BLASTX nr result
ID: Alisma22_contig00039636
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Alisma22_contig00039636
(264 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t... 82 2e-16
AAK29467.1 polyprotein-like [Solanum chilense] 80 1e-15
OMO94644.1 Integrase, catalytic core [Corchorus capsularis] 79 2e-15
OMO99089.1 Integrase, catalytic core [Corchorus capsularis] 79 4e-15
KYP40203.1 Retrovirus-related Pol polyprotein from transposon TN... 72 7e-15
KYP53808.1 Retrovirus-related Pol polyprotein from transposon TN... 75 5e-14
KYP40209.1 Retrovirus-related Pol polyprotein from transposon TN... 72 5e-14
KMT10093.1 hypothetical protein BVRB_5g118560 [Beta vulgaris sub... 75 7e-14
XP_012089941.1 PREDICTED: uncharacterized protein LOC105648231 [... 75 8e-14
KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN... 75 9e-14
OMO51796.1 Reverse transcriptase, RNA-dependent DNA polymerase [... 75 9e-14
KYP32688.1 Retrovirus-related Pol polyprotein from transposon TN... 72 9e-14
KYP64759.1 Retrovirus-related Pol polyprotein from transposon TN... 74 1e-13
KYP76811.1 Retrovirus-related Pol polyprotein from transposon TN... 74 2e-13
KYP76810.1 Retrovirus-related Pol polyprotein from transposon TN... 74 2e-13
GAU39612.1 hypothetical protein TSUD_276520 [Trifolium subterran... 74 2e-13
KYP55807.1 Retrovirus-related Pol polyprotein from transposon TN... 73 3e-13
KYP47811.1 Retrovirus-related Pol polyprotein from transposon TN... 69 3e-13
KYP49408.1 Retrovirus-related Pol polyprotein from transposon TN... 73 4e-13
KYP31853.1 Retrovirus-related Pol polyprotein from transposon TN... 73 4e-13
>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease CAA32025.1 unnamed protein product
[Nicotiana tabacum]
Length = 1328
Score = 82.4 bits (202), Expect = 2e-16
Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = -2
Query: 218 CLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETE 42
C+H+S +EWV+DT AS+H T R FC Y +G+F KM SY+KI IG++CI+T
Sbjct: 284 CMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTN 343
Query: 41 LGYTILLKNVRHI 3
+G T++LK+VRH+
Sbjct: 344 VGCTLVLKDVRHV 356
>AAK29467.1 polyprotein-like [Solanum chilense]
Length = 1328
Score = 80.1 bits (196), Expect = 1e-15
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = -2
Query: 218 CLHISDN-TEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETE 42
C+H++ +EWV+DT ASYH T R FC Y +G++ KM SY+KI IG++C +T
Sbjct: 285 CMHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTN 344
Query: 41 LGYTILLKNVRHI 3
+G T++LK+VRH+
Sbjct: 345 VGCTLVLKDVRHV 357
>OMO94644.1 Integrase, catalytic core [Corchorus capsularis]
Length = 1393
Score = 79.3 bits (194), Expect = 2e-15
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = -2
Query: 263 TDAEDV-LTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATK 90
+D E V L CG G C H+ D + EW++DTGA+YH R F +YK G+F T+M K
Sbjct: 929 SDEETVSLICG--HGDCNHVVDPSIEWIVDTGATYHSVPKRELFTTYKVGDFGETRMGNK 986
Query: 89 SYAKICEIGEVCIETELGYTILLKNVRHI 3
S ++I IG++ ++T G T+ LKNVRHI
Sbjct: 987 SVSQIVGIGDIVVQTSTGCTLTLKNVRHI 1015
>OMO99089.1 Integrase, catalytic core [Corchorus capsularis]
Length = 572
Score = 78.6 bits (192), Expect = 4e-15
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Frame = -2
Query: 263 TDAEDV-LTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATK 90
+D E V L CG G C H++D + EW++DTGA+YH R +YK+G+F T+M K
Sbjct: 41 SDEEAVSLICG--HGDCNHVADPSIEWIVDTGATYHCVPKRELSTTYKAGDFGETRMGNK 98
Query: 89 SYAKICEIGEVCIETELGYTILLKNVRHI 3
S ++I IG++ ++T G T+ LKNVRHI
Sbjct: 99 SVSQIVGIGDIVVQTSTGCTLTLKNVRHI 127
