BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00042792
         (245 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t...    77   1e-14
AAK29467.1 polyprotein-like [Solanum chilense]                         71   1e-12
KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN...    67   4e-11
OMO99089.1 Integrase, catalytic core [Corchorus capsularis]            64   3e-10
KYP66838.1 Retrovirus-related Pol polyprotein from transposon TN...    63   8e-10
KYP63038.1 Retrovirus-related Pol polyprotein from transposon TN...    62   2e-09
KYP61818.1 Retrovirus-related Pol polyprotein from transposon TN...    62   2e-09
KYP68287.1 Retrovirus-related Pol polyprotein from transposon TN...    62   2e-09
KYP31826.1 Retrovirus-related Pol polyprotein from transposon TN...    62   2e-09
KYP40194.1 Retrovirus-related Pol polyprotein from transposon TN...    61   5e-09
KYP40164.1 Retrovirus-related Pol polyprotein from transposon TN...    60   7e-09
KYP66912.1 Retrovirus-related Pol polyprotein from transposon TN...    60   1e-08
KYP46743.1 Retrovirus-related Pol polyprotein from transposon TN...    60   1e-08
CAN77602.1 hypothetical protein VITISV_024474 [Vitis vinifera]         60   1e-08
JAU16310.1 Retrovirus-related Pol polyprotein from transposon TN...    60   1e-08
GAU32405.1 hypothetical protein TSUD_220940 [Trifolium subterran...    60   1e-08
KYP43166.1 Retrovirus-related Pol polyprotein from transposon TN...    59   2e-08
GAU29060.1 hypothetical protein TSUD_278170 [Trifolium subterran...    59   2e-08
KYP41863.1 Retrovirus-related Pol polyprotein from transposon TN...    59   3e-08
GAU40007.1 hypothetical protein TSUD_257990 [Trifolium subterran...    59   3e-08

>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease CAA32025.1 unnamed protein product
           [Nicotiana tabacum]
          Length = 1328

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 35/61 (57%), Positives = 43/61 (70%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRTQC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVWV 185
           C+ CL  KQ R+ F+T    K NILD + SDVCG ME  S+GGN++ V FI DASRK+WV
Sbjct: 457 CDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWV 516

Query: 186 Y 188
           Y
Sbjct: 517 Y 517


>AAK29467.1 polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 34/61 (55%), Positives = 41/61 (67%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRTQC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVWV 185
           C   L  KQ R+ F+T    K NILD + SDVCG ME  S+GGN++ V FI DASRK+WV
Sbjct: 458 CNYWLFGKQHRVSFQTSSERKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWV 517

Query: 186 Y 188
           Y
Sbjct: 518 Y 518


>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1321

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 31/61 (50%), Positives = 39/61 (63%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRTQC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVWV 185
           C+ C+  K  R+ F+     K N L+ + SDVCG ME  SLGGN++ V FI DASRK WV
Sbjct: 450 CDYCVFGKHHRVSFKKSSNRKKNKLELVHSDVCGPMEVESLGGNKYFVTFIDDASRKTWV 509

Query: 186 Y 188
           Y
Sbjct: 510 Y 510


>OMO99089.1 Integrase, catalytic core [Corchorus capsularis]
          Length = 572

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 31/61 (50%), Positives = 38/61 (62%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRTQC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVWV 185
           C+ CL  K +R+ FR     K N L+ I SDVCG ME  SLGGNR+ + FI DAS K W 
Sbjct: 232 CDHCLFGKYRRVSFRIPATRKENRLELIHSDVCGPMEVESLGGNRYFLTFIDDASLKTWA 291

Query: 186 Y 188
           +
Sbjct: 292 F 292


>KYP66838.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1317

 Score = 63.2 bits (152), Expect = 8e-10
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKYN-ILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +C+SCL+ KQ R  F      K + IL  + SDVCG ++  SLGGNR+ V+F+ D SRKV
Sbjct: 471 VCDSCLISKQPRKSFSNFTTSKASKILHVVYSDVCGPIDTPSLGGNRYFVSFVDDLSRKV 530

Query: 180 WVY 188
           W+Y
Sbjct: 531 WLY 533


>KYP63038.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 467

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKYN-ILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +C++CL+ KQ R  F      K N +L  + SDVCG ++  SLGGNR+ V+F+ D SRK 
Sbjct: 371 ICDNCLISKQPRNSFSNFTASKANEVLHVVYSDVCGPIDTPSLGGNRYFVSFVDDLSRKA 430

Query: 180 WVY 188
           W+Y
Sbjct: 431 WLY 433


>KYP61818.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan] KYP63036.1 Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Cajanus cajan]
          Length = 1314

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKYN-ILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +C++CL+ KQ R  F      K N +L  + SDVCG ++  SLGGNR+ V+F+ D SRK 
Sbjct: 468 ICDNCLISKQPRNSFSNFTASKANEVLHVVYSDVCGPIDTPSLGGNRYFVSFVDDLSRKA 527

Query: 180 WVY 188
           W+Y
Sbjct: 528 WLY 530


>KYP68287.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1340

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKYN-ILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +C++CL+ KQ R  F      K N +L  + SDVCG ++  SLGGNR+ V+F+ D SRK 
Sbjct: 494 ICDNCLISKQPRNSFSNFTASKANEVLHVVYSDVCGPIDTPSLGGNRYFVSFVDDLSRKA 553

Query: 180 WVY 188
           W+Y
Sbjct: 554 WLY 556


>KYP31826.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1340

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKYN-ILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +C++CL+ KQ R  F      K N +L  + SDVCG ++  SLGGNR+ V+F+ D SRK 
Sbjct: 494 ICDNCLISKQPRNSFSNFTASKANEVLHVVYSDVCGPIDTPSLGGNRYFVSFVDDLSRKA 553

