BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00033184
         (740 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AAM22635.1 Gag and Pol [Zea mays]                                      88   2e-29
ABF94929.1 retrotransposon protein, putative, Ty1-copia subclass...    87   8e-29
AAK73108.1 Fourf gag/pol protein [Zea mays] ACA21850.1 Fourf gag...    86   1e-28
AAL75486.1 putative Fourf gag/pol protein [Zea mays]                   86   1e-28
CAH65951.1 H0716A07.9 [Oryza sativa Indica Group]                      89   2e-28
ABA99134.1 retrotransposon protein, putative, Ty1-copia subclass...    84   2e-28
XP_002489303.1 hypothetical protein SORBIDRAFT_0010s005460 [Sorg...    89   3e-28
AAO60021.1 putative polyprotein [Oryza sativa Japonica Group] AB...    87   4e-28
JAT53147.1 Retrovirus-related Pol polyprotein from transposon TN...    85   4e-28
BAC65862.1 hypothetical polyprotein [Oryza sativa Japonica Group]      87   5e-28
ABA98225.1 retrotransposon protein, putative, Ty1-copia subclass...    85   7e-28
ABA96959.2 retrotransposon protein, putative, Ty1-copia subclass...    87   7e-28
ABF96953.1 retrotransposon protein, putative, Ty1-copia subclass...    87   9e-28
AAS01934.1 putative Integrase core domain containing protein [Or...    87   9e-28
CAE04807.2 OSJNBb0022P19.2 [Oryza sativa Japonica Group]               86   9e-28
ABG66192.1 retrotransposon protein, putative, Ty1-copia subclass...    87   1e-27
EEE67150.1 hypothetical protein OsJ_24213 [Oryza sativa Japonica...    87   1e-27
AAK39592.1 putative retrotransposon polyprotein [Oryza sativa Ja...    87   1e-27
ABA96779.1 retrotransposon protein, putative, Ty1-copia subclass...    87   2e-27
AAT69606.1 putative polyprotein [Oryza sativa Japonica Group] AA...    87   2e-27

>AAM22635.1 Gag and Pol [Zea mays]
          Length = 1264

 Score = 88.2 bits (217), Expect(2) = 2e-29
 Identities = 40/54 (74%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+RMTTIRV++
Sbjct: 797 VGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARMTTIRVLL 850



 Score = 69.7 bits (169), Expect(2) = 2e-29
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 1/185 (0%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G +AKV VP +K + LG   VD +FLGY     A+R              
Sbjct: 612  KPSLSYLRTWGCMAKVNVPINKKRKLGPRTVDCVFLGYASCSIAYRFLVVKSEVPDVYVD 671

Query: 184  XXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYNDS 363
               +   ATF   +F M     K++     +++  IP+H   + + E   E  I +  D 
Sbjct: 672  TIMESRDATFFEHIFPM-----KDIHSNSRYSSEIIPEHNTPIESFEQPHE--IVLEEDD 724

Query: 364  KEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILSN 540
             +    +++K+ R  K+ G +F+ Y ++D   +  +A  S +    KE V N+++SILSN
Sbjct: 725  ND--APKRSKRQRVEKSFGDDFIVYLVDDTPTTIAEAFASSDADDWKEAVHNEMDSILSN 782

Query: 541  GT*EL 555
            GT E+
Sbjct: 783  GTWEI 787


>ABF94929.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1284

 Score = 86.7 bits (213), Expect(2) = 8e-29
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 730 VGCKWVFKKKLGHDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 783



 Score = 68.9 bits (167), Expect(2) = 8e-29
 Identities = 61/190 (32%), Positives = 85/190 (44%), Gaps = 6/190 (3%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G LAKV VP  K + LG   VD +FLGY     A+R              
Sbjct: 545  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHYNIAYRILIVKSEVPDMHVG 604

Query: 184  XXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSI-----PKHTERMTT*EGDLEKAIF 348
               +   ATF    F MK      +SQ     T SI      +HT    T E D E    
Sbjct: 605  TIMESRDATFFESFFPMK-DTHSSLSQPSEIITSSITPPEQTEHTHEHVTEEDDSE---- 659

Query: 349  VYNDSKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVE 525
                       R++K+ RT K+ G +F  Y ++D   S  +A  S +  + KEVV ++++
Sbjct: 660  ---------APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEVVRSEMD 710