>KYP40203.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 90
Score = 72.4 bits (176), Expect = 7e-15
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -2
Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
+SD + W++D+GA+ H+T + FF SY SG+F + KM +K+ +G+VC++T +G
Sbjct: 12 VSDESMWIVDSGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 71
Query: 29 ILLKNVRH 6
+LL+ V+H
Sbjct: 72 LLLRGVKH 79
>KYP53808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 464
Score = 75.5 bits (184), Expect = 5e-14
Identities = 28/69 (40%), Positives = 49/69 (71%)
Frame = -2
Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
+SD + W++D+GA+ H+T+ + FF SY SG+F + KM +K+ +G+VC++T +G
Sbjct: 189 VSDESMWIVDSGATLHVTSRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 248
Query: 29 ILLKNVRHI 3
+LLK V+H+
Sbjct: 249 LLLKGVKHV 257
>KYP40209.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 169
Score = 72.4 bits (176), Expect = 5e-14
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -2
Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
+SD + W++D+GA+ H+T + FF SY SG+F + KM +K+ +G+VC++T +G
Sbjct: 91 VSDESMWIVDSGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 150
Query: 29 ILLKNVRH 6
+LL+ V+H
Sbjct: 151 LLLRGVKH 158
>KMT10093.1 hypothetical protein BVRB_5g118560 [Beta vulgaris subsp. vulgaris]
Length = 993
Score = 75.1 bits (183), Expect = 7e-14
Identities = 29/65 (44%), Positives = 47/65 (72%)
Frame = -2
Query: 197 TEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYTILLK 18
T WV+D+GAS H+T+ + FF SY G++E+ KM A++ +G+VC+ T++G ++LK
Sbjct: 772 TSWVIDSGASLHVTSRKEFFTSYTPGDYEVLKMGNDGLAQVVGVGDVCLVTDIGAKLVLK 831
Query: 17 NVRHI 3
NVRH+
Sbjct: 832 NVRHV 836
>XP_012089941.1 PREDICTED: uncharacterized protein LOC105648231 [Jatropha curcas]
Length = 405
Score = 74.7 bits (182), Expect = 8e-14
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -2
Query: 218 CLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETE 42
C H+ D +TEW++D+GAS H R +F +YK G+F +M S ++ IG++CI+T
Sbjct: 191 CCHVGDADTEWIVDSGASDHCVPKREYFSTYKIGDFGTIRMGNNSVSQEVGIGDICIKTS 250
Query: 41 LGYTILLKNVRHI 3
+G T+ LKNVRHI
Sbjct: 251 VGSTLTLKNVRHI 263
>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1321
Score = 74.7 bits (182), Expect = 9e-14
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = -2
Query: 257 AEDVLTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
++D +T G C HI++ + EW++D+ ASYH R +F +Y+ G+F M KS +
Sbjct: 264 SDDEITLLCNQGECCHIAEPDEEWIIDSAASYHCVPKREYFTTYRKGDFGHVNMGNKSTS 323
Query: 80 KICEIGEVCIETELGYTILLKNVRHI 3
+I IG++ ++T +G T++LK+VRHI
Sbjct: 324 QIVGIGDIHLQTGVGCTLILKDVRHI 349
>OMO51796.1 Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
capsularis]
Length = 1500
Score = 74.7 bits (182), Expect = 9e-14
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = -2
Query: 248 VLTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKIC 72
V+ CG G C H++D + EW++D A+YH R F +YK+G+F T+M KS ++I
Sbjct: 517 VIVCG--HGDCNHVADPSIEWIVDISAAYHCVPKRELFTTYKAGDFGETRMGNKSVSQIL 574
Query: 71 EIGEVCIETELGYTILLKNVRHI 3
IG++ ++T G T+ LKNVR I
Sbjct: 575 GIGDIVVQTSTGCTLTLKNVRQI 597
>KYP32688.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 205
Score = 72.4 bits (176), Expect = 9e-14
Identities = 28/69 (40%), Positives = 45/69 (65%)
Frame = -2
Query: 212 HISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGY 33
H+SD + W++D+GA H+T + FF SY SG+F M KM K+ + +VC++T +G
Sbjct: 80 HVSDESMWIIDSGAMLHVTLRKEFFTSYTSGDFGMLKMGNDVVFKVIGVSDVCLQTNMGM 139
Query: 32 TILLKNVRH 6
+LL+ V+H
Sbjct: 140 QLLLRGVKH 148
>KYP64759.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 369