Query: 180 WVY 188
           W+Y
Sbjct: 554 WLY 556


>KYP40194.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 420

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKYN-ILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +C++CL+ KQ R  F      K + IL    SDVCG ++  SLGGNR+ V+F+ D SRKV
Sbjct: 179 ICDNCLINKQPRNSFSNFTASKASEILHVFYSDVCGPIDTPSLGGNRYFVSFVDDLSRKV 238

Query: 180 WVY 188
           W+Y
Sbjct: 239 WLY 241


>KYP40164.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1289

 Score = 60.5 bits (145), Expect = 7e-09
 Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRTQC*EKY-NILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVW 182
           CESC+L KQ R  F+     +  ++L+ I +DVCG  E +SLGGN++ ++FI D S+K+W
Sbjct: 474 CESCMLGKQARNPFKAHLRTRSKDVLEVIYTDVCGPFEVSSLGGNKYFISFIDDFSKKMW 533

Query: 183 VY 188
           +Y
Sbjct: 534 LY 535


>KYP66912.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 861

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EK-YNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           LC  CL  KQ R  F      K    L+ + SDVCG  E NSLGGNR+ V FI D +RK 
Sbjct: 20  LCSECLTSKQTRNSFVAHVPTKSVKALEIVYSDVCGPFEVNSLGGNRYFVTFIDDFTRKT 79

Query: 180 WVY 188
           W+Y
Sbjct: 80  WIY 82


>KYP46743.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 892

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRTQC*EKY-NILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVW 182
           CESC+L KQ R  F+     +  ++L+ I +DVCG  E +SLGGN++ + FI D S+K+W
Sbjct: 483 CESCMLGKQARNPFKAHLKTRSKDVLEVIYTDVCGPFEVSSLGGNKYFITFIDDFSKKMW 542

Query: 183 VY 188
           +Y
Sbjct: 543 LY 544


>CAN77602.1 hypothetical protein VITISV_024474 [Vitis vinifera]
          Length = 1207

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRT-QC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVW 182
           C  CL  KQ R+ F+T +   K  +LD + SDVCG M+  +LGG+ + V FI D SRK+W
Sbjct: 337 CAHCLAGKQTRVAFKTLRYTRKPGMLDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIW 396

Query: 183 VY 188
           VY
Sbjct: 397 VY 398


>JAU16310.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Noccaea caerulescens]
          Length = 825

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 28/61 (45%), Positives = 39/61 (63%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRTQC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVWV 185
           C+ C++ KQ R+ F+T       +LD + SDV G   + SLGG+R+ V FI D S+KVWV
Sbjct: 471 CKFCVMGKQSRVSFKTGLHTTKGLLDYVHSDVWGPTREQSLGGSRYFVIFIDDFSKKVWV 530

Query: 186 Y 188
           Y
Sbjct: 531 Y 531


>GAU32405.1 hypothetical protein TSUD_220940 [Trifolium subterraneum]
          Length = 1151

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKYN-ILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +CE C+  KQ R  F      + N +L+ I SDVCG M+ +S GGN++ V+F+ D SRK+
Sbjct: 478 VCEDCVQSKQHRDNFNKDVKSRTNNVLEVIYSDVCGPMQVDSTGGNKYFVSFVDDHSRKL 537

Query: 180 WVY 188
           W Y
Sbjct: 538 WTY 540


>KYP43166.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 412

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRT-QC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVW 182
           CE CLL KQ RLQF T +     ++L+ I +D+CG M  +SL  N++ + FI D SR  W
Sbjct: 345 CEGCLLGKQHRLQFSTSKARRAKDLLEMIHTDICGPMRTSSLHNNKYFILFIDDFSRMTW 404

Query: 183 VY 188
           VY
Sbjct: 405 VY 406


>GAU29060.1 hypothetical protein TSUD_278170 [Trifolium subterraneum]
          Length = 602

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKY-NILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +CE C+  KQ R  F      K  + L+ + SDVCG M+ +S+GGN++ V+F+ D SRK+
Sbjct: 444 ICEECVHSKQPRGSFNKYAMSKTKSTLEIVYSDVCGPMQVDSIGGNKYFVSFVADFSRKI 503

Query: 180 WVY 188
           W Y
Sbjct: 504 WTY 506


>KYP41863.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan] KYP41870.1 Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Cajanus cajan]
          Length = 617

 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   CESCLLEKQQRLQFRT-QC*EKYNILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKVW 182
           CE CLL KQ RL F T +     ++L+ I +D+CG M+ +SL  NR+ + FI D SR +W
Sbjct: 436 CEGCLLGKQHRLPFSTGKAWRAKDLLELIHTDICGPMQMSSLHNNRYFILFIDDFSRMIW 495

Query: 183 VY 188
           VY
Sbjct: 496 VY 497


>GAU40007.1 hypothetical protein TSUD_257990 [Trifolium subterraneum]
          Length = 1286

 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   LCESCLLEKQQRLQFRTQC*EKY-NILDKICSDVCGHMEDNSLGGNRFLVAFIVDASRKV 179
           +CE C+  K+ R  F       Y ++L+ I SDVCG M+ +S GGNR+ V F+ D SRK+
Sbjct: 521 VCEDCVQSKKHRDSFNKDVKSSYKSVLEVIYSDVCGPMQVDSNGGNRYFVTFVDDHSRKL 580

Query: 180 WVY 188
           W Y
Sbjct: 581 WTY 583