLQVAWDCNYHKLEVECDAKGVVQLLAK 1285

Query: 399  D-NTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSP 223
                  HPL   +MD   L T+   V F H+ RE N+ A  LA   V + +  VI    P
Sbjct: 1286 PLEAENHPLGVIVMDICILLTRHWSVEFLHIKREGNKVAHCLAAEAVNQVEERVIFINPP 1345

Query: 222  SGMCNILYGDQ 190
                 + + D+
Sbjct: 1346 EHAKEVYFKDK 1356


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score =  246 bits (628), Expect = 8e-62
 Identities = 157/543 (28%), Positives = 262/543 (48%), Gaps = 9/543 (1%)
 Frame = -2

Query: 1770 KGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLHCPNKPWVKILVD 1591
            K    RRG+HL+ W+KI +PR +GGLG++S R+ N     K+ W++ H  +K WV +L  
Sbjct: 347  KAGTNRRGVHLVGWKKIAMPRHLGGLGIKSAREANTCLLGKLVWELFHNKHKLWVSLLAA 406

Query: 1590 KYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSLWYDRW--LGDI-S 1420
            KY     +       + S +W  + +   ++        G+G   S W+  W   G + S
Sbjct: 407  KYTAGPNLLNASITSSSSPIWSSIIRAKNVLISGYSWRPGSG-SSSFWFTHWSEFGPLCS 465

Query: 1419 LHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMSIPYNNQCEDQW 1240
            L     V I+D+   +   + + S+ +  L  + + +   +   I  ++  +N+  ED +
Sbjct: 466  L-----VPIIDIHDLHLTVKDVISNNQRSLM-LYTPLPQAVTDCINTINFRFNDAIEDVF 519

Query: 1239 IWKWITSGMFSTKSFY--ANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWLVIHGRLPTRT 1066
            IW    +G +S KS Y    +   +D++   W+WI K K  +K K  IWL  H  LPT  
Sbjct: 520  IWPHNKNGTYSAKSGYQWLLSLSGNDNNTHSWSWILKKKISEKYKFLIWLACHDSLPTAA 579

Query: 1065 LLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTERGTDNLHLWIKNN 886
            LL  R I+ S  C  C   DE+  H  R CP +K IW ++           ++ +W K+ 
Sbjct: 580  LLHHRQIIASATCARCGVSDESVFHCIRDCPFSKIIWHHIGFSEPYFFAVTDIEIWCKSG 639

Query: 885  VEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQIFLYSKDLKNIYLN 706
            +   +          LF   +W+IW+ RN + ++ E   L  +   I  +  D+ + +  
Sbjct: 640  LIGSK--------AILFAAGLWWIWRSRNARCMSEESMLLQRLAANITYFVDDINSCFF- 690

Query: 705  LCTSEIPREIKEISWVKLRNGSLK---LNADGCSKGTSGRAGYGGIFRNEDDNWIIGYCG 535
                 +P  + +  +VK  N +     LN DG   G+  RAG+GG+ RN    ++ G+ G
Sbjct: 691  ---QPLPVMVSD-RYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRNSVGFYLSGFLG 746

Query: 534  YLGTGSN-TLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKDNTTLHPLSNFLMD 358
            +L + S+  L E+ AI +G+  AI+M I D+ V +DS+ ++ LI   ++  H  +  + D
Sbjct: 747  FLPSSSDILLAELTAIYDGINTAIDMGITDMAVYSDSLLSINLITTTSSKFHIHAALIQD 806

Query: 357  CRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPSGMCNILYGDQVGTT 178
             R     LR  S  H  RE NQ+AD+LA +G   +  V+I +  P  +C +L  D  GT 
Sbjct: 807  IRD-KLSLRNFSLNHTLREGNQSADYLAKLGAMSDVNVLIHQSPPDELCPLLKNDAAGTL 865

Query: 177  YPR 169
            + R
Sbjct: 866  FLR 868


>ref|XP_010674616.1| PREDICTED: uncharacterized protein LOC104890737 [Beta vulgaris subsp.
            vulgaris]
          Length = 1149

 Score =  236 bits (603), Expect = 7e-59
 Identities = 159/524 (30%), Positives = 248/524 (47%), Gaps = 8/524 (1%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            ++I K VK F+W    +R  +   SW+++C P   GGLG+R  R  N  F AK+ W  L 
Sbjct: 604  NDIQKNVKRFLWNKVGQRHYISRTSWDQVCKPMIEGGLGIRDLRHWNLCFMAKLGWTFLT 663

Query: 1626 CPNKPWVKILVDKYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSLW 1447
             P+K WV+IL  K  +        P  + S +W+D+ KG  ++R+ LI  +GNG   SLW
Sbjct: 664  QPSKLWVRILKSKNCKGSNFMDVIPNVSHSTIWRDILKGRDMLRQGLILNVGNGEDISLW 723

Query: 1446 YDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMSIP 1267
            +  W+G   L++   ++I +    ++V  II  + +W++  I +++  +IV  I  + + 
Sbjct: 724  FHHWVGKEPLYKLKDLVIPEDIAHWRVAHII-HNKEWNITHIANLLPQEIVDEICAIPLT 782

Query: 1266 YNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDS----DAGDWTWI*KIKAPQKIKTFIW 1099
              ++ +D   W + T G FS K+ Y  N  P +S        W+ + +I+ P K +   W
Sbjct: 783  KFDEVKDGLRWLFTTDGEFSIKTAY-RNLNPSNSRRIQSLKKWSKLWRIEIPFKYRMLFW 841

Query: 1098 LVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTERG 919
             V+H  LPT   LQKR     T C  C    E   H+FR C +A  +W     +    R 
Sbjct: 842  NVVHEILPTAVNLQKRIHAFDTTCQCCLLATETHLHLFRNCLHANLLWKFFFQNCHLARA 901

Query: 918  TDNLHLWIKNNVEPRRNRYADS--E*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQI 745
             D +H +  N+ E   N   D   E + +F+  +W IWK RNK V               
Sbjct: 902  ID-IHCFFNNDWEDWINFNLDQSLEWLQMFVIALWHIWKNRNKVVFERAMARSSSQFNHF 960

Query: 744  FLYSKDLKNIYLNLCTSEIPREIKEIS-WVKLRNGSLKLNADGCSKGTSGRAGYGGIFRN 568
            FL     KN + N    ++   +++I+ W    +G LKLN DG  K     +G GG+ R 
Sbjct: 961  FLDYLHNKNAFQN--QDKVAPNVQQITIWKPPVHGYLKLNTDGSWKANDKASG-GGVIRR 1017

Query: 567  EDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMT-ALQLIYKDNT 391
             D +W +G+       +    E+  I+EGL +A + NI  L +E D+    + L   ++ 
Sbjct: 1018 TDGSWFMGFSIKFRAVNLAAAELITIREGLSMAKDHNISRLEIETDAQALKIMLDRAEHQ 1077

Query: 390  TLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVA 259
              H LS  + D   L      V F H  R+AN  A  LA  G+A
Sbjct: 1078 PHHQLSAIICDIVKLIKTNWVVIFLHAKRDANMVAHKLARFGMA 1121


>ref|XP_009119466.1| PREDICTED: uncharacterized protein LOC103844431 [Brassica rapa]
          Length = 1834

 Score =  236 bits (603), Expect = 7e-59
 Identities = 171/559 (30%), Positives = 261/559 (46%), Gaps = 13/559 (2%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            +++DK+ + FIW      R  HL++WEK+C PR  GGLG+RS +++N A  AK+ W+VL+
Sbjct: 1278 NQLDKIARSFIWGSVDGDRKQHLVAWEKVCKPRREGGLGIRSAKEMNIALLAKLGWRVLN 1337

Query: 1626 CPNKPWVKILVDKYERNE--KIPYCKPKPTDSHVWKDVCKGL-TLIREELISLIGNGRQC 1456
              +  WV+IL  K+   E  +  +  PK T S  W+ +  G+   +      ++G+GR+ 
Sbjct: 1338 THDDLWVQILRKKFRVGEIHESSWLVPKGTWSPTWRSIILGVGECVVPGTCWILGDGRRV 1397

Query: 1455 SLWYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERM 1276
              W D WL    L     V I +   E K   +  S   W ++ I+  IS +    +  +
Sbjct: 1398 RFWKDNWLMQEPLQSLSTVDIPEELLEAKARDLWQSGRGWLIQCIEPYISMEHRLCLASV 1457

Query: 1275 SIPYNNQCEDQWIWKWITSGMFSTKSFYA-----NNCLPHDSDAGDWTWI*KIKAPQKIK 1111
             I       D+  W     G+FS KS YA         P+ +   D  W  ++  P++++
Sbjct: 1458 VIDDVTGARDRMSWGGSKDGLFSVKSAYALLTKDEKPRPNMNAFYDRVW--RVIVPERVR 1515

Query: 1110 TFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPG 931
             F+WLV H  + T    ++R + ++ +C +C   +E   H  R CP +  +W  +     
Sbjct: 1516 VFLWLVSHQVIMTNMERKRRHLSDNGMCQLCKSGNETILHTLRDCPASMGLWRRLVDPSR 1575

Query: 930  TERGTD-NLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIK 754
             +R  D +L  W+  N+   ++   +     +F   VW+ WK R   V  GE     D  
Sbjct: 1576 QQRFFDQSLLQWLYENLTSAQSANGERW-PTMFALTVWWCWKWRCGYVF-GETGKCPD-- 1631

Query: 753  RQIFLYSKD----LKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGY 586
            R  F+  K     L N  L L  +   RE + I W +  NG  KLN DG S+G  G A  
Sbjct: 1632 RVKFVKDKTQEVTLANNKLRLHLAVGLREERHIKWRRPSNGWCKLNTDGASRGNPGLATA 1691

Query: 585  GGIFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLI 406
            GG+ R+E+  W  G+   +G  S TL E+  +  G  IA E  I+ L VE DS T +  +
Sbjct: 1692 GGVMRDENGEWQGGFAVNIGICSATLAELWGVYYGFVIAWENGIRRLEVEVDSATVVGFL 1751

Query: 405  YKDNTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERS 226
                   HPLS  +  C    ++   V   HVYREAN  AD LAN   + +  V   E  
Sbjct: 1752 KTGIHDAHPLSFLVRLCYGFISRDWLVKISHVYREANCLADGLANYAFSLSFGVHYFELV 1811

Query: 225  PSGMCNILYGDQVGTTYPR 169
            P  + +IL  D  G T  R
Sbjct: 1812 PEHVASILLEDVYGITRSR 1830


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  235 bits (599), Expect = 2e-58
 Identities = 160/556 (28%), Positives = 254/556 (45%), Gaps = 9/556 (1%)
 Frame = -2

Query: 1809 CDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVL 1630
            CD+ID+  + F+W  ++ +R +HL++WE I   +  GGLG+RS RQ N AF  K+ W++L
Sbjct: 821  CDDIDRKSRSFLWGEQEGKRRVHLVAWENISKSKKEGGLGIRSMRQANSAFLVKLGWRLL 880

Query: 1629 HCPNKPWVKILVDKYERNE-KIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCS 1453
              P+  W +IL  KY  N   I   K K   S  W+ +   + ++R+ + S +GNG +  
Sbjct: 881  AEPSSLWSRILRAKYCDNRCDIDMFKEKSNASSTWRGILSSIDVVRKGINSAVGNGAKTL 940

Query: 1452 LWYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERMS 1273
             W+ RW     L      I     ++  V+ +      W +    + +    +  I    
Sbjct: 941  FWHHRWATSEPLISLASPIPPIELQDATVKEMWDLVSGWKVDVFANYLPEATLKLIAAHE 1000

Query: 1272 IPYNNQCEDQWIWKWITSGMF---STKSFYANNCLPHDSDAGDWTWI*KIKAPQKIKTFI 1102
            +  + +  D   W    SG F   S  +   N  L +      W+ + KI  PQ+++ FI
Sbjct: 1001 LIDDEEAIDDIYWNGSPSGGFTIGSAMNITRNAELANMDAHPKWSAVWKIPTPQRVRFFI 1060

Query: 1101 WLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTER 922
            WL I  RL T +    R + +   C VC + +EN DH+ R CP A+ +W  +       R
Sbjct: 1061 WLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILWRKLGMLGEHNR 1120

Query: 921  GTDNLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQIF 742
               NL  WI  N+    +    SE + +F    W++W+ RN +      +   D    IF
Sbjct: 1121 EEINLGSWITKNLS--ADTMMGSEWLRVFAVSCWWLWRWRNDRCFNRNPSIPIDQVSFIF 1178

Query: 741  LYSKDLKNIYLNLCTSEIPREIKE----ISWVKLRNGSLKLNADGCSKGTSGRAGYGGIF 574
               K++K       T++     +     + W   + G +KLN DG SKG  G AG GG+ 
Sbjct: 1179 ARVKEIKEAMDRNDTNKSQHSGRRKEILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLI 1238

Query: 573  RNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKDN 394
            R         +    G+ + T  E+ A+  GL IA E N + ++V  DS    +L+  + 
Sbjct: 1239 RGPRGEIHEVFAINCGSCTCTKAELLAVLRGLMIAWEGNHKQVIVSVDSELVAKLLISNA 1298

Query: 393  TTLHPLSNFLMDCRSLATQLRC-VSFRHVYREANQAADFLANIGVARNDFVVILERSPSG 217
                P  + +  C SL  +    +   H YRE N+AAD LAN+GV   + VV++E  P  
Sbjct: 1299 PPSSPYIHIINRCLSLIARKEWKIVIEHCYRETNRAADRLANMGVCAVERVVMIEAIPKD 1358

Query: 216  MCNILYGDQVGTTYPR 169
            +  IL  D  G  + R
Sbjct: 1359 LHAILLEDLSGVAWTR 1374


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
            transferase, Ribonuclease H fold [Medicago truncatula]
          Length = 729

 Score =  224 bits (571), Expect(2) = 5e-58
 Identities = 140/474 (29%), Positives = 225/474 (47%), Gaps = 3/474 (0%)
 Frame = -2

Query: 1809 CDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVL 1630
            CDEI+K+ + F+W    + R  HL+SW+  C+P+  GGLG +    +N+AF  KM W ++
Sbjct: 245  CDEIEKIQRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLGFKRPHHMNEAFLMKMLWNLI 304

Query: 1629 HCPNKPWVKILVDKYERNEKI-PYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCS 1453
              P+K W ++L  KY RN  +      +P DS +WK +       +  +I  IG+GR  +
Sbjct: 305  KQPDKLWCRVLYSKYGRNNDLNNNISSQPYDSPLWKAIVGIWDDFKRHVIWQIGDGRSTN 364

Query: 1452 LWYDRWL-GDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERM 1276
             W D+W+  + SL        +D      V   I + G WDL  +   +  DIV  I  +
Sbjct: 365  FWLDKWISNNTSLFSSSTQSYVD--TTISVRDAINTSGVWDLNFLMDNLHVDIVNQILAL 422

Query: 1275 SIPYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWL 1096
              P +    D   W    +  F+ +S Y        +  GDW  +   K P +I+TFIWL
Sbjct: 423  PTPSDFDGPDTIGWGGTNTLKFTVQSAYNLQQENPFAVGGDWKTLWNWKGPHRIQTFIWL 482

Query: 1095 VIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSN-VNHDPGTERG 919
              HGR+ T     K G+  S  C  C +EDE   H+ R C ++ ++W   + H+  T   
Sbjct: 483  AAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFF 542

Query: 918  TDNLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQIFL 739
            + +   W+ NN+  +      +     F+T  W++W  RNK +         +    I  
Sbjct: 543  SFDCREWVFNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFEIGFQRPSNPTLVIQK 602

Query: 738  YSKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGGIFRNEDD 559
            +++++++    +  S   +E   I W++   G +KLN DG  KG+   AG GG+ R+ D 
Sbjct: 603  FTREIEDNTKLVHKSSHQKETIYIGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDG 662

Query: 558  NWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKD 397
             WI GY   +G       E+  +  GL +A   N   L+VE+DS   L L++ D
Sbjct: 663  RWIKGYFKKIGMCDAFHAEMWGMYLGLDMAWRENTTHLIVESDS-KILSLLFDD 715



 Score = 31.2 bits (69), Expect(2) = 5e-58
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 1973 KLSKSSYLHIIQRIKNKFGQ*NANQLNFAGMVTFAQSSLLSIHVYTQQTGRI 1818
            + S+  + HII +I+NK        L+ AG +T ++  + SI  Y  Q  +I
Sbjct: 189  RTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSIPYYHMQYAKI 240


>gb|AID60103.1| hypothetical protein [Brassica napus]
          Length = 620

 Score =  227 bits (579), Expect = 4e-56
 Identities = 165/551 (29%), Positives = 261/551 (47%), Gaps = 13/551 (2%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            +++DK+ + FIW      R  HL+SWEKIC P+  GGLG+R  +++N A  AK+ W++L+
Sbjct: 64   NQLDKIARAFIWGSIDGTRKQHLVSWEKICKPKREGGLGIRLAKEMNVALLAKLGWRMLN 123

Query: 1626 CPNKPWVKILVDKYERNE--KIPYCKPKPTDSHVWKDVCKGLTLIREELIS-LIGNGRQC 1456
              +  WV IL  K+   E     +  P+   S  W+ +  G+  +    +S ++G+GR+ 
Sbjct: 124  TEDGLWVNILCKKFRVGELDDASWLVPQGRWSPTWRSLVMGIREVVAPGVSWILGDGRRV 183

Query: 1455 SLWYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERM 1276
              W DRWL    L     + I +   E K   +      W L+ I+   S      +  +
Sbjct: 184  RFWRDRWLLKEPLEALSLIDIPEELVEAKTRDLWQQGIGWILQQIEPYTSLQNRLQLASL 243

Query: 1275 SIPYNNQCEDQWIWKWITSGMFSTKSFYA---NNCLPHDSDAGDWTWI*KIKAPQKIKTF 1105
             I       D+  W     G+FS K+ YA    + +P  +    ++ + ++ AP++++ F
Sbjct: 244  VIDEVTGARDRMSWGEAKDGLFSVKAAYAFLTKDAVPRPNMEDLYSRVWRVTAPERVRVF 303

Query: 1104 IWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTE 925
            +WLV H  + T    ++R I E+  C +C   DE   H+ R CP A  +W  +   P  +
Sbjct: 304  LWLVTHQVIMTNMERKRRHISENGTCPLCKSGDETILHVLRDCPAAAGLWRKLVL-PTRQ 362

Query: 924  RGTDNLHL--WIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKR 751
            +   NL L  W+  N+   ++   D +  +LF   VW+ WK R   V  GE     D  R
Sbjct: 363  QRFFNLTLFEWLYENLANDKSVNGD-QWPSLFALTVWWCWKWRCGYVF-GEIGKCRDRVR 420

Query: 750  QIFLYSKDLKNIYLNLCTSEIPREI-----KEISWVKLRNGSLKLNADGCSKGTSGRAGY 586
              F+  K  + I  N    E P  I     ++I+W    NG +KLN DG S+G  G A  
Sbjct: 421  --FVKDKAQEVIKANKKVRE-PSAIGVHVERQIAWFVPENGWVKLNTDGASRGNPGLATA 477

Query: 585  GGIFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLI 406
            GG  R+E+  WI G+   +G  S  L E+  +  GL IA +  I+ L VE DS + +  +
Sbjct: 478  GGALRDEEGKWIGGFSLNIGICSAPLAELWGVYYGLCIAWDKGIRKLEVEVDSKSVVGFL 537

Query: 405  YKDNTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERS 226
                   HPLS  +  C    ++   V+F HVYRE N+ AD LAN   +    +   +  
Sbjct: 538  KTGIHDSHPLSFLVRLCYGFVSRDWIVNFSHVYRETNRLADGLANYAFSLQFGLHFFDSV 597

Query: 225  PSGMCNILYGD 193
            P  +  I+  D
Sbjct: 598  PEHVAPIMLED 608


>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 768

 Score =  224 bits (571), Expect = 3e-55
 Identities = 164/557 (29%), Positives = 247/557 (44%), Gaps = 12/557 (2%)
 Frame = -2

Query: 1803 EIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLHC 1624
            ++D++ + F+W G  E R + L+SW  IC P+  GGLG +    +N+A   K+AW ++  
Sbjct: 247  KLDQICRRFLWSGNDELRKMSLVSWHNICQPKMAGGLGFKRLDIMNEALLLKVAWHLITE 306

Query: 1623 PNKPWVKILVDKYERNE-KIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSLW 1447
            PNK  V++L  KY     +IP+  P    SH+WK V +     +  +  ++GNG +   W
Sbjct: 307  PNKLCVQVLSTKYGVPPLEIPHTLPTRYGSHLWKSVGRVWDYAKRGIRWIVGNGWKVKFW 366

Query: 1446 YDRW------LGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATI 1285
            +D W      L D+++H  P     D+   Y V   +++DG W+      I+    V  I
Sbjct: 367  WDCWATTPLTLADLAIHPIPP----DLSDLY-VADFVSTDGSWNWPKFSHILPHQAVMII 421

Query: 1284 ERMSIPYNNQCEDQWIWKWITSGMFSTKSFY--ANNCLPHDSDAG---DWTWI*KIKAPQ 1120
              +  P      DQ  W     G F+ KS Y   +     + D+     W+W    K PQ
Sbjct: 422  ASIHPPSACNGVDQVYWAASPQGDFTVKSAYDLLDQSRGQERDSYWKIAWSW----KGPQ 477

Query: 1119 KIKTFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNH 940
             IK FIWLV+H RL TR  L  R +     C  C    EN  H+   CP +K        
Sbjct: 478  SIKIFIWLVLHNRLKTRAELATRRLNIEPSCERCGAGLENTIHVLHDCPYSKA------- 530

Query: 939  DPGTERGTDNLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYD 760
               T  GT    LW                   +F   +W +W  RN+ +   +H     
Sbjct: 531  --STSLGTK---LWRV-----------------IFGVAIWRLWFWRNRFIFTKDHWESSA 568

Query: 759  IKRQIFLYSKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGG 580
            I   I + + +++    +L  ++  R  K I W       +KLN DG  K  S  AG G 
Sbjct: 569  IALDIKVRAAEIQQCNSSLTATDKSRVEKWIRWGAPTWPWVKLNTDGAKK-PSDHAGAGE 627

Query: 579  IFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYK 400
            + R+    W IGYC  LG  S T  E+  +  GL IA     + ++VE DS   LQL+  
Sbjct: 628  LIRDYKGVWQIGYCANLGFCSVTSAELWGLFHGLSIAWLHGYRRVIVEVDSRCILQLVSN 687

Query: 399  DNTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPS 220
             N T++   + +   + L  +   +   H+YREAN A+DFLA   +A    +   +  P 
Sbjct: 688  SNPTINEHLSLITAIQELIGRDWLIQMNHIYREANAASDFLATYSLAFPVGLHYFQSPPL 747

Query: 219  GMCNILYGDQVGTTYPR 169
             + NIL  D  G  + R
Sbjct: 748  NLLNILNNDVSGVAHSR 764


>ref|XP_010670869.1| PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp.
            vulgaris]
          Length = 1295

 Score =  219 bits (558), Expect = 1e-53
 Identities = 156/542 (28%), Positives = 254/542 (46%), Gaps = 16/542 (2%)
 Frame = -2

Query: 1809 CDEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVL 1630
            CD+ID+  + F+W G ++ + +HLI+W+ +  P+  GGLGL S    N AF AK+ W++L
Sbjct: 764  CDDIDRKTRRFVWGGNEDTKKVHLIAWDALQRPKDQGGLGLHSASHANKAFMAKLGWRLL 823

Query: 1629 HCPNKPWVKILVDKYERNE-KIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCS 1453
              PN  W ++L  KY +        +PK   S+VW  + +   ++ E + S IGNG +  
Sbjct: 824  TEPNALWSRVLRTKYCKGRCDSDMFQPKTGASNVWNRIAENSNILCEGIRSAIGNGIKTL 883

Query: 1452 LWYDRWLGDISL----HQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATI 1285
             W  +W+ +  L     Q P   I        V  +  S G W        +S D +  I
Sbjct: 884  FWDHKWMSNTPLIDCVTQPPPTEIAGA----TVSEMWESGGGWKWEVFSPYLSEDSLKLI 939

Query: 1284 ERMSIPYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGD---WTWI*KIKAPQKI 1114
            +   +  + + ED   W     G FS KS  A   +  +S       W  + K    Q++
Sbjct: 940  QAHVVIDDPEVEDLLYWDGDPKGKFSIKS--AIRIIRKESTEFQDQLWNLVWKASVQQRV 997

Query: 1113 KTFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNH-- 940
            + F+WLV H RL       KR + +   C VC    E+  H+ R CP A+ +W  V    
Sbjct: 998  RAFMWLVCHDRLLGNANRFKRNLTDDPKCFVCGDFVESTLHILRDCPAARSVWRKVEGFA 1057

Query: 939  -DPGTERGTDNLHLWIKNNVEPRRNRYADSE-*VNLFLTCVWFIWKRRNKQVIAGEHTSL 766
             DP   R   +L  WI +N+E     Y D E   + F   +W++W+ RN  V    +   
Sbjct: 1058 LDPNFYR--VDLKNWISSNLE-----YNDQETWPSFFAIIIWWLWRWRNMFVFGRGNEVP 1110

Query: 765  YDIKRQIFL-YSKDLKNIYLNLCT--SEIPREIKEISWVKLRNGSLKLNADGCSKGTSGR 595
             D+   + + + +  ++++ ++ T  S   R  K I+W     G   LN DG ++GT G 
Sbjct: 1111 IDVGAFLKIRFDETWRSLHGDMDTSGSNGHRVEKYIAWSPPPMGWYVLNTDGAARGTPGD 1170

Query: 594  AGYGGIFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTAL 415
            AG G I RN    +I       G       E+ A+  GL++AI +    L ++ D+++ +
Sbjct: 1171 AGGGVIIRNHSGMFISALSLNFGRCCAFRAEVLALLRGLELAINLQFTHLQIQLDNLSCV 1230

Query: 414  QLIYKDNTTLHPLSNFLMDCRS-LATQLRCVSFRHVYREANQAADFLANIGVARNDFVVI 238
            Q +   N++    ++ +  C + L  ++  V   HV+RE N+AAD+LAN GV  +    +
Sbjct: 1231 QALNSGNSSCGGCTHLIRHCLNLLRREVWVVKVVHVFREGNRAADWLANRGVDHSHGSSV 1290

Query: 237  LE 232
            LE
Sbjct: 1291 LE 1292


>ref|XP_009101981.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 1235

 Score =  218 bits (555), Expect = 2e-53
 Identities = 157/557 (28%), Positives = 253/557 (45%), Gaps = 12/557 (2%)
 Frame = -2

Query: 1803 EIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLHC 1624
            ++DK+ + FIW   +  R  HLI+WEKIC P+  GGLG+R  +++N A   K+ W++L+ 
Sbjct: 680  QLDKIARSFIWGSSEGNRKQHLIAWEKICTPKREGGLGIRKAKEMNVALLGKLGWRLLNT 739

Query: 1623 PNKPWVKILVDKYERNEKIPYC--KPKPTDSHVWKDVCKGLTLIREELIS----LIGNGR 1462
             +  WV+IL  K+   E    C    +   S  W+ +  G   IRE ++     ++G+GR
Sbjct: 740  HDALWVRILQKKFRVGELYDPCWMVSRGNWSPTWRSLILG---IREVVVPGTCWILGDGR 796

Query: 1461 QCSLWYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIE 1282
            +   W D WL D  L++     I +   E K   +      W  + ++  +S      + 
Sbjct: 797  RVRFWRDNWLLDQPLYELSTADIPEEIIEAKARDLWQHGTGWLTQLMEPYMSTHNSLRLA 856

Query: 1281 RMSIPYNNQCEDQWIWKWITSGMFSTKSFYA---NNCLPHDSDAGDWTWI*KIKAPQKIK 1111
             + I       D+  W     G FS KS Y     N +P  +    +  + ++  P++ +
Sbjct: 857  SVVIDEVTGARDRMSWSGSNDGQFSVKSAYTFLTKNVVPRQNMEALYRRVWRVAVPERTR 916

Query: 1110 TFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPG 931
             F+WLV H  + T    ++R + +S+VC +C   DE   H+ R CP A  +W  +     
Sbjct: 917  VFLWLVSHQVIMTNMERKRRHLSDSSVCLLCKNGDETILHVLRDCPAAAGLWLRIVTPSR 976

Query: 930  TERGTD-NLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIK 754
             +R  +  L  W+  N+    +   D +   LF   VW+ WK R   V  GE     D  
Sbjct: 977  RQRFFELPLLEWLYENLASDSSVSGD-QWPTLFALTVWWCWKWRCGYVF-GEVGKCRDRV 1034

Query: 753  RQIFLYSKDLKNIYLNLCTSEIP--REIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGG 580
              +   +K++   Y NL        R  K+I+W +  +  +KLN DG ++G  G A  GG
Sbjct: 1035 EFVRDKAKEVLAAYKNLRVHSPGGLRVEKQIAWHRPESNWVKLNTDGAARGNPGLATAGG 1094

Query: 579  IFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYK 400
            + R+E   W  G+   +G  S  L E+  +  GL IA +   + + VE DS   +  +  
Sbjct: 1095 VVRDEYGTWRGGFAINIGICSAPLAELWGVYYGLCIAWDRGFRRVEVEVDSECVVGFLQT 1154

Query: 399  DNTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPS 220
                 HPLS  +  C    ++   V F HVYREAN  AD LAN   +    +   E  P 
Sbjct: 1155 GIQDSHPLSFLVRLCYGFISRDWLVKFSHVYREANHLADGLANYAFSLPFGLHYFEVIPE 1214

Query: 219  GMCNILYGDQVGTTYPR 169
             + ++   D  G +  R
Sbjct: 1215 PVAHVFLDDCNGVSRTR 1231


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  215 bits (548), Expect = 2e-52
 Identities = 154/564 (27%), Positives = 260/564 (46%), Gaps = 18/564 (3%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            + +D++ + F+W    E++  HL+ W K+C P+  GGLG+R+ + +N A  +K+ W++L 
Sbjct: 64   NRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQ 123

Query: 1626 CPNKPWVKILVDKYERNE--KIPYCKPKPTDSHVWKDVCKGLTLIREELISLI-GNGRQC 1456
              N  W  +L  KY   E     +  PK + S  W+ +  GL  +    +  I G+G+Q 
Sbjct: 124  EKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQI 183

Query: 1455 SLWYDRWLGDISLHQRPGVIIMDMEREYKVERIIASD----GK-WDLRGIQSIISPDIVA 1291
              W DRW+       +P + + + ER    + ++A D    G+ WD   I    + +   
Sbjct: 184  RFWTDRWVSG-----KPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNTRL 238

Query: 1290 TIERMSIPYNNQCEDQWIWKWITSGMFSTKSFYAN---NCLPHDSDAGDWTWI*KIKAPQ 1120
             +  + +       D+  WK+   G FS +S Y     + +P  + A  +  + K++ P+
Sbjct: 239  ELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPE 298

Query: 1119 KIKTFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNH 940
            ++KTF+WLV +  + T     +R +  S VC VC    E+  H+ R CP    IW  V  
Sbjct: 299  RVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVP 358

Query: 939  DPGTERG--TDNLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSL 766
                ++G  + +L  W+ +N+  R     D     +F   +W+ WK R   +  GE+T  
Sbjct: 359  QR-RQQGFFSKSLFEWLYDNLGDRSG-CEDIPWSTIFAVIIWWGWKWRCGNIF-GENTKC 415

Query: 765  YDIKR-----QIFLYSKDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTS 601
             D  +      + +Y     N+ + +     PR  + I WV    G +K+N DG S+G  
Sbjct: 416  RDRVKFVKEWAVEVYRAHSGNVLVGITQ---PRVERMIGWVSPCVGWVKVNTDGASRGNP 472

Query: 600  GRAGYGGIFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMT 421
            G A  GG+ R+    W  G+   +G  S    E+  +  GL  A E  +  + +E DS  
Sbjct: 473  GLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEV 532

Query: 420  ALQLIYKDNTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVV 241
             +  +    +  HPLS  +  C     +   V   HVYREAN+ AD LAN   + +    
Sbjct: 533  IVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFH 592

Query: 240  ILERSPSGMCNILYGDQVGTTYPR 169
              +  P  M ++L  D +G+T PR
Sbjct: 593  SFDLVPDAMSSLLREDTLGSTRPR 616


>ref|XP_008221358.1| PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
          Length = 877

 Score =  215 bits (547), Expect = 2e-52
 Identities = 145/549 (26%), Positives = 240/549 (43%), Gaps = 3/549 (0%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            D++D++ K F+W        +HL++WE++C P+ +GGLG++ +  +N A  AK  W++L 
Sbjct: 371  DKLDQLNKKFLWGHTNNTSKIHLVNWEQVCKPKIVGGLGIKRSAWMNQALLAKTGWRLLQ 430

Query: 1626 CPNKPWVKILVDKYERNEKIPYCKPKPTDSHVWKDVCKGLTLIREELISLIGNGRQCSLW 1447
                 W +                                          +G+G     W
Sbjct: 431  HEQGLWSQ-----------------------------------------RVGSGDNVLFW 449

Query: 1446 YDRWLGDISLHQRPGVIIMDMEREYKVERI--IASDGKWDLRGIQSIISPDIVATIERMS 1273
             DRWL    L+Q     ++D+  E     +     +G WD   ++  +   I+  I  + 
Sbjct: 450  TDRWLSRGPLYQ---YALIDLSEEMLQLNVCDFLEEGVWDFNCLRECLPLHIIQLILSVH 506

Query: 1272 IPYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGDWTWI*KIKAPQKIKTFIWLV 1093
              +N    D+ IW++  +G FS KS Y++      S   DW +I  +  P K+KTF+W+V
Sbjct: 507  ASFNGSGADRCIWQFTPNGSFSVKSAYSSFLPTEASVKWDWQFIWGLLLPPKVKTFLWIV 566

Query: 1092 IHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTERGTD 913
             H +L T    QKRG+ +   C  C    +   H+F+ CP +  IW+ +     +     
Sbjct: 567  CHQKLLTNVQRQKRGLTQVPTCPKCDYPMKAIAHLFKDCPFSLAIWNYLQIGDNSSLDLM 626

Query: 912  NLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKRQIFLYS 733
            +   W+  N++ +R  Y       +F   +WFIWK R K V         ++++ I  Y+
Sbjct: 627  DFKEWLLRNLQSKRKVYNGLPWPLVFALYLWFIWKWRCKGVFYQRFVMPGNLQQLILQYA 686

Query: 732  KDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGGIFRNEDDNW 553
             +  N       S +P  + ++ W+    G  K+N DG     S   G GG+ R+    W
Sbjct: 687  LEWFNATKPPPPSYVP-YVVQLHWIAPTYGVCKINTDGSRNSVSRFIGVGGLLRDNYGAW 745

Query: 552  IIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKDNTTLHPLS 373
            I G+   LG GS    ++  I  GL +A E + + +  E+DS  A+ L+     + HPL 
Sbjct: 746  IKGFSVNLGVGSVLEAKLWGIFLGLHLAWESSFRFVEAESDSSVAVALLSSSTISTHPLF 805

Query: 372  NFLMDCRSLATQLRC-VSFRHVYREANQAADFLANIGVARNDFVVILERSPSGMCNILYG 196
            + LM C  L  Q     S +H++RE N AAD LA+        V      P+ + N L  
Sbjct: 806  S-LMSCCKLKVQAGWRFSIKHIFREQNVAADVLASKSSEFGPGVRYFTEVPAFLVNCLAV 864

Query: 195  DQVGTTYPR 169
            D +G +  R
Sbjct: 865  DAIGVSRSR 873


>ref|XP_009124282.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 1011

 Score =  212 bits (539), Expect = 2e-51
 Identities = 162/565 (28%), Positives = 255/565 (45%), Gaps = 19/565 (3%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            +++D + + F+W       G HL+SWEKIC P++ GGLG+R +R +N A  AK+ W++L 
Sbjct: 460  EKLDSLSRSFVWGS-----GQHLVSWEKICKPKAEGGLGIRGSRDMNKALIAKVGWRLLR 514

Query: 1626 CPNKPWVKILVDKYERNE--KIPYCKPKPTDSHVWKDVCKGLTLIREELIS----LIGNG 1465
                 W ++L  KY       + +   +   S  W  V  G   IRE +++     IGNG
Sbjct: 515  DTESLWARVLRSKYNVGSIHDLSWTGRRSNGSSTWSSVVLG---IREVVMTGHSWAIGNG 571

Query: 1464 RQCSLWYDRWLGDISLHQRPGVIIMDMEREYK---VERIIASDGKWDLRGIQSIISPDIV 1294
            R    W DRWL +  L     V I ++   Y+   V  +    G WDL  I   ++ +  
Sbjct: 572  RDIKFWTDRWLSNQPLSS---VTIGELPEGYEDVTVREMWVVGGGWDLAHIAPFVTDETR 628

Query: 1293 ATIERMSIPYNNQCEDQWIWKWITSGMFSTKSFYA---NNCLPHDSDAGDWTWI*KIKAP 1123
              +  + +   N  ED+  W    +G F+ KS YA    +  P  +    +  +  + AP
Sbjct: 629  LELAAVVVDTVNDSEDRLAWSQTNNGQFTVKSAYALITRDDAPRPNMEYLFRRMWHVVAP 688

Query: 1122 QKIKTFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVN 943
            ++++ F+WLV +  + T     +R +  + VC VC    E   H+ R CP  + IW    
Sbjct: 689  ERVRMFLWLVGNQAIMTNAERYRRHLSGTDVCQVCKGGIETILHVLRDCPAMRGIWDRFV 748

Query: 942  HDPGTERGTD---NLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHT 772
              P  +R T     L  W+  N+       ++      F   VW+ WK R   +  G+++
Sbjct: 749  --PAVKRQTFFSMPLLEWLYKNLSDNGTG-SEIPWPTTFALAVWWGWKWRCGNIF-GKNS 804

Query: 771  SLYDIKRQIFLYSKDLKNIYLNLC----TSEIPREIKEISWVKLRNGSLKLNADGCSKGT 604
               D  R  FL +   + +  N      ++   R  + + W   R+G +KLN DG S G 
Sbjct: 805  LWRD--RVGFLRNLAKEVMSANEAEKGNSNVDHRTERMVGWAPPRSGWMKLNTDGSSHGN 862

Query: 603  SGRAGYGGIFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSM 424
             G A  GG+ RN +  W  G+   +G     L E+  +  GL  A E  I+ L +E DS 
Sbjct: 863  PGAATAGGVLRNGEGEWCGGFALNIGRCGALLAELWGVYYGLVAAWEKGIRRLELEVDSQ 922

Query: 423  TALQLIYKDNTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFV 244
              ++ +       H LS  +  C  L  +   V   HVYREAN+ AD LAN+  +     
Sbjct: 923  VVVEFLTIGIGDTHSLSFLVRMCHGLLKKDWLVHIVHVYREANRLADGLANLAFSLPFGF 982

Query: 243  VILERSPSGMCNILYGDQVGTTYPR 169
              L+ +P  +  +L GD VG   PR
Sbjct: 983  HRLDETPIEVVVLLQGDVVGPPRPR 1007


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  209 bits (532), Expect = 1e-50
 Identities = 150/563 (26%), Positives = 255/563 (45%), Gaps = 17/563 (3%)
 Frame = -2

Query: 1806 DEIDKVVKDFIWKGRQERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLH 1627
            D +D+  + F+W    E++  HL+SW KIC P++ GG+GLRS R +N A  AK+ W++L 
Sbjct: 679  DTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQ 738

Query: 1626 CPNKPWVKILVDKYERN--EKIPYCKPKPTDSHVWKDVCKGLTLIREELISLI-GNGRQC 1456
                 W +++  KY+    +   + KP+P  S  W+ V  GL  +  + +  + G+G   
Sbjct: 739  DKESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTI 798

Query: 1455 SLWYDRWLGDISLHQRPGVIIMDMEREYKVERIIASDGKWDLRGIQSIISPDIVATIERM 1276
              W DRWL    L +    +I + ER             W+L  +   +   +   +  +
Sbjct: 799  RFWLDRWLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSV 858

Query: 1275 SIPYNNQCEDQWIWKWITSGMFSTKSFYANNCLPHDSDAGD-------WTWI*KIKAPQK 1117
             +       D+  WK    G F+ +S Y+        D GD       +  I K+  P++
Sbjct: 859  VVQVFLGNGDEISWKGTQDGAFTVRSAYS----LLQGDVGDRPNMGSFFNRIWKLITPER 914

Query: 1116 IKTFIWLVIHGRLPTRTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNV--- 946
            ++ FIWLV    + T     +R + E+ +C VC+  +E   H+ R CP  + IW  +   
Sbjct: 915  VRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPL 974

Query: 945  --NHDPGTERGTDNLHLWIKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHT 772
              +H    E  + +L  W+  N++P +  +       LF   +W+ WK R   V  GE  
Sbjct: 975  RRHH----EFFSQSLLEWLFTNMDPVKGIWP-----TLFGMGIWWAWKWRCCDVF-GERK 1024

Query: 771  SLYDIKRQIFLYSKDLKNIYLNLCTSEI--PREIKEISWVKLRNGSLKLNADGCSKGTSG 598
               D  + I   +++++ +++    +     R  + I W    +G +K+  DG S+G  G
Sbjct: 1025 ICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHG 1084

Query: 597  RAGYGGIFRNEDDNWIIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTA 418
             A  GG  RN    W+ G+   +G+ +  L E+     GL IA +   + + ++ D    
Sbjct: 1085 LAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLV 1144

Query: 417  LQLIYKDNTTLHPLSNFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVI 238
            +  +    +  HPLS  +  C+   T+   V   HVYREAN+ AD LAN        +  
Sbjct: 1145 VGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLGLHC 1204

Query: 237  LERSPSGMCNILYGDQVGTTYPR 169
             +  P G+  +L  D  GT +PR
Sbjct: 1205 FDACPEGVRLLLLADVNGTEFPR 1227


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  204 bits (519), Expect = 4e-49
 Identities = 150/548 (27%), Positives = 251/548 (45%), Gaps = 18/548 (3%)
 Frame = -2

Query: 1758 ERRGLHLISWEKICIPRSMGGLGLRSTRQLNDAFSAKMAWQVLHCPNKPWVKILVDKYER 1579
            +++  HL+ W K+C P+  GGLG+R+ + +N A  +K+ W++L   N  W  +L  KY  
Sbjct: 189  KKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHV 248

Query: 1578 NE--KIPYCKPKPTDSHVWKDVCKGLTLIREELISLI-GNGRQCSLWYDRWLGDISLHQR 1408
             E     +  PK + S  W+ +  GL  +    +  I G+G+Q   W DRW+       +
Sbjct: 249  GEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSG-----K 303

Query: 1407 PGVIIMDMEREYKVERIIASD----GK-WDLRGIQSIISPDIVATIERMSIPYNNQCEDQ 1243
            P + + + ER    + ++A D    G+ WD   I    + +    +  + +       D+
Sbjct: 304  PLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDR 363

Query: 1242 WIWKWITSGMFSTKSFYAN---NCLPHDSDAGDWTWI*KIKAPQKIKTFIWLVIHGRLPT 1072
              WK+   G FS +S Y     + +P  + A  +  + K++ P+++KTF+WLV +  + T
Sbjct: 364  LSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMT 423

Query: 1071 RTLLQKRGIVESTVCHVCHQEDENEDHMFRFCPNAKKIWSNVNHDPGTERG--TDNLHLW 898
                 +R +  S VC VC    E+  H+ R CP    IW  V      ++G  + +L  W
Sbjct: 424  EEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQR-RQQGFFSKSLFEW 482

Query: 897  IKNNVEPRRNRYADSE*VNLFLTCVWFIWKRRNKQVIAGEHTSLYDIKR-----QIFLYS 733
            + +N+  R     D     +F   +W+ WK R   +  GE+T   D  +      + +Y 
Sbjct: 483  LYDNLGDRSG-CEDIPWSTIFAVIIWWGWKWRCGNIF-GENTKCRDRVKFVKEWAVEVYR 540

Query: 732  KDLKNIYLNLCTSEIPREIKEISWVKLRNGSLKLNADGCSKGTSGRAGYGGIFRNEDDNW 553
                N+ + +     PR  + I WV    G +K+N DG S+G  G A  GG+ R+    W
Sbjct: 541  AHSGNVLVGITQ---PRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAW 597

Query: 552  IIGYCGYLGTGSNTLTEIAAIKEGLKIAIEMNIQDLVVEADSMTALQLIYKDNTTLHPLS 373
              G+   +G  S    E+  +  GL  A E  +  + +E DS   +  +    +  HPLS
Sbjct: 598  CGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLS 657

Query: 372  NFLMDCRSLATQLRCVSFRHVYREANQAADFLANIGVARNDFVVILERSPSGMCNILYGD 193
              +  C     +   V   HVYREAN+ AD LAN   + +      +  P  M ++L  D
Sbjct: 658  FLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLRED 717

Query: 192  QVGTTYPR 169
             +G+T PR
Sbjct: 718  TLGSTRPR 725