BLASTX nr result

ID: Alisma22_contig00043601 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00043601
         (291 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ABD93733.1 RNA polymerase beta chain, partial (chloroplast) [Ali...   195   2e-56
ABD93841.1 RNA polymerase beta chain, partial (chloroplast) [Hyd...   181   1e-51
YP_009241906.1 RNA polymerase beta' subunit (plastid) [Sagittari...   166   7e-46
ABD93730.1 RNA polymerase beta chain, partial (chloroplast) [But...   160   1e-43
ABD93769.1 RNA polymerase beta chain, partial (chloroplast) [Tri...   159   2e-43
ABD93732.1 RNA polymerase beta chain, partial (chloroplast) [Pot...   154   1e-41
YP_009241821.1 RNA polymerase beta' subunit (plastid) [Potamoget...   154   2e-41
AFJ73387.1 RNA polymerase beta subunit, partial (chloroplast) [C...   153   3e-41
AFJ80061.1 RNA polymerase beta subunit, partial (chloroplast) [C...   151   1e-40
AFJ80059.1 RNA polymerase beta subunit, partial (chloroplast) [C...   151   1e-40
AFJ73386.1 RNA polymerase beta subunit, partial (chloroplast) [C...   151   1e-40
ABD93829.1 RNA polymerase beta chain, partial (chloroplast) [Ple...   151   2e-40
AFJ73383.1 RNA polymerase beta subunit, partial (chloroplast) [S...   151   2e-40
YP_009269637.1 RNA polymerase beta' subunit (chloroplast) [Epipa...   151   2e-40
YP_006665770.1 RNA polymerase beta' subunit (chloroplast) [Elode...   151   2e-40
ABD93748.1 RNA polymerase beta chain, partial (chloroplast) [Mag...   150   2e-40
YP_009026871.1 RNA polymerase beta'' subunit (plastid) [Magnolia...   150   2e-40
YP_007474442.1 RNA polymerase beta subunit-2 (chloroplast) [Magn...   150   2e-40
YP_007474360.1 RNA polymerase beta subunit-2 (chloroplast) [Magn...   150   2e-40
AFJ80063.1 RNA polymerase beta subunit, partial (chloroplast) [C...   150   3e-40

>ABD93733.1 RNA polymerase beta chain, partial (chloroplast) [Alisma
           plantago-aquatica]
          Length = 792

 Score =  195 bits (495), Expect = 2e-56
 Identities = 97/97 (100%), Positives = 97/97 (100%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE
Sbjct: 307 LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 366

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
           EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK
Sbjct: 367 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 403


>ABD93841.1 RNA polymerase beta chain, partial (chloroplast) [Hydrocleys
           nymphoides]
          Length = 776

 Score =  181 bits (460), Expect = 1e-51
 Identities = 92/96 (95%), Positives = 92/96 (95%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LATFFPQDAL ERDNVQLKVVNYILY NGKPIRGIFHTSIQLVRTCLVLNWGQEK SSIE
Sbjct: 291 LATFFPQDALRERDNVQLKVVNYILYANGKPIRGIFHTSIQLVRTCLVLNWGQEKNSSIE 350

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVEIRTNDLIRDFIRIELVQSPISSYIVKR
Sbjct: 351 EEVHASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 386


>YP_009241906.1 RNA polymerase beta' subunit (plastid) [Sagittaria lichuanensis]
            AMQ13480.1 RNA polymerase beta' subunit (plastid)
            [Sagittaria lichuanensis]
          Length = 1564

 Score =  166 bits (421), Expect = 7e-46
 Identities = 86/97 (88%), Positives = 88/97 (90%)
 Frame = +1

Query: 1    LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
            LATFFPQDAL ERDNVQLKVVNYIL GN KPIR IFH +IQLVRTCLVLNWGQEK SS E
Sbjct: 971  LATFFPQDALRERDNVQLKVVNYILDGNDKPIRRIFHPNIQLVRTCLVLNWGQEKNSSRE 1030

Query: 181  EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
            EEV ASF+EI TNDLIRDFIRIELVQSPISSYIVKRK
Sbjct: 1031 EEVYASFIEISTNDLIRDFIRIELVQSPISSYIVKRK 1067


>ABD93730.1 RNA polymerase beta chain, partial (chloroplast) [Butomus
           umbellatus]
          Length = 824

 Score =  160 bits (404), Expect = 1e-43
 Identities = 85/96 (88%), Positives = 87/96 (90%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LATFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW QEK  SI 
Sbjct: 306 LATFFPQDPLRERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQEKNGSI- 364

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVEIRTN LIRDFIRIELVQSPI SYIVKR
Sbjct: 365 EEVHASFVEIRTNGLIRDFIRIELVQSPI-SYIVKR 399


>ABD93769.1 RNA polymerase beta chain, partial (chloroplast) [Triglochin
           maritima]
          Length = 822

 Score =  159 bits (402), Expect = 2e-43
 Identities = 83/97 (85%), Positives = 89/97 (91%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           L TFFP+D+L E+DNVQ +VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW QEKK SI 
Sbjct: 304 LTTFFPRDSLPEKDNVQFRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQEKKGSI- 362

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
           EEV ASFVEIRTN+LIRDFIRIELVQSPI SYIVKRK
Sbjct: 363 EEVHASFVEIRTNNLIRDFIRIELVQSPI-SYIVKRK 398


>ABD93732.1 RNA polymerase beta chain, partial (chloroplast) [Potamogeton
           berchtoldii]
          Length = 863

 Score =  154 bits (389), Expect = 1e-41
 Identities = 80/96 (83%), Positives = 87/96 (90%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LAT FPQD L ERDN+QL+VVNYILYGNGKPIRGI+ TSIQLVRTCLV+NW QEK  SI 
Sbjct: 345 LATLFPQDPLLERDNIQLRVVNYILYGNGKPIRGIYQTSIQLVRTCLVVNWDQEKDGSI- 403

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEVRASFVEI+TN+LIRDFIRIELVQSPI SYI+KR
Sbjct: 404 EEVRASFVEIKTNNLIRDFIRIELVQSPI-SYIIKR 438


>YP_009241821.1 RNA polymerase beta' subunit (plastid) [Potamogeton perfoliatus]
            AMQ13395.1 RNA polymerase beta' subunit (plastid)
            [Potamogeton perfoliatus]
          Length = 1377

 Score =  154 bits (389), Expect = 2e-41
 Identities = 80/96 (83%), Positives = 87/96 (90%)
 Frame = +1

Query: 1    LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
            LAT FPQD L ERDN+QL+VVNYILYGNGKPIRGI+ TSIQLVRTCLV+NW QEK  SI 
Sbjct: 789  LATLFPQDPLLERDNIQLRVVNYILYGNGKPIRGIYQTSIQLVRTCLVVNWDQEKDGSI- 847

Query: 181  EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
            EEVRASFVEI+TN+LIRDFIRIELVQSPI SYI+KR
Sbjct: 848  EEVRASFVEIKTNNLIRDFIRIELVQSPI-SYIIKR 882


>AFJ73387.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
           fasciculatum]
          Length = 882

 Score =  153 bits (387), Expect = 3e-41
 Identities = 78/96 (81%), Positives = 84/96 (87%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LAT FPQD L E+DNVQL++VNYILYGNGK IRGI+HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGIYHTSIQLVRACLVLNWDQEKKGSIE 503

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538


>AFJ80061.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
           subtropicum]
          Length = 882

 Score =  151 bits (382), Expect = 1e-40
 Identities = 78/96 (81%), Positives = 83/96 (86%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538


>AFJ80059.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
           acaule]
          Length = 882

 Score =  151 bits (382), Expect = 1e-40
 Identities = 78/96 (81%), Positives = 83/96 (86%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538


>AFJ73386.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
           bardolphianum]
          Length = 882

 Score =  151 bits (382), Expect = 1e-40
 Identities = 78/96 (81%), Positives = 83/96 (86%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 504 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 538


>ABD93829.1 RNA polymerase beta chain, partial (chloroplast) [Pleea tenuifolia]
          Length = 821

 Score =  151 bits (381), Expect = 2e-40
 Identities = 80/96 (83%), Positives = 84/96 (87%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LATFFPQD L ERDNVQLKVVNYILYGNGKPIRGI HTSIQLVRTCLVLNW QE+  S+ 
Sbjct: 303 LATFFPQDLLQERDNVQLKVVNYILYGNGKPIRGISHTSIQLVRTCLVLNWDQEQNGSM- 361

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVE+R NDLIRDFIRIELV+SPI SY  KR
Sbjct: 362 EEVHASFVEVRANDLIRDFIRIELVKSPI-SYTGKR 396


>AFJ73383.1 RNA polymerase beta subunit, partial (chloroplast) [Selenipedium
           aequinoctiale]
          Length = 880

 Score =  151 bits (381), Expect = 2e-40
 Identities = 78/96 (81%), Positives = 83/96 (86%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 442 LATLFPQDLLQEKDNVQLQIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 501

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVEIR NDL+RDFIRIELV+S I SY VKR
Sbjct: 502 EEVHASFVEIRANDLLRDFIRIELVKSTI-SYTVKR 536


>YP_009269637.1 RNA polymerase beta' subunit (chloroplast) [Epipactis mairei]
            ANT72548.1 RNA polymerase beta' subunit (chloroplast)
            [Epipactis mairei]
          Length = 1381

 Score =  151 bits (381), Expect = 2e-40
 Identities = 78/96 (81%), Positives = 84/96 (87%)
 Frame = +1

Query: 1    LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
            LAT F QD L E+DNVQL++VNYILYGNGK IRGI HT+IQLVR CLVLNW QEKK SIE
Sbjct: 793  LATLFSQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTNIQLVRACLVLNWDQEKKGSIE 852

Query: 181  EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
            EEV ASFVEIRTNDL+RDFIRIELV+S I SYIVKR
Sbjct: 853  EEVHASFVEIRTNDLLRDFIRIELVKSTI-SYIVKR 887


>YP_006665770.1 RNA polymerase beta' subunit (chloroplast) [Elodea canadensis]
            AEY84642.1 RNA polymerase beta' subunit (chloroplast)
            [Elodea canadensis]
          Length = 1387

 Score =  151 bits (381), Expect = 2e-40
 Identities = 78/97 (80%), Positives = 86/97 (88%)
 Frame = +1

Query: 1    LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
            L TFFP+D L ER+NVQL+VVNYI YGNGKPIRGI+HTSIQLVRTCLVLNW QE+  SI 
Sbjct: 790  LPTFFPRDPLRERENVQLRVVNYIPYGNGKPIRGIYHTSIQLVRTCLVLNWDQERNGSI- 848

Query: 181  EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKRK 291
            EE+ ASFVEIRTNDLIRDFI++ELVQSPI SY VKRK
Sbjct: 849  EEIHASFVEIRTNDLIRDFIKMELVQSPI-SYTVKRK 884


>ABD93748.1 RNA polymerase beta chain, partial (chloroplast) [Magnolia
           tripetala]
          Length = 859

 Score =  150 bits (380), Expect = 2e-40
 Identities = 78/96 (81%), Positives = 85/96 (88%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++  SI 
Sbjct: 344 LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 402

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 403 EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 437


>YP_009026871.1 RNA polymerase beta'' subunit (plastid) [Magnolia tripetala]
            AHW51948.1 RNA polymerase beta'' subunit (plastid)
            [Magnolia tripetala]
          Length = 1382

 Score =  150 bits (380), Expect = 2e-40
 Identities = 78/96 (81%), Positives = 85/96 (88%)
 Frame = +1

Query: 1    LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
            L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++  SI 
Sbjct: 792  LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 850

Query: 181  EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
            EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 851  EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 885


>YP_007474442.1 RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
            subsp. biloba] AEX98574.1 RNA polymerase beta subunit-2
            (chloroplast) [Magnolia officinalis subsp. biloba]
            AEX98658.1 RNA polymerase beta subunit-2 (chloroplast)
            [Magnolia officinalis subsp. biloba] AEX98742.1 RNA
            polymerase beta subunit-2 (chloroplast) [Magnolia
            officinalis subsp. biloba]
          Length = 1382

 Score =  150 bits (380), Expect = 2e-40
 Identities = 78/96 (81%), Positives = 85/96 (88%)
 Frame = +1

Query: 1    LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
            L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++  SI 
Sbjct: 792  LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 850

Query: 181  EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
            EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 851  EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 885


>YP_007474360.1 RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis]
            AEX98492.1 RNA polymerase beta subunit-2 (chloroplast)
            [Magnolia officinalis]
          Length = 1382

 Score =  150 bits (380), Expect = 2e-40
 Identities = 78/96 (81%), Positives = 85/96 (88%)
 Frame = +1

Query: 1    LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
            L TFFPQD L ERDNVQL+VVNYILYGNGKPIRGI+HTSIQLVRTCLVLNW Q++  SI 
Sbjct: 792  LGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLNWDQDRNGSI- 850

Query: 181  EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
            EEV ASFVE+ TNDLIRDFIRI+LV+SPI SYI KR
Sbjct: 851  EEVHASFVEVGTNDLIRDFIRIDLVKSPI-SYIGKR 885


>AFJ80063.1 RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
           molle]
          Length = 882

 Score =  150 bits (379), Expect = 3e-40
 Identities = 76/96 (79%), Positives = 83/96 (86%)
 Frame = +1

Query: 1   LATFFPQDALWERDNVQLKVVNYILYGNGKPIRGIFHTSIQLVRTCLVLNWGQEKKSSIE 180
           LAT FPQD L E+DNVQL++VNYILYGNGK IRGI HTSIQLVR CLVLNW QEKK SIE
Sbjct: 444 LATLFPQDLLQEKDNVQLRIVNYILYGNGKSIRGISHTSIQLVRACLVLNWDQEKKGSIE 503

Query: 181 EEVRASFVEIRTNDLIRDFIRIELVQSPISSYIVKR 288
           EE+ ASFVEIR ND++RDFIRIELV+S I SY VKR
Sbjct: 504 EEIHASFVEIRANDMLRDFIRIELVKSTI-SYTVKR 538


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