BLASTX nr result
ID: Alisma22_contig00043601
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Alisma22_contig00043601
(291 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABD93733.1 RNA polymerase beta chain, partial (chloroplast) [Ali... 195 2e-56
ABD93841.1 RNA polymerase beta chain, partial (chloroplast) [Hyd... 181 1e-51
YP_009241906.1 RNA polymerase beta' subunit (plastid) [Sagittari... 166 7e-46
ABD93730.1 RNA polymerase beta chain, partial (chloroplast) [But... 160 1e-43
ABD93769.1 RNA polymerase beta chain, partial (chloroplast) [Tri... 159 2e-43
ABD93732.1 RNA polymerase beta chain, partial (chloroplast) [Pot... 154 1e-41
YP_009241821.1 RNA polymerase beta' subunit (plastid) [Potamoget... 154 2e-41
AFJ73387.1 RNA polymerase beta subunit, partial (chloroplast) [C... 153 3e-41
AFJ80061.1 RNA polymerase beta subunit, partial (chloroplast) [C... 151 1e-40
AFJ80059.1 RNA polymerase beta subunit, partial (chloroplast) [C... 151 1e-40
AFJ73386.1 RNA polymerase beta subunit, partial (chloroplast) [C... 151 1e-40
ABD93829.1 RNA polymerase beta chain, partial (chloroplast) [Ple... 151 2e-40
AFJ73383.1 RNA polymerase beta subunit, partial (chloroplast) [S... 151 2e-40
YP_009269637.1 RNA polymerase beta' subunit (chloroplast) [Epipa... 151 2e-40
YP_006665770.1 RNA polymerase beta' subunit (chloroplast) [Elode... 151 2e-40
ABD93748.1 RNA polymerase beta chain, partial (chloroplast) [Mag... 150 2e-40
YP_009026871.1 RNA polymerase beta'' subunit (plastid) [Magnolia... 150 2e-40
YP_007474442.1 RNA polymerase beta subunit-2 (chloroplast) [Magn... 150 2e-40
YP_007474360.1 RNA polymerase beta subunit-2 (chloroplast) [Magn... 150 2e-40
AFJ80063.1 RNA polymerase beta subunit, partial (chloroplast) [C... 150 3e-40
>ABD93733.1 RNA polymerase beta chain, partial (chloroplast) [Alisma
plantago-aquatica]
Length = 792
Score = 195 bits (495), Expect = 2e-56
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE
Sbjct: 307 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 366
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK
Sbjct: 367 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 403
>ABD93841.1 RNA polymerase beta chain, partial (chloroplast) [Hydrocleys
nymphoides]
Length = 776
Score = 181 bits (460), Expect = 1e-51
Identities = 92/96 (95%), Positives = 92/96 (95%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LATFFPQDAL ERDNVQLKVVNYILY NGKPIRGIFHTSIQLVRTCLVLNWGQEK SSIE
Sbjct: 291 LATFFPQDALRERDNVQLKVVNYILYANGKPIRGIFHTSIQLVRTCLVLNWGQEKNSSIE 350
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIRTNDLIRDFIRIELVQSPISSYIVKR
Sbjct: 351 EEVHASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 386
>YP_009241906.1 RNA polymerase beta' subunit (plastid) [Sagittaria lichuanensis]
AMQ13480.1 RNA polymerase beta' subunit (plastid)
[Sagittaria lichuanensis]
Length = 1564
Score = 166 bits (421), Expect = 7e-46
Identities = 86/97 (88%), Positives = 88/97 (90%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LATFFPQDAL ERDNVQLKVVNYIL GN KPIR IFH +IQLVRTCLVLNWGQEK SS E
Sbjct: 971 LATFFPQDALRERDNVQLKVVNYILDGNDKPIRRIFHPNIQLVRTCLVLNWGQEKNSSRE 1030
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
EEV ASF+EI TNDLIRDFIRIELVQSPISSYIVKRK
Sbjct: 1031 EEVYASFIEISTNDLIRDFIRIELVQSPISSYIVKRK 1067
>ABD93730.1 RNA polymerase beta chain, partial (chloroplast) [Butomus
umbellatus]
Length = 824
Score = 160 bits (404), Expect = 1e-43
Identities = 85/96 (88%), Positives = 87/96 (90%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LATFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW QEK SI
Sbjct: 306 LATFFPQDPLRERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQEKNGSI- 364
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIRTN LIRDFIRIELVQSPI SYIVKR
Sbjct: 365 EEVHASFVEIRTNGLIRDFIRIELVQSPI-SYIVKR 399
>ABD93769.1 RNA polymerase beta chain, partial (chloroplast) [Triglochin
maritima]
Length = 822
Score = 159 bits (402), Expect = 2e-43
Identities = 83/97 (85%), Positives = 89/97 (91%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
L TFFP+D+L E+DNVQ +VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW QEKK SI
Sbjct: 304 LTTFFPRDSLPEKDNVQFRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQEKKGSI- 362
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
EEV ASFVEIRTN+LIRDFIRIELVQSPI SYIVKRK
Sbjct: 363 EEVHASFVEIRTNNLIRDFIRIELVQSPI-SYIVKRK 398
>ABD93732.1 RNA polymerase beta chain, partial (chloroplast) [Potamogeton
berchtoldii]
Length = 863
Score = 154 bits (389), Expect = 1e-41
Identities = 80/96 (83%), Positives = 87/96 (90%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L ERDN+QL+VVNYILYGNGKPIRGI+ TSIQLVRTCLV+NW QEK SI
Sbjct: 345 LATLFPQDPLLERDNIQLRVVNYILYGNGKPIRGIYQTSIQLVRTCLVVNWDQEKDGSI- 403
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEVRASFVEI+TN+LIRDFIRIELVQSPI SYI+KR
Sbjct: 404 EEVRASFVEIKTNNLIRDFIRIELVQSPI-SYIIKR 438
>YP_009241821.1 RNA polymerase beta' subunit (plastid) [Potamogeton perfoliatus]
AMQ13395.1 RNA polymerase beta' subunit (plastid)
[Potamogeton perfoliatus]
Length = 1377
Score = 154 bits (389), Expect = 2e-41
Identities = 80/96 (83%), Positives = 87/96 (90%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L ERDN+QL+VVNYILYGNGKPIRGI+ TSIQLVRTCLV+NW QEK SI
Sbjct: 789 LATLFPQDPLLERDNIQLRVVNYILYGNGKPIRGIYQTSIQLVRTCLVVNWDQEKDGSI- 847
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEVRASFVEI+TN+LIRDFIRIELVQSPI SYI+KR
Sbjct: 848 EEVRASFVEIKTNNLIRDFIRIELVQSPI-SYIIKR 882
>AFJ73387.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
fasciculatum]
Length = 882
Score = 153 bits (387), Expect = 3e-41
Identities = 78/96 (81%), Positives = 84/96 (87%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L E+DNVQL++VNYILYGNGK IRGI+HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGIYHTSIQLVRACLVLNWDQEKKGSIE 503
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538
>AFJ80061.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
subtropicum]
Length = 882
Score = 151 bits (382), Expect = 1e-40
Identities = 78/96 (81%), Positives = 83/96 (86%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538
>AFJ80059.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
acaule]
Length = 882
Score = 151 bits (382), Expect = 1e-40
Identities = 78/96 (81%), Positives = 83/96 (86%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538
>AFJ73386.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
bardolphianum]
Length = 882
Score = 151 bits (382), Expect = 1e-40
Identities = 78/96 (81%), Positives = 83/96 (86%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538
>ABD93829.1 RNA polymerase beta chain, partial (chloroplast) [Pleea tenuifolia]
Length = 821
Score = 151 bits (381), Expect = 2e-40
Identities = 80/96 (83%), Positives = 84/96 (87%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LATFFPQD L ERDNVQLKVVNYILYGNGKPIRGI HTSIQLVRTCLVLNW QE+ S+
Sbjct: 303 LATFFPQDLLQERDNVQLKVVNYILYGNGKPIRGISHTSIQLVRTCLVLNWDQEQNGSM- 361
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVE+R NDLIRDFIRIELV+SPI SY KR
Sbjct: 362 EEVHASFVEVRANDLIRDFIRIELVKSPI-SYTGKR 396
>AFJ73383.1 RNA polymerase beta subunit, partial (chloroplast) [Selenipedium
aequinoctiale]
Length = 880
Score = 151 bits (381), Expect = 2e-40
Identities = 78/96 (81%), Positives = 83/96 (86%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 442 LATLFPQDLLQEKDNVQLQIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 501
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 502 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 536
>YP_009269637.1 RNA polymerase beta' subunit (chloroplast) [Epipactis mairei]
ANT72548.1 RNA polymerase beta' subunit (chloroplast)
[Epipactis mairei]
Length = 1381
Score = 151 bits (381), Expect = 2e-40
Identities = 78/96 (81%), Positives = 84/96 (87%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT F QD L E+DNVQL++VNYILYGNGK IRGI HT+IQLVR CLVLNW QEKK SIE
Sbjct: 793 LATLFSQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTNIQLVRACLVLNWDQEKKGSIE 852
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVEIRTNDL+RDFIRIELV+S I SYIVKR
Sbjct: 853 EEVHASFVEIRTNDLLRDFIRIELVKSTI-SYIVKR 887
>YP_006665770.1 RNA polymerase beta' subunit (chloroplast) [Elodea canadensis]
AEY84642.1 RNA polymerase beta' subunit (chloroplast)
[Elodea canadensis]
Length = 1387
Score = 151 bits (381), Expect = 2e-40
Identities = 78/97 (80%), Positives = 86/97 (88%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
L TFFP+D L ER+NVQL+VVNYI YGNGKPIRGI+HTSIQLVRTCLVLNW QE+ SI
Sbjct: 790 LPTFFPRDPLRERENVQLRVVNYIPYGNGKPIRGIYHTSIQLVRTCLVLNWDQERNGSI- 848
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
EE+ ASFVEIRTNDLIRDFI++ELVQSPI SY VKRK
Sbjct: 849 EEIHASFVEIRTNDLIRDFIKMELVQSPI-SYTVKRK 884
>ABD93748.1 RNA polymerase beta chain, partial (chloroplast) [Magnolia
tripetala]
Length = 859
Score = 150 bits (380), Expect = 2e-40
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++ SI
Sbjct: 344 LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 402
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 403 EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 437
>YP_009026871.1 RNA polymerase beta'' subunit (plastid) [Magnolia tripetala]
AHW51948.1 RNA polymerase beta'' subunit (plastid)
[Magnolia tripetala]
Length = 1382
Score = 150 bits (380), Expect = 2e-40
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++ SI
Sbjct: 792 LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 850
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 851 EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 885
>YP_007474442.1 RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
subsp. biloba] AEX98574.1 RNA polymerase beta subunit-2
(chloroplast) [Magnolia officinalis subsp. biloba]
AEX98658.1 RNA polymerase beta subunit-2 (chloroplast)
[Magnolia officinalis subsp. biloba] AEX98742.1 RNA
polymerase beta subunit-2 (chloroplast) [Magnolia
officinalis subsp. biloba]
Length = 1382
Score = 150 bits (380), Expect = 2e-40
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++ SI
Sbjct: 792 LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 850
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 851 EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 885
>YP_007474360.1 RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis]
AEX98492.1 RNA polymerase beta subunit-2 (chloroplast)
[Magnolia officinalis]
Length = 1382
Score = 150 bits (380), Expect = 2e-40
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++ SI
Sbjct: 792 LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 850
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 851 EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 885
>AFJ80063.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
molle]
Length = 882
Score = 150 bits (379), Expect = 3e-40
Identities = 76/96 (79%), Positives = 83/96 (86%)
Frame = +1
Query: 1 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503
Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
EE+ ASFVEIR ND++RDFIRIELV+S I SY VKR
Sbjct: 504 EEIHASFVEIRANDMLRDFIRIELVKSTI-SYTVKR 538