Query: 526  SILSNGT*EL 555
            SI++NGT E+
Sbjct: 711  SIIANGTLEV 720


>AAK73108.1 Fourf gag/pol protein [Zea mays] ACA21850.1 Fourf gag/pol protein
           [Zea mays]
          Length = 1279

 Score = 85.9 bits (211), Expect(2) = 1e-28
 Identities = 40/54 (74%), Positives = 46/54 (85%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           IG KWIFKKKL  D  I +YKARLVAKGYTQ+EG D+FDTYSPV+R+TTIR +I
Sbjct: 811 IGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRTLI 864



 Score = 69.3 bits (168), Expect(2) = 1e-28
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 1/186 (0%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K+++ YL   G LAKV VP +K + LG   VD IFLGY      +R              
Sbjct: 624  KLNLSYLRTWGCLAKVNVPINKKRKLGPKTVDCIFLGYSFHSTGYRFLIIKSDVPDMYVD 683

Query: 184  XXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYNDS 363
               +   ATF  + F MK   P + S E      +I  H   ++      E +     + 
Sbjct: 684  TIMESRDATFFENEFPMK-NTPSDTSHE------TIISHEHELSIPIDHAEDSHVHIPEE 736

Query: 364  KEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILSN 540
             + +  RK+K+ R  K+ G++F+ Y +ED   +  +A  S +    KE V +++ESI+SN
Sbjct: 737  DDTIVTRKSKRQRVAKSFGNDFIVYLVEDTPTTISEAYSSPDADLWKEAVRSEMESIMSN 796

Query: 541  GT*ELV 558
            GT E+V
Sbjct: 797  GTWEVV 802


>AAL75486.1 putative Fourf gag/pol protein [Zea mays]
          Length = 1292

 Score = 85.9 bits (211), Expect(2) = 1e-28
 Identities = 40/54 (74%), Positives = 46/54 (85%)
 Frame = +3

Query: 576  IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
            IG KWIFKKKL  D  I +YKARLVAKGYTQ+EG D+FDTYSPV+R+TTIR +I
Sbjct: 851  IGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRTLI 904



 Score = 68.9 bits (167), Expect(2) = 1e-28
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            ++++ YL   G LAKV VP +K + LG   VD +FLGY      +R              
Sbjct: 664  RLNLSYLRTWGCLAKVNVPINKKRKLGPKTVDCVFLGYSFHSTGYRFLIIKSDVPDMYVD 723

Query: 184  XXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYNDS 363
               +   ATF  + F MK   P ++S E      +I  H   ++      E +     + 
Sbjct: 724  TIMESRDATFFENEFPMK-NTPSDISHE------TIIPHEHELSIPIDHAEDSHVHIPEE 776

Query: 364  KEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILSN 540
             + +  RK+K+ R  K+ G++F+ Y +ED   +  +A  S +    KE V +++ESI+SN
Sbjct: 777  DDTIVTRKSKRQRVAKSFGNDFIVYLVEDTPTTISEAYFSPDADLWKEAVRSEMESIMSN 836

Query: 541  GT*ELV 558
            GT E+V
Sbjct: 837  GTWEVV 842


>CAH65951.1 H0716A07.9 [Oryza sativa Indica Group]
          Length = 1216

 Score = 89.4 bits (220), Expect(2) = 2e-28
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +3

Query: 540 WDLRISDSRSDYIGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMT 719
           W++     R   +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+T
Sbjct: 719 WEVTERPYRCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLT 778

Query: 720 TIRVII 737
           TIRV++
Sbjct: 779 TIRVLL 784



 Score = 65.1 bits (157), Expect(2) = 2e-28
 Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 6/190 (3%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G LAKV VP  K + LG   VD +FLGY     A+R              
Sbjct: 546  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVG 605

Query: 184  XXRDYVIATFI*DVFSMK-----FGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIF 348
               +   ATF    F MK        P E+    S T     +HT  + + E D+ +A  
Sbjct: 606  TIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHEVVS-EEDVSEA-- 661

Query: 349  VYNDSKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVE 525
                       R++K+ RT K+ G +F  Y ++D   S  +A  S +  + KEVV ++++
Sbjct: 662  ----------PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEVVHSEMD 711

Query: 526  SILSNGT*EL 555
            SI++NGT E+
Sbjct: 712  SIIANGTWEV 721


>ABA99134.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1083

 Score = 84.3 bits (207), Expect(2) = 2e-28
 Identities = 38/54 (70%), Positives = 46/54 (85%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAK YTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 615 VGCKWVFKKKLRPDGTIEKYKARLVAKDYTQKEGDDFFDTYSPVARLTTIRVLL 668



 Score = 69.7 bits (169), Expect(2) = 2e-28
 Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 1   EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
           +K+++ YL   G LAKV VP  K + LG   VD +FLGY      +RS            
Sbjct: 429 KKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRSLIVNSGVPDMRV 488

Query: 181 XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
               +Y  ATF  + F MK   P   SQE                T E + E+       
Sbjct: 489 GTITEYRDATFFENEFPMK-NTPSTSSQEPVLPHEHFAPIKHNDQTPEENPEE------- 540

Query: 361 SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
              +V  RK+K+ RT K+ G +++ Y ++D   + ++A  S +  + KE V ++++SI+S
Sbjct: 541 -DNIVATRKSKRQRTAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMS 599

Query: 538 NGT*ELV 558
           NGT E+V
Sbjct: 600 NGTWEVV 606


>XP_002489303.1 hypothetical protein SORBIDRAFT_0010s005460 [Sorghum bicolor]
          Length = 699

 Score = 88.6 bits (218), Expect(2) = 3e-28
 Identities = 40/54 (74%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG DYFDTYSPV+R+TTIRV++
Sbjct: 230 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLL 283



 Score = 65.1 bits (157), Expect(2) = 3e-28
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 1   EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
           +++++ YL V G LAKV VP +K + +G   VD +FL Y      +R             
Sbjct: 42  KRLNISYLHVWGCLAKVNVPINKKRKIGPKTVDCVFLDYAIHSVGYRFLIINSNAPDMAV 101

Query: 181 XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
               +   ATF  + F MK G P   S +    +     H +  T    +LE+     ++
Sbjct: 102 GTVMESRDATFFENEFPMKIGAPSVSSHDSVPESHDSNIHADDNT---HELEQ----NSE 154

Query: 361 SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
             +    R++K+ R  K+ G +F+ Y ++D   +  +A  S +    KE V ++++SI+S
Sbjct: 155 EADNTVTRRSKRQRVAKSFGEDFIIYLVDDTPTTISEAYSSSDSDMWKEAVQSEMDSIMS 214

Query: 538 NGT*ELV 558
           NGT E+V
Sbjct: 215 NGTWEVV 221


>AAO60021.1 putative polyprotein [Oryza sativa Japonica Group] ABF99553.1
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1224

 Score = 87.0 bits (214), Expect(2) = 4e-28
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 757 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 810



 Score = 66.2 bits (160), Expect(2) = 4e-28
 Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 6/190 (3%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G LAKV VP  K + LG   VD +FLGY   I A+R              
Sbjct: 572  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHIIAYRFLIVKSEVPDMHVG 631

Query: 184  XXRDYVIATFI*DVFSMK-----FGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIF 348
               +   ATF    F MK        P E+    S T     +HT  + + E D+ +A  
Sbjct: 632  TIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELVS-EEDVSEA-- 687

Query: 349  VYNDSKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVE 525
                       R++K+ RT K+ G +F  Y ++D   S  +A  S +  + KE V ++++
Sbjct: 688  ----------PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 737

Query: 526  SILSNGT*EL 555
            SI++NGT E+
Sbjct: 738  SIIANGTWEV 747


>JAT53147.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Anthurium amnicola]
          Length = 524

 Score = 85.1 bits (209), Expect(2) = 4e-28
 Identities = 38/54 (70%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           IG KWIF+KKL  D  I+KYK ++VAKG+ Q+EGIDYFDTYSPV+RMTTIRV++
Sbjct: 334 IGCKWIFRKKLRPDGSIDKYKVKIVAKGFKQKEGIDYFDTYSPVARMTTIRVLV 387



 Score = 68.2 bits (165), Expect(2) = 4e-28
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 2/182 (1%)
 Frame = +1

Query: 19  YL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXXXXRDY 198
           +L V G LAK+ +PE K + +G   VD +FLGY E   A+R                 ++
Sbjct: 163 HLRVWGCLAKIKIPEIKKRKIGPKTVDGVFLGYAENSIAYRFLIIKSDINGISENTIVEF 222

Query: 199 VIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYNDSKEM-V 375
             A F  D+F MK  +  E+   D      +P  T R               NDS  + +
Sbjct: 223 GDAVFFEDIFPMKSKINVEIEASD------LPS-TSRTNE------------NDSPSLNL 263

Query: 376 EQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVVN-DVESILSNGT*E 552
           E R++K+ R  K+ G ++    +EDD  ++ +A+ S E  F KE V  +++SI+ NGT  
Sbjct: 264 EPRRSKRARLEKSFGEDYFTNLVEDDPNTYGEAISSPESAFWKEAVKCEMDSIMVNGTWV 323

Query: 553 LV 558
           LV
Sbjct: 324 LV 325


>BAC65862.1 hypothetical polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score = 87.0 bits (214), Expect(2) = 5e-28
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 800 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 853



 Score = 65.9 bits (159), Expect(2) = 5e-28
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 1/187 (0%)
 Frame = +1

Query: 1    EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
            +K+++ +L   G LAKV VP  K + LG   VD +FLGY      +R             
Sbjct: 614  KKLNLSHLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMRV 673

Query: 181  XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
                +   ATF  + F MK   P   SQE   +    P+H   +   +  LE+      +
Sbjct: 674  GTITESRDATFFENEFPMK-NAPSTSSQEPILS----PEHFVPIEHIDQTLEE----NPE 724

Query: 361  SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
               +V  RK+K+ RT K+ G +++ Y ++D   + ++A  S +  + KE V ++++SI+S
Sbjct: 725  EDNIVATRKSKRQRTAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMS 784

Query: 538  NGT*ELV 558
            NGT E+V
Sbjct: 785  NGTWEVV 791


>ABA98225.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1199

 Score = 84.7 bits (208), Expect(2) = 7e-28
 Identities = 38/54 (70%), Positives = 46/54 (85%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+T IRV++
Sbjct: 731 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTMIRVLL 784



 Score = 67.8 bits (164), Expect(2) = 7e-28
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 1    EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
            +K+++ YL   G LAKV VP  K + LG N VD +FLGY      +R             
Sbjct: 545  KKLNLSYLRTWGCLAKVNVPIAKKRKLGPNTVDCVFLGYAIHSVGYRFLIVNSGVPDMHV 604

Query: 181  XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
                +   ATF  + F MK   P   SQE                T EG+ E+       
Sbjct: 605  GTIFESRDATFFENEFPMKH-TPSTSSQETVMPHEHFVPIEHNDQTPEGNPEE------- 656

Query: 361  SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
               +V+ RK+K+ R  K+ G +++ Y ++D   + ++A  S +  + KE V ++++SI+S
Sbjct: 657  -DNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSEIDSIMS 715

Query: 538  NGT*ELV 558
            NGT E+V
Sbjct: 716  NGTWEVV 722


>ABA96959.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 920

 Score = 87.0 bits (214), Expect(2) = 7e-28
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 430 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 483



 Score = 65.5 bits (158), Expect(2) = 7e-28
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 1/189 (0%)
 Frame = +1

Query: 1   EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
           +K++++YL   G LAKV VP  K + LG N VD +FLGY      +R             
Sbjct: 244 KKLNLLYLRTWGCLAKVNVPIAKKRKLGPNTVDCVFLGYAIHSVGYRFLIVNSGVPDMYV 303

Query: 181 XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
                   ATF  + F MK   P   S+E                T E + E+       
Sbjct: 304 GTILKSRDATFFENEFPMKH-TPSTSSKETVMPHEHFAPIEHNDQTPEENPEE------- 355

Query: 361 SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
              +V+ RK+K+ R  K+ G +++ Y ++D   + ++A  S +  + KE V ++++SI+S
Sbjct: 356 -DNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMS 414

Query: 538 NGT*ELVIH 564
           NGT E+V H
Sbjct: 415 NGTWEVVEH 423


>ABF96953.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1197

 Score = 87.0 bits (214), Expect(2) = 9e-28
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 730 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 783



 Score = 65.1 bits (157), Expect(2) = 9e-28
 Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 6/190 (3%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G LAKV VP  K + LG   VD +FLGY     A+R              
Sbjct: 545  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 604

Query: 184  XXRDYVIATFI*DVFSMK-----FGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIF 348
               +   ATF    F MK        P E+    S T     +HT  + + E D+ +A  
Sbjct: 605  TIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELVS-EEDVSEA-- 660

Query: 349  VYNDSKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVE 525
                       RK+K+ RT K+ G +F  Y ++D   S  +A  S +  + KE V ++++
Sbjct: 661  ----------PRKSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 710

Query: 526  SILSNGT*EL 555
            SI++NGT E+
Sbjct: 711  SIIANGTWEV 720


>AAS01934.1 putative Integrase core domain containing protein [Oryza sativa
           Japonica Group]
          Length = 1180

 Score = 87.0 bits (214), Expect(2) = 9e-28
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 713 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 766



 Score = 65.1 bits (157), Expect(2) = 9e-28
 Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 6/190 (3%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G LAKV VP  K + LG   VD +FLGY     A+R              
Sbjct: 528  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 587

Query: 184  XXRDYVIATFI*DVFSMK-----FGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIF 348
               +   ATF    F MK        P E+    S T     +HT  + + E D+ +A  
Sbjct: 588  TIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELVS-EEDVSEA-- 643

Query: 349  VYNDSKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVE 525
                       RK+K+ RT K+ G +F  Y ++D   S  +A  S +  + KE V ++++
Sbjct: 644  ----------PRKSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 693

Query: 526  SILSNGT*EL 555
            SI++NGT E+
Sbjct: 694  SIIANGTWEV 703


>CAE04807.2 OSJNBb0022P19.2 [Oryza sativa Japonica Group]
          Length = 1099

 Score = 85.5 bits (210), Expect(2) = 9e-28
 Identities = 38/54 (70%), Positives = 46/54 (85%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLV KGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 757 VGCKWVFKKKLRPDGTIEKYKARLVTKGYTQKEGEDFFDTYSPVARLTTIRVLL 810



 Score = 66.6 bits (161), Expect(2) = 9e-28
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 1/187 (0%)
 Frame = +1

Query: 1    EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
            +K+++ YL   G LAKV +P  K + LG N VD +F+GY      +R             
Sbjct: 571  KKLNLSYLRTWGCLAKVNIPIAKKRKLGPNTVDCVFIGYAIHSVGYRFLIVNSRVLDMHV 630

Query: 181  XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
                +   ATF  + F MK   P   SQE      +         T E + E+       
Sbjct: 631  GTILESRDATFFENEFPMKH-TPSTSSQETVMPHENFAPIEHNDQTSEKNPEE------- 682

Query: 361  SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
               +V+ RK+K+ R  K+ G +++ Y ++D   + ++A  SL+  + KE V ++++SI+S
Sbjct: 683  -DNIVDTRKSKRQRVAKSFGDDYIVYLMDDTPRTIEEAYSSLDANYWKEAVRSEMDSIIS 741

Query: 538  NGT*ELV 558
            NGT E+V
Sbjct: 742  NGTWEVV 748


>ABG66192.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1457

 Score = 87.0 bits (214), Expect(2) = 1e-27
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576  IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
            +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 989  VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 1042



 Score = 64.7 bits (156), Expect(2) = 1e-27
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 1/189 (0%)
 Frame = +1

Query: 1    EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
            +K+++ YL   G LAKV VP  K + LG   VD +FLGY      +R             
Sbjct: 803  KKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHA 862

Query: 181  XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
                +   ATF  + F MK+  P   S+E      ++  H E     E D ++      +
Sbjct: 863  GTILESRDATFFENEFPMKY-TPSTSSKE------TVMPH-EHFAPIEHD-DQTPEENPE 913

Query: 361  SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
               +V+ RK+K+ R  K+ G +++ Y ++D   + ++A  S +  + KE V ++++SI+S
Sbjct: 914  EDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMS 973

Query: 538  NGT*ELVIH 564
            NGT E+V H
Sbjct: 974  NGTWEVVEH 982


>EEE67150.1 hypothetical protein OsJ_24213 [Oryza sativa Japonica Group]
          Length = 1028

 Score = 87.0 bits (214), Expect(2) = 1e-27
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 560 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 613



 Score = 64.7 bits (156), Expect(2) = 1e-27
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 1   EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
           +K+++ YL   G LAKV VP  K + LG   VD +FLGY      +R             
Sbjct: 377 KKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSDMHAGTI 436

Query: 181 XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
              RD   ATF  + FSMK+  P   S+E                T E + E+       
Sbjct: 437 LETRD---ATFFENEFSMKY-TPSTSSKETVMPHEHFAPIEHNDQTPEENPEE------- 485

Query: 361 SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
              +V+ R++K+ R  K+ G +++ Y ++D   + ++A  S +  + KE V ++++SI+S
Sbjct: 486 -DNIVDTRRSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMS 544

Query: 538 NGT*ELV 558
           NGT E V
Sbjct: 545 NGTWEFV 551


>AAK39592.1 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
          Length = 804

 Score = 87.0 bits (214), Expect(2) = 1e-27
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 336 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 389



 Score = 64.7 bits (156), Expect(2) = 1e-27
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 1/189 (0%)
 Frame = +1

Query: 1   EKVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXX 180
           +K+++ YL   G LAKV VP  K + LG   VD +FLGY      +R             
Sbjct: 150 KKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHA 209

Query: 181 XXXRDYVIATFI*DVFSMKFGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIFVYND 360
               +   ATF  + F MK+  P   S+E      ++  H E     E D ++      +
Sbjct: 210 GTILESRDATFFENEFPMKY-TPSTSSKE------TVMPH-EHFAPIEHD-DQTPEENPE 260

Query: 361 SKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVESILS 537
              +V+ RK+K+ R  K+ G +++ Y ++D   + ++A  S +  + KE V ++++SI+S
Sbjct: 261 EDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMS 320

Query: 538 NGT*ELVIH 564
           NGT E+V H
Sbjct: 321 NGTWEVVEH 329


>ABA96779.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1468

 Score = 87.0 bits (214), Expect(2) = 2e-27
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576  IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
            +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 922  VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 975



 Score = 64.3 bits (155), Expect(2) = 2e-27
 Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 6/190 (3%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G LAKV VP  K + LG   VD +FLGY     A+R              
Sbjct: 737  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 796

Query: 184  XXRDYVIATFI*DVFSMK-----FGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIF 348
               +   ATF    F MK        P E+   +S T     +HT  + + E D+ +A  
Sbjct: 797  TIMESRDATFFESFFPMKDTHSGSNQPSEII-PNSITPPEQTEHTHELVS-EEDVSEA-- 852

Query: 349  VYNDSKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVE 525
                       R++K+ RT K+ G +F  Y ++D   S  +A  S +  + KE V ++++
Sbjct: 853  ----------PRRSKRQRTAKSFGGDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMD 902

Query: 526  SILSNGT*EL 555
            SI++NGT E+
Sbjct: 903  SIIANGTWEV 912


>AAT69606.1 putative polyprotein [Oryza sativa Japonica Group] AAU90098.1
           putative polyprotein [Oryza sativa Japonica Group]
          Length = 1320

 Score = 87.0 bits (214), Expect(2) = 2e-27
 Identities = 39/54 (72%), Positives = 47/54 (87%)
 Frame = +3

Query: 576 IGYKWIFKKKLNVDMLINKYKARLVAKGYTQREGIDYFDTYSPVSRMTTIRVII 737
           +G KW+FKKKL  D  I KYKARLVAKGYTQ+EG D+FDTYSPV+R+TTIRV++
Sbjct: 835 VGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLL 888



 Score = 64.3 bits (155), Expect(2) = 2e-27
 Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 6/190 (3%)
 Frame = +1

Query: 4    KVSVIYL*V*GWLAKVLVPEHKMKILGRNMVDAIFLGYVETIYAFRS*XXXXXXXXXXXX 183
            K S+ YL   G LAKV VP  K + LG   VD +FLGY     A+R              
Sbjct: 650  KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVG 709

Query: 184  XXRDYVIATFI*DVFSMK-----FGVPKEVSQEDSFTTWSIPKHTERMTT*EGDLEKAIF 348
               +   ATF    F MK        P E+    S T     +HT  + + E D+ +A  
Sbjct: 710  TIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELVS-EEDVSEA-- 765

Query: 349  VYNDSKEMVEQRKNKQTRTFKASGSEFLAYNIEDDRVSFKQAMVSLEFKF*KEVV-NDVE 525
                       R++K+ RT K+ G +F  Y ++D   S  +A  S +  + KE V ++++
Sbjct: 766  ----------PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDANYWKEAVRSEMD 815

Query: 526  SILSNGT*EL 555
            SI++NGT E+
Sbjct: 816  SIIANGTWEV 825