Score = 73.9 bits (180), Expect = 1e-13
Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = -2
Query: 257 AEDVLTCGVAMGHCLHIS-DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
AED+L + G+ L+I+ D++ W++D+GAS+H+T H FF SY+SG+F +M + +
Sbjct: 247 AEDMLYI-IREGNILNIAYDDSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRS 305
Query: 80 KICEIGEVCIETELGYTILLKNVRHI 3
KI IG++ + T G ++LK+VRH+
Sbjct: 306 KIVGIGDIILTTSTGCRLVLKDVRHV 331
>KYP76811.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1305
Score = 73.9 bits (180), Expect = 2e-13
Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = -2
Query: 257 AEDVLTCGVAMGHCLHIS-DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
AED+L + G+ L+I+ D++ W++D+GAS+H+T H FF SY+SG+F +M + +
Sbjct: 257 AEDMLYI-IREGNILNIAYDDSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRS 315
Query: 80 KICEIGEVCIETELGYTILLKNVRHI 3
KI IG++ + T G ++LK+VRH+
Sbjct: 316 KIVGIGDIILTTSTGCRLVLKDVRHV 341
>KYP76810.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1305
Score = 73.9 bits (180), Expect = 2e-13
Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = -2
Query: 257 AEDVLTCGVAMGHCLHIS-DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
AED+L + G+ L+I+ D++ W++D+GAS+H+T H FF SY+SG+F +M + +
Sbjct: 257 AEDMLYI-IREGNILNIAYDDSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRS 315
Query: 80 KICEIGEVCIETELGYTILLKNVRHI 3
KI IG++ + T G ++LK+VRH+
Sbjct: 316 KIVGIGDIILTTSTGCRLVLKDVRHV 341
>GAU39612.1 hypothetical protein TSUD_276520 [Trifolium subterraneum]
Length = 1403
Score = 73.6 bits (179), Expect = 2e-13
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -2
Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
+SD + W++D GA+ H+T + FF SY SG+F + KM AK+ +G++C++T +G
Sbjct: 133 VSDESVWIVDNGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVAKVTGVGDICVQTNMGMQ 192
Query: 29 ILLKNVRH 6
+LL++V+H
Sbjct: 193 LLLRDVKH 200
>KYP55807.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 476
Score = 73.2 bits (178), Expect = 3e-13
Identities = 28/68 (41%), Positives = 48/68 (70%)
Frame = -2
Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
+SD + W++D+GA+ H+T + FF SY SG+F + KM+ +K+ IG+VC++T +G
Sbjct: 4 VSDESMWIVDSGATLHVTPRKEFFTSYTSGDFGVLKMSNDGVSKVIGIGDVCLQTNMGMQ 63
Query: 29 ILLKNVRH 6
+LL+ V+H
Sbjct: 64 LLLRGVKH 71
>KYP47811.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 114
Score = 68.9 bits (167), Expect = 3e-13
Identities = 26/62 (41%), Positives = 42/62 (67%)
Frame = -2
Query: 191 WVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYTILLKNV 12
W++D+G + H+T + FF SY SGNF + KM +K+ +G+VC++T +G +LLK V
Sbjct: 2 WIVDSGTTLHVTPRKEFFTSYTSGNFGVLKMGNDGVSKVIGVGDVCLQTNMGTQLLLKGV 61
Query: 11 RH 6
+H
Sbjct: 62 KH 63
>KYP49408.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 414
Score = 72.8 bits (177), Expect = 4e-13
Identities = 26/69 (37%), Positives = 48/69 (69%)
Frame = -2
Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
+SD + W++D+GA+ H+T+ + FF SY G+F + KM +K+ +G+VC++T +G
Sbjct: 189 VSDESMWIIDSGATLHVTSRKEFFTSYTPGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 248
Query: 29 ILLKNVRHI 3
+LL+ V+H+
Sbjct: 249 LLLRGVKHV 257
>KYP31853.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1314
Score = 72.8 bits (177), Expect = 4e-13
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 203 DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYTIL 24
D W++D+GAS+H+T H FF SY+ G+F M KM +KI IGE+ + TE G ++
Sbjct: 285 DECIWIIDSGASFHVTPHEEFFSSYQKGDFGMVKMGNHVTSKIVGIGEIALMTENGNKLM 344
Query: 23 LKNVRHI 3
LK VRH+
Sbjct: 345 LKEVRHV 351