BLASTX nr result

ID: Alisma22_contig00039636 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00039636
         (264 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t...    82   2e-16
AAK29467.1 polyprotein-like [Solanum chilense]                         80   1e-15
OMO94644.1 Integrase, catalytic core [Corchorus capsularis]            79   2e-15
OMO99089.1 Integrase, catalytic core [Corchorus capsularis]            79   4e-15
KYP40203.1 Retrovirus-related Pol polyprotein from transposon TN...    72   7e-15
KYP53808.1 Retrovirus-related Pol polyprotein from transposon TN...    75   5e-14
KYP40209.1 Retrovirus-related Pol polyprotein from transposon TN...    72   5e-14
KMT10093.1 hypothetical protein BVRB_5g118560 [Beta vulgaris sub...    75   7e-14
XP_012089941.1 PREDICTED: uncharacterized protein LOC105648231 [...    75   8e-14
KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN...    75   9e-14
OMO51796.1 Reverse transcriptase, RNA-dependent DNA polymerase [...    75   9e-14
KYP32688.1 Retrovirus-related Pol polyprotein from transposon TN...    72   9e-14
KYP64759.1 Retrovirus-related Pol polyprotein from transposon TN...    74   1e-13
KYP76811.1 Retrovirus-related Pol polyprotein from transposon TN...    74   2e-13
KYP76810.1 Retrovirus-related Pol polyprotein from transposon TN...    74   2e-13
GAU39612.1 hypothetical protein TSUD_276520 [Trifolium subterran...    74   2e-13
KYP55807.1 Retrovirus-related Pol polyprotein from transposon TN...    73   3e-13
KYP47811.1 Retrovirus-related Pol polyprotein from transposon TN...    69   3e-13
KYP49408.1 Retrovirus-related Pol polyprotein from transposon TN...    73   4e-13
KYP31853.1 Retrovirus-related Pol polyprotein from transposon TN...    73   4e-13

>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease CAA32025.1 unnamed protein product
           [Nicotiana tabacum]
          Length = 1328

 Score = 82.4 bits (202), Expect = 2e-16
 Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -2

Query: 218 CLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETE 42
           C+H+S   +EWV+DT AS+H T  R  FC Y +G+F   KM   SY+KI  IG++CI+T 
Sbjct: 284 CMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTN 343

Query: 41  LGYTILLKNVRHI 3
           +G T++LK+VRH+
Sbjct: 344 VGCTLVLKDVRHV 356


>AAK29467.1 polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
 Frame = -2

Query: 218 CLHISDN-TEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETE 42
           C+H++   +EWV+DT ASYH T  R  FC Y +G++   KM   SY+KI  IG++C +T 
Sbjct: 285 CMHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTN 344

Query: 41  LGYTILLKNVRHI 3
           +G T++LK+VRH+
Sbjct: 345 VGCTLVLKDVRHV 357


>OMO94644.1 Integrase, catalytic core [Corchorus capsularis]
          Length = 1393

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
 Frame = -2

Query: 263  TDAEDV-LTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATK 90
            +D E V L CG   G C H+ D + EW++DTGA+YH    R  F +YK G+F  T+M  K
Sbjct: 929  SDEETVSLICG--HGDCNHVVDPSIEWIVDTGATYHSVPKRELFTTYKVGDFGETRMGNK 986

Query: 89   SYAKICEIGEVCIETELGYTILLKNVRHI 3
            S ++I  IG++ ++T  G T+ LKNVRHI
Sbjct: 987  SVSQIVGIGDIVVQTSTGCTLTLKNVRHI 1015


>OMO99089.1 Integrase, catalytic core [Corchorus capsularis]
          Length = 572

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = -2

Query: 263 TDAEDV-LTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATK 90
           +D E V L CG   G C H++D + EW++DTGA+YH    R    +YK+G+F  T+M  K
Sbjct: 41  SDEEAVSLICG--HGDCNHVADPSIEWIVDTGATYHCVPKRELSTTYKAGDFGETRMGNK 98

Query: 89  SYAKICEIGEVCIETELGYTILLKNVRHI 3
           S ++I  IG++ ++T  G T+ LKNVRHI
Sbjct: 99  SVSQIVGIGDIVVQTSTGCTLTLKNVRHI 127


>KYP40203.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 90

 Score = 72.4 bits (176), Expect = 7e-15
 Identities = 27/68 (39%), Positives = 47/68 (69%)
 Frame = -2

Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
           +SD + W++D+GA+ H+T  + FF SY SG+F + KM     +K+  +G+VC++T +G  
Sbjct: 12  VSDESMWIVDSGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 71

Query: 29  ILLKNVRH 6
           +LL+ V+H
Sbjct: 72  LLLRGVKH 79


>KYP53808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 464

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 28/69 (40%), Positives = 49/69 (71%)
 Frame = -2

Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
           +SD + W++D+GA+ H+T+ + FF SY SG+F + KM     +K+  +G+VC++T +G  
Sbjct: 189 VSDESMWIVDSGATLHVTSRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 248

Query: 29  ILLKNVRHI 3
           +LLK V+H+
Sbjct: 249 LLLKGVKHV 257


>KYP40209.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 169

 Score = 72.4 bits (176), Expect = 5e-14
 Identities = 27/68 (39%), Positives = 47/68 (69%)
 Frame = -2

Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
           +SD + W++D+GA+ H+T  + FF SY SG+F + KM     +K+  +G+VC++T +G  
Sbjct: 91  VSDESMWIVDSGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 150

Query: 29  ILLKNVRH 6
           +LL+ V+H
Sbjct: 151 LLLRGVKH 158


>KMT10093.1 hypothetical protein BVRB_5g118560 [Beta vulgaris subsp. vulgaris]
          Length = 993

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 29/65 (44%), Positives = 47/65 (72%)
 Frame = -2

Query: 197 TEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYTILLK 18
           T WV+D+GAS H+T+ + FF SY  G++E+ KM     A++  +G+VC+ T++G  ++LK
Sbjct: 772 TSWVIDSGASLHVTSRKEFFTSYTPGDYEVLKMGNDGLAQVVGVGDVCLVTDIGAKLVLK 831

Query: 17  NVRHI 3
           NVRH+
Sbjct: 832 NVRHV 836


>XP_012089941.1 PREDICTED: uncharacterized protein LOC105648231 [Jatropha curcas]
          Length = 405

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -2

Query: 218 CLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETE 42
           C H+ D +TEW++D+GAS H    R +F +YK G+F   +M   S ++   IG++CI+T 
Sbjct: 191 CCHVGDADTEWIVDSGASDHCVPKREYFSTYKIGDFGTIRMGNNSVSQEVGIGDICIKTS 250

Query: 41  LGYTILLKNVRHI 3
           +G T+ LKNVRHI
Sbjct: 251 VGSTLTLKNVRHI 263


>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1321

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = -2

Query: 257 AEDVLTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
           ++D +T     G C HI++ + EW++D+ ASYH    R +F +Y+ G+F    M  KS +
Sbjct: 264 SDDEITLLCNQGECCHIAEPDEEWIIDSAASYHCVPKREYFTTYRKGDFGHVNMGNKSTS 323

Query: 80  KICEIGEVCIETELGYTILLKNVRHI 3
           +I  IG++ ++T +G T++LK+VRHI
Sbjct: 324 QIVGIGDIHLQTGVGCTLILKDVRHI 349


>OMO51796.1 Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
           capsularis]
          Length = 1500

 Score = 74.7 bits (182), Expect = 9e-14
 Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
 Frame = -2

Query: 248 VLTCGVAMGHCLHISD-NTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKIC 72
           V+ CG   G C H++D + EW++D  A+YH    R  F +YK+G+F  T+M  KS ++I 
Sbjct: 517 VIVCG--HGDCNHVADPSIEWIVDISAAYHCVPKRELFTTYKAGDFGETRMGNKSVSQIL 574

Query: 71  EIGEVCIETELGYTILLKNVRHI 3
            IG++ ++T  G T+ LKNVR I
Sbjct: 575 GIGDIVVQTSTGCTLTLKNVRQI 597


>KYP32688.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 205

 Score = 72.4 bits (176), Expect = 9e-14
 Identities = 28/69 (40%), Positives = 45/69 (65%)
 Frame = -2

Query: 212 HISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGY 33
           H+SD + W++D+GA  H+T  + FF SY SG+F M KM      K+  + +VC++T +G 
Sbjct: 80  HVSDESMWIIDSGAMLHVTLRKEFFTSYTSGDFGMLKMGNDVVFKVIGVSDVCLQTNMGM 139

Query: 32  TILLKNVRH 6
            +LL+ V+H
Sbjct: 140 QLLLRGVKH 148


>KYP64759.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 369

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = -2

Query: 257 AEDVLTCGVAMGHCLHIS-DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
           AED+L   +  G+ L+I+ D++ W++D+GAS+H+T H  FF SY+SG+F   +M  +  +
Sbjct: 247 AEDMLYI-IREGNILNIAYDDSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRS 305

Query: 80  KICEIGEVCIETELGYTILLKNVRHI 3
           KI  IG++ + T  G  ++LK+VRH+
Sbjct: 306 KIVGIGDIILTTSTGCRLVLKDVRHV 331


>KYP76811.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1305

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = -2

Query: 257 AEDVLTCGVAMGHCLHIS-DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
           AED+L   +  G+ L+I+ D++ W++D+GAS+H+T H  FF SY+SG+F   +M  +  +
Sbjct: 257 AEDMLYI-IREGNILNIAYDDSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRS 315

Query: 80  KICEIGEVCIETELGYTILLKNVRHI 3
           KI  IG++ + T  G  ++LK+VRH+
Sbjct: 316 KIVGIGDIILTTSTGCRLVLKDVRHV 341


>KYP76810.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1305

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = -2

Query: 257 AEDVLTCGVAMGHCLHIS-DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYA 81
           AED+L   +  G+ L+I+ D++ W++D+GAS+H+T H  FF SY+SG+F   +M  +  +
Sbjct: 257 AEDMLYI-IREGNILNIAYDDSSWIVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRS 315

Query: 80  KICEIGEVCIETELGYTILLKNVRHI 3
           KI  IG++ + T  G  ++LK+VRH+
Sbjct: 316 KIVGIGDIILTTSTGCRLVLKDVRHV 341


>GAU39612.1 hypothetical protein TSUD_276520 [Trifolium subterraneum]
          Length = 1403

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 27/68 (39%), Positives = 47/68 (69%)
 Frame = -2

Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
           +SD + W++D GA+ H+T  + FF SY SG+F + KM     AK+  +G++C++T +G  
Sbjct: 133 VSDESVWIVDNGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVAKVTGVGDICVQTNMGMQ 192

Query: 29  ILLKNVRH 6
           +LL++V+H
Sbjct: 193 LLLRDVKH 200


>KYP55807.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 476

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 28/68 (41%), Positives = 48/68 (70%)
 Frame = -2

Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
           +SD + W++D+GA+ H+T  + FF SY SG+F + KM+    +K+  IG+VC++T +G  
Sbjct: 4   VSDESMWIVDSGATLHVTPRKEFFTSYTSGDFGVLKMSNDGVSKVIGIGDVCLQTNMGMQ 63

Query: 29  ILLKNVRH 6
           +LL+ V+H
Sbjct: 64  LLLRGVKH 71


>KYP47811.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 114

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 26/62 (41%), Positives = 42/62 (67%)
 Frame = -2

Query: 191 WVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYTILLKNV 12
           W++D+G + H+T  + FF SY SGNF + KM     +K+  +G+VC++T +G  +LLK V
Sbjct: 2   WIVDSGTTLHVTPRKEFFTSYTSGNFGVLKMGNDGVSKVIGVGDVCLQTNMGTQLLLKGV 61

Query: 11  RH 6
           +H
Sbjct: 62  KH 63


>KYP49408.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 414

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 26/69 (37%), Positives = 48/69 (69%)
 Frame = -2

Query: 209 ISDNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYT 30
           +SD + W++D+GA+ H+T+ + FF SY  G+F + KM     +K+  +G+VC++T +G  
Sbjct: 189 VSDESMWIIDSGATLHVTSRKEFFTSYTPGDFGVLKMGNDGVSKVIGVGDVCLQTNMGMQ 248

Query: 29  ILLKNVRHI 3
           +LL+ V+H+
Sbjct: 249 LLLRGVKHV 257


>KYP31853.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1314

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = -2

Query: 203 DNTEWVLDTGASYHITTHRHFFCSYKSGNFEMTKMATKSYAKICEIGEVCIETELGYTIL 24
           D   W++D+GAS+H+T H  FF SY+ G+F M KM     +KI  IGE+ + TE G  ++
Sbjct: 285 DECIWIIDSGASFHVTPHEEFFSSYQKGDFGMVKMGNHVTSKIVGIGEIALMTENGNKLM 344

Query: 23  LKNVRHI 3
           LK VRH+
Sbjct: 345 LKEVRHV 351


Top