BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00000619
         (2297 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010928148.1| PREDICTED: transcription initiation factor I...   605   e-170
ref|XP_009383582.1| PREDICTED: transcription initiation factor I...   583   e-163
ref|XP_009386377.1| PREDICTED: transcription initiation factor I...   573   e-160
ref|XP_009386374.1| PREDICTED: transcription initiation factor I...   571   e-159
ref|XP_010270094.1| PREDICTED: transcription initiation factor I...   561   e-157
ref|XP_012069319.1| PREDICTED: transcription initiation factor I...   561   e-157
ref|XP_002262798.3| PREDICTED: transcription initiation factor I...   558   e-156
ref|XP_012449917.1| PREDICTED: transcription initiation factor I...   550   e-153
gb|KHG13582.1| Transcription initiation factor IIF subunit alpha...   550   e-153
ref|NP_001064266.1| Os10g0188100 [Oryza sativa Japonica Group] g...   546   e-152
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|...   546   e-152
gb|AAX95773.1| putative transcription initiation factor [Oryza s...   545   e-152
gb|AAN04997.1| putative transcription initiation factor [Oryza s...   545   e-152
ref|XP_010234660.1| PREDICTED: transcription initiation factor I...   544   e-151
ref|XP_006467340.1| PREDICTED: transcription initiation factor I...   542   e-151
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr...   541   e-151
gb|KJB67330.1| hypothetical protein B456_010G186300 [Gossypium r...   539   e-150
ref|XP_004983299.1| PREDICTED: transcription initiation factor I...   538   e-150
ref|XP_004983298.1| PREDICTED: transcription initiation factor I...   538   e-150
ref|XP_010252616.1| PREDICTED: transcription initiation factor I...   531   e-148

>ref|XP_010928148.1| PREDICTED: transcription initiation factor IIF subunit alpha [Elaeis
            guineensis]
          Length = 537

 Score =  605 bits (1559), Expect = e-170
 Identities = 328/538 (60%), Positives = 362/538 (67%), Gaps = 10/538 (1%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP+CEGCGS SDLYGSNCKH TLC SCGK MAE+R RC +CG  +TKLIREYNV
Sbjct: 2    SFDLVLKPSCEGCGSTSDLYGSNCKHTTLCRSCGKTMAENRGRCRMCGAFITKLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RASA+ DK+++IGRFVTGLPPFSKKK+AENKW+L+K+GLQGRQLTD LREK+++KPW+LE
Sbjct: 62   RASANTDKAFYIGRFVTGLPPFSKKKNAENKWSLYKEGLQGRQLTDSLREKFKSKPWILE 121

Query: 1749 DETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEK 1576
            DETGQHQYQGQ+EG+QS  ATYYLL++ GKEF+AIPA SWYNF K+AQYKQLTLEEAEEK
Sbjct: 122  DETGQHQYQGQVEGSQSTTATYYLLMLHGKEFIAIPAGSWYNFTKIAQYKQLTLEEAEEK 181

Query: 1575 MNKRKNNATGYERWMMKAATNGAAAFGE-MKKLEGMSNDSADGNRSKKMKSEDTGDHSDK 1399
            MNKRK+NATGYERWMMKAATNGAAAFGE +KK EG S+  ADG+R+KK KS D GDHSDK
Sbjct: 182  MNKRKHNATGYERWMMKAATNGAAAFGELLKKSEGASSGGADGSRAKKGKSNDEGDHSDK 241

Query: 1398 GXXXXXXXEARKNRLGL-NXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAV 1222
            G       EARKNRLGL                            DWEHEE FTDDDEAV
Sbjct: 242  GEEDEEEEEARKNRLGLTKQGVDDEEEGGKGGDIDLDDDDIEKGDDWEHEETFTDDDEAV 301

Query: 1221 GNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXX 1042
            GNDPEEREDLAPEIPAPPEIKQDDED                                  
Sbjct: 302  GNDPEEREDLAPEIPAPPEIKQDDEDENEEDGGLSKSGKELKKLLGRAAGLNE--SDAED 359

Query: 1041 XXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLK-TAPAGSARGTPFXXXXXXXXXXXX 865
                    E  MSPVLAPKQKD PKDEP D+SP K   P GSARGTP             
Sbjct: 360  DDEDDDEDEVGMSPVLAPKQKDTPKDEPTDSSPSKPVPPPGSARGTPAASKSSKTKRKSE 419

Query: 864  XXXXXXXXXXXXKEL-----KPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEE 700
                         +         VK+EP                           PVTEE
Sbjct: 420  EVKSSNGAPVKKVKTDNDSKSSGVKDEPPSSTKSSAPAKGSSSTAARTGPTSSVAPVTEE 479

Query: 699  EIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLREK 526
            EIR+VLL+ APVTTQDLVA FK R+KSQEDK AFADILRRISKIQKTNGHNYVVLREK
Sbjct: 480  EIRTVLLSVAPVTTQDLVARFKARLKSQEDKSAFADILRRISKIQKTNGHNYVVLREK 537


>ref|XP_009383582.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Musa acuminata subsp. malaccensis]
          Length = 533

 Score =  583 bits (1502), Expect = e-163
 Identities = 316/535 (59%), Positives = 360/535 (67%), Gaps = 7/535 (1%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP C+GCGS SDLYGSNCKH TLC SCGK MA +R RC++CG  +TKLIREYNV
Sbjct: 2    SFDLVLKPCCDGCGSTSDLYGSNCKHTTLCLSCGKTMATNRGRCHLCGAFITKLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RASA+IDK+++IGRFVTGLPPFSKK  +EN+W+LHK+GLQGRQLTD L+EKY+NKPW+LE
Sbjct: 62   RASANIDKAFYIGRFVTGLPPFSKKS-SENRWSLHKEGLQGRQLTDTLKEKYKNKPWILE 120

Query: 1749 DETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEK 1576
            DETGQHQYQGQ+EG+QS  ATYYLL+M GKEF+A PA SWYNF+K+AQYKQLTLEEAEEK
Sbjct: 121  DETGQHQYQGQIEGSQSTTATYYLLMMHGKEFLAFPAGSWYNFSKIAQYKQLTLEEAEEK 180

Query: 1575 MNKRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADG-NRSKKMKSEDTGDHSDK 1399
            MNKR++NATGYERWMMKAATNGAAAFGE+KK E  S   ADG +R KK K+ D G+HSDK
Sbjct: 181  MNKRRHNATGYERWMMKAATNGAAAFGEVKKNEEASKGEADGSSRLKKGKNSDDGEHSDK 240

Query: 1398 GXXXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAV 1222
            G       EARKNRLGL+                           DWEHEE FTDDDEAV
Sbjct: 241  GEENEDEEEARKNRLGLSKKGVDDDEEGAKGGEFDLDDDDIEKGDDWEHEETFTDDDEAV 300

Query: 1221 GNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXX 1042
            GNDPEEREDLAPEIPAPPEIKQDDE+                                  
Sbjct: 301  GNDPEEREDLAPEIPAPPEIKQDDEEEDEEDGGLSKSGKELKKLLGRAAGLNE--SDGEE 358

Query: 1041 XXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTA-PAGSARGTPFXXXXXXXXXXXX 865
                    E  MSPVLAPKQKD PKDEP +N+P K A P+GSAR TP             
Sbjct: 359  EDDDDDDDEIGMSPVLAPKQKDAPKDEPTENTPSKAAPPSGSARSTPTTSKSSKAKRKPG 418

Query: 864  XXXXXXXXXXXXKELK--PSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEEIR 691
                        K++K  PS K+E                            PVTE+EIR
Sbjct: 419  SDDVKNNNGLPVKKMKDNPSAKDELPTSSKSNVPPKSSPATTSRPGSTPSTAPVTEDEIR 478

Query: 690  SVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLREK 526
            +VLL+  P+TTQDLVA FK R+KSQEDK AFADILRRISKIQK NGHNY+VLR+K
Sbjct: 479  TVLLSATPLTTQDLVAKFKARLKSQEDKNAFADILRRISKIQKANGHNYIVLRDK 533


>ref|XP_009386377.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X2 [Musa acuminata subsp. malaccensis]
          Length = 533

 Score =  573 bits (1477), Expect = e-160
 Identities = 313/536 (58%), Positives = 357/536 (66%), Gaps = 8/536 (1%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP C+GCGS SDLYGSNCKH TLC SCGK MA +R RC++CG  +TKLIREYNV
Sbjct: 2    SFDLVLKPCCDGCGSTSDLYGSNCKHTTLCLSCGKTMAANRGRCHLCGAFITKLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RASA++DK+++IGRFVTGLPPFSKK  +EN+W+LHK+GLQGRQLTD LREKY+NKPW+LE
Sbjct: 62   RASANMDKAFYIGRFVTGLPPFSKKI-SENRWSLHKEGLQGRQLTDNLREKYKNKPWILE 120

Query: 1749 DETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEK 1576
            DETGQHQYQGQ+EG+QS  ATYYLL+MQGKEF+A PA SWYNF+K+AQYKQLTLEEAEEK
Sbjct: 121  DETGQHQYQGQIEGSQSTTATYYLLMMQGKEFLAFPAGSWYNFSKIAQYKQLTLEEAEEK 180

Query: 1575 MNKRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADGN-RSKKMKSEDTGDHSDK 1399
            MNKR++NATGYERWMMKAATNG AAFGE+K  E ++   ADG+ R KK KS D G+HSDK
Sbjct: 181  MNKRRHNATGYERWMMKAATNGPAAFGEIKN-EDVTKAEADGSVRLKKGKSNDDGNHSDK 239

Query: 1398 GXXXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAV 1222
            G        ARKNRLGLN                           DWEHEE FTDDDEAV
Sbjct: 240  GEEDDDEEGARKNRLGLNKKAIDDDEEGAKGGDFDLDDEDIEKGDDWEHEETFTDDDEAV 299

Query: 1221 GNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXX 1042
            GNDPEEREDLAPEIPAPPEIKQDDED                                  
Sbjct: 300  GNDPEEREDLAPEIPAPPEIKQDDEDEDEEDGGLSKSGRELKKLLGRAAGLNE--SDGDE 357

Query: 1041 XXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTA-PAGSARGTPFXXXXXXXXXXXX 865
                    E  MSPVLAPKQKD PKDEP +N+  K + P+ SAR +P             
Sbjct: 358  DDEDDDDDEIGMSPVLAPKQKDAPKDEPTENTTSKASPPSTSARSSPVTSKSSKSKRKAG 417

Query: 864  XXXXXXXXXXXXKELK---PSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEEI 694
                        K++K    + K EP                           PVTE+EI
Sbjct: 418  SDDAKISNGLPAKKVKADNSNAKAEPPTSSKRNVPPKSLHATTSKLGSMSSTAPVTEDEI 477

Query: 693  RSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLREK 526
            R+VLL+  P+TTQDLVA FK R+KSQEDKKAFADILRRISKIQK NGHNY+VLREK
Sbjct: 478  RTVLLSATPLTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKANGHNYIVLREK 533


>ref|XP_009386374.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 542

 Score =  571 bits (1471), Expect = e-159
 Identities = 313/543 (57%), Positives = 358/543 (65%), Gaps = 15/543 (2%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP C+GCGS SDLYGSNCKH TLC SCGK MA +R RC++CG  +TKLIREYNV
Sbjct: 2    SFDLVLKPCCDGCGSTSDLYGSNCKHTTLCLSCGKTMAANRGRCHLCGAFITKLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RASA++DK+++IGRFVTGLPPFSKK  +EN+W+LHK+GLQGRQLTD LREKY+NKPW+LE
Sbjct: 62   RASANMDKAFYIGRFVTGLPPFSKKI-SENRWSLHKEGLQGRQLTDNLREKYKNKPWILE 120

Query: 1749 DETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEK 1576
            DETGQHQYQGQ+EG+QS  ATYYLL+MQGKEF+A PA SWYNF+K+AQYKQLTLEEAEEK
Sbjct: 121  DETGQHQYQGQIEGSQSTTATYYLLMMQGKEFLAFPAGSWYNFSKIAQYKQLTLEEAEEK 180

Query: 1575 MNKRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADGN-RSKKMKSEDTGDHSDK 1399
            MNKR++NATGYERWMMKAATNG AAFGE+K  E ++   ADG+ R KK KS D G+HSDK
Sbjct: 181  MNKRRHNATGYERWMMKAATNGPAAFGEIKN-EDVTKAEADGSVRLKKGKSNDDGNHSDK 239

Query: 1398 GXXXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAV 1222
            G        ARKNRLGLN                           DWEHEE FTDDDEAV
Sbjct: 240  GEEDDDEEGARKNRLGLNKKAIDDDEEGAKGGDFDLDDEDIEKGDDWEHEETFTDDDEAV 299

Query: 1221 GNDPEEREDLAPEIPAPPEIKQDDED-------XXXXXXXXXXXXXXXXXXXXXXXXXLN 1063
            GNDPEEREDLAPEIPAPPEIKQDDED                                 +
Sbjct: 300  GNDPEEREDLAPEIPAPPEIKQDDEDEDEEDGGLSKSGRELKKLLGRAAGLNESDGDEDD 359

Query: 1062 XXXXXXXXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTA-PAGSARGTPFXXXXX 886
                           E  MSPVLAPKQKD PKDEP +N+  K + P+ SAR +P      
Sbjct: 360  EDDDVSAVGIPQFDDEIGMSPVLAPKQKDAPKDEPTENTTSKASPPSTSARSSPVTSKSS 419

Query: 885  XXXXXXXXXXXXXXXXXXXKELK---PSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXG 715
                               K++K    + K EP                           
Sbjct: 420  KSKRKAGSDDAKISNGLPAKKVKADNSNAKAEPPTSSKRNVPPKSLHATTSKLGSMSSTA 479

Query: 714  PVTEEEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVL 535
            PVTE+EIR+VLL+  P+TTQDLVA FK R+KSQEDKKAFADILRRISKIQK NGHNY+VL
Sbjct: 480  PVTEDEIRTVLLSATPLTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKANGHNYIVL 539

Query: 534  REK 526
            REK
Sbjct: 540  REK 542


>ref|XP_010270094.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Nelumbo nucifera] gi|720045081|ref|XP_010270096.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha-like [Nelumbo nucifera]
          Length = 540

 Score =  561 bits (1446), Expect = e-157
 Identities = 312/541 (57%), Positives = 346/541 (63%), Gaps = 13/541 (2%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            S DL+LKP+C GCGS SDLYGSNCKH TLC SCGK MAE+  +C  CGVPVT+LIREYNV
Sbjct: 2    SSDLLLKPSCGGCGSTSDLYGSNCKHMTLCLSCGKTMAENHGKCYECGVPVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RAS + DK+YFIGRFVTG+P FSKKK+A NKW+L K+GLQGRQ+TD LREKY+NKPWLLE
Sbjct: 62   RASPASDKTYFIGRFVTGIPNFSKKKNASNKWSLQKEGLQGRQVTDALREKYKNKPWLLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QY GQLEG+QSATYYLL+MQGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQSQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADG----NRSKKMKSEDTGDHSD 1402
             R+  A GY+RWMMKAA NG AAFGE++K +   +    G     R K    ED G+ SD
Sbjct: 182  NRRKTADGYQRWMMKAANNGPAAFGEVEKFDDKESGGGGGGGGRGRKKATGDEDEGNASD 241

Query: 1401 KGXXXXXXXEARKNRLGL-NXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEA 1225
            +G       EARKNRLGL                            DWEHEEIFTDDDEA
Sbjct: 242  RGEEDEEEEEARKNRLGLRKLAGDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEA 301

Query: 1224 VGNDPEEREDLAPEIPAPPEIKQD--DEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXX 1051
            VGNDPEEREDLAPE+PAPPEIKQD  DED                         LN    
Sbjct: 302  VGNDPEEREDLAPEVPAPPEIKQDEEDEDEANEEEGGLSKSGKELKKLLGRAGGLNDSDA 361

Query: 1050 XXXXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPF------XXXX 889
                       E  MSPVLAPKQKD PK+EPAD+SP K  P+GSARGTP           
Sbjct: 362  EEEEDDDDMEDEMGMSPVLAPKQKDSPKEEPADSSPSKPVPSGSARGTPSTSKSSKSKRK 421

Query: 888  XXXXXXXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPV 709
                                 E K SVK+EP                          GPV
Sbjct: 422  SAGDDGKVPNGAPAKKGKFENESKSSVKDEP--TSTSRGNVPPKGSASLTTGSTPPTGPV 479

Query: 708  TEEEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLRE 529
            TE+EIR+VLL  APVTTQDLVA FK R+KS+EDK AFA+ILRRISKIQKTNG NYVVLR+
Sbjct: 480  TEDEIRAVLLQMAPVTTQDLVAKFKARLKSKEDKAAFAEILRRISKIQKTNGSNYVVLRD 539

Query: 528  K 526
            K
Sbjct: 540  K 540


>ref|XP_012069319.1| PREDICTED: transcription initiation factor IIF subunit alpha
            [Jatropha curcas] gi|802578042|ref|XP_012069320.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha [Jatropha curcas] gi|802578044|ref|XP_012069321.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha [Jatropha curcas] gi|802578046|ref|XP_012069322.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha [Jatropha curcas] gi|643733570|gb|KDP40450.1|
            hypothetical protein JCGZ_03950 [Jatropha curcas]
          Length = 533

 Score =  561 bits (1446), Expect = e-157
 Identities = 306/537 (56%), Positives = 343/537 (63%), Gaps = 9/537 (1%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP+C GCGS  +LYGSNCKH TLC +CGK MAE+R +C  CG  VT+LIREYNV
Sbjct: 2    SFDLMLKPSCSGCGSTQELYGSNCKHMTLCLTCGKTMAENRGKCYDCGATVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RAS+S DK+YFIGRFVTGLP FSKKK AENKW+LHKDGLQGRQLTD LREKYRNKPW+LE
Sbjct: 62   RASSSSDKNYFIGRFVTGLPSFSKKKSAENKWSLHKDGLQGRQLTDALREKYRNKPWMLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QYQG LEG+QSATYYLL++QGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQSQYQGHLEGSQSATYYLLILQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSA--DGNRSKKMKSEDTGDHSDKG 1396
             R+  A GY+RWMMKAA NGAAAFGE++K +   + +A   G R K    E+ G+ SD+ 
Sbjct: 182  NRRKTADGYQRWMMKAANNGAAAFGEVEKFDDKESGTAGGKGGRKKPAGDEEEGNVSDRA 241

Query: 1395 XXXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVG 1219
                    ARKNRLGLN                           DWEHEEIFTDDDEAVG
Sbjct: 242  EEDEEEEAARKNRLGLNKRSGDDDEEGLRGGDHDMDDDDSEKGDDWEHEEIFTDDDEAVG 301

Query: 1218 NDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXXX 1039
            NDPEEREDLAPE+PAPPEIKQD+ED                                   
Sbjct: 302  NDPEEREDLAPEVPAPPEIKQDEED-EDEENEEGGLSKSGKELKKLLGKAAGLNDSDAED 360

Query: 1038 XXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPF------XXXXXXXX 877
                   E  +SPVLAPKQKD PK+EP DNSP K  P+ SA+GTP               
Sbjct: 361  DDDDEDMEEDVSPVLAPKQKDAPKEEPVDNSPAKPMPSSSAKGTPSNSKSAKGKRKLSGD 420

Query: 876  XXXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEE 697
                             +LKP+VKEE                            PVTEEE
Sbjct: 421  DAKTSSGAPQKKVKAENDLKPTVKEE----HAPTAKSSPTPKGATSSLKPGSTSPVTEEE 476

Query: 696  IRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLREK 526
            IR+VLL   PVTTQDLVA FK R+K  EDKKAFA+ILRRISKIQKT+G NYVVLRE+
Sbjct: 477  IRAVLLQNGPVTTQDLVARFKSRLKGSEDKKAFAEILRRISKIQKTSGSNYVVLRER 533


>ref|XP_002262798.3| PREDICTED: transcription initiation factor IIF subunit alpha [Vitis
            vinifera] gi|297741818|emb|CBI33123.3| unnamed protein
            product [Vitis vinifera]
          Length = 539

 Score =  558 bits (1437), Expect = e-156
 Identities = 308/539 (57%), Positives = 346/539 (64%), Gaps = 11/539 (2%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP+C GCGS +DLYGSNCKH TLC SCGK MAE+  +C  CG PVT+LIREYNV
Sbjct: 2    SFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            R ++S DK+YFIGRFVTGLP FSKKK+A+NKW+LHK+GLQGRQ++D LREKY+NKPWLLE
Sbjct: 62   RTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ+QY GQLEG+QSATYYLL+MQGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADG---NRSKKMKSEDTGDHSDK 1399
             R+  A GY+RWMMKAA NG AAFGE++KL+      A G    R K+   E+ G+ SDK
Sbjct: 182  NRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDK 241

Query: 1398 GXXXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAV 1222
                      RKNRLGLN                           DWEHEEIFTDDDEAV
Sbjct: 242  AEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAV 301

Query: 1221 GNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLN-XXXXXX 1045
            GNDPEEREDLAPE+PAPPEIKQD+ED                                  
Sbjct: 302  GNDPEEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDAE 361

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTP------FXXXXXX 883
                     E  +SPVLAPKQKD PK+EPADNSP+K+A A SAR TP             
Sbjct: 362  DDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATA-SARSTPPTSKSSKGKRKSN 420

Query: 882  XXXXXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTE 703
                               E K S K+E                           GPVTE
Sbjct: 421  GDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVTE 480

Query: 702  EEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLREK 526
            +EIR+VLL  APVTTQDLVA FK R+KSQEDKKAFADILRRISKIQKTNG NYVVLR+K
Sbjct: 481  DEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRDK 539


>ref|XP_012449917.1| PREDICTED: transcription initiation factor IIF subunit alpha
            [Gossypium raimondii] gi|823234571|ref|XP_012449918.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha [Gossypium raimondii]
            gi|823234573|ref|XP_012449919.1| PREDICTED: transcription
            initiation factor IIF subunit alpha [Gossypium raimondii]
            gi|763800373|gb|KJB67328.1| hypothetical protein
            B456_010G186300 [Gossypium raimondii]
            gi|763800374|gb|KJB67329.1| hypothetical protein
            B456_010G186300 [Gossypium raimondii]
          Length = 547

 Score =  550 bits (1418), Expect = e-153
 Identities = 309/547 (56%), Positives = 345/547 (63%), Gaps = 19/547 (3%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP+C GCGS  DLYGSNCKH TLC SCGK MAE++ +C  CG  VT+LIREYNV
Sbjct: 2    SFDLMLKPSCSGCGSSQDLYGSNCKHMTLCVSCGKTMAENQGKCFECGAIVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RAS S DK+YFIGRF+TGLP FSKKK+AEN+W+L KDGLQGRQ+TD LREKY+NKPWLLE
Sbjct: 62   RASPSTDKNYFIGRFMTGLPNFSKKKNAENRWSLQKDGLQGRQVTDALREKYKNKPWLLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QYQGQLEG+QSATYYLL+MQGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQAQYQGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADGNRSKKMKSEDTGDH-SDKGX 1393
             R+  A GYERWMMKAA NGAAAFGE++K++     +A G   KK   E+   H SD+G 
Sbjct: 182  NRRKTADGYERWMMKAANNGAAAFGEVEKIDEKETAAAGGRGRKKSTGEEEEGHVSDRGE 241

Query: 1392 XXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVGN 1216
                   ARKNRLGLN                           DWEHEEIFTDDDEAVGN
Sbjct: 242  EDEEEEAARKNRLGLNKKSGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGN 301

Query: 1215 DPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXXXX 1036
            DPEER DLAPE+PAPPEIK+D+++                         LN         
Sbjct: 302  DPEER-DLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLGKASGLNDSDADEDDD 360

Query: 1035 XXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTP----FXXXXXXXXXXX 868
                  +   +P  APKQKD PK+EPADNSP+K AP+ SARGTP                
Sbjct: 361  DEDVDDDMNFNPTPAPKQKDAPKEEPADNSPMKPAPSASARGTPAASKSSKGKRKGDDTK 420

Query: 867  XXXXXXXXXXXXXKELKPSVKEE------------PXXXXXXXXXXXXXXXXXXXXXXXX 724
                          E K SVKEE                                     
Sbjct: 421  ASNGTPLKKVKSEPESKTSVKEENTSASKGSAPSKGTSSSAKAGSTSAASASSSKAGSAS 480

Query: 723  XXGPVTEEEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNG-HN 547
              GPVTEEEIR+VLL  APVTT DLVA FK R+KS EDKKAFADILRRISKIQKTNG +N
Sbjct: 481  TAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKIQKTNGPNN 540

Query: 546  YVVLREK 526
            YVVLREK
Sbjct: 541  YVVLREK 547


>gb|KHG13582.1| Transcription initiation factor IIF subunit alpha -like protein
            [Gossypium arboreum]
          Length = 547

 Score =  550 bits (1418), Expect = e-153
 Identities = 309/547 (56%), Positives = 345/547 (63%), Gaps = 19/547 (3%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP+C GCGS  DLYGSNCKH TLC SCGK MAE++ +C  CG  VT+LIREYNV
Sbjct: 2    SFDLMLKPSCSGCGSSQDLYGSNCKHMTLCVSCGKTMAENQGKCFECGAIVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RAS S DK+YFIGRF+TGLP FSKKK+AEN+W+L KDGLQGRQ+TD LREKY+NKPWLLE
Sbjct: 62   RASPSTDKNYFIGRFMTGLPNFSKKKNAENRWSLQKDGLQGRQVTDALREKYKNKPWLLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QYQGQLEG+QSATYYLL+MQGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQAQYQGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADGNRSKKMKSEDTGDH-SDKGX 1393
             R+  A GYERWMMKAA NGAAAFGE++K++     +A G   KK   E+   H SD+G 
Sbjct: 182  NRRKTADGYERWMMKAANNGAAAFGEVEKIDEKETAAAGGRGRKKSTGEEEEGHVSDRGE 241

Query: 1392 XXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVGN 1216
                   ARKNRLGLN                           DWEHEEIFTDDDEAVGN
Sbjct: 242  EDEEEEAARKNRLGLNKKSGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGN 301

Query: 1215 DPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXXXX 1036
            DPEER DLAPE+PAPPEIK+D+++                         LN         
Sbjct: 302  DPEER-DLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLGKASGLNDSDADEEDD 360

Query: 1035 XXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTP----FXXXXXXXXXXX 868
                  +   +P  APKQKD PK+EPADNSP+K AP+ SARGTP                
Sbjct: 361  DEDVDDDMNFNPTPAPKQKDAPKEEPADNSPMKPAPSASARGTPATSKSSKGKRKGDDTK 420

Query: 867  XXXXXXXXXXXXXKELKPSVKEE------------PXXXXXXXXXXXXXXXXXXXXXXXX 724
                          E K SVKEE                                     
Sbjct: 421  ASNGTPLKKVKSEPESKTSVKEENTAASKGSAPSKGTSSSAKAGSTSAASASSSKAGSAS 480

Query: 723  XXGPVTEEEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNG-HN 547
              GPVTEEEIR+VLL  APVTT DLVA FK R+KS EDKKAFADILRRISKIQKTNG +N
Sbjct: 481  TAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKIQKTNGPNN 540

Query: 546  YVVLREK 526
            YVVLREK
Sbjct: 541  YVVLREK 547


>ref|NP_001064266.1| Os10g0188100 [Oryza sativa Japonica Group] gi|62733662|gb|AAX95774.1|
            putative transcription initiation factor [Oryza sativa
            Japonica Group] gi|78708005|gb|ABB46980.1| mutant
            TFIIF-alpha, putative, expressed [Oryza sativa Japonica
            Group] gi|113638875|dbj|BAF26180.1| Os10g0188100 [Oryza
            sativa Japonica Group] gi|215713568|dbj|BAG94705.1|
            unnamed protein product [Oryza sativa Japonica Group]
            gi|215769198|dbj|BAH01427.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 529

 Score =  546 bits (1408), Expect = e-152
 Identities = 299/535 (55%), Positives = 342/535 (63%), Gaps = 6/535 (1%)
 Frame = -3

Query: 2115 MSSFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREY 1936
            M S DL+LK ACEGCGSPSDLYG++CKH TLC SCGK MA S ARC VC  P+T LIREY
Sbjct: 1    MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60

Query: 1935 NVRASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWL 1756
            NVRA+A+ DKS+ IGRFVTGLPPFSKKK AENKW+LHK+GLQGRQ+ + +REKY  KPW+
Sbjct: 61   NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120

Query: 1755 LEDETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAE 1582
            LEDETGQ+QYQGQ+EG+QS  ATYYLL+M GKEF A PA SWYNF+K+AQYKQLTLEEAE
Sbjct: 121  LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAE 180

Query: 1581 EKMNKRKNNATGYERWMMKAATNGAAAFG-EMKKLEGMSNDSADGNRSKKMKSEDTGDHS 1405
            EKMNKRK +ATGYERWMMKAATNG AAFG ++KKLE  +    +  R KK K+ + G++S
Sbjct: 181  EKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNS 240

Query: 1404 DKGXXXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEA 1225
            DKG        ARKNRL LN                          DWEHEE FTDDDEA
Sbjct: 241  DKGEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300

Query: 1224 VGNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXX 1045
            V  DPEER DLAPEIPAPPEIKQDDE+                          +      
Sbjct: 301  VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNES----DA 356

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTP---FXXXXXXXXX 874
                     E   SPVLAPKQKD PKDEP DNSP K  P+G ARGTP             
Sbjct: 357  DEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGG 416

Query: 873  XXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEEI 694
                           K+ KPSV ++                            PVTE+EI
Sbjct: 417  GDDSKASGGAASKKAKDTKPSVAKD-----ETPSSSKPASKATAASKTSANVSPVTEDEI 471

Query: 693  RSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLRE 529
            R+VLLA APVTTQDLV+ FK R++  EDK AFA+IL++ISKIQKTNGHNYVVLR+
Sbjct: 472  RTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRD 526


>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1|
            tfiif-alpha, putative [Ricinus communis]
          Length = 533

 Score =  546 bits (1407), Expect = e-152
 Identities = 303/539 (56%), Positives = 347/539 (64%), Gaps = 9/539 (1%)
 Frame = -3

Query: 2115 MSSFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREY 1936
            M++ DL+LK +C GCGS +DLYGSNCKH TLC SCGK MAE+ A+C  CG  V++LIREY
Sbjct: 1    MATMDLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREY 60

Query: 1935 NVRASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWL 1756
            NVRAS+S DK+YFIGRFVTGLP FSKKK+AENKW+L K+GLQGRQLTD LREKY+N+PWL
Sbjct: 61   NVRASSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWL 120

Query: 1755 LEDETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEK 1576
            LEDETGQ QYQG LEG+QSATYYLL++QGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEK
Sbjct: 121  LEDETGQFQYQGHLEGSQSATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEK 180

Query: 1575 MNKRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADGNRSKKMKSED-TGDHSDK 1399
            M  R+  A GYERWMMKAA NG AAFGE++KL+   + +A G   KK   +D  G+ SD+
Sbjct: 181  MRNRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDR 240

Query: 1398 GXXXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAV 1222
            G        ARKNRLGLN                           DWEHEEIFTDDDEAV
Sbjct: 241  GDEDEEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAV 300

Query: 1221 GNDPEEREDLAPEIPAPPEIKQD-DEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXX 1045
            GND EEREDLAPE+PAPPEIKQD D++                         LN      
Sbjct: 301  GNDREEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGRAGGLNDSDAED 360

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPF------XXXXXX 883
                     + ++SPVLAPKQ   PK+EPADNSP K   + S++GTP             
Sbjct: 361  DDDDDDMDEDVSISPVLAPKQT--PKEEPADNSPAKPMTSASSKGTPSTSKSAKGKRKLN 418

Query: 882  XXXXXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTE 703
                               ELKP+VKEE                            PVTE
Sbjct: 419  SDEAKQTNVAPQKKVKTENELKPTVKEE----SAPTSKSSATPKAAPPSAKTGSTSPVTE 474

Query: 702  EEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLREK 526
            EEIR+VLL   PVTTQDLVA FK R+KS EDKKAFADILRRISKIQKT+G +YVVLR+K
Sbjct: 475  EEIRAVLLQNGPVTTQDLVARFKSRLKSSEDKKAFADILRRISKIQKTSGSSYVVLRDK 533


>gb|AAX95773.1| putative transcription initiation factor [Oryza sativa Japonica
            Group] gi|78708004|gb|ABB46979.1| mutant TFIIF-alpha,
            putative, expressed [Oryza sativa Japonica Group]
          Length = 531

 Score =  545 bits (1405), Expect = e-152
 Identities = 297/533 (55%), Positives = 339/533 (63%), Gaps = 4/533 (0%)
 Frame = -3

Query: 2115 MSSFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREY 1936
            M S DL+LK ACEGCGSPSDLYG++CKH TLC SCGK MA S ARC VC  P+T LIREY
Sbjct: 1    MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60

Query: 1935 NVRASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWL 1756
            NVRA+A+ DKS+ IGRFVTGLPPFSKKK AENKW+LHK+GLQGRQ+ + +REKY  KPW+
Sbjct: 61   NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120

Query: 1755 LEDETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAE 1582
            LEDETGQ+QYQGQ+EG+QS  ATYYLL+M GKEF A PA SWYNF+K+AQYKQLTLEEAE
Sbjct: 121  LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAE 180

Query: 1581 EKMNKRKNNATGYERWMMKAATNGAAAFG-EMKKLEGMSNDSADGNRSKKMKSEDTGDHS 1405
            EKMNKRK +ATGYERWMMKAATNG AAFG ++KKLE  +    +  R KK K+ + G++S
Sbjct: 181  EKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNS 240

Query: 1404 DKGXXXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEA 1225
            DKG        ARKNRL LN                          DWEHEE FTDDDEA
Sbjct: 241  DKGEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300

Query: 1224 VGNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXX 1045
            V  DPEER DLAPEIPAPPEIKQDDE+                          +      
Sbjct: 301  VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNES-----D 355

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPFXXXXXXXXXXXX 865
                     E   SPVLAPKQKD PKDEP DNSP K  P+G ARGTP             
Sbjct: 356  ADEDDEDDDEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGG 415

Query: 864  XXXXXXXXXXXXKELKPSVKEEP-XXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEEIRS 688
                        K+ K     +P                            PVTE+EIR+
Sbjct: 416  GDDSKASGGAASKKAKVESDTKPSVAKDETPSSSKPASKATAASKTSANVSPVTEDEIRT 475

Query: 687  VLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLRE 529
            VLLA APVTTQDLV+ FK R++  EDK AFA+IL++ISKIQKTNGHNYVVLR+
Sbjct: 476  VLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRD 528


>gb|AAN04997.1| putative transcription initiation factor [Oryza sativa Japonica
            Group] gi|31430629|gb|AAP52517.1| mutant TFIIF-alpha,
            putative, expressed [Oryza sativa Japonica Group]
          Length = 532

 Score =  545 bits (1405), Expect = e-152
 Identities = 297/533 (55%), Positives = 339/533 (63%), Gaps = 4/533 (0%)
 Frame = -3

Query: 2115 MSSFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREY 1936
            M S DL+LK ACEGCGSPSDLYG++CKH TLC SCGK MA S ARC VC  P+T LIREY
Sbjct: 1    MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60

Query: 1935 NVRASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWL 1756
            NVRA+A+ DKS+ IGRFVTGLPPFSKKK AENKW+LHK+GLQGRQ+ + +REKY  KPW+
Sbjct: 61   NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120

Query: 1755 LEDETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAE 1582
            LEDETGQ+QYQGQ+EG+QS  ATYYLL+M GKEF A PA SWYNF+K+AQYKQLTLEEAE
Sbjct: 121  LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAE 180

Query: 1581 EKMNKRKNNATGYERWMMKAATNGAAAFG-EMKKLEGMSNDSADGNRSKKMKSEDTGDHS 1405
            EKMNKRK +ATGYERWMMKAATNG AAFG ++KKLE  +    +  R KK K+ + G++S
Sbjct: 181  EKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNS 240

Query: 1404 DKGXXXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEA 1225
            DKG        ARKNRL LN                          DWEHEE FTDDDEA
Sbjct: 241  DKGEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300

Query: 1224 VGNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXX 1045
            V  DPEER DLAPEIPAPPEIKQDDE+                          +      
Sbjct: 301  VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNES----DA 356

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPFXXXXXXXXXXXX 865
                     E   SPVLAPKQKD PKDEP DNSP K  P+G ARGTP             
Sbjct: 357  DEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGG 416

Query: 864  XXXXXXXXXXXXKELKPSVKEEP-XXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEEIRS 688
                        K+ K     +P                            PVTE+EIR+
Sbjct: 417  GDDSKASGGAASKKAKVESDTKPSVAKDETPSSSKPASKATAASKTSANVSPVTEDEIRT 476

Query: 687  VLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLRE 529
            VLLA APVTTQDLV+ FK R++  EDK AFA+IL++ISKIQKTNGHNYVVLR+
Sbjct: 477  VLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRD 529


>ref|XP_010234660.1| PREDICTED: transcription initiation factor IIF subunit alpha
            [Brachypodium distachyon]
          Length = 531

 Score =  544 bits (1401), Expect = e-151
 Identities = 300/539 (55%), Positives = 345/539 (64%), Gaps = 10/539 (1%)
 Frame = -3

Query: 2115 MSSFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREY 1936
            M S DL+LKPACEGCGSPSDLYG+ CKH TLC SCGK MA SRARC VC  P+T LIREY
Sbjct: 1    MGSVDLVLKPACEGCGSPSDLYGTGCKHTTLCSSCGKSMALSRARCLVCSAPITNLIREY 60

Query: 1935 NVRASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWL 1756
            NVRA+AS DK++ IGRFVTGLPPFSKKK+AENKW+LHK+GLQGRQLTD ++EKY  KPW+
Sbjct: 61   NVRANASTDKAFSIGRFVTGLPPFSKKKNAENKWSLHKEGLQGRQLTDKMQEKYNRKPWI 120

Query: 1755 LEDETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAE 1582
            LEDETGQ+Q+QG +EG+QS  ATYYLL+MQGKEF A PA SWYNF+KVAQYKQLTLEEAE
Sbjct: 121  LEDETGQYQFQGHMEGSQSATATYYLLMMQGKEFHAFPAGSWYNFSKVAQYKQLTLEEAE 180

Query: 1581 EKMNKRKNNATGYERWMMKAATNGAAAFG-EMKKLEGMSNDSADGNRSKKMKSEDTGDHS 1405
            EKMNKRK +ATGYERWMMKAATNG AAFG ++KKLE  ++   +  R KK K  + G++S
Sbjct: 181  EKMNKRKTSATGYERWMMKAATNGPAAFGSDIKKLEPTNDGEKESARPKKGKDNEEGNNS 240

Query: 1404 DKGXXXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEA 1225
            DKG        ARK+RLGL+                          DWEHEE FTDDDEA
Sbjct: 241  DKGEENEEDEAARKDRLGLSKRGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300

Query: 1224 VGNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXX 1045
            V  DPEER DLAPEIPAPPEIKQDDE+                          +      
Sbjct: 301  VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRASGQNES----DA 356

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAP-AGSARGT-PFXXXXXXXXXX 871
                     +   SPVLAPKQ D PKDEP DNSP K  P +G AR T P           
Sbjct: 357  DEDDEDDDQDDESSPVLAPKQNDQPKDEPVDNSPAKPTPSSGHARSTPPASKSKQKRKSG 416

Query: 870  XXXXXXXXXXXXXXKELKP-----SVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVT 706
                           +++P     S+KEE                            PVT
Sbjct: 417  GDDAKTSGSAASKKAKVEPDTKTSSIKEE-------APSSLKHTSKASASSRNANVSPVT 469

Query: 705  EEEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLRE 529
            E+EIR+VLLA APVTTQDLV+ FK R++  EDK AFA+IL++ISKIQKTNGHNYVVLRE
Sbjct: 470  EDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRE 528


>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Citrus sinensis]
            gi|568825955|ref|XP_006467341.1| PREDICTED: transcription
            initiation factor IIF subunit alpha-like isoform X2
            [Citrus sinensis] gi|641859741|gb|KDO78431.1|
            hypothetical protein CISIN_1g008099mg [Citrus sinensis]
            gi|641859742|gb|KDO78432.1| hypothetical protein
            CISIN_1g008099mg [Citrus sinensis]
          Length = 538

 Score =  542 bits (1397), Expect = e-151
 Identities = 307/539 (56%), Positives = 340/539 (63%), Gaps = 11/539 (2%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP C GCGS +DLYGSNCKH TLC +CGK MAE++A+C  CG  VT+LIREYNV
Sbjct: 2    SFDLLLKPQCSGCGSQADLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            R S S DK+YFIGRFV+GLP FSKKK+AENKWTLHKDGLQGRQ+TD LREKY+NKPW+LE
Sbjct: 62   RPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWMLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QYQG LEG+QSATYYLLVM  KEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADG-NRSKKMKSEDTGDHSDKGX 1393
             R+  A GYERWMMKAA NGAAAFGE++K +   +    G  RSKK   ED G+ SD+G 
Sbjct: 182  NRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGE 241

Query: 1392 XXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVGN 1216
                    RKNRLGLN                           DWEHEEIFTDDDEAVGN
Sbjct: 242  EDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGN 301

Query: 1215 DPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLN-XXXXXXXX 1039
            DPEEREDLAPE+PAPPEIKQD+ED                         LN         
Sbjct: 302  DPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDD 361

Query: 1038 XXXXXXXETAMSPVLAPKQKDGP-KDEPADNSPLKTAPAGSARGTPF------XXXXXXX 880
                   E   SP+LAPK KD P K+EPADNSP K AP+GS R TP              
Sbjct: 362  EDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNG 421

Query: 879  XXXXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEE 700
                              E K S ++E                           GPVT E
Sbjct: 422  DDARAPSGAPLKKVKTENETKSSARDE--NVSASKSSAPAKGASSSRTGSTSASGPVTAE 479

Query: 699  EIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNG-HNYVVLREK 526
            EIR+VLL  APVTTQDLVA FK R++S ED+ AFADIL+RISKIQKTNG  NYVVLREK
Sbjct: 480  EIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538


>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
            gi|567915083|ref|XP_006449855.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552465|gb|ESR63094.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552466|gb|ESR63095.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
          Length = 538

 Score =  541 bits (1394), Expect = e-151
 Identities = 307/539 (56%), Positives = 339/539 (62%), Gaps = 11/539 (2%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP C GCGS  DLYGSNCKH TLC +CGK MAE++A+C  CG  VT+LIREYNV
Sbjct: 2    SFDLLLKPQCSGCGSQVDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            R S S DK+YFIGRFV+GLP FSKKK+AENKWTLHKDGLQGRQ+TD LREKY+NKPW+LE
Sbjct: 62   RPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWMLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QYQG LEG+QSATYYLLVM  KEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADG-NRSKKMKSEDTGDHSDKGX 1393
             R+  A GYERWMMKAA NGAAAFGE++K +   +    G  RSKK   ED G+ SD+G 
Sbjct: 182  NRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGE 241

Query: 1392 XXXXXXEARKNRLGLN-XXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVGN 1216
                    RKNRLGLN                           DWEHEEIFTDDDEAVGN
Sbjct: 242  EDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGN 301

Query: 1215 DPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLN-XXXXXXXX 1039
            DPEEREDLAPE+PAPPEIKQD+ED                         LN         
Sbjct: 302  DPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDD 361

Query: 1038 XXXXXXXETAMSPVLAPKQKDGP-KDEPADNSPLKTAPAGSARGTPF------XXXXXXX 880
                   E   SP+LAPK KD P K+EPADNSP K AP+GS R TP              
Sbjct: 362  EDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNG 421

Query: 879  XXXXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEE 700
                              E K S ++E                           GPVT E
Sbjct: 422  DDARAPSGAPLKKVKTENETKSSARDE--NVSASKSSAPAKGASSSRTGSTSASGPVTAE 479

Query: 699  EIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNG-HNYVVLREK 526
            EIR+VLL  APVTTQDLVA FK R++S ED+ AFADIL+RISKIQKTNG  NYVVLREK
Sbjct: 480  EIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538


>gb|KJB67330.1| hypothetical protein B456_010G186300 [Gossypium raimondii]
          Length = 540

 Score =  539 bits (1389), Expect = e-150
 Identities = 304/546 (55%), Positives = 341/546 (62%), Gaps = 18/546 (3%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            SFDL+LKP+C GCGS  DLYGSNCKH TLC SCGK MAE++ +C  CG  VT+LIREYNV
Sbjct: 2    SFDLMLKPSCSGCGSSQDLYGSNCKHMTLCVSCGKTMAENQGKCFECGAIVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RAS S DK+YFIGRF+TGLP FSKKK+AEN+W+L KDGLQGRQ+TD LREKY+NKPWLLE
Sbjct: 62   RASPSTDKNYFIGRFMTGLPNFSKKKNAENRWSLQKDGLQGRQVTDALREKYKNKPWLLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QYQGQLEG+QSATYYLL+MQGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQAQYQGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 181

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADGNRSKKMKSEDTGDH-SDKGX 1393
             R+  A GYERWMMKAA NGAAAFGE++K++     +A G   KK   E+   H SD+G 
Sbjct: 182  NRRKTADGYERWMMKAANNGAAAFGEVEKIDEKETAAAGGRGRKKSTGEEEEGHVSDRGE 241

Query: 1392 XXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVGND 1213
                   ARKNRLGLN                              +EIFTDDDEAVGND
Sbjct: 242  EDEEEEAARKNRLGLNKKSGDDDEEGPRGGDLDMDDDDI------EKEIFTDDDEAVGND 295

Query: 1212 PEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXXXXX 1033
            PEER DLAPE+PAPPEIK+D+++                         LN          
Sbjct: 296  PEER-DLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLGKASGLNDSDADEDDDD 354

Query: 1032 XXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTP----FXXXXXXXXXXXX 865
                 +   +P  APKQKD PK+EPADNSP+K AP+ SARGTP                 
Sbjct: 355  EDVDDDMNFNPTPAPKQKDAPKEEPADNSPMKPAPSASARGTPAASKSSKGKRKGDDTKA 414

Query: 864  XXXXXXXXXXXXKELKPSVKEE------------PXXXXXXXXXXXXXXXXXXXXXXXXX 721
                         E K SVKEE                                      
Sbjct: 415  SNGTPLKKVKSEPESKTSVKEENTSASKGSAPSKGTSSSAKAGSTSAASASSSKAGSAST 474

Query: 720  XGPVTEEEIRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNG-HNY 544
             GPVTEEEIR+VLL  APVTT DLVA FK R+KS EDKKAFADILRRISKIQKTNG +NY
Sbjct: 475  AGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKIQKTNGPNNY 534

Query: 543  VVLREK 526
            VVLREK
Sbjct: 535  VVLREK 540


>ref|XP_004983299.1| PREDICTED: transcription initiation factor IIF subunit alpha isoform
            X2 [Setaria italica]
          Length = 530

 Score =  538 bits (1387), Expect = e-150
 Identities = 292/532 (54%), Positives = 333/532 (62%), Gaps = 3/532 (0%)
 Frame = -3

Query: 2115 MSSFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREY 1936
            M S DL+LKPACEGCG+ SDLYG+ CKH TLC  CGK MA SRARC VC  P+T+LIREY
Sbjct: 1    MGSADLVLKPACEGCGNTSDLYGTGCKHTTLCSECGKSMARSRARCLVCSSPITRLIREY 60

Query: 1935 NVRASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWL 1756
            NVRA+A  DK+Y IGRFVTGLPPFSKKK AENKW+LHK+GLQGRQ+ + +REKY  KPW+
Sbjct: 61   NVRANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120

Query: 1755 LEDETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAE 1582
            LEDETGQ+QYQGQ+EG+QS  ATYYLL+  GKEF A PA SWYNF+K+AQYKQLTLEEAE
Sbjct: 121  LEDETGQYQYQGQMEGSQSATATYYLLMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAE 180

Query: 1581 EKMNKRKNNATGYERWMMKAATNGAAAFG-EMKKLEGMSNDSADGNRSKKMKSEDTGDHS 1405
            EKMNKRK +ATGYERWMMKAA NG AAFG ++KKLE  ++   +  R KK K+ + G++S
Sbjct: 181  EKMNKRKTSATGYERWMMKAAANGPAAFGSDIKKLEATNSGEKESGRPKKAKNNEEGNNS 240

Query: 1404 DKGXXXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEA 1225
            DKG        ARKNRLGL                           DWEHEE FTDDDEA
Sbjct: 241  DKGEEDEEEEAARKNRLGLTKKGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300

Query: 1224 VGNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXX 1045
            V  DPEER DLAPEIPAPPEIKQDDE+                          +      
Sbjct: 301  VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRAAGLNDS-----D 355

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPFXXXXXXXXXXXX 865
                     E   SPVLAPKQKD  KDEP DNSP K  P+G AR TP             
Sbjct: 356  ADEDEEEEDEDESSPVLAPKQKDQVKDEPVDNSPAKQTPSGHARSTPPASKFKQKRKSGA 415

Query: 864  XXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEEIRSV 685
                        K    S  +                             PVTE+EIRSV
Sbjct: 416  DDTKTSGGAASKKAKVESDTKASGIKEEAPASAKPTSKTSASSKSGTNVSPVTEDEIRSV 475

Query: 684  LLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLRE 529
            LLA APVTTQDLV+ FK R++  EDK AFA+IL++ISKIQKTNGHNYVVLR+
Sbjct: 476  LLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRD 527


>ref|XP_004983298.1| PREDICTED: transcription initiation factor IIF subunit alpha isoform
            X1 [Setaria italica]
          Length = 531

 Score =  538 bits (1387), Expect = e-150
 Identities = 292/532 (54%), Positives = 333/532 (62%), Gaps = 3/532 (0%)
 Frame = -3

Query: 2115 MSSFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREY 1936
            M S DL+LKPACEGCG+ SDLYG+ CKH TLC  CGK MA SRARC VC  P+T+LIREY
Sbjct: 1    MGSADLVLKPACEGCGNTSDLYGTGCKHTTLCSECGKSMARSRARCLVCSSPITRLIREY 60

Query: 1935 NVRASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWL 1756
            NVRA+A  DK+Y IGRFVTGLPPFSKKK AENKW+LHK+GLQGRQ+ + +REKY  KPW+
Sbjct: 61   NVRANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120

Query: 1755 LEDETGQHQYQGQLEGAQS--ATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAE 1582
            LEDETGQ+QYQGQ+EG+QS  ATYYLL+  GKEF A PA SWYNF+K+AQYKQLTLEEAE
Sbjct: 121  LEDETGQYQYQGQMEGSQSATATYYLLMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAE 180

Query: 1581 EKMNKRKNNATGYERWMMKAATNGAAAFG-EMKKLEGMSNDSADGNRSKKMKSEDTGDHS 1405
            EKMNKRK +ATGYERWMMKAA NG AAFG ++KKLE  ++   +  R KK K+ + G++S
Sbjct: 181  EKMNKRKTSATGYERWMMKAAANGPAAFGSDIKKLEATNSGEKESGRPKKAKNNEEGNNS 240

Query: 1404 DKGXXXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEA 1225
            DKG        ARKNRLGL                           DWEHEE FTDDDEA
Sbjct: 241  DKGEEDEEEEAARKNRLGLTKKGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300

Query: 1224 VGNDPEEREDLAPEIPAPPEIKQDDEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXX 1045
            V  DPEER DLAPEIPAPPEIKQDDE+                          +      
Sbjct: 301  VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRAAGLNDS----DA 356

Query: 1044 XXXXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPFXXXXXXXXXXXX 865
                     E   SPVLAPKQKD  KDEP DNSP K  P+G AR TP             
Sbjct: 357  DEDEEEEDQEDESSPVLAPKQKDQVKDEPVDNSPAKQTPSGHARSTPPASKFKQKRKSGA 416

Query: 864  XXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEEIRSV 685
                        K    S  +                             PVTE+EIRSV
Sbjct: 417  DDTKTSGGAASKKAKVESDTKASGIKEEAPASAKPTSKTSASSKSGTNVSPVTEDEIRSV 476

Query: 684  LLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLRE 529
            LLA APVTTQDLV+ FK R++  EDK AFA+IL++ISKIQKTNGHNYVVLR+
Sbjct: 477  LLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRD 528


>ref|XP_010252616.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Nelumbo nucifera] gi|719989360|ref|XP_010252617.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha-like [Nelumbo nucifera]
          Length = 533

 Score =  531 bits (1368), Expect = e-148
 Identities = 295/537 (54%), Positives = 339/537 (63%), Gaps = 9/537 (1%)
 Frame = -3

Query: 2109 SFDLILKPACEGCGSPSDLYGSNCKHKTLCPSCGKRMAESRARCNVCGVPVTKLIREYNV 1930
            S DL+LKP+C GCGS +DLYGSNCKH TLC SCGK MAE+  +C  CGV VT+LIREYNV
Sbjct: 2    SSDLLLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKAMAENHGKCYECGVIVTRLIREYNV 61

Query: 1929 RASASIDKSYFIGRFVTGLPPFSKKKHAENKWTLHKDGLQGRQLTDGLREKYRNKPWLLE 1750
            RAS++ DKSYFIGRFVTG+P FSKKK+A NKW+L K+GLQGRQ+TD LREKY+NKPWLLE
Sbjct: 62   RASSASDKSYFIGRFVTGVPNFSKKKNANNKWSLQKEGLQGRQVTDALREKYKNKPWLLE 121

Query: 1749 DETGQHQYQGQLEGAQSATYYLLVMQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMN 1570
            DETGQ QY GQ+EGAQS  YYLL+MQGKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM 
Sbjct: 122  DETGQ-QYHGQIEGAQSTAYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK 180

Query: 1569 KRKNNATGYERWMMKAATNGAAAFGEMKKLEGMSNDSADGN-RSKKMKSEDTGDHSDKGX 1393
             R+  A GYERWMMK A NG AAFGE++K +   +    G  R K    +D G  SDKG 
Sbjct: 181  NRRKTADGYERWMMKVANNGPAAFGEVEKFDDKESGGGGGRGRRKATGDDDEGKVSDKGE 240

Query: 1392 XXXXXXEARKNRLGLNXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVGND 1213
                  EARK RLGL                           DWEHEEIFTDDDEAVGND
Sbjct: 241  EDEEEEEARKTRLGLRKGGGDDDEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGND 300

Query: 1212 PEEREDLAPEIPAPPEIKQD--DEDXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXXX 1039
            PEEREDLAPE+PAPPEIKQD  DED                         LN        
Sbjct: 301  PEEREDLAPEVPAPPEIKQDEEDEDEANEEEGGLSKSGKELKKLLGRAGGLNDSDAEDDD 360

Query: 1038 XXXXXXXETAMSPVLAPKQKDGPKDEPADNSPLKTAPAGSARGTPF------XXXXXXXX 877
                   E  +SPVLAPK+KD PK+EPA+++P K   +G+ARGTP               
Sbjct: 361  DDEDVEDEFGLSPVLAPKKKDAPKEEPAESNPSKPLSSGTARGTPSTSKSAKAKRKSGGD 420

Query: 876  XXXXXXXXXXXXXXXXKELKPSVKEEPXXXXXXXXXXXXXXXXXXXXXXXXXXGPVTEEE 697
                             E K S+K+EP                          GPVTE+E
Sbjct: 421  DGKVANGAPSKKGKFENESKSSLKDEP----MSTSRCSAPQKALASSGSTAPTGPVTEDE 476

Query: 696  IRSVLLATAPVTTQDLVANFKGRIKSQEDKKAFADILRRISKIQKTNGHNYVVLREK 526
            IR+VLLAT+ +TTQDLVA FK R+K +EDK AFA I+RRISKIQK+NG N++VLR+K
Sbjct: 477  IRAVLLATSHLTTQDLVAKFKARLKLKEDKSAFAAIVRRISKIQKSNGSNWIVLRDK 533