BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00043968
         (340 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ABI34354.1 Retrotransposon gag protein [Solanum demissum]              56   7e-07
AAT38744.1 Putative gag-pol polyprotein, identical [Solanum demi...    53   9e-06
AAT38724.1 Putative retrotransposon protein, identical [Solanum ...    53   9e-06

>ABI34354.1 Retrotransposon gag protein [Solanum demissum]
          Length = 4543

 Score = 56.2 bits (134), Expect = 7e-07
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 48  RGENRFQKCRTCGRSHPGKCR-FEKVCYRCQQEGHFIANCPQ 170
           RG + F  C  CGR HPGKCR  +  C+RC QEGHF+  CP+
Sbjct: 272 RGGSSFPACAKCGRVHPGKCRQGQTCCFRCGQEGHFMKECPK 313



 Score = 56.2 bits (134), Expect = 7e-07
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 48   RGENRFQKCRTCGRSHPGKCR-FEKVCYRCQQEGHFIANCPQ 170
            RG + F  C  CGR HPGKCR  +  C+RC QEGHF+  CP+
Sbjct: 1782 RGGSSFPACAKCGRVHPGKCRQGQTCCFRCGQEGHFMKECPK 1823



 Score = 56.2 bits (134), Expect = 7e-07
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 48   RGENRFQKCRTCGRSHPGKCR-FEKVCYRCQQEGHFIANCPQ 170
            RG + F  C  CGR HPGKCR  +  C+RC QEGHF+  CP+
Sbjct: 3292 RGGSSFPACAKCGRVHPGKCRQGQTCCFRCGQEGHFMKECPK 3333


>AAT38744.1 Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query: 63  FQKCRTCGRSHPGKCRFEKV-CYRCQQEGHFIANCPQ 170
           F  C  CGR+HPGKCR  +  C++C QEGHF+  CP+
Sbjct: 373 FPACARCGRTHPGKCRDGQTGCFKCGQEGHFVKECPK 409


>AAT38724.1 Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query: 63  FQKCRTCGRSHPGKCRFEKV-CYRCQQEGHFIANCPQ 170
           F  C  CGR+HPGKCR  +  C++C QEGHF+  CP+
Sbjct: 379 FPACARCGRTHPGKCRDGQTGCFKCGQEGHFVKECPK 415