BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00001725
         (4302 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2263   0.0  
ref|XP_008801262.1| PREDICTED: DNA-directed RNA polymerase II su...  2258   0.0  
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...  2252   0.0  
ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II su...  2251   0.0  
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su...  2228   0.0  
ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II su...  2226   0.0  
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su...  2226   0.0  
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...  2224   0.0  
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid...  2224   0.0  
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su...  2221   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  2214   0.0  
ref|XP_008644643.1| PREDICTED: DNA-directed RNA polymerase II su...  2212   0.0  
ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Moru...  2210   0.0  
ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II su...  2210   0.0  
ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II su...  2208   0.0  
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i...  2207   0.0  
ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II su...  2206   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  2206   0.0  
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su...  2206   0.0  
ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II su...  2204   0.0  

>ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Elaeis guineensis]
          Length = 1187

 Score = 2263 bits (5865), Expect = 0.0
 Identities = 1118/1166 (95%), Positives = 1140/1166 (97%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA+IEIRPESQHNPGRQSDFVETI
Sbjct: 22   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESANIEIRPESQHNPGRQSDFVETI 81

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTY+APLYVDVTK++IKKGHDCEEV 
Sbjct: 82   YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVIKKGHDCEEVT 141

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQEF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 142  ETQEFPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 201

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSM E+Q+RPAS+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 202  MSTNHVYVFKKRQPNKYAYVAEVRSMPESQSRPASTMFVRMLSRTSAKGGSSGQYIRATL 261

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 262  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 321

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 322  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRR 381

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
            PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 382  PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 441

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 442  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 501

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEW TENFEEISPAVI
Sbjct: 502  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWGTENFEEISPAVI 561

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA+KIFVNG WVGIHRNPDLLV+TLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 562  PQASKIFVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 621

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVE QRLLIKKK I+ALQQRE+PEEGWHDLVAKGF                 INDL
Sbjct: 622  RPLFIVENQRLLIKKKDIQALQQRESPEEGWHDLVAKGFIEYIDTEEEETTMIAMTINDL 681

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 682  VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 741

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
Sbjct: 742  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 801

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 802  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 861

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTS+RHSESGMVDQVLLTTNADGLRFVK
Sbjct: 862  RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSVRHSESGMVDQVLLTTNADGLRFVK 921

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ
Sbjct: 922  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 981

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMI
Sbjct: 982  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 1041

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH
Sbjct: 1042 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 1101

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1102 FLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1161

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKKGA 529
            LMAMAIAPRM TKE+KP+K+QKKKGA
Sbjct: 1162 LMAMAIAPRMFTKEMKPAKDQKKKGA 1187


>ref|XP_008801262.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Phoenix
            dactylifera]
          Length = 1187

 Score = 2258 bits (5852), Expect = 0.0
 Identities = 1114/1166 (95%), Positives = 1139/1166 (97%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA+IEIRPESQHNPGRQSDFVETI
Sbjct: 22   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESANIEIRPESQHNPGRQSDFVETI 81

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTY+APLYVDVTK++IKKGHDCEEV 
Sbjct: 82   YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVIKKGHDCEEVT 141

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQEF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 142  ETQEFPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 201

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSM E+Q+RPAS+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 202  MSTNHVYVFKKRQPNKYAYVAEVRSMPESQSRPASTMFVRMLSRTSAKGGSSGQYIRATL 261

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 262  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 321

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 322  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRR 381

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
            PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 382  PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 441

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 442  TSGLKYSLATGNWGQANQAGARAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 501

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEW TENFEEISPAVI
Sbjct: 502  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWGTENFEEISPAVI 561

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA+KIFVNG WVGIHRNPDLLV+TLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 562  PQASKIFVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 621

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVE QRLLIKK+HI+ALQQRE+PEEGWHDLVAKGF                 INDL
Sbjct: 622  RPLFIVENQRLLIKKRHIQALQQRESPEEGWHDLVAKGFIEYIDTEEEETTMIAMTINDL 681

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 682  VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 741

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
Sbjct: 742  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 801

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 802  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 861

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTS+RHSESGMVDQVLLTTNADGLRFVK
Sbjct: 862  RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSVRHSESGMVDQVLLTTNADGLRFVK 921

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ
Sbjct: 922  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 981

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMI
Sbjct: 982  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 1041

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            F+GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH
Sbjct: 1042 FIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 1101

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1102 FLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1161

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKKGA 529
            LMAMAIAPRM +KEVK +K+QKK+GA
Sbjct: 1162 LMAMAIAPRMFSKEVKAAKDQKKRGA 1187


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score = 2252 bits (5836), Expect = 0.0
 Identities = 1116/1167 (95%), Positives = 1138/1167 (97%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDF+ETI
Sbjct: 27   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLETI 86

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKRIIKKGHD EEV 
Sbjct: 87   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVT 146

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQEFTKVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 147  ETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 206

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP SSMFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 207  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATL 266

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 267  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 326

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 327  IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 386

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
            PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 387  PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 446

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 447  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 506

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEWSTENFEEISPAVI
Sbjct: 507  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 566

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQ+TKIFVNGCWVGIHRNPDLLVKTLRQLRRQ+DVNTEVGVIRDIRLKELRLYTDYGRCS
Sbjct: 567  PQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 626

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKK+ IRALQ RE+PE+ GWHDLV+KGF                 IND
Sbjct: 627  RPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIND 686

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            L++AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 687  LISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 746

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 747  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 806

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG
Sbjct: 807  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 866

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI QDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV
Sbjct: 867  TRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 926

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 927  KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 986

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AM
Sbjct: 987  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1046

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1047 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1106

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1107 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1166

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTKEVKP K+QKKKGA
Sbjct: 1167 ELMAMAIAPRMLTKEVKPPKDQKKKGA 1193


>ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo
            nucifera]
          Length = 1189

 Score = 2251 bits (5833), Expect = 0.0
 Identities = 1116/1167 (95%), Positives = 1137/1167 (97%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDF+ETI
Sbjct: 23   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLETI 82

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHDCEEV 
Sbjct: 83   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVT 142

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQEF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 143  ETQEFAKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 202

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP SSMFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 203  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATL 262

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 263  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 322

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 323  IGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 382

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 383  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 442

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 443  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 502

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEWSTENFEEISPAVI
Sbjct: 503  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 562

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVGIHRNP+LLVKTLRQLRRQ+DVNTEVGVIRDIRLKELRLYTDYGRCS
Sbjct: 563  PQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 622

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKKK IRALQQRE+ EE GWHDLVAKGF                 IND
Sbjct: 623  RPLFIVEKQRLLIKKKDIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTIND 682

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 683  LVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 742

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 743  TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 802

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+RENTMGMRHGSYDKLDDDGLAPPG
Sbjct: 803  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPSRENTMGMRHGSYDKLDDDGLAPPG 862

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI QDDSQGQ+SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV
Sbjct: 863  TRVSGEDVIIGKTTPIAQDDSQGQSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 922

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 923  KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 982

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AM
Sbjct: 983  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAM 1042

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1043 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1102

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1103 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1162

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELM+MAIAPRMLTKEVKPSK+QKKKGA
Sbjct: 1163 ELMSMAIAPRMLTKEVKPSKDQKKKGA 1189


>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
            brachyantha]
          Length = 1184

 Score = 2228 bits (5774), Expect = 0.0
 Identities = 1097/1164 (94%), Positives = 1127/1164 (96%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQ++F ET+
Sbjct: 21   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETL 80

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            +KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTY+APLYVDV+ R++KKGHDCEEV 
Sbjct: 81   HKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVT 140

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ET E+ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 141  ETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 200

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAENQNRPASSMFVRMLSR  AKGGSSGQYIRATL
Sbjct: 201  MSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATL 260

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 261  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 320

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+CALGRR
Sbjct: 321  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRR 380

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 381  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 440

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 441  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 500

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 501  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 560

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 561  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 620

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVE QRLLIKKKHIRALQQRE PEEGWHDLVAKGF                 INDL
Sbjct: 621  RPLFIVENQRLLIKKKHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDL 680

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            VNAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 681  VNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 740

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
Sbjct: 741  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 800

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 801  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 860

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDD+QGQA+RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVK
Sbjct: 861  RVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 920

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 921  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ 980

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LSAMI
Sbjct: 981  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMI 1040

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 
Sbjct: 1041 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAF 1100

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1101 FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1160

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKK 535
            LMAMAIAPRMLT + K  K+QK++
Sbjct: 1161 LMAMAIAPRMLTNDNKTGKDQKRR 1184


>ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amborella
            trichopoda] gi|548863150|gb|ERN20505.1| hypothetical
            protein AMTR_s00068p00181410 [Amborella trichopoda]
          Length = 1190

 Score = 2226 bits (5768), Expect = 0.0
 Identities = 1099/1166 (94%), Positives = 1131/1166 (96%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYF+EKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQ+DFVETI
Sbjct: 21   AWAVISAYFDEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQADFVETI 80

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EE+A
Sbjct: 81   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDHEELA 140

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            E QE TKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 141  EQQELTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 200

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QN+P SSMFVRMLSRTS+KGGSSGQYIRATL
Sbjct: 201  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNKPPSSMFVRMLSRTSSKGGSSGQYIRATL 260

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRA+IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 261  PYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 320

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLL+CALGRR
Sbjct: 321  IGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLVCALGRR 380

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
            PEDDRDHYGNKRLDLAGPLLG LFR +FRKLTRDVRSYVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 381  PEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 440

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 441  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQL 500

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEWSTENFEEISPAVI
Sbjct: 501  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 560

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVGIHRNP+LLVKTLRQLRRQ+DVNTEVGVIRDIRLKELRLYTDYGRCS
Sbjct: 561  PQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 620

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVEKQRLLIKK  IRALQQRE+P+EGWHDLVAKGF                 I+DL
Sbjct: 621  RPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFIEYVDTEEEETTMISMTISDL 680

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            V+AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 681  VSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 740

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQ
Sbjct: 741  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQ 800

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 801  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 860

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKT+PI Q++ QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK
Sbjct: 861  RVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 920

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ
Sbjct: 921  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 980

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI
Sbjct: 981  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 1040

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH
Sbjct: 1041 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 1100

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDI+QVHIPYACKLLFQE
Sbjct: 1101 FLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIIQVHIPYACKLLFQE 1160

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKKGA 529
            LMAMAIAPRM TKE K  K+ KKKGA
Sbjct: 1161 LMAMAIAPRMFTKEEKKPKDHKKKGA 1186


>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Brachypodium
            distachyon]
          Length = 1228

 Score = 2226 bits (5767), Expect = 0.0
 Identities = 1093/1164 (93%), Positives = 1128/1164 (96%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQ++F ET+
Sbjct: 65   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETL 124

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            +KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTY+APLYVDV+ R++KKGHDCEEV 
Sbjct: 125  HKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHDCEEVT 184

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ET E+ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYF+INGSEKVLIAQEK
Sbjct: 185  ETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLIAQEK 244

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSR  AKGGSSGQYIRATL
Sbjct: 245  MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATL 304

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 305  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 364

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+CALGRR
Sbjct: 365  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRR 424

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 425  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 484

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 485  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 544

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 545  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 604

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 605  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 664

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIV+ QRLLIKKKHIRALQQRE P+EGWHDLVAKGF                 INDL
Sbjct: 665  RPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETTMISMTINDL 724

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            V+AR NP+EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 725  VSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 784

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
Sbjct: 785  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 844

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 845  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 904

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDD+QGQA+RY++RDHSTSLRHSESGMVDQVLLTTNADGLRFVK
Sbjct: 905  RVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 964

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 965  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ 1024

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMI
Sbjct: 1025 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 1084

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 
Sbjct: 1085 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAF 1144

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1145 FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1204

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKK 535
            LMAMAIAPRMLT ++K  K+QKK+
Sbjct: 1205 LMAMAIAPRMLTHDIKSGKDQKKR 1228


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 2224 bits (5762), Expect = 0.0
 Identities = 1093/1164 (93%), Positives = 1127/1164 (96%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQ++F ET+
Sbjct: 55   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETL 114

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            +KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTY+APLYVDV+ R++KKGHDCEEV 
Sbjct: 115  HKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVT 174

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ET E+ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 175  ETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 234

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAENQNRPASSMFVRMLSR  AKGGSSGQYIRATL
Sbjct: 235  MSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATL 294

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 295  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 354

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+CALGRR
Sbjct: 355  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRR 414

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 415  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 474

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 475  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 534

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 535  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 594

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 595  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 654

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVE QRLLIKK+HIRALQQRE PEEGWHDLVAKGF                 INDL
Sbjct: 655  RPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDL 714

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            + AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 715  IGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 774

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
Sbjct: 775  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 834

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 835  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 894

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDD+QGQA+RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVK
Sbjct: 895  RVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 954

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 955  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ 1014

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMI
Sbjct: 1015 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 1074

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 
Sbjct: 1075 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAF 1134

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1135 FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1194

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKK 535
            LMAMAIAPRMLT++ K  K+QKK+
Sbjct: 1195 LMAMAIAPRMLTQDNKTGKDQKKR 1218


>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
            gi|125545063|gb|EAY91202.1| hypothetical protein
            OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score = 2224 bits (5762), Expect = 0.0
 Identities = 1093/1164 (93%), Positives = 1127/1164 (96%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQ++F ET+
Sbjct: 59   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETL 118

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            +KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTY+APLYVDV+ R++KKGHDCEEV 
Sbjct: 119  HKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVT 178

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ET E+ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 179  ETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 238

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAENQNRPASSMFVRMLSR  AKGGSSGQYIRATL
Sbjct: 239  MSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATL 298

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 299  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 358

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+CALGRR
Sbjct: 359  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRR 418

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 419  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 478

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 479  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 538

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 539  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 598

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 599  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 658

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVE QRLLIKK+HIRALQQRE PEEGWHDLVAKGF                 INDL
Sbjct: 659  RPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDL 718

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            + AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 719  IGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 778

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
Sbjct: 779  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 838

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 839  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 898

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDD+QGQA+RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVK
Sbjct: 899  RVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 958

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 959  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ 1018

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMI
Sbjct: 1019 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 1078

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 
Sbjct: 1079 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAF 1138

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1139 FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1198

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKK 535
            LMAMAIAPRMLT++ K  K+QKK+
Sbjct: 1199 LMAMAIAPRMLTQDNKTGKDQKKR 1222


>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Setaria
            italica]
          Length = 1226

 Score = 2221 bits (5754), Expect = 0.0
 Identities = 1090/1164 (93%), Positives = 1127/1164 (96%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQ++F ET+
Sbjct: 63   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETL 122

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            +KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTY+APLYVDV+ R++KKGHDCEEV 
Sbjct: 123  HKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVT 182

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ET ++ KVFIGKVPIMLRSSYCTLYQ SEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 183  ETSDYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 242

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNKF+YVAEVRSMAENQNRPASSMFVRMLSR  AKGGSSGQYIRATL
Sbjct: 243  MSTNHVYVFKKRQPNKFSYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATL 302

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 303  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 362

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+CALGRR
Sbjct: 363  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRR 422

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 423  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 482

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 483  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 542

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 543  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 602

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 603  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 662

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVE QRLLIKK HIRALQQRE P+EGWH+LV+KG+                 INDL
Sbjct: 663  RPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMISMTINDL 722

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
            +NAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 723  INARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 782

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQ
Sbjct: 783  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQ 842

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 843  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 902

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDD+QGQASRY++RDHSTSLRHSESGMVDQVLLTTNADGLRFVK
Sbjct: 903  RVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 962

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 963  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ 1022

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMI
Sbjct: 1023 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 1082

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 
Sbjct: 1083 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAF 1142

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1143 FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1202

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKK 535
            LMAMAIAPRMLT ++K  K+QKK+
Sbjct: 1203 LMAMAIAPRMLTHDMKTGKDQKKR 1226


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 2214 bits (5737), Expect = 0.0
 Identities = 1094/1167 (93%), Positives = 1129/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ETI
Sbjct: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 327

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 447

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVGIHR+PD+LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 568  PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKKK I ALQQRE+ EE GWHDLVAKGF                 I+D
Sbjct: 628  RPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHD 687

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 688  LVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 867

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI Q+++QGQ++RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFV
Sbjct: 868  TRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFV 927

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AM
Sbjct: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1107

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1108 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTK+VKP+K+QKKKGA
Sbjct: 1168 ELMAMAIAPRMLTKDVKPTKDQKKKGA 1194


>ref|XP_008644643.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Zea mays]
          Length = 1229

 Score = 2212 bits (5731), Expect = 0.0
 Identities = 1088/1164 (93%), Positives = 1123/1164 (96%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQ++F ET+
Sbjct: 66   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETL 125

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            +KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTY+APLYVDV+ R++KKGHDCEEV 
Sbjct: 126  HKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVT 185

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ET E+ KVFIGKVPIMLRSSYCTLYQ SEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 186  ETAEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 245

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSR  AKGGSSGQYIRATL
Sbjct: 246  MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATL 305

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 306  PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 365

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+CAL RR
Sbjct: 366  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALSRR 425

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 426  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 485

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 486  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 545

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 546  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 605

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTDYGRCS
Sbjct: 606  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 665

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXXXINDL 2047
            RPLFIVE QRLLIKK HIRALQQRE P+EGWH+LV+KG+                 INDL
Sbjct: 666  RPLFIVEGQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMISMTINDL 725

Query: 2046 VNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 1867
             NAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 726  QNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 785

Query: 1866 NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 1687
            NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ
Sbjct: 786  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 845

Query: 1686 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 1507
            SSIDRGFFRSLFFRSYRDEEKKMGTL+KE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGT
Sbjct: 846  SSIDRGFFRSLFFRSYRDEEKKMGTLIKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGT 905

Query: 1506 RVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 1327
            RVSGEDVIIGKTSPIPQDD+QGQASRY++RDHST+LRHSESGMVDQVLLTTNADGLRFVK
Sbjct: 906  RVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTALRHSESGMVDQVLLTTNADGLRFVK 965

Query: 1326 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 1147
            VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 966  VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ 1025

Query: 1146 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 967
            LIECIMGKVAA MGKEGDATPFTDVTVDNISKALHKC YQMRGFETMYNGHTGR+L+AMI
Sbjct: 1026 LIECIMGKVAAQMGKEGDATPFTDVTVDNISKALHKCNYQMRGFETMYNGHTGRKLTAMI 1085

Query: 966  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 787
            FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 
Sbjct: 1086 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAF 1145

Query: 786  FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQE 607
            FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQE
Sbjct: 1146 FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1205

Query: 606  LMAMAIAPRMLTKEVKPSKNQKKK 535
            LMAMAIAPRMLT ++K  K+QKK+
Sbjct: 1206 LMAMAIAPRMLTHDMKTGKDQKKR 1229


>ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
            gi|587931023|gb|EXC18122.1| DNA-directed RNA polymerase
            II subunit [Morus notabilis]
          Length = 1193

 Score = 2210 bits (5727), Expect = 0.0
 Identities = 1093/1168 (93%), Positives = 1127/1168 (96%), Gaps = 2/1168 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFVETI
Sbjct: 26   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFVETI 85

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 86   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 145

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 146  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 205

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S+MFVRMLSRTS+KGGSSGQYIRATL
Sbjct: 206  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 265

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIRA+IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 266  PYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 325

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVT+EKRIKYAKEILQKEMLPHVG GE+CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 326  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCETKKAYYFGYIIHRLLLCALGRR 385

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 386  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 445

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 446  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 505

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 506  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 565

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVGIHR+PD+LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 566  PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 625

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKK+ IRALQQRE PEE GWHDLV+ GF                 IND
Sbjct: 626  RPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGFIEYIDTEEEETTMISMTIND 685

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 686  LVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 745

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 746  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 805

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QS+IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 806  QSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 865

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQ-ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 1333
            TRVSGEDVIIGKT+PI QD++QGQ ASRYTRRDHS SLRHSE+G+VDQVLLTTNADGLRF
Sbjct: 866  TRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRHSENGIVDQVLLTTNADGLRF 925

Query: 1332 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 1153
            VKVR+RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI
Sbjct: 926  VKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 985

Query: 1152 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSA 973
            GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+A
Sbjct: 986  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1045

Query: 972  MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 793
            MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA
Sbjct: 1046 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1105

Query: 792  AHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLF 613
            AHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLF
Sbjct: 1106 AHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1165

Query: 612  QELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            QELMAMAIAPRMLTK+VKP  +QKKKGA
Sbjct: 1166 QELMAMAIAPRMLTKDVKPLNDQKKKGA 1193


>ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha
            curcas]
          Length = 1193

 Score = 2210 bits (5726), Expect = 0.0
 Identities = 1092/1167 (93%), Positives = 1126/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q DF ETI
Sbjct: 27   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETI 86

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 87   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 146

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 147  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 206

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP SSMFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 207  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATL 266

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 267  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 326

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 327  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 386

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+DVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 387  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRSYVQKCVDNGKDVNLQFAIKAKTI 446

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 447  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 506

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 507  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 566

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVGIHR+PD+LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 567  PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 626

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKKK I ALQQRE+ EE GWHDLVAKGF                 I+D
Sbjct: 627  RPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHD 686

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 687  LVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 746

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 747  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 806

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 807  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 866

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI Q+++QGQ++RYTRRDHS SLRHSE+G+VDQVLLTTNADGLRFV
Sbjct: 867  TRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFV 926

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 927  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 986

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AM
Sbjct: 987  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1046

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1047 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1106

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1107 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1166

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTK++KP K+ KKKGA
Sbjct: 1167 ELMAMAIAPRMLTKDIKPVKDHKKKGA 1193


>ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1191

 Score = 2208 bits (5721), Expect = 0.0
 Identities = 1090/1167 (93%), Positives = 1128/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ETI
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKI+FGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 85   YKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEK
Sbjct: 145  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEK 204

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+A+VAEVRSMAE+QNRP S+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 205  MSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265  PYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDY 324

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 325  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRR 384

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 385  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 444

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNG WVGIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 565  PQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKKK I+ LQQRE+PEE GWHDLVAKG+                 IND
Sbjct: 625  RPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEEEETTMISMTIND 684

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 685  LVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 744

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMN
Sbjct: 745  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMN 804

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPG
Sbjct: 805  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPG 864

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI QDD+QGQASRYTR+DHSTSLRHSE+GMVDQVLLTTNADGLRFV
Sbjct: 865  TRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFV 924

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 925  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 984

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM
Sbjct: 985  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1044

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1045 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1104

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1105 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1164

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTK+VK +K+QKKKGA
Sbjct: 1165 ELMAMAIAPRMLTKDVKQAKDQKKKGA 1191


>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
            polymerase family protein isoform 1 [Theobroma cacao]
          Length = 1189

 Score = 2207 bits (5720), Expect = 0.0
 Identities = 1093/1167 (93%), Positives = 1126/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ETI
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 85   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 145  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 204

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 205  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 324

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG++CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 325  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDFCETKKAYYFGYIIHRLLLCALGRR 384

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 385  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 444

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVG+HRNPD+LV TLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 565  PQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKKK I ALQQRE+PE+ GWHDLVAKGF                 IND
Sbjct: 625  RPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 684

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 685  LVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 744

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 745  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 804

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 805  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 864

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI Q+++QGQASRY+RRDHS SLRHSE+G+VDQVLLTTNADGLRFV
Sbjct: 865  TRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFV 924

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 925  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 984

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLSAM
Sbjct: 985  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLSAM 1044

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1045 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1104

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQV+IPYACKLLFQ
Sbjct: 1105 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1164

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTKE  P K+QKKKGA
Sbjct: 1165 ELMAMAIAPRMLTKE--PPKDQKKKGA 1189


>ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
            [Nicotiana sylvestris]
          Length = 1191

 Score = 2206 bits (5716), Expect = 0.0
 Identities = 1089/1167 (93%), Positives = 1128/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ETI
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKI+FGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 85   YKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEK
Sbjct: 145  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEK 204

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+A+VAEVRSMAE+QNRP S+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 205  MSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265  PYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDY 324

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 325  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRR 384

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 385  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 444

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNG WVGIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 565  PQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKKK I+ LQQRE+PEE GWHDLVAKG+                 IND
Sbjct: 625  RPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEEEETTMISMTIND 684

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 685  LVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 744

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMN
Sbjct: 745  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMN 804

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPG
Sbjct: 805  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPG 864

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI QDD+QGQASRYTR+DHSTSLRHSE+GMVDQVLLTTNADGLRFV
Sbjct: 865  TRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFV 924

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 925  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 984

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM
Sbjct: 985  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1044

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1045 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1104

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKK+SFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1105 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFECRGCKNKTDIVQVHIPYACKLLFQ 1164

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTK+VK +K+QKKKGA
Sbjct: 1165 ELMAMAIAPRMLTKDVKQAKDQKKKGA 1191


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 2206 bits (5716), Expect = 0.0
 Identities = 1086/1167 (93%), Positives = 1128/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ETI
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 85   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 145  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 204

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 205  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265  PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY 324

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 325  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 384

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 385  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 444

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVGIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 565  PQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIK+K I+ALQQRE PE+ GWHDLVAKGF                 IND
Sbjct: 625  RPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 684

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV+AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 685  LVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 744

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 745  TNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 804

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 805  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 864

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDV+IGKT+PI QD++QG A+RYTRRDHSTSLRHSE+GMVDQVLLTTNADGLRFV
Sbjct: 865  TRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFV 924

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIG
Sbjct: 925  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIG 984

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL++M
Sbjct: 985  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSM 1044

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1045 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1104

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1105 HFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1164

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELM+MAIAPRMLTK+VK +K++KKK A
Sbjct: 1165 ELMSMAIAPRMLTKDVKQAKDKKKKQA 1191


>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
            raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2 [Gossypium
            raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
            polymerase II subunit RPB2 [Gossypium arboreum]
            gi|763801668|gb|KJB68623.1| hypothetical protein
            B456_010G255400 [Gossypium raimondii]
            gi|763801669|gb|KJB68624.1| hypothetical protein
            B456_010G255400 [Gossypium raimondii]
          Length = 1189

 Score = 2206 bits (5715), Expect = 0.0
 Identities = 1092/1167 (93%), Positives = 1124/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ETI
Sbjct: 25   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 85   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 145  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 204

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 205  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 324

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 325  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRR 384

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 385  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 444

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNGCWVG+HRNPD+LV TLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 565  PQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQRLLIKKK I ALQQRE PE+ GWHDLVAKGF                 IND
Sbjct: 625  RPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 684

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 685  LVQARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 744

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 745  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 804

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R  TMGMRHGSYDKLDDDGLAPPG
Sbjct: 805  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSYDKLDDDGLAPPG 864

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI Q+++QGQASRY++RDHS SLRHSE+G+VDQVLLTTNADGLRFV
Sbjct: 865  TRVSGEDVIIGKTTPISQEEAQGQASRYSKRDHSISLRHSETGIVDQVLLTTNADGLRFV 924

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 925  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 984

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRL+AM
Sbjct: 985  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAM 1044

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1045 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1104

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1105 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1164

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTKE  P K+QKKKGA
Sbjct: 1165 ELMAMAIAPRMLTKE--PPKDQKKKGA 1189


>ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus
            euphratica]
          Length = 1198

 Score = 2204 bits (5712), Expect = 0.0
 Identities = 1088/1167 (93%), Positives = 1126/1167 (96%), Gaps = 1/1167 (0%)
 Frame = -1

Query: 4026 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETI 3847
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ETI
Sbjct: 32   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 91

Query: 3846 YKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYAAPLYVDVTKRIIKKGHDCEEVA 3667
            YKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTY+APLYVDVTKR+IKKGHD EEV 
Sbjct: 92   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 151

Query: 3666 ETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3487
            ETQ+FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 152  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 211

Query: 3486 MSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRTSAKGGSSGQYIRATL 3307
            MSTNHVYVFKKRQPNK+AYV EVRSMAE+QNRP S+MFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 212  MSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 271

Query: 3306 PYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 3127
            PYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 272  PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY 331

Query: 3126 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2947
            IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 332  IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRR 391

Query: 2946 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2767
             EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 392  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 451

Query: 2766 TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2587
            TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 452  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 511

Query: 2586 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI 2407
            HNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVI
Sbjct: 512  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 571

Query: 2406 PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCS 2227
            PQATKIFVNG WVGIHR+PD+LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCS
Sbjct: 572  PQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 631

Query: 2226 RPLFIVEKQRLLIKKKHIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXXXXIND 2050
            RPLFIVEKQ+LLI+KK I ALQQRE P+E GWHDLV+KGF                 I+D
Sbjct: 632  RPLFIVEKQKLLIRKKDIHALQQRETPDEGGWHDLVSKGFIEYIDTEEEETTMISMTIHD 691

Query: 2049 LVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 1870
            LV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 692  LVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 751

Query: 1869 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 1690
            TNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 752  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 811

Query: 1689 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPG 1510
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 812  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 871

Query: 1509 TRVSGEDVIIGKTSPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 1330
            TRVSGEDVIIGKT+PI Q+++QGQ++RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFV
Sbjct: 872  TRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 931

Query: 1329 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 1150
            KVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 932  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 991

Query: 1149 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 970
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM
Sbjct: 992  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1051

Query: 969  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 790
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA
Sbjct: 1052 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1111

Query: 789  HFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRSCKNKTDIVQVHIPYACKLLFQ 610
            HFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECR CKNKTDIVQVHIPYACKLLFQ
Sbjct: 1112 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1171

Query: 609  ELMAMAIAPRMLTKEVKPSKNQKKKGA 529
            ELMAMAIAPRMLTK++K +K+QKKKGA
Sbjct: 1172 ELMAMAIAPRMLTKDIKQAKSQKKKGA 